Query psy1121
Match_columns 122
No_of_seqs 109 out of 402
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:55:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0499|consensus 99.8 4.5E-20 9.8E-25 159.7 5.9 88 35-122 216-305 (815)
2 PLN03192 Voltage-dependent pot 99.7 2.8E-17 6.1E-22 146.3 10.6 89 32-122 47-137 (823)
3 KOG0498|consensus 99.7 3.5E-17 7.6E-22 144.9 8.1 91 32-122 63-162 (727)
4 KOG0500|consensus 99.6 8E-17 1.7E-21 136.9 0.9 71 52-122 2-72 (536)
5 KOG0501|consensus 99.6 5.5E-16 1.2E-20 134.8 3.9 95 27-122 196-293 (971)
6 PF08412 Ion_trans_N: Ion tran 99.2 8.2E-12 1.8E-16 83.4 3.1 61 12-72 5-72 (77)
7 KOG2302|consensus 62.2 5.1 0.00011 38.7 1.9 66 33-99 1101-1176(1956)
8 PF15106 TMEM156: TMEM156 prot 38.7 47 0.001 26.4 3.7 49 20-68 147-197 (226)
9 PF05279 Asp-B-Hydro_N: Aspart 29.7 59 0.0013 26.0 3.0 24 42-65 8-31 (243)
10 PF09801 SYS1: Integral membra 24.0 1.4E+02 0.003 21.8 3.9 42 44-90 83-124 (144)
11 KOG3966|consensus 21.5 2E+02 0.0043 24.1 4.6 26 47-72 94-122 (360)
No 1
>KOG0499|consensus
Probab=99.80 E-value=4.5e-20 Score=159.70 Aligned_cols=88 Identities=27% Similarity=0.605 Sum_probs=84.1
Q ss_pred CCeEEcCCC-chHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHh-hhccceeEeCCeEee
Q psy1121 35 HSTVVNPDS-NLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL-VQFRTGYLEQGNNNN 112 (122)
Q Consensus 35 ~~~vIdP~s-~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~-l~frtgy~e~G~~V~ 112 (122)
-+..|||++ ++|..|+++|+++.+||+|+||+|++||.+..++..+|+++||+||+||++||+ ++.|..|+.+|.+|.
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik 295 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIK 295 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEE
Confidence 356899998 899999999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred chHHHHhhhC
Q psy1121 113 NHITYYERQL 122 (122)
Q Consensus 113 D~~~I~~r~~ 122 (122)
|.+..++||+
T Consensus 296 ~kndtrk~Yl 305 (815)
T KOG0499|consen 296 DKNDTRKHYL 305 (815)
T ss_pred echHHHHHHH
Confidence 9999999995
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.72 E-value=2.8e-17 Score=146.29 Aligned_cols=89 Identities=18% Similarity=0.319 Sum_probs=79.8
Q ss_pred cccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccceeEeC--Ce
Q psy1121 32 KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQ--GN 109 (122)
Q Consensus 32 ~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy~e~--G~ 109 (122)
.+.+.++|+|.++++.+|+.+++++++|++|++|++++|... .....|.++|+++|++|++||+++|+|+|+++ |.
