BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1121
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90805|CNG1_CHICK Cyclic nucleotide-gated channel cone photoreceptor subunit alpha
OS=Gallus gallus PE=2 SV=1
Length = 735
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 45/71 (63%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P SN+Y+ WL II V YN LI R F ELQ + K W F DY +D V D+
Sbjct: 202 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 261
Query: 98 VQFRTGYLEQG 108
V+FRTG+LEQG
Sbjct: 262 VRFRTGFLEQG 272
>sp|Q16281|CNGA3_HUMAN Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens
GN=CNGA3 PE=1 SV=2
Length = 694
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 44/73 (60%)
Query: 36 STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
+ VV+P SNLY+ WL I V YN + LI R F ELQ W DY+ D VLD
Sbjct: 158 AIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLD 217
Query: 96 ILVQFRTGYLEQG 108
+LV+ RTG+LEQG
Sbjct: 218 VLVRARTGFLEQG 230
>sp|Q9JJZ8|CNGA3_MOUSE Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus
GN=Cnga3 PE=1 SV=2
Length = 631
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 10 GDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQS 69
G+ PD G GR+ VV+P SN+Y+ WL I V YN L+ R
Sbjct: 84 GEQKPPDGGE---GRK--------EEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRAC 132
Query: 70 FPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
F ELQ W DY+ D VLD+LV+ RTG+LEQG
Sbjct: 133 FDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQG 171
>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha
OS=Gallus gallus PE=2 SV=1
Length = 645
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
+++P N+Y+ WL IT V+YN WT+I+ R F ELQ + WF DY +D + D+
Sbjct: 109 IIDPAGNMYYNWLFCITMPVMYN-WTMIIARACFDELQNDYLAVWFIVDYVSDVIYIADM 167
Query: 97 LVQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 168 FVRTRTGYLEQG 179
>sp|Q29441|CNGA3_BOVIN Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus
GN=CNGA3 PE=2 SV=1
Length = 706
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
S V++P SN+Y++WL +I V YN L+ R F ELQ W DY+ D +D
Sbjct: 177 SVVMDPSSNMYYHWLTVIAVPVFYNWCLLVCRACFDELQSEHLMLWLVLDYSADILYGMD 236
Query: 96 ILVQFRTGYLEQG 108
+LV+ RTG+LEQG
Sbjct: 237 MLVRARTGFLEQG 249
>sp|Q28279|CNGA1_CANFA cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2
SV=1
Length = 691
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P N+Y+ WL IT V+YN +I R F ELQ + ++W DY +D +LD+
Sbjct: 156 VIDPAGNMYYNWLFCITLPVMYNWTMVIARACFDELQSDYLEYWIIFDYLSDIVYLLDMF 215
Query: 98 VQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 216 VRTRTGYLEQG 226
>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1
PE=2 SV=1
Length = 683
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
V++P N+Y+ WL IT V+YN WT+I+ R F ELQ + ++W DY +D + D+
Sbjct: 148 VIDPSGNMYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADM 206
Query: 97 LVQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 207 FVRTRTGYLEQG 218
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1
SV=3
Length = 690
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
