RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1121
(122 letters)
>gnl|CDD|149466 pfam08412, Ion_trans_N, Ion transport protein N-terminal. This
metazoan domain is found to the N-terminus of pfam00520
in voltage- and cyclic nucleotide-gated K/Na ion
channels.
Length = 77
Score = 27.0 bits (60), Expect = 1.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSF 70
+++P S+ FYW L + ++ NL L V +F
Sbjct: 38 IIHPYSDFRFYWDLCMLLLMMGNLIILPVGITF 70
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 28.0 bits (63), Expect = 1.2
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 66 VRQSFPELQENGAKFWFFCDYTTDTFI---VLDILVQFRTGYLEQGNNNNNH 114
VR FP L+ K + D + VLD + ++ Y N N H
Sbjct: 8 VRADFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYRRY-----NANVH 54
>gnl|CDD|130727 TIGR01666, YCCS, TIGR01666 family membrane protein. This model
represents a clade of sequences from gamma and beta
proteobacteria. These proteins are >700 amino acids long
and many have been annotated as putative membrane
proteins. The gene from Salmonella has been annotated as
a putative efflux transporter. The gene from E. coli has
the name yccS [Cell envelope, Other].
Length = 704
Score = 27.9 bits (62), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 SNLYFYWLLIITCCVLYNLWTLIVRQSFP--ELQENGAK 79
+ + ++++ + Y++ TLIV FP +QEN AK
Sbjct: 127 NVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQENLAK 165
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 27.5 bits (61), Expect = 2.3
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
+++P + Y +W ++ V Y+ W +F D D F +DI+
Sbjct: 53 IISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRG--LEIADNVVDLFFAVDIV 110
Query: 98 VQFRTGYLE 106
+ F Y++
Sbjct: 111 LTFFVAYID 119
>gnl|CDD|219348 pfam07248, DUF1431, Protein of unknown function (DUF1431). This
family contains a number of Drosophila melanogaster
proteins of unknown function. These contain several
conserved cysteine residues.
Length = 159
Score = 26.6 bits (59), Expect = 2.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 19 NCHAGRRPRCRRKK 32
+C GRRP C RK+
Sbjct: 105 SCRRGRRPSCCRKR 118
>gnl|CDD|214775 smart00689, DM6, Cysteine-rich domain currently specific to
Drosophila.
Length = 157
Score = 26.3 bits (58), Expect = 3.3
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 18 GNCHAGRRP-RCRRKK 32
+C A RRP C +++
Sbjct: 104 PSCRAVRRPSDCVKRR 119
>gnl|CDD|130728 TIGR01667, YCCS_YHJK, integral membrane protein, YccS/YhfK family.
This model represents two clades of putative
transmembrane proteins including the E. coli YccS and
YhfK proteins. The YccS hypothetical equivalog
(TIGR01666) is found in beta and gamma proteobacteria,
while the smaller YhfK group is only found in E. coli,
Salmonella and Yersinia. TMHMM on the 19 hits to this
model shows a consensus of 11 transmembrane helices
separated into two clusters, an N-terminal cluster of 6
and a central cluster of 5. This would indicate two
non-membrane domains one on each side of the membrane.
Length = 701
Score = 26.0 bits (57), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 50 LLIITCCVLYNLWTLIVRQSFPE--LQENGAKFWF 82
LLI+ + Y L TLI FP LQE+ ++ +
Sbjct: 134 LLILAGTLWYGLLTLIWFLLFPNQPLQESLSRLYR 168
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 25.6 bits (56), Expect = 8.5
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 14/68 (20%)
Query: 36 STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
TV + +L F W I +S + + + F Y + IV D
Sbjct: 768 ETVSDTSGSLEF--------------WNTIDSRSLIKYKTKPKENLVFSTYVNNITIVSD 813
Query: 96 ILVQFRTG 103
T
Sbjct: 814 NGTDTGTD 821
>gnl|CDD|221781 pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This
family has similarities to the fusaric acid resistance
protein family. The proteins are lodged in the inner
membrane.
Length = 284
Score = 25.2 bits (56), Expect = 9.8
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 39 VNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPE--LQENGAK 79
P + LL++ + Y L +L+ FP +Q++ A+
Sbjct: 65 AGPFPEWWQQPLLLLLGALWYGLLSLLWHLLFPNRPVQQSLAQ 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.474
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,330,310
Number of extensions: 531497
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.3 bits)