Query psy11211
Match_columns 316
No_of_seqs 178 out of 1744
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:58:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 7.4E-47 2.5E-51 327.8 11.7 234 9-276 45-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.3E-45 7.8E-50 317.7 10.4 236 9-274 48-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 3.3E-43 1.1E-47 304.2 8.7 220 66-314 5-241 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.7E-42 1.3E-46 298.3 9.1 216 70-315 3-235 (303)
5 4b19_A PEPA1; toxin, toxin apo 48.7 6.2 0.00021 20.2 0.8 24 282-305 3-26 (30)
6 2acm_A Mucin-1; auto-catalytic 33.0 12 0.00041 22.6 0.5 20 227-246 40-59 (66)
7 2a3d_A Protein (de novo three- 27.0 81 0.0028 18.6 3.4 39 88-126 10-48 (73)
8 1g1e_B SIN3A; four-helix bundl 14.8 30 0.001 22.9 -0.3 28 88-115 16-43 (89)
9 1e91_A Paired amphipathic heli 13.3 30 0.001 22.8 -0.7 28 88-115 13-40 (85)
10 2f05_A Paired amphipathic heli 12.3 40 0.0014 23.2 -0.3 28 88-115 13-40 (105)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.4e-47 Score=327.79 Aligned_cols=234 Identities=21% Similarity=0.271 Sum_probs=206.1
Q ss_pred CCCCCHHHHHHHHHHhcCcccccccchHHHHhhhhhhhhHHHHhHHHHHHhcccccccchhHHHHHHHHHHHHHHhhccc
Q psy11211 9 QTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTLINNNVGYGLAGGMATMLHDGIMTP 88 (316)
Q Consensus 9 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~i~~P 88 (316)
..|+++++++++|+++||++|||||+.+++++.++..+++|++||.+|+.+.+.....+....+++|++||+++.++++|
T Consensus 45 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~P 124 (303)
T 2lck_A 45 AQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQP 124 (303)
T ss_dssp SSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCc
Confidence 47899999999999999999999999999999999999999999999999876533466788999999999999999999
Q ss_pred HHHHHHHHhcCCC-----CCCCHHHHHHHHHHHhchhhhhcccccchhcccccchhehhhhHHHHHHhhhhcc-c----c
Q psy11211 89 ADVVKQRLQMYNS-----PYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYR-T----E 158 (316)
Q Consensus 89 ~e~ik~r~q~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~-~----~ 158 (316)
+|+||+|+|++.. .|++.++++++|+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+... . .
T Consensus 125 ld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~ 204 (303)
T 2lck_A 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC 204 (303)
T ss_dssp HHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHH
T ss_pred HHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHH
Confidence 9999999999753 6899999999999999999999999999999999999999999999998865332 1 2
Q ss_pred chHHHHhhhhcccccccccccccccchhhHHHHHHHHHHhhchhhhhcchhhhhhccccccceeeeehHHHHHHHHHHHH
Q psy11211 159 GLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYR 238 (316)
Q Consensus 159 ~~~~~~~~~~~~~~~~~P~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~ 238 (316)
.+.++..+++++.++++|+|++|++. +.++ ...|+++++|+++|++
T Consensus 205 ~~~~g~~ag~~~~~~~~P~dvvktrl------------q~~~----------------------~~~y~~~~~~~~~i~~ 250 (303)
T 2lck_A 205 HFTSAFGAGFCTTVIASPVDVVKTRY------------MNSA----------------------LGQYHSAGHCALTMLR 250 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------TTCC----------------------SSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHH------------Hhcc----------------------ccccCCHHHHHHHHHH
Confidence 35566677777888899999988432 2111 1247889999999999
Q ss_pred hhchhhhhccccccccccccchhhhHHHHHHHHHhhCC
Q psy11211 239 TEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNP 276 (316)
Q Consensus 239 ~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~~ 276 (316)
+||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 251 ~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998863
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-45 Score=317.75 Aligned_cols=236 Identities=15% Similarity=0.210 Sum_probs=193.9
Q ss_pred CCCCCHHHHHHHHHHhcCcccccccchHHHHhhhhhhhhHHHHhHHHHHHh-cccccc----cchhHHHHHHHHHHHHHH
Q psy11211 9 QTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTF-TNRTLI----NNNVGYGLAGGMATMLHD 83 (316)
Q Consensus 9 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~----~~~~~~~~ag~~a~~~~~ 83 (316)
..|+|+++++++++++||++|||||+.+++++.++..+++|++||.+|+.+ .+.+.. .+....+++|++||+++.