V++P N Y+ WL IT V+YN WT+++ R F ELQ + ++W DY +D ++D+
Sbjct: 157 VIDPSGNTYYNWLFCITLPVMYN-WTMVIARACFDELQSDYLEYWLILDYVSDIVYLIDM 215
Query: 97 LVQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 216 FVRTRTGYLEQG 227
>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1
Length = 690
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
V++P N Y+ WL IT V+YN WT+I+ R F ELQ + ++W DY +D +LD+
Sbjct: 155 VIDPSGNTYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWLAFDYLSDVVYLLDM 213
Query: 97 LVQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 214 FVRTRTGYLEQG 225
>sp|Q64359|CNGA4_RAT Cyclic nucleotide-gated cation channel alpha-4 OS=Rattus norvegicus
GN=Cnga4 PE=2 SV=1
Length = 575
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P + Y++WL + ++YNL ++ R FP+LQ + WF DYT+D +LDI
Sbjct: 26 VLDPSGDYYYWWLNTMVFPIMYNLIIVVCRACFPDLQHSYLVAWFVLDYTSDLLYLLDIG 85
Query: 98 VQFRTGYLEQG 108
V+F TG+LEQG
Sbjct: 86 VRFHTGFLEQG 96
>sp|Q3UW12|CNGA4_MOUSE Cyclic nucleotide-gated cation channel alpha-4 OS=Mus musculus
GN=Cnga4 PE=2 SV=1
Length = 575
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P + Y++WL + ++YNL ++ R FP+LQ + WF DYT+D +LDI
Sbjct: 26 VLDPSGDYYYWWLNTMVFPIMYNLIIVVCRACFPDLQHSYLVAWFVLDYTSDLLYLLDIG 85
Query: 98 VQFRTGYLEQG 108
V+F TG+LEQG
Sbjct: 86 VRFHTGFLEQG 96
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2
SV=2
Length = 684
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
V++P N Y+ WL IT V+YN WT+I+ R F ELQ + ++W DY +D + D+
Sbjct: 149 VIDPSGNTYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADM 207
Query: 97 LVQFRTGYLEQG 108
V+ RTGYLEQG
Sbjct: 208 FVRTRTGYLEQG 219
>sp|Q8IV77|CNGA4_HUMAN Cyclic nucleotide-gated cation channel alpha-4 OS=Homo sapiens
GN=CNGA4 PE=1 SV=3
Length = 575
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P + Y++WL + V+YNL L+ R FP+LQ W DYT+D +LD++
Sbjct: 26 VLDPSGDYYYWWLNTMVFPVMYNLIILVCRACFPDLQHGYLVAWLVLDYTSDLLYLLDMV 85
Query: 98 VQFRTGYLEQG 108
V+F TG+LEQG
Sbjct: 86 VRFHTGFLEQG 96
>sp|Q62398|CNGA2_MOUSE Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2
PE=2 SV=2
Length = 664
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 31 KKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90
KK V++P + Y+ WL +I VLYN L+ R F +LQ N W DY +DT
Sbjct: 127 KKKFELFVLDPAGDWYYRWLFVIAMPVLYNWCLLVARACFSDLQRNYFVVWLVLDYFSDT 186
Query: 91 FIVLDILVQFRTGYLEQG 108
+ D++++ RTG+LEQG
Sbjct: 187 VYIADLIIRLRTGFLEQG 204
>sp|Q00195|CNGA2_RAT Cyclic nucleotide-gated olfactory channel OS=Rattus norvegicus
GN=Cnga2 PE=2 SV=1
Length = 664
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P + Y+ WL +I VLYN L+ R F +LQ N W DY +DT + D++
Sbjct: 134 VLDPAGDWYYRWLFVIAMPVLYNWCLLVARACFSDLQRNYFVVWLVLDYFSDTVYIADLI 193
Query: 98 VQFRTGYLEQG 108
++ RTG+LEQG
Sbjct: 194 IRLRTGFLEQG 204
>sp|P55934|CNG_ICTPU Cyclic nucleotide-gated cation channel OS=Ictalurus punctatus PE=2
SV=1
Length = 682
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 16 DDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE 75
+D + P+ K+ VV+ ++Y+YWL I LYN L+ R F +LQ+
Sbjct: 108 NDQSAAPADAPKKTFKERWEGFVVSQSDDIYYYWLFFIALASLYNWIMLVARACFDQLQD 167
