RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11211
(316 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 88.1 bits (219), Expect = 3e-20
Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 17/240 (7%)
Query: 5 TTSSQTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTL 64
T +S RG+ MV EG G+ A + ++ Y+ +K +T +
Sbjct: 41 TAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE 100
Query: 65 INNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMYNS-----PYRSMLETIRTVYRTEGL 119
LAG L + P DVVK R Q Y+S +E +T+ R EG+
Sbjct: 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160
Query: 120 VAFYRSYTTQLAMNVPFQSIHFITYEVI-YYTIRTVYRTEGLVA-FYRSYTTQLA---MN 174
++ + +A N +TY++I ++ T+ L F ++ +
Sbjct: 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIA 220
Query: 175 VPF-------QSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYE 227
P + Y + T+ R EG AFY+ + + + F+TYE
Sbjct: 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Score = 82.7 bits (205), Expect = 2e-18
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 1 MQSLTTSSQTGR--GMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDT 58
Q+ + R E ++ + +EG+ +G + + A + Y+ +KDT
Sbjct: 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT 191
Query: 59 FTNRTLINNNVGY-----GLAGGMATMLHDGIMTPADVVKQRLQ-MYNSPYRSMLETIRT 112
L+ +++ AG T++ +P DVVK R Y S T
Sbjct: 192 LLKANLMTDDLPCHFTSAFGAGFCTTVI----ASPVDVVKTRYMNSALGQYHSAGHCALT 247
Query: 113 VYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYE 145
+ R EG AFY+ + + + F+TYE
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Score = 68.1 bits (167), Expect = 3e-13
Identities = 48/265 (18%), Positives = 74/265 (27%), Gaps = 71/265 (26%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQM-----------YNSPYRSMLETIRTVYRTEGLVA 121
L G A + D I P D K RLQ+ ++ YR +L TI T+ RTEG +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 122 FYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLA--------- 172
Y L + F S+ Y+ + + +
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVK---QFYTKGSEHAGIGSRLLAGSTTGALAVAVA 122
Query: 173 -----MNVPFQSIHFITYEVIY----YTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHF 223
+ V FQ+ Y +T+ R EG+ ++ + NV
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG----TSPNV------- 171
Query: 224 ITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPI 283
R + Y L +
Sbjct: 172 ---------ARNAIVNCAELVTYDLIKDTLLKANLMTD-------------------DLP 203
Query: 284 AHMMSGAISGGVAAAITTPLDVCKT 308
H S +G I +P+DV KT
Sbjct: 204 CHFTSAFGAGFCTTVIASPVDVVKT 228
Score = 33.8 bits (78), Expect = 0.052
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 285 HMMSGAISGGVAAAITTPLDVCKTFLNTQQ 314
+ + +A IT PLD K L Q
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQG 33
Score = 32.3 bits (74), Expect = 0.17
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 12 RGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTLINNNVGY 71
G M+ +EG +G L + + F YE LK +
Sbjct: 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 87.3 bits (217), Expect = 5e-20
Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 35/259 (13%)
Query: 1 MQSLTTSSQTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFT 60
++ + +G+ + + ++G L RG A ++ P AL F+ + K F
Sbjct: 40 ASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99
Query: 61 NRTLINNNVGYG-----LAGGMATMLHDGIMTPADVVKQRLQM------YNSPYRSMLET 109
+ +GG A + P D + RL + +
Sbjct: 100 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC 159
Query: 110 IRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTE----------- 158
I +++++GL Y+ + + + +++ +F Y+ T + +
Sbjct: 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYD----TAKGMLPDPKNVHIIVSWMI 215
Query: 159 ----GLVAFYRSYTTQLA----MNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTT 210
VA SY M + I Y R + + EG AF++ +
Sbjct: 216 AQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS 275
Query: 211 QLAMNVPFQSIHFITYEVI 229
+ + + + Y+ I
Sbjct: 276 NVLRGMG-GAFVLVLYDEI 293
Score = 86.9 bits (216), Expect = 7e-20
Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 46/253 (18%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQMYNS--------PYRSMLETIRTVYRTEGLVAFYR 124
LAGG+A + + P + VK LQ+ ++ Y+ +++ + + + +G ++F+R
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 125 SYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQS----- 179
+ P Q+++F + Y+ L R S
Sbjct: 72 GNLANVIRYFPTQALNFAFKDK--------YKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 180 --IHFITY--EVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRT 235
Y + R T+LA +V + + + I
