RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1121
         (122 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.16
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 11/49 (22%)

Query: 69  SFPELQENGAKFWFFCDYTTD-------TFIVLDILVQFRTGYLEQGNN 110
           +  EL     KF  +     +         ++   L +F   YL +GN+
Sbjct: 56  TPAELV---GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGND 100


>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
           antibiotic resistance, cell shape, peptidoglycan; 2.18A
           {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
          Length = 680

 Score = 28.3 bits (63), Expect = 0.65
 Identities = 5/35 (14%), Positives = 7/35 (20%), Gaps = 6/35 (17%)

Query: 22  AGRRPRCRRKKVHHSTVVNPD------SNLYFYWL 50
                    K  + S  +         SN Y    
Sbjct: 417 GSAPIYSWYKLAYGSFPITAVEALEYSSNAYVVQT 451


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.78
 Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 60/134 (44%)

Query: 25  RPRCRRKKVHHSTVVN---------------PDSNLYFYWLLIITCCVLYNLWTLIVRQS 69
           + +   +   H ++V+               P  + YFY  +       ++L  +     
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG------HHLKNI----- 484

Query: 70  FPELQENGAKFWFFCD-YTTDTFI----------------VLDILVQFRTGYLEQGNNNN 112
                E+  +   F   +    F+                +L+ L Q +  Y        
Sbjct: 485 -----EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-Y-------K 531

Query: 113 NHIT----YYERQL 122
            +I      YER +
Sbjct: 532 PYICDNDPKYERLV 545



 Score = 26.4 bits (57), Expect = 3.4
 Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 37/119 (31%)

Query: 17  DGNCHAGRRPRCRRKKVHHS-----TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFP 71
           DG             K+         V+ P      +  L +                FP
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----------------FP 382

Query: 72  E--------LQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL 122
                    L       WF    +     V+ ++ +     L +     + I+     L
Sbjct: 383 PSAHIPTILLS----LIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYL 433


>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A
           {Thermotoga maritima}
          Length = 340

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 6/29 (20%)

Query: 21  HAGRRPRCRRKKVHHSTVVNPDSNLYFYW 49
              R PR R    H   V N   N Y   
Sbjct: 194 LIQRMPRIRFGMAH---VFN---NFYSMG 216


>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
           methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
           OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
          Length = 703

 Score = 25.0 bits (55), Expect = 8.3
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 67  RQSFPELQENGAKFWF-FCDYTTDTFIVLD 95
           +  F E+ E  A  W    DY  DT + LD
Sbjct: 498 KGEFLEVTEYNAHLWVNLTDY-LDTGLFLD 526


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,014,105
Number of extensions: 105037
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 9
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)