Query psy1121
Match_columns 122
No_of_seqs 109 out of 402
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 20:56:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1orsc_ f.14.1.1 (C:) Potassiu 78.7 1.9 0.00013 28.0 5.1 53 48-101 7-59 (132)
2 d1zpsa1 b.168.1.1 (A:8-131) Ph 10.4 44 0.0032 21.5 1.1 11 15-25 90-100 (124)
3 d1kj6a_ g.9.1.1 (A:) Beta-defe 10.0 19 0.0014 19.2 -0.8 10 15-24 28-37 (45)
4 d1v5pa_ b.55.1.1 (A:) Tapp2 {M 8.3 34 0.0024 20.1 -0.2 19 27-45 27-45 (126)
5 d1dfna_ g.9.1.1 (A:) Defensin 6.1 72 0.0052 15.2 0.4 10 17-26 6-15 (30)
6 d1zyea1 c.47.1.10 (A:6-163) Pe 6.0 27 0.002 22.3 -1.7 17 33-49 117-133 (158)
7 d2i5nh2 f.23.10.1 (H:1-36) Pho 6.0 1.9E+02 0.014 14.1 2.2 14 46-59 18-31 (36)
8 d1bhua_ b.11.1.3 (A:) Streptom 5.7 1.3E+02 0.0093 17.8 1.6 26 19-44 3-28 (102)
9 d1uula_ c.47.1.10 (A:) Trypare 5.7 29 0.0021 23.2 -1.7 18 32-49 123-140 (194)
10 d2nn6d2 d.101.1.1 (D:147-235) 5.5 51 0.0037 18.6 -0.5 16 101-116 10-25 (89)
No 1
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=78.75 E-value=1.9 Score=28.01 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhcc
Q psy1121 48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFR 101 (122)
Q Consensus 48 ~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~fr 101 (122)
..+..++++++.|.+++.+.. .++.+.++...+..+|+++=++|.+|.++..-
T Consensus 7 ~~e~~i~~lillnvi~~~let-~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~ 59 (132)
T d1orsc_ 7 LVELGVSYAALLSVIVVVVEY-TMQLSGEYLVRLYLVDLILVIILWADYAYRAY 59 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999987655 34344455567789999999999999998764
No 2
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.37 E-value=44 Score=21.54 Aligned_cols=11 Identities=45% Similarity=1.105 Sum_probs=8.3
Q ss_pred CCCCCccCCCC
Q psy1121 15 PDDGNCHAGRR 25 (122)
Q Consensus 15 ~~~~~~~~~~~ 25 (122)
+.++.||.|++
T Consensus 90 q~G~aCHtG~~ 100 (124)
T d1zpsa1 90 QEGGACHTGYR 100 (124)
T ss_dssp ESSCSSTTSBS
T ss_pred cccceeecCCC
Confidence 34578999984
No 3
>d1kj6a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD3 [TaxId: 9606]}
Probab=9.98 E-value=19 Score=19.18 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=5.2
Q ss_pred CCCCCccCCC
Q psy1121 15 PDDGNCHAGR 24 (122)
Q Consensus 15 ~~~~~~~~~~ 24 (122)
+++|+|..-+
T Consensus 28 eQIG~CS~~G 37 (45)
T d1kj6a_ 28 EQIGKCSTRG 37 (45)
T ss_dssp EEEECSSSSS
T ss_pred hhhccccccc
Confidence 4455665544
No 4
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.29 E-value=34 Score=20.14 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=13.0
Q ss_pred ccccccccCCeEEcCCCch
Q psy1121 27 RCRRKKVHHSTVVNPDSNL 45 (122)
Q Consensus 27 ~~~r~~~~~~~vIdP~s~~ 45 (122)
...++.++..|++++....
T Consensus 27 ~~~k~WkrRwFvL~~~~~~ 45 (126)
T d1v5pa_ 27 ENSGKFLRRYFILDTQANC 45 (126)
T ss_dssp TCSSCEEEEEEEEETTTTE
T ss_pred CCCCCeeEEEEEEEcCCCe
Confidence 3444568899999875533
No 5
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.06 E-value=72 Score=15.21 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=6.4
Q ss_pred CCCccCCCCC
Q psy1121 17 DGNCHAGRRP 26 (122)
Q Consensus 17 ~~~~~~~~~~ 26 (122)
.-.|-+|+|+
T Consensus 6 ipac~agerr 15 (30)
T d1dfna_ 6 IPACIAGERR 15 (30)
T ss_dssp SSCCCTTCCE
T ss_pred cchhhcCccc
Confidence 3467778754
No 6
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.01 E-value=27 Score=22.26 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=13.0
Q ss_pred ccCCeEEcCCCchHHHH
Q psy1121 33 VHHSTVVNPDSNLYFYW 49 (122)
Q Consensus 33 ~~~~~vIdP~s~~~~~W 49 (122)
.+..|+|||++..++.|
T Consensus 117 ~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 117 LRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp CEEEEEECTTSBEEEEE
T ss_pred ccEEEEECCCCEEEEEE
Confidence 44689999999876544
No 7
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.00 E-value=1.9e+02 Score=14.06 Aligned_cols=14 Identities=50% Similarity=1.001 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy1121 46 YFYWLLIITCCVLY 59 (122)
Q Consensus 46 ~~~W~~vv~~~vlY 59 (122)
|--|+.+-+++++|
T Consensus 18 yaqwlviwtvvlly 31 (36)
T d2i5nh2 18 YAQWLVIWTVVLLY 31 (36)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45566666666555
No 8
>d1bhua_ b.11.1.3 (A:) Streptomyces metalloproteinase inhibitor, SMPI {Streptomyces nigrescens [TaxId: 1920]}
Probab=5.72 E-value=1.3e+02 Score=17.84 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=13.8
Q ss_pred CccCCCCCccccccccCCeEEcCCCc
Q psy1121 19 NCHAGRRPRCRRKKVHHSTVVNPDSN 44 (122)
Q Consensus 19 ~~~~~~~~~~~r~~~~~~~vIdP~s~ 44 (122)
.|++|+++--+..-.++...+-|.|.
T Consensus 3 scpagslctysgtglsgartvipasd 28 (102)
T d1bhua_ 3 SCPAGSLCTYSGTGLSGARTVIPASD 28 (102)
T ss_dssp CSCSSSBCCBBSSSSCBSCCCBSSST
T ss_pred CCCCCcceeeccCCcccceeeechhH
Confidence 37777765544444444444444443
No 9
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Probab=5.71 E-value=29 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.9
Q ss_pred cccCCeEEcCCCchHHHH
Q psy1121 32 KVHHSTVVNPDSNLYFYW 49 (122)
Q Consensus 32 ~~~~~~vIdP~s~~~~~W 49 (122)
..+..|+|||++..++.|
T Consensus 123 ~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 123 AYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp ECEEEEEECTTSBEEEEE
T ss_pred eEEEEEEECCCCeEEEEE
Confidence 456789999999876654
No 10
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.48 E-value=51 Score=18.59 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=12.0
Q ss_pred cceeEeCCeEeechHH
Q psy1121 101 RTGYLEQGNNNNNHIT 116 (122)
Q Consensus 101 rtgy~e~G~~V~D~~~ 116 (122)
..|...+|.++.||..
T Consensus 10 ~~~~~~dg~~vlDpt~ 25 (89)
T d2nn6d2 10 ACALDSDGTLVLDPTS 25 (89)
T ss_dssp EEEECTTCCEEESCCH
T ss_pred EEEEEcCCceeeCCCH
Confidence 4466678999999864
Done!