RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1121
         (122 letters)



>gi|93140497|sp|P0C1A2.1|PELA_ERWCH(40-393:393) RecName:
           Full=Pectate lyase A; Flags: Precursor 
           gi|148449|gb|AAA24843.1| pectate lyase A, precursor (EC
           4.2.2.2)   gi|47168462|pdb|1OOC|A Chain A, Mutations In
           The T1.5 Loop Of Pectate Lyase A 
           gi|47168463|pdb|1OOC|B Chain B, Mutations In The T1.5
           Loop Of Pectate Lyase A   gi|47168541|pdb|1PE9|A Chain
           A, Mutations In The T1.5 Loop Of Pectate Lyase A 
           gi|47168542|pdb|1PE9|B Chain B, Mutations In The T1.5
           Loop Of Pectate Lyase A   gi|21730393|pdb|1JRG|A Chain
           A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
           Erwinia Chrysanthemi   gi|21730394|pdb|1JRG|B Chain B,
           Crystal Structure Of The R3 Form Of Pectate Lyase A,
           Erwinia Chrysanthemi   gi|21730403|pdb|1JTA|A Chain A,
           Crystal Structure Of Pectate Lyase A (C2 Form)  E=1e-123
           s/c=1.25 id=65% cov=97%
          Length = 350

 Score = 24.7 bits (53), Expect = 4.0
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)

Query: 21  HAGRRPRCRRKKVHHSTVVNPDSNLYFYW 49
              R PR R   +H     N   N++   
Sbjct: 227 VTERAPRVRYGSIH---SFN---NVFKGD 249


>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
          stercoraria [TaxId: 61]}
          Length = 144

 Score = 23.7 bits (51), Expect = 5.9
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 65 IVRQSFPELQENGAKF 80
          I++ + P L+E+G   
Sbjct: 8  IIKATVPVLKEHGVTI 23


>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
           reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 622

 Score = 24.3 bits (51), Expect = 6.1
 Identities = 9/58 (15%), Positives = 19/58 (32%)

Query: 33  VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90
                V N D  +++    + T  + + +           L+E G +        T+T
Sbjct: 167 AWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTET 224


>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 146

 Score = 23.8 bits (51), Expect = 6.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 65 IVRQSFPELQENGAKF 80
           V+ + P L E G K 
Sbjct: 9  TVKATIPLLVETGPKL 24


>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
          {Alcaligenes eutrophus [TaxId: 106590]}
          Length = 150

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 65 IVRQSFPELQENGAKF 80
          IV+ + P L E+G   
Sbjct: 9  IVKATAPVLAEHGYDI 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,089
Number of extensions: 21869
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 11
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)