BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11211
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 26/187 (13%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQM-----------YNSPYRSMLETIRTVYRTEGLVA 121
L G A + D I P D K RLQ+ ++ YR +L TI T+ RTEG +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 122 FYRSYTTQLAMNVPFQSIHFITYEVI--YYTIRTVYRTEGLVAFYRSYTTQLA------- 172
Y L + F S+ Y+ + +YT + + G S T LA
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPT 125
Query: 173 --MNVPFQSIHFIT----YEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITY 226
+ V FQ+ Y+ +T+ R EG+ ++ + +A N +TY
Sbjct: 126 DVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185
Query: 227 EVIYYTI 233
++I T+
Sbjct: 186 DLIKDTL 192
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 17/184 (9%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQMY-----NSPYRSMLETIRTVYRTEGLVAFYRSYT 127
LAG L + P DVVK R Q Y+S +E +T+ R EG+ ++ +
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 128 TQLAMNVPFQSIHFITYEVIYYT-IRTVYRTEGLVAFYRS------YTTQLAMNVPFQSI 180
+A N +TY++I T ++ T+ L + S TT +A V
Sbjct: 169 PNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT 228
Query: 181 HFIT-----YEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRT 235
++ Y + T+ R EG AFY+ + + + F+TYE + +
Sbjct: 229 RYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288
Query: 236 VYRT 239
Y++
Sbjct: 289 AYQS 292
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/257 (17%), Positives = 101/257 (39%), Gaps = 38/257 (14%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQMYNSP--------YRSMLETIRTVYRTEGLVAFYR 124
LAGG+A + + P + VK LQ+ ++ Y+ +++ + + + +G ++F+R
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 125 SYTTQLAMNVPFQSIHFI---TYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMN--VPFQS 179
+ P Q+++F Y+ I+ + V R + F+R + LA S
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIF--LGGVDRHK---QFWRYFAGNLASGGAAGATS 126
Query: 180 IHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRT 239
+ F+ Y + + R G A R +T + I ++++
Sbjct: 127 LCFV-YPLDFARTRLAADV-GKGAAQREFTG------------------LGNCITKIFKS 166
Query: 240 EGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPIAHMMXXXXXXXXXXXX 299
+GL Y+ + + + +++ +F Y+ + + ++ + I M
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLV 226
Query: 300 TTPLDVCKTFLNTQQSK 316
+ P D + + Q +
Sbjct: 227 SYPFDTVRRRMMMQSGR 243
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 237 YRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPI 283
Y+T+ +V F+ YT + P + F +++ + + ++ Y P+
Sbjct: 301 YKTKNIVEFHSDYTKIRSATFPGVQMKFALQKLLTKVADAAKGYKPV 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,270,398
Number of Sequences: 62578
Number of extensions: 312091
Number of successful extensions: 785
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)