T Consensus 48 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~ 127 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127 (297)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999954 322211 234678899999999999
Q ss_pred hhcccHHHHHHHHhcCC------CCCCCHHHHHHHHHHHhchhhhhcccccchhcccccchhehhhhHHHHHHhhhhccc
Q psy11211 84 GIMTPADVVKQRLQMYN------SPYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRT 157 (316)
Q Consensus 84 ~i~~P~e~ik~r~q~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~ 157 (316)
++++|+|+||+|+|++. ..|++.++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+....
T Consensus 128 ~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~ 207 (297)
T 1okc_A 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV 207 (297)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCS
T ss_pred HHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999974 358899999999999999999999999999999999999999999999977543322
Q ss_pred c---chHHHHhhhhcccccccccccccccchhhHHHHHHHHHHhhchhhhhcchhhhhhccccccceeeeehHHHHHHHH
Q psy11211 158 E---GLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIR 234 (316)
Q Consensus 158 ~---~~~~~~~~~~~~~~~~~P~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~~ 234 (316)
+ .+..+..++.++.++++|+|++|++. +.+.. .......|+++++|++
T Consensus 208 ~~~~~~~~g~~ag~~a~~~t~P~dvvktr~------------q~~~~-----------------~~~~~~~y~~~~~~~~ 258 (297)
T 1okc_A 208 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRM------------MMQSG-----------------RKGADIMYTGTVDCWR 258 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HTTTT-----------------CCGGGCSCSSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcChHHHHHHHH------------hhcCC-----------------CCCCCCCCCCHHHHHH
Confidence 2 24445556677778899999988432 21110 0001235788999999
Q ss_pred HHHHhhchhhhhccccccccccccchhhhHHHHHHHHHhh
Q psy11211 235 TVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTIT 274 (316)
Q Consensus 235 ~i~~~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~ 274 (316)
+|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 259 ~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 259 KIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999999999999995 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.3e-43 Score=304.19 Aligned_cols=220 Identities=16% Similarity=0.263 Sum_probs=186.0
Q ss_pred cchhHHHHHHHHHHHHHHhhcccHHHHHHHHhcCCC--------CCCCHHHHHHHHHHHhchhhhhcccccchhcccccc
Q psy11211 66 NNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMYNS--------PYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQ 137 (316)
Q Consensus 66 ~~~~~~~~ag~~a~~~~~~i~~P~e~ik~r~q~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 137 (316)
.+.+..+++|++||+++.++++|+|+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456788999999999999999999999999999742 589999999999999999999999999999999999
Q ss_pred hhehhhhHHHHHHh-hhhccc--------cchHHHHhhhhcccccccccccccccchhhHHHHHHHHHHhhchhhhhcch
Q psy11211 138 SIHFITYEVIYYTI-RTVYRT--------EGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSY 208 (316)
Q Consensus 138 ~~~f~~y~~~k~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~P~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 208 (316)
+++|.+||.+|+.+ ...... ..+.++..+++++.++++|+|++|++. +.+..
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl------------q~~~~------- 145 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRL------------AADVG------- 145 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHCCC-------
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH------------hcccc-------
Confidence 99999999999954 322111 124556666777788899999988432 21110
Q ss_pred hhhhhccccccceeeeehHHHHHHHHHHHHhhchhhhhccccccccccccchhhhHHHHHHHHHhhCCCCCCCchhhhhh
Q psy11211 209 TTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPIAHMMS 288 (316)
Q Consensus 209 ~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~ 288 (316)
.......|+++++++++|+++||++|||||+.++++|.+|+++++|.+||.+|+.+.+..+.+...++++
T Consensus 146 ----------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~ 215 (297)
T 1okc_A 146 ----------KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMI 215 (297)
T ss_dssp ----------SSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHH
T ss_pred ----------CCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHH
Confidence 0001235778999999999999999999999999999999999999999999999876656677889999
Q ss_pred hhhHhHHHHHhhcchhhhhhhhhccc
Q psy11211 289 GAISGGVAAAITTPLDVCKTFLNTQQ 314 (316)
Q Consensus 289 ~~~~~~~~~~~t~P~dvvktr~q~~~ 314 (316)
|+++|++++++++|+||||||||++.