T Consensus 47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~--~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~ 124 (823)
T PLN03192 47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA--SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQL 124 (823)
T ss_pred cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC--CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcE
Confidence 467789999999999999999999999999999999999632 22346889999999999999999999999976 57
Q ss_pred EeechHHHHhhhC
Q psy1121 110 NNNNHITYYERQL 122 (122)
Q Consensus 110 ~V~D~~~I~~r~~ 122 (122)
+|+|+++|++||+
T Consensus 125 lV~d~~~I~~~Yl 137 (823)
T PLN03192 125 LVRDRKKIAVRYL 137 (823)
T ss_pred EEeCHHHHHHHHH
Confidence 9999999999995
No 3
>KOG0498|consensus
Probab=99.70 E-value=3.5e-17 Score=144.87 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=81.0
Q ss_pred cccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhcccccccc-------CchhhhHHHHHHHHHHHHHHhhhcccee
Q psy1121 32 KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQEN-------GAKFWFFCDYTTDTFIVLDILVQFRTGY 104 (122)
Q Consensus 32 ~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~-------~~~~w~~lD~~~DiifllDI~l~frtgy 104 (122)
.++..++|||.|+++..|+.+++++++|++|+.|+.++|+..+.+ ....|.++|.++|++|++||++||||+|
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 455667999999999999999999999999999999999865432 3467999999999999999999999999
Q ss_pred Ee-CC-eEeechHHHHhhhC
Q psy1121 105 LE-QG-NNNNNHITYYERQL 122 (122)
Q Consensus 105 ~e-~G-~~V~D~~~I~~r~~ 122 (122)
+. ++ ++|.||++|++||+
T Consensus 143 v~~~s~elV~dpk~IA~rYl 162 (727)
T KOG0498|consen 143 VDPSSYELVDDPKKIAKRYL 162 (727)
T ss_pred ECCCCceeeeCHHHHHHHHH
Confidence 95 35 59999999999996
No 4
>KOG0500|consensus
Probab=99.62 E-value=8e-17 Score=136.88 Aligned_cols=71 Identities=37% Similarity=0.565 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccceeEeCCeEeechHHHHhhhC
Q psy1121 52 IITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL 122 (122)
Q Consensus 52 vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy~e~G~~V~D~~~I~~r~~ 122 (122)
+++++++||+|+++.|.+|++++..+...|+++|+++|++|++||++++||||+|+|++|+|.+|+++||.
T Consensus 2 ~vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~ 72 (536)
T KOG0500|consen 2 FVSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYV 72 (536)
T ss_pred eEEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHH
Confidence 46789999999999999999999888899999999999999999999999999999999999999999983
No 5
>KOG0501|consensus
Probab=99.59 E-value=5.5e-16 Score=134.82 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=84.3
Q ss_pred cccccc--ccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhcccee
Q psy1121 27 RCRRKK--VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGY 104 (122)
Q Consensus 27 ~~~r~~--~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy 104 (122)
++-||+ |.++.+|-+++.|+-.|+++++++.+|.+|++|+-++|...+. ++..|+++|-+.|+||++||++||+|+|
T Consensus 196 PQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~-~~vs~lvvDSiVDVIF~vDIvLNFHTTF 274 (971)
T KOG0501|consen 196 PQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR-NNVSWLVVDSIVDVIFFVDIVLNFHTTF 274 (971)
T ss_pred hhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc-CceeEEEecchhhhhhhhhhhhhcceee
Confidence 344444 6678899999999999999999999999999999999985443 4588999999999999999999999999
Q ss_pred E-eCCeEeechHHHHhhhC
Q psy1121 105 L-EQGNNNNNHITYYERQL 122 (122)
Q Consensus 105 ~-e~G~~V~D~~~I~~r~~ 122 (122)
+ -+|++|.||+-||.-|+
T Consensus 275 VGPgGEVvsdPkvIRmNYl 293 (971)
T KOG0501|consen 275 VGPGGEVVSDPKVIRMNYL 293 (971)
T ss_pred ecCCCceecChhHHhHHHH
Confidence 9 57999999999998775
No 6
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=99.21 E-value=8.2e-12 Score=83.38 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=52.1
Q ss_pred CCCCCCCCccC---CC----CCccccccccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1121 12 SGQPDDGNCHA---GR----RPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPE 72 (122)
Q Consensus 12 ~~~~~~~~~~~---~~----~~~~~r~~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~ 72 (122)
-.||..++-.. |+ .+|+.|+++.+.++|||.|.++.+|++++++.++||++++|++++|..
