RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11208
(116 letters)
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 79.8 bits (196), Expect = 2e-20
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFT-IRSVISSFGLFSVCPAN 92
GVL GI RGLFIID KGVLRQITVN G+++ +++ + VCPA
Sbjct: 115 GVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAG 174
Query: 93 WKPDSPTIKPSPAESKEYFNKVN 115
WKP S TIKP+ +SKEYF+K N
Sbjct: 175 WKPGSDTIKPNVDDSKEYFSKHN 197
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 77.1 bits (189), Expect = 2e-19
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFS----VC 89
GVL E G+ RGLFIIDPK LRQITVN G ++ +F VC
Sbjct: 114 GVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVG---RDVDEALRLVKAFQFVEKHGEVC 170
Query: 90 PANWKPDSPTIKPSPAESKEYF 111
PANWKP T+KP P +SKEYF
Sbjct: 171 PANWKPGDKTMKPDPEKSKEYF 192
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 50.9 bits (121), Expect = 2e-09
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 41 GIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFS----VCPANWKPD 96
+ R LF I P+ ++ + TG I V+ S L P NW
Sbjct: 124 PLTCRCLFFISPEKKIKATVLYPATTG---RNAHEILRVLKSLQLTYTTPVATPVNWNEG 180
Query: 97 SPTIKP---SPAESKEYF-NKVNK 116
E ++F N++ K
Sbjct: 181 DKCCVIPTLQDDEISKHFKNEITK 204
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 49.4 bits (117), Expect = 4e-09
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFS-----V 88
+ E G+ R F++DP+G+++ I V G+ + I + + V
Sbjct: 108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRD---ASDLLRKIKAAQYVAAHPGEV 164
Query: 89 CPANWKPDSPTIKPSP 104
CPA WK T+ PS
Sbjct: 165 CPAKWKEGEATLAPSL 180
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 49.8 bits (118), Expect = 5e-09
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 42 IPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYF-TIRSVISSFGLFSVCPANWKPDSPTI 100
+ R +F+ P L+ + TG+ + S+ + P +WK +
Sbjct: 125 VTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVM 184
Query: 101 KP---SPAESKEYFNK 113
E+K+ F K
Sbjct: 185 VLPTIPEEEAKKLFPK 200
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 42.2 bits (98), Expect = 2e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTG 67
GVL E +G+ RG+FIIDP G LRQI +N G
Sbjct: 114 GVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIG 147
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 42.5 bits (99), Expect = 2e-06
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 34 GVLIEPAGI-PLRGLFIIDPKGVLRQITVNVPRTGKTLFGYF-TIRSVISSFGLFSVCPA 91
G+L + +RG+FI+D +GV+R + G+ + ++++ L PA
Sbjct: 109 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPA 168
Query: 92 NWKPDS----PTIKPSP---AESKEYFNK 113
+W + I P P +++
Sbjct: 169 DWPNNEIIGEGLIVPPPTTEDQARARMES 197
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 40.2 bits (93), Expect = 9e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 37 IEPAGIPLRGLFIIDPKGVLRQITVNVPRTG 67
+E G+ LRGLFIIDP GV++ ++VN G
Sbjct: 110 LEGPGLALRGLFIIDPNGVIKHLSVNDLPVG 140
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 39.9 bits (92), Expect = 1e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGK 68
VL E G+ RG FIIDP GV++ I +N G+
Sbjct: 109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGR 143
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 36.6 bits (83), Expect = 2e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 35 VLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGKT 69
V E AGI RG F++D G++R + P +
Sbjct: 106 VFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRD 140
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 34.5 bits (78), Expect = 0.001
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 39 PAGIPLRGLFIIDPKGVLRQITVNVPRTGKTLFGYFTIRSVISSFGLFS----VCPANWK 94
+ LR +ID +GV++ + VN G++ I +I + VCPANW+
Sbjct: 112 NESVALRAFVLIDKQGVVQHLLVNNLALGRS---VDEILRLIDALQHHEKYGDVCPANWQ 168
Query: 95 P 95
Sbjct: 169 K 169
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 32.3 bits (72), Expect = 0.007
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 36 LIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGK 68
++ G+ R FI+DP ++ ++ G+
Sbjct: 123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGR 155
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 31.6 bits (70), Expect = 0.011
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 34 GVLIEPA----GIPLRGLFIIDPKGVLRQITVNVPRTGK 68
V E + R +FI+ P G + V +
Sbjct: 104 NVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNE 142
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 29.8 bits (66), Expect = 0.054
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 34 GVLIEPAGIPLRGLFIIDPKGVLRQITVNVPRTGK 68
VL E I LRG F+ID +R +N G+
Sbjct: 114 DVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGR 147
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 28.4 bits (62), Expect = 0.15
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 45 RGLFIIDPKGVLRQITVNVPRTGKT 69
+ ++ G+++ + V TG T
Sbjct: 126 KRFSMVVQDGIVKALNVEPDGTGLT 150
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 28.0 bits (61), Expect = 0.22
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 35 VLIEPAGIPLRGLFIIDPKGVLRQITV 61
+LI + R +F++D +R +
Sbjct: 117 LLINEWHLLARAVFVLDTDNTIRYVEY 143
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 190
Score = 25.9 bits (56), Expect = 1.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 98 PTIKPSPAESKEYFNKVNK 116
P P P E+++YF +
Sbjct: 13 PMADPLPDETQKYFEICQE 31
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 24.8 bits (53), Expect = 2.4
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 27 REKEDRIGVLIEPAGI---PLRGLFIIDPKGVLRQITV 61
E GV I + R + +ID + +
Sbjct: 111 AEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQL 148
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 24.8 bits (53), Expect = 2.9
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 34 GVLIEPAGIPL---RGLFIIDPKGVLR 57
GV I+ + R + ++D + +
Sbjct: 116 GVDIQTGPLAGLTSRAVIVLDEQNNVL 142
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 203
Score = 24.3 bits (53), Expect = 4.2
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 43 PLRGLFIIDPKGVLRQITVNVP 64
R + +P+ VL++ +++P
Sbjct: 128 AYRSRVVKEPRKVLQEFGLDLP 149
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 197
Score = 24.0 bits (52), Expect = 5.5
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 43 PLRGLFIIDPKGVLRQITVNVP 64
R + +P+ VL ++ +
Sbjct: 123 EYRARVVREPRKVLSEMGTEIA 144
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B
virus [TaxId: 10407]}
Length = 142
Score = 23.7 bits (51), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 70 LFGYFTIRSVISSFGLFSVCPANWKP-DSPTI 100
FG T+ + SFG++ P ++P ++P +
Sbjct: 109 TFGRETVLEYLVSFGVWIRTPPAYRPPNAPIL 140
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy
grass (Phleum pratense) [TaxId: 15957]}
Length = 95
Score = 22.8 bits (49), Expect = 9.9
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 65 RTGKTLFGYFTIRSVISSFG----LFSVCPANWKPDS 97
T L G FT+R + G V P WK D+
Sbjct: 56 DTPDKLTGPFTVR-YTTEGGTKTEAEDVIPEGWKADT 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.412
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,309
Number of extensions: 18884
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 28
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)