Query: 76 NGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
W DY D +LD ++ RTGYLEQG
Sbjct: 168 ENFFLWVGLDYLCDVIYILDTCIRLRTGYLEQG 200
>sp|Q03041|CNGA2_BOVIN Cyclic nucleotide-gated olfactory channel OS=Bos taurus GN=CNGA2
PE=1 SV=1
Length = 663
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 31 KKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90
KK V++P + Y+ WL +I VLYN L+ R F +LQ+ W DY +D
Sbjct: 125 KKKFELFVLDPAGDWYYRWLFLIALPVLYNWCLLVARACFSDLQKGYYIVWLVLDYVSDV 184
Query: 91 FIVLDILVQFRTGYLEQG 108
+ D+ ++ RTG+LEQG
Sbjct: 185 VYIADLFIRLRTGFLEQG 202
>sp|Q16280|CNGA2_HUMAN Cyclic nucleotide-gated olfactory channel OS=Homo sapiens GN=CNGA2
PE=2 SV=2
Length = 664
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 31 KKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90
KK V++P + Y+ WL +I VLYN L+ R F +LQ+ W DY +D
Sbjct: 125 KKKFELFVLDPAGDWYYCWLFVIAMPVLYNWCLLVARACFSDLQKGYYLVWLVLDYVSDV 184
Query: 91 FIVLDILVQFRTGYLEQG 108
+ D+ ++ RTG+LEQG
Sbjct: 185 VYIADLFIRLRTGFLEQG 202
>sp|Q28718|CNGA2_RABIT Cyclic nucleotide-gated olfactory channel OS=Oryctolagus cuniculus
GN=CNGA2 PE=2 SV=1
Length = 664
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
V++P + Y+ WL +I VLYN L+ R F +LQ W DY +D + D+
Sbjct: 132 VLDPAGDWYYRWLFVIAMPVLYNWCLLVARACFSDLQRGYFLVWLVLDYFSDVVYIADLF 191
Query: 98 VQFRTGYLEQG 108
++ RTG+LEQG
Sbjct: 192 IRLRTGFLEQG 202
>sp|Q24278|CNG_DROME Cyclic nucleotide-gated cation channel OS=Drosophila melanogaster
GN=Cng PE=2 SV=2
Length = 665
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 39 VNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILV 98
V+P ++ WL I++ VLYN+ ++ R F E+ ++ FW+ DY D +LD LV
Sbjct: 100 VDPTLQSHYRWLAIVSLAVLYNIIFVVGRAVFWEINKSAPAFWYTLDYLCDFIYLLDTLV 159
Query: 99 QFRTGYLEQG 108
G+L+QG
Sbjct: 160 HMHEGFLDQG 169
>sp|Q28181|CNGB1_BOVIN Cyclic nucleotide-gated cation channel beta-1 OS=Bos taurus
GN=CNGB1 PE=1 SV=1
Length = 1394
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 20 CHAGRRPRCRRKKVHHSTVVNPDSNL-YFYWLLIITCCVLYNLWTLIVRQSFPELQENGA 78
C RRP KK ++P +NL Y WL + +N W + VR +FP +
Sbjct: 746 CKFKRRPW---KKYQFPQSIDPLTNLMYILWLFFVVLAWNWNCWLIPVRWAFPYQTPDNI 802
Query: 79 KFWFFCDYTTDTFIVLDILV-QFRTGYLEQGN 109
W DY D +LDI V Q R ++ G+
Sbjct: 803 HLWLLMDYLCDLIYLLDITVFQMRLQFVRGGD 834
>sp|Q9JKA8|HCN3_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 3 OS=Rattus norvegicus GN=Hcn3
PE=2 SV=1
Length = 780
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW LI+ ++ NL L V +F +E + W + +D
Sbjct: 76 RVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITF--FKEENSPPWIVFNVLSD 133
Query: 90 TFIVLDILVQFRTG-YLEQG 108
TF +LD+++ FRTG +E+G
Sbjct: 134 TFFLLDLVLNFRTGIVVEEG 153
>sp|O88705|HCN3_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 3 OS=Mus musculus GN=Hcn3 PE=1
SV=1
Length = 779
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW LI+ ++ NL L V +F +E + W + +D
Sbjct: 76 RVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITF--FKEENSPPWIVFNVLSD 133
Query: 90 TFIVLDILVQFRTG-YLEQG 108
TF +LD+++ FRTG +E+G
Sbjct: 134 TFFLLDLVLNFRTGIVVEEG 153
>sp|Q9P1Z3|HCN3_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 3 OS=Homo sapiens GN=HCN3 PE=2
