RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11211
(316 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 75.0 bits (185), Expect = 4e-17
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 66 NNNVGYGLAGGMATMLHDGIMTPADVVKQRLQM----YNSPYRSMLETIRTVYRTEGLVA 121
+ + LAGG+A + + P DVVK RLQ + Y+ +L+ + +Y+ EG+
Sbjct: 3 LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRG 62
Query: 122 FYRSYTTQLAMNVPFQSIHFITYEVI 147
Y+ L P +I+F TYE +
Sbjct: 63 LYKGLLPNLLRVAPAAAIYFGTYETL 88
Score = 52.3 bits (126), Expect = 7e-09
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MQSLTTSSQTG-RGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTF 59
+QS +G+ + F+ + +EG+ +G+ +L APA A+YF YE LK
Sbjct: 33 LQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
Query: 60 TNR 62
+
Sbjct: 93 LKK 95
Score = 43.0 bits (102), Expect = 1e-05
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 232 TIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTI 273
+ +Y+ EG+ Y+ L P +I+F TYE ++ +
Sbjct: 50 CFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 191 TIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVI 229
+ +Y+ EG+ Y+ L P +I+F TYE +
Sbjct: 50 CFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETL 88
Score = 37.6 bits (88), Expect = 0.001
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 279 SYNPIAHMMSGAISGGVAAAITTPLDVCKTFLNTQQSK 316
+ +A +++G I+G +AA +T PLDV KT L + +
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAG 39
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 50.3 bits (120), Expect = 3e-07
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 33 GVNAVILGAAPAHALYFSCYEYLKDTFT-NRTLINNNVGYGLAGGMATMLHDGIMTPADV 91
G+ ++G PA A ++ YE K T R I+ Y ++ +A + + P ++
Sbjct: 48 GILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEI 107
Query: 92 VKQRLQMYNSPYRSMLETIRTVYRTEGLVAFY-RSYTTQLAMNVPFQSIHFITYEVI 147
VKQ +Q+ S S+L+TI + + EGL +F +SY + +PF I + +E +
Sbjct: 108 VKQNMQV--SGNISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETL 162
Score = 45.7 bits (108), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 232 TIRTVY---RTEGLVAFY-RSYTTQLAMNVPFQSIHFITYEVMQT-----ITNPSRSYNP 282
++T+Y + EGL +F +SY + +PF I + +E ++ S+ Y
Sbjct: 120 VLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPS 179
Query: 283 IAHMMSGAISGGVAAAITTPLDVCKT 308
I + G ++GG+A +TTP+DV K+
Sbjct: 180 ITSAICGGLAGGIAGFLTTPVDVIKS 205
Score = 33.7 bits (77), Expect = 0.093
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 72 GLAGGMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEGLVAFYR 124
GLAGG+A L TP DV+K R +Y Y +ET+ + EG + FY+
Sbjct: 187 GLAGGIAGFL----TTPVDVIKSRQIIYGKSY---IETVTEIAE-EGYLTFYK 231
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 31.7 bits (72), Expect = 0.49
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 13 GMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTLINNNVGYG 72
G+ FR + ++GVL RG A ++ P A F+ +Y K+ F N +
Sbjct: 54 GIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPK---YNQKTDFW 110
Query: 73 -------LAGGMATMLHDGIMTPADVVKQRL-----QMYNSPYRSMLETIRTVYRTEGLV 120
L+GG+A I+ P D + RL + + + + + + + + G +
Sbjct: 111 KFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFL 170
Query: 121 AFYRSY 126
+ Y+ +
Sbjct: 171 SLYQGF 176
Score = 30.5 bits (69), Expect = 0.96
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 7 SSQTGRGMGEVFRGMV-------AQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDT- 58
+S G+G F G+ Q G L +G + G YF Y+ K
Sbjct: 142 ASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALL 201
Query: 59 FTNRTLINNNVGYGLAGGMATMLHDGIMT-PADVVKQRLQMYNSP-------YRSMLETI 110
F N N N+ Y A + G+++ P D V++R+ M + Y L+
Sbjct: 202 FGNDK--NTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCW 259
Query: 111 RTVYRTEGLVAFYR 124
+ + + EGL F++
Sbjct: 260 KKILKNEGLGGFFK 273
Score = 28.2 bits (63), Expect = 5.4
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 226 YEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNP--- 282
Y I R V + +G+++ +R T + P Q+ +F N YN
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNF---AFKDYFKNMFPKYNQKTD 108
Query: 283 -----IAHMMSGAISGGVAAAITTPLDVCKTFLNTQQSK 316
+++SG ++G + I PLD +T L + K
Sbjct: 109 FWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGK 147
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 30.3 bits (69), Expect = 1.3
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 13 GMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTLINNNVGYG 72
GMG G +A R G+ I+G AHA Y +F ++ V
Sbjct: 178 GMGSGICGAIAA----RDALGLKTRIVGVVSAHAP---AY---ALSFEAGRVVTTPVATT 227
Query: 73 LAGGMAT 79
LA GMA
Sbjct: 228 LADGMAC 234
>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related
3'-5' exonucleases [DNA replication, recombination, and
repair].
Length = 243
Score = 27.9 bits (62), Expect = 6.9
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 139 IHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTV 195
IH IT E++ + + F +A N F + F+ E I
Sbjct: 67 IHGITDEMLADAPKFAEVLPEFLDFIGGLRLLVAHNAAFD-VGFLRVESERLGIEIP 122
Score = 27.9 bits (62), Expect = 6.9
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 180 IHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTV 236
IH IT E++ + + F +A N F + F+ E I
Sbjct: 67 IHGITDEMLADAPKFAEVLPEFLDFIGGLRLLVAHNAAFD-VGFLRVESERLGIEIP 122
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 28.0 bits (63), Expect = 7.9
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 147 IYY---TIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFI-TYEVIYYTIRTVYRTEGLV 202
YY T TVY A Y ++ VP I I + Y + R V +
Sbjct: 87 TYYKIVTFTTVYAGWTYDAITNRYEDRVP--VPVYEIDLIDSKGQCYSSARYVRNGVYVA 144
Query: 203 AFYRSYTTQLAMNVPFQSIHFITYEVI-YYTIRTVYRTEGLVAFYRSYTT 251
R VP + +T Y+T + Y G + YR+ TT
Sbjct: 145 YHDRDEV---NKTVPLKPSDGLTPGSRRYHTTKETYAAPGWLWLYRTRTT 191
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 27.5 bits (62), Expect = 9.2
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 71 YGLAGGMATMLHDGIMTPADVVK----QRLQMYNSPYRSMLETIRTVYRTEGLV 120
LA A +L P ++ Y P MLE ++ + RTEG++
Sbjct: 230 AKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGIL 283
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.395
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,901,066
Number of extensions: 1511970
Number of successful extensions: 1630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 37
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)