T Consensus 5 ~~~p~~nk~sl~~f~S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~ 72 (77)
T PF08412_consen 5 LLQPGDNKFSLRVFGSKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFS 72 (77)
T ss_pred hhccccCHHHHHHHccHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEec
Confidence 45777777322 55 368888889999999999999999999999999999999999999973
No 7
>KOG2302|consensus
Probab=62.23 E-value=5.1 Score=38.70 Aligned_cols=66 Identities=8% Similarity=0.235 Sum_probs=41.4
Q ss_pred ccCCeEEcCCCchHH---------HHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHH-HHHHHHHHHHHhhh
Q psy1121 33 VHHSTVVNPDSNLYF---------YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCD-YTTDTFIVLDILVQ 99 (122)
Q Consensus 33 ~~~~~vIdP~s~~~~---------~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD-~~~DiifllDI~l~ 99 (122)
....+.+.|.++|+. ..+.+|++.++.|+++|.+ ..|........+.+++++ |+.-.||++.+.++
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtial-erp~i~~~s~EriFltlsnyIFtaIfV~Em~lK 1176 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIAL-ERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLK 1176 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHh-cccccccCcceEEEEEecchHHHHHHHHHHHHH
Confidence 334568999998865 4567888999999999753 344322222234444444 66666666665543
No 8
>PF15106 TMEM156: TMEM156 protein family
Probab=38.73 E-value=47 Score=26.36 Aligned_cols=49 Identities=12% Similarity=0.324 Sum_probs=33.4
Q ss_pred ccCCC-CCcccccc-ccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q psy1121 20 CHAGR-RPRCRRKK-VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68 (122)
Q Consensus 20 ~~~~~-~~~~~r~~-~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rl 68 (122)
|++++ .-.|..=+ ....-+=+|.-..++.|-.+|+++++.-+++|+..+
T Consensus 147 C~~me~~NnC~~ISL~Lemdvkn~~CsmKITWYvLVllVfiflii~iI~KI 197 (226)
T PF15106_consen 147 CRIMEYLNNCTHISLHLEMDVKNSTCSMKITWYVLVLLVFIFLIILIIYKI 197 (226)
T ss_pred hhhhcCCCccEEEEEEEEecccCceeehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 65555 23443322 223446667778899999999999999888887654
No 9
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=29.65 E-value=59 Score=26.04 Aligned_cols=24 Identities=13% Similarity=0.527 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Q psy1121 42 DSNLYFYWLLIITCCVLYNLWTLI 65 (122)
Q Consensus 42 ~s~~~~~W~~vv~~~vlYn~i~iP 65 (122)
+++..+.|.+++.++..|.+..|.
T Consensus 8 ~G~~~~~~~~~~~~~~~~~~~~~~ 31 (243)
T PF05279_consen 8 SGSSFFTWFLVLALLGVWSSVAVV 31 (243)
T ss_pred CCCchHHHHHHHHHHHHHHhhHhh
Confidence 455688999999999998888775
No 10
>PF09801 SYS1: Integral membrane protein S linking to the trans Golgi network; InterPro: IPR019185 Members of this family are integral membrane proteins involved in protein trafficking between the late Golgi and endosome. They may also serve as a receptor for ADP-ribosylation factor-related protein 1 (ARFRP1) []. Sys1p is a small integral membrane protein with four predicted transmembrane domains that localises to the Trans Golgi network TGN in yeast and human cells [].
Probab=23.97 E-value=1.4e+02 Score=21.77 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHH
Q psy1121 44 NLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90 (122)
Q Consensus 44 ~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~Di 90 (122)
+.+..||..+++.+++-.+...+...|| .+..|..+..++=+
T Consensus 83 R~K~~lDFa~Tlh~iHli~~~~y~~~fP-----~~~~WW~~~~~~~~ 124 (144)
T PF09801_consen 83 RSKLCLDFALTLHFIHLIICWIYTGGFP-----TSFSWWLLQILSSA 124 (144)
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHH
Confidence 3467889999998888888887777777 34567766666543
No 11
>KOG3966|consensus
Probab=21.52 E-value=2e+02 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=19.3
Q ss_pred HHHHH---HHHHHHHHHHHHhhhhhcccc
Q psy1121 47 FYWLL---IITCCVLYNLWTLIVRQSFPE 72 (122)
Q Consensus 47 ~~W~~---vv~~~vlYn~i~iP~rlaF~~ 72 (122)
-.|.. .++++++||+.+-.+.++|..
T Consensus 94 c~wngg~~w~s~llf~~v~ipiL~~~~s~ 122 (360)
T KOG3966|consen 94 CLWNGGAMWISFLLFWQVCIPILGLFFSF 122 (360)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhe
Confidence 35654 578889999998877777753
Done!