SV=2
Length = 774
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW LI+ ++ NL L V +F +E + W + +D
Sbjct: 77 RVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITF--FKEENSPPWIVFNVLSD 134
Query: 90 TFIVLDILVQFRTG-YLEQG 108
TF +LD+++ FRTG +E+G
Sbjct: 135 TFFLLDLVLNFRTGIVVEEG 154
>sp|Q14028|CNGB1_HUMAN Cyclic nucleotide-gated cation channel beta-1 OS=Homo sapiens
GN=CNGB1 PE=1 SV=2
Length = 1251
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 20 CHAGRRPRCRRKKVHHSTVVNPDSNL-YFYWLLIITCCVLYNLWTLIVRQSFPELQENGA 78
C RP KK ++P +NL Y WL + +N W + VR +FP +
Sbjct: 632 CKFKHRPW---KKYQFPQSIDPLTNLMYVLWLFFVVMAWNWNCWLIPVRWAFPYQTPDNI 688
Query: 79 KFWFFCDYTTDTFIVLDILV-QFRTGYLEQGN 109
W DY D LDI V Q R ++ G+
Sbjct: 689 HHWLLMDYLCDLIYFLDITVFQTRLQFVRGGD 720
>sp|Q9TV66|HCN4_RABIT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Oryctolagus cuniculus
GN=HCN4 PE=2 SV=1
Length = 1175
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW L + ++ NL + V +F ++ W + +DTF ++D++
Sbjct: 255 IIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITF--FKDENTTPWIVFNVVSDTFFLIDLV 312
Query: 98 VQFRTGYLEQGNNN 111
+ FRTG + + N +
Sbjct: 313 LNFRTGIVVEDNTD 326
>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Rattus norvegicus GN=Hcn4
PE=2 SV=1
Length = 1198
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW L + ++ NL + V +F ++ W + +DTF ++D++
Sbjct: 254 IIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITF--FKDENTTPWIVFNVVSDTFFLIDLV 311
Query: 98 VQFRTGYLEQGN 109
+ FRTG + + N
Sbjct: 312 LNFRTGIVVEDN 323
>sp|O70507|HCN4_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4 PE=1
SV=2
Length = 1186
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW L + ++ NL + V +F ++ W + +DTF ++D++
Sbjct: 254 IIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITF--FKDENTTPWIVFNVVSDTFFLIDLV 311
Query: 98 VQFRTGYLEQGN 109
+ FRTG + + N
Sbjct: 312 LNFRTGIVVEDN 323
>sp|Q9Y3Q4|HCN4_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 4 OS=Homo sapiens GN=HCN4 PE=1
SV=1
Length = 1203
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW L + ++ NL + V +F ++ W + +DTF ++D++
Sbjct: 254 IIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITF--FKDENTTPWIVFNVVSDTFFLIDLV 311
Query: 98 VQFRTGYLEQGN 109
+ FRTG + + N
Sbjct: 312 LNFRTGIVVEDN 323
>sp|Q9JJZ9|CNGB3_MOUSE Cyclic nucleotide-gated cation channel beta-3 OS=Mus musculus
GN=Cngb3 PE=1 SV=1
Length = 694
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 45 LYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI-LVQFRTG 103
+Y WLL++T +N W L VR FP + +W D D + DI L+Q R
Sbjct: 209 VYLLWLLLVTIAYNWNCWLLPVRLVFPCQTPDNKNYWIITDIVCDIIYLCDILLIQPRLQ 268
Query: 104 YLEQG 108
++ G
Sbjct: 269 FVRGG 273
>sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Rattus norvegicus GN=Hcn1
PE=2 SV=1
Length = 910
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW LI+ ++ NL + V +F E W + +DT +LD++
Sbjct: 123 IIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITF--FTEQTTTPWIIFNVASDTVFLLDLI 180
Query: 98 VQFRTGYLEQ 107
+ FRTG + +
Sbjct: 181 MNFRTGTVNE 190
>sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Oryctolagus cuniculus
