Query psy1121
Match_columns 122
No_of_seqs 109 out of 402
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:56:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 96.9 0.0011 3.6E-08 49.2 4.7 56 47-103 8-63 (223)
2 2r9r_B Paddle chimera voltage 92.8 0.17 6E-06 42.4 5.8 63 40-103 174-263 (514)
3 2kyh_A KVAP, voltage-gated pot 76.2 4.5 0.00015 28.4 4.9 55 48-103 22-76 (147)
4 1ors_C Potassium channel; volt 76.0 5.2 0.00018 27.2 5.1 55 47-102 6-60 (132)
5 3rvy_A ION transport protein; 59.1 17 0.00058 27.1 5.3 54 47-101 30-83 (285)
6 3beh_A MLL3241 protein; transm 51.1 11 0.00037 29.0 3.1 58 39-100 3-60 (355)
7 4dxw_A Navrh, ION transport pr 44.3 29 0.001 24.9 4.4 53 47-101 12-64 (229)
8 1aqs_A Cu-MT, Cu-metallothione 16.4 67 0.0023 18.6 1.5 19 13-31 29-47 (53)
9 3ixz_A Potassium-transporting 13.0 4.6E+02 0.016 23.4 6.7 65 35-100 953-1018(1034)
10 3ar4_A Sarcoplasmic/endoplasmi 10.5 2.9E+02 0.0099 24.5 4.6 71 30-100 917-987 (995)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=96.90 E-value=0.0011 Score=49.17 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccce
Q psy1121 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTG 103 (122)
Q Consensus 47 ~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtg 103 (122)
..|+.++.+++++|.+++++....+ .+.+....|..+|++++++|.+|+++++.++
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~ 63 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTMQ-LSGEYLVRLYLVDLILVIILWADYAYRAYKS 63 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3589999999999999987764432 3344567888999999999999999999986
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=92.80 E-value=0.17 Score=42.39 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=46.9
Q ss_pred cCC-CchHHHHHHHHHHHHHHHHHHhhhhhccccccc--------------------------cCchhhhHHHHHHHHHH
Q psy1121 40 NPD-SNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE--------------------------NGAKFWFFCDYTTDTFI 92 (122)
Q Consensus 40 dP~-s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~--------------------------~~~~~w~~lD~~~Diif 92 (122)
+|+ |..-.++..+++++++-|++++.+.- ++..+. .....|..+|+++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 565 45678889999999999999887653 322111 13456889999999999
Q ss_pred HHHHhhhccce
Q psy1121 93 VLDILVQFRTG 103 (122)
Q Consensus 93 llDI~l~frtg 103 (122)
.+|+++++.+.
T Consensus 253 tiE~ilR~~~~ 263 (514)
T 2r9r_B 253 SFEFLVRFFAC 263 (514)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99999988754
No 3
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=76.23 E-value=4.5 Score=28.39 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccce
Q psy1121 48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTG 103 (122)
Q Consensus 48 ~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtg 103 (122)
.|+..+.++++.|++++.+....+ .+.+....+..+|.++=++|.+|.++.+-..
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~-i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a 76 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ-LSGEYLVRLYLVDLILVIILWADYAYRAYKS 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 578888888888888887776554 2333345577899999999999999876543
No 4
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=76.03 E-value=5.2 Score=27.21 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccc
Q psy1121 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRT 102 (122)
Q Consensus 47 ~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frt 102 (122)
..++.++.++++.|.+.+.+.. +++.+.+....+..+|+++=++|.+|.++.+-.
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et-~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~ 60 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEY-TMQLSGEYLVRLYLVDLILVIILWADYAYRAYK 60 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888998988876553 443333334567789999999999999987653
No 5
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=59.14 E-value=17 Score=27.15 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhcc
Q psy1121 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFR 101 (122)
Q Consensus 47 ~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~fr 101 (122)
.+++.++.++++.|++.+.+.. ++.........+..+|+++=++|.+|.++++.
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~-~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~ 83 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLET-SKTFMQSFGVYTTLFNQIVITIFTIEIILRIY 83 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999998876443 33233333456678999999999999998654
No 6
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=51.12 E-value=11 Score=29.01 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=28.9
Q ss_pred EcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhc
Q psy1121 39 VNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQF 100 (122)
Q Consensus 39 IdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~f 100 (122)
+.|+|+.+ +.++.+.++-|++++.+. ++++.+.+.......+|.++=++|.+|+++++
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~ 60 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAATL 60 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 46777644 556666667777776655 45533322212222334444445778887764
No 7
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=44.26 E-value=29 Score=24.91 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhcc
Q psy1121 47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFR 101 (122)
Q Consensus 47 ~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~fr 101 (122)
.+.+.++.++++-|++.+.+.. .+ ...+.......+|+++=++|.++++++.-
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~-~~~~~~~~l~~~e~~~~~iF~~E~~lri~ 64 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YE-LDPLFLETIHLLDYGITIFFVIEILIRFI 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888898988875443 33 22222345667999999999999998643
No 8
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Probab=16.36 E-value=67 Score=18.56 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=7.5
Q ss_pred CCCCCCCccCCCCCccccc
Q psy1121 13 GQPDDGNCHAGRRPRCRRK 31 (122)
Q Consensus 13 ~~~~~~~~~~~~~~~~~r~ 31 (122)
+-.++.+|+-|..+++.++
T Consensus 29 gcnsddkcpcgnkseetkk 47 (53)
T 1aqs_A 29 GCNSDDKCPCGNKSEETKK 47 (53)
T ss_dssp TCSSSSSCCCCC-------
T ss_pred CCCCCCcCCCCCcchhhhh
Confidence 4445667777765555443
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=12.97 E-value=4.6e+02 Score=23.43 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=37.6
Q ss_pred CCeEEcCCCchHHHHHHHHHHHHHHHHHHhh-hhhccccccccCchhhhHHHHHHHHHHHHHHhhhc
Q psy1121 35 HSTVVNPDSNLYFYWLLIITCCVLYNLWTLI-VRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQF 100 (122)
Q Consensus 35 ~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP-~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~f 100 (122)
..|-..|.++...+|-.++.+++..-...+| +...|... .-....|+.+=.++=+++++|=+.++
T Consensus 953 s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~-~l~~~~w~~~~~~~~~~~~~~e~~K~ 1018 (1034)
T 3ixz_A 953 SAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFM-PIRFQWWLVPMPFGLLIFVYDEIRKL 1018 (1034)
T ss_pred cccccCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666655555666 44555422 22234577666666677777766553
No 10
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=10.54 E-value=2.9e+02 Score=24.55 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred cccccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhc
Q psy1121 30 RKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQF 100 (122)
Q Consensus 30 r~~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~f 100 (122)
|..+...+...|.++...+|-.++++++..-++.+|.-..+..........|+.+=.++=+.+++|-+.++
T Consensus 917 r~~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~ 987 (995)
T 3ar4_A 917 LSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKF 987 (995)
T ss_dssp SCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTHHHHHTTCCCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hccccchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Done!