T Consensus 216 g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 216 AQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 99999999999999999999999875
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.7e-42 Score=298.26 Aligned_cols=216 Identities=22% Similarity=0.269 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHhcCCC-----------CCCCHHHHHHHHHHHhchhhhhcccccchhcccccch
Q psy11211 70 GYGLAGGMATMLHDGIMTPADVVKQRLQMYNS-----------PYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQS 138 (316)
Q Consensus 70 ~~~~ag~~a~~~~~~i~~P~e~ik~r~q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 138 (316)
..+++|++|++++.++++|+|+||+|+|++.. .|++.++++++|+++||++|||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999743 5889999999999999999999999999999999999
Q ss_pred hehhhhHHHHHHhhhhccc----cchHHHHhhhhcccccccccccccccchhhHHHHHHHHHHhhchhhhhcchhhhhhc
Q psy11211 139 IHFITYEVIYYTIRTVYRT----EGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAM 214 (316)
Q Consensus 139 ~~f~~y~~~k~~~~~~~~~----~~~~~~~~~~~~~~~~~~P~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 214 (316)
++|.+||.+|+.+.+.... ..+.++..++.++.++++|+|++|++. +..+..
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl------------q~~~~~------------ 138 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF------------QAQARA------------ 138 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH------------HHSCSC------------
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHH------------hccccc------------
Confidence 9999999999988643111 235566677777888899999988422 211100
Q ss_pred cccccceeeeehHHHHHHHHHHHHhhchhhhhccccccccccccchhhhHHHHHHHHHhhCCCC--CCCchhhhhhhhhH
Q psy11211 215 NVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSR--SYNPIAHMMSGAIS 292 (316)
Q Consensus 215 ~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~~~r~~~~~~~~~~~ye~~~~~~~~~~--~~~~~~~~~~~~~~ 292 (316)
.....|.++++++++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+.. +++...++++|++|
T Consensus 139 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~a 212 (303)
T 2lck_A 139 ------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA 212 (303)
T ss_dssp ------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 0123577899999999999999999999999999999999999999999999987643 45667899999999
Q ss_pred hHHHHHhhcchhhhhhhhhcccC
Q psy11211 293 GGVAAAITTPLDVCKTFLNTQQS 315 (316)
Q Consensus 293 ~~~~~~~t~P~dvvktr~q~~~~ 315 (316)
|++++++++|+||||||||+++.
T Consensus 213 g~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 213 GFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999853
No 5
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=48.65 E-value=6.2 Score=20.18 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.0
Q ss_pred chhhhhhhhhHhHHHHHhhcchhh
Q psy11211 282 PIAHMMSGAISGGVAAAITTPLDV 305 (316)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~t~P~dv 305 (316)
..+++++..++|.+.+..+|-+|-
T Consensus 3 ifv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999998764
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=32.98 E-value=12 Score=22.57 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhchhhhh
Q psy11211 227 EVIYYTIRTVYRTEGLVAFY 246 (316)
Q Consensus 227 ~~~~~~~~~i~~~~G~~gly 246 (316)
+++++.+..||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888999999999998886
No 7
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=26.99 E-value=81 Score=18.62 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=21.7
Q ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHHHHHhchhhhhccc
Q psy11211 88 PADVVKQRLQMYNSPYRSMLETIRTVYRTEGLVAFYRSY 126 (316)
Q Consensus 88 P~e~ik~r~q~~~~~~~~~~~~~~~i~~~~G~~gly~G~ 126 (316)
-+..||+|+|.-+..-.-+...-++|..-+.-..-|+|-
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456789999986543334444445554444334445553
No 8
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=14.83 E-value=30 Score=22.94 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=22.7
Q ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy11211 88 PADVVKQRLQMYNSPYRSMLETIRTVYR 115 (316)
Q Consensus 88 P~e~ik~r~q~~~~~~~~~~~~~~~i~~ 115 (316)
=+..||.|.|.++..|+.+.+.++..-+
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 3678999999988888888888887644
No 9
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=13.32 E-value=30 Score=22.75 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=21.6
Q ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy11211 88 PADVVKQRLQMYNSPYRSMLETIRTVYR 115 (316)
Q Consensus 88 P~e~ik~r~q~~~~~~~~~~~~~~~i~~ 115 (316)
=++.||.|.|.++..|..+.+.++..-+
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3678999999987788888888875543
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=12.31 E-value=40 Score=23.18 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=22.2
Q ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy11211 88 PADVVKQRLQMYNSPYRSMLETIRTVYR 115 (316)
Q Consensus 88 P~e~ik~r~q~~~~~~~~~~~~~~~i~~ 115 (316)
=++.||.|.|.++..|..+.+.++..-+
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~ 40 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 3678999999988888888888876543
Done!