GN=HCN1 PE=2 SV=2
Length = 822
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW LI+ ++ NL + V +F E W + +DT +LD++
Sbjct: 70 IIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITF--FTEQTTTPWIIFNVASDTVFLLDLI 127
Query: 98 VQFRTGYLEQ 107
+ FRTG + +
Sbjct: 128 MNFRTGTVNE 137
>sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Mus musculus GN=Hcn1 PE=1
SV=1
Length = 910
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW LI+ ++ NL + V +F E W + +DT +LD++
Sbjct: 123 IIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITF--FTEQTTTPWIIFNVASDTVFLLDLI 180
Query: 98 VQFRTGYLEQ 107
+ FRTG + +
Sbjct: 181 MNFRTGTVNE 190
>sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 1 OS=Homo sapiens GN=HCN1 PE=2
SV=3
Length = 890
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P S+ FYW LI+ ++ NL + V +F E W + +DT +LD++
Sbjct: 134 IIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITF--FTEQTTTPWIIFNVASDTVFLLDLI 191
Query: 98 VQFRTGYLEQ 107
+ FRTG + +
Sbjct: 192 MNFRTGTVNE 201
>sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Rattus norvegicus GN=Hcn2
PE=2 SV=3
Length = 863
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW + ++ NL + V +F ++ W + +D
Sbjct: 168 RVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITF--FKDETTAPWIVFNVVSD 225
Query: 90 TFIVLDILVQFRTGYLEQGN 109
TF ++D+++ FRTG + + N
Sbjct: 226 TFFLMDLVLNFRTGIVIEDN 245
>sp|O88703|HCN2_MOUSE Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Mus musculus GN=Hcn2 PE=1
SV=1
Length = 863
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW + ++ NL + V +F ++ W + +D
Sbjct: 168 RVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITF--FKDETTAPWIVFNVVSD 225
Query: 90 TFIVLDILVQFRTGYLEQGN 109
TF ++D+++ FRTG + + N
Sbjct: 226 TFFLMDLVLNFRTGIVIEDN 245
>sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2 OS=Homo sapiens GN=HCN2 PE=1
SV=3
Length = 889
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTD 89
R K + +++P S+ FYW + ++ NL + V +F ++ W + +D
Sbjct: 195 RVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITF--FKDETTAPWIVFNVVSD 252
Query: 90 TFIVLDILVQFRTGYLEQGN 109
TF ++D+++ FRTG + + N
Sbjct: 253 TFFLMDLVLNFRTGIVIEDN 272
>sp|Q03611|CNG_CAEEL Cyclic nucleotide-gated cation channel OS=Caenorhabditis elegans
GN=tax-4 PE=2 SV=3
Length = 733
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 48/128 (37%)
Query: 29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSF-----PELQE-----NGA 78
R +K + +P ++ ++YW ++T +YNL +I RQ F P Q NG
Sbjct: 104 RIRKYLANYTQDPSTDNFYYWTCVVTVAYIYNLLFVIARQVFNDLIGPSSQSLCRFYNGT 163
Query: 79 --------------------------------------KFWFFCDYTTDTFIVLDILVQF 100
W F D D ++D + +
Sbjct: 164 LNSTTQVECTYNMLTNMKEMPTYSQYPDLGWSKYWHFRMLWVFFDLLMDCVYLIDTFLNY 223
Query: 101 RTGYLEQG 108
R GY++QG
Sbjct: 224 RMGYMDQG 231
>sp|Q8MJD7|CNGB3_CANFA Cyclic nucleotide-gated cation channel beta-3 OS=Canis familiaris
GN=CNGB3 PE=1 SV=1
Length = 782
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 53 ITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD-ILVQFRTGYLEQGN 109
+T +N W + +R FP + +WF D T D + D +L+Q R +++ G+
Sbjct: 220 VTIAYNWNCWLIPLRLVFPYQTPDNTHYWFITDITCDIIYLCDMLLIQPRLQFIKGGD 277
>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2
Length = 857
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 22 AGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTL-----IVRQSFPELQEN 76
+ RR + RR VV+P + Y W + V+Y W +R+ P L
Sbjct: 39 SNRRVKLRR------FVVSPYDHKYRIWEAFLVVLVVYTAWVSPFEFGFLRKPRPPLS-- 90
Query: 77 GAKFWFFCDYTTDTFIVLDILVQFRTGYLEQ 107
D + F +DI++ F GYL++
Sbjct: 91 ------ITDNIVNAFFAIDIIMTFFVGYLDK 115
>sp|Q55F11|Y8928_DICDI PA-phosphatase related-family protein DDB_G0268928 OS=Dictyostelium
discoideum GN=DDB_G0268928 PE=3 SV=1
Length = 551
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 22/88 (25%)
Query: 33 VHHSTVVNPDSNL--------------YFYWLLIITCCVLYNLWTLIVRQSFPELQENGA 78
V ST++ PDS + Y+ W + +LYNLW + + P+ Q+
Sbjct: 327 VDESTIIGPDSFIGKLSTEILQLSYISYYIWGYFMEIYILYNLWRCHLSKD-PQ-QQKMM 384
Query: 79 KFW------FFCDYTTDTFIVLDILVQF 100
W F C + + FIV I + F
Sbjct: 385 PIWDQRLKMFICSWISTYFIVFSINLIF 412
>sp|A2ZX97|KAT6_ORYSJ Potassium channel KAT6 OS=Oryza sativa subsp. japonica
GN=Os01g0718700 PE=3 SV=1
Length = 593
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
VVNP + Y +W + VLY W + ++++ + + D F +DI
Sbjct: 24 VVNPHTCSYRWWQKFLIVLVLYTAWASPFELA---MEKSASAALAVTELVVDAFFAVDIA 80
Query: 98 VQFRTGY 104
V F Y
Sbjct: 81 VSFFVAY 87
>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica
GN=Os05g0428700 PE=2 SV=1
Length = 855
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 13 GQPDDGNCHAGRR-PRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFP 71
G P G+ +G P RR V++P + Y W + V Y+ W +F
Sbjct: 44 GVPAGGHAQSGHAGPNDRR-------VISPLDSRYRCWDTFMVVLVAYSAWVYPFEVAFM 96
Query: 72 ELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLE 106
G D D F +DI++ F Y++
Sbjct: 97 NASPKGG--LEVADIVVDLFFAVDIVLTFFVAYID 129
>sp|Q91ZC4|MRGA8_MOUSE Mas-related G-protein coupled receptor member A8 OS=Mus musculus
GN=Mrgpra8 PE=2 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 80 FWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYY 118
FWF + D FIVLD + F + L N+ N I Y+
Sbjct: 225 FWFLSPWIEDRFIVLDYRLFFASVVLTVVNSCANPIIYF 263
>sp|Q39128|KAT1_ARATH Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2
Length = 677
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P + Y W + + V+Y+ W + +F +++ F D + F +DI+
Sbjct: 51 IISPFNPRYRAWEMWLVLLVIYSAWICPFQFAFITYKKDAI---FIIDNIVNGFFAIDII 107
Query: 98 VQFRTGYLE 106
+ F YL+
Sbjct: 108 LTFFVAYLD 116
>sp|P92960|KAT3_ARATH Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1
Length = 662
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 46 YFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYL 105
Y W L + V Y+ W + +F + E D D F +DI++ F YL
Sbjct: 86 YRLWELFLVILVGYSAWASLFELAFEKAAEGAL---LTIDLVVDFFFAVDIILTFFVSYL 142
Query: 106 E 106
+
Sbjct: 143 D 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,424,249
Number of Sequences: 539616
Number of extensions: 2177704
Number of successful extensions: 4993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4935
Number of HSP's gapped (non-prelim): 55
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)