Sbjct: 124 ATSLCFVYPLDFA-----------------R---TRLAADVGKGAAQ-REFTGLGNCITK 162
Query: 236 VYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPIAHMMSGAISGGV 295
+++++GL Y+ + + + +++ +F Y+ + + ++ + I M V
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV 222
Query: 296 AAAITTPLDVCKT 308
A ++ P D +
Sbjct: 223 AGLVSYPFDTVRR 235
Score = 58.0 bits (141), Expect = 7e-10
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 226 YEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTI------TNPSRS 279
Y+ I + + + +G ++F+R + P Q+++F + + I +
Sbjct: 50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFW 109
Query: 280 YNPIAHMMSGAISGGVAAAITTPLDVCKTFLNTQQSK 316
++ SG +G + PLD +T L K
Sbjct: 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 146
Score = 33.4 bits (77), Expect = 0.071
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 278 RSYNPIAHMMSGAISGGVAAAITTPLDVCKTFLNTQQS 315
++ + + ++G ++ ++ P++ K L Q +
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHA 40
Score = 31.8 bits (73), Expect = 0.23
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 1 MQSLTTSSQ-TGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKD 57
MQS + G + +R + EG +G + +L A Y+ +K
Sbjct: 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIKK 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-07
Identities = 64/322 (19%), Positives = 98/322 (30%), Gaps = 94/322 (29%)
Query: 28 LRPLR---G-VNAVILGAAPAHALYFSCYEYLKDTFTNRTLINNNVGYGLAGGMATMLHD 83
RPL G + V+L P A +F L++ F + L G A D
Sbjct: 6 TRPLTLSHGSLEHVLL--VP-TASFFI-ASQLQEQFN-KIL--PEPTEGFAA------DD 52
Query: 84 GIMTPAD--------VVKQRLQMYNSPYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVP 135
TPA+ V + +L L F Y L N
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC--------LTEFENCY---LEGN-- 99
Query: 136 FQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIH----F---ITYEVI 188
IH + +++ T+ +T+ L+ Y T ++ PF F
Sbjct: 100 --DIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 189 YYTI------RTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTV-----Y 237
I Y E L Y++Y + I F E + IRT
Sbjct: 156 LVAIFGGQGNTDDYFEE-LRDLYQTYHVLVG---DL--IKFSA-ETLSELIRTTLDAEKV 208
Query: 238 RTEGL--VAFYR--------SYTTQLAMNVPF----QSIHFITYEVMQTITNPSRSYNP- 282
T+GL + + Y + ++ P Q H Y V + + P
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTAKLLG----FTPG 261
Query: 283 -IAHMMSGAI--SGGV--AAAI 299
+ + GA S G+ A AI
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAI 283
Score = 34.3 bits (78), Expect = 0.063
Identities = 34/246 (13%), Positives = 74/246 (30%), Gaps = 82/246 (33%)
Query: 4 LTTSSQTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPA----HALYFSCYEYL---- 55
+ T+ G GE+ + G + L V AV + + L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 56 ---KDTFTNRTLINNNVGYGLAGGMATMLHDGIMTP----ADVVKQRLQ----------- 97
+ + N +L + + L +G+ +P +++ ++++Q
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENN------EGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 98 --------MYNSPYRSMLET--IRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVI 147
+ N ++++ + +++Y GL R ++ QS
Sbjct: 362 AGKQVEISLVNGA-KNLVVSGPPQSLY---GLNLTLRKAKAPSGLD---QS--------- 405
Query: 148 YYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQS------IHFITYEVIYYTIR-------- 193
R + L F + L + PF S I +++ +
Sbjct: 406 ----RIPFSERKLK-FSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 194 TVYRTE 199
VY T
Sbjct: 458 PVYDTF 463
Score = 27.7 bits (61), Expect = 7.0
Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 77/217 (35%)
Query: 9 QTGRGMGEVFRGMV------AQEGVLRPLRGVNAVILG---AAPAHALY----------- 48
+ G+ + E + M+ + + + +N + L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 49 --FSCYEYLKDTFTNRTLINNN-------VG-YG-LAGGMATMLHDGIMTPAD---VVKQ 94
+ +E LK + LI + +G Y LA +A +M+ VV
Sbjct: 1739 MEKAAFEDLKS----KGLIPADATFAGHSLGEYAALAS-LA-----DVMSIESLVEVVFY 1788
Query: 95 R-LQMYNSPYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRT 153
R + M + R E R+ Y G++ A+N P + + E + Y +
Sbjct: 1789 RGMTMQVAVPRD--ELGRSNY---GMI----------AIN-PGRVAASFSQEALQYVVER 1832
Query: 154 VY-RTEGLVAFYRSYTTQLA-MNVPFQSIHFITYEVI 188
V RT LV ++ NV Q V
Sbjct: 1833 VGKRTGWLV--------EIVNYNVENQQY------VA 1855
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 90/275 (32%)
Query: 73 LAGGM-ATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEGLV-AFYRSYTTQL 130
+ A + DG+ T + N + I + L A YR +L
Sbjct: 328 RRLSIIAESIRDGLATW-----DNWKHVN--CDKLTTIIESSL--NVLEPAEYRKMFDRL 378
Query: 131 AM-----NVPFQSIHFITYEVIYYTIRTV---YRTEGLVA------FYRSYTTQLAMNVP 176
++ ++P + I ++VI + V LV + L + V
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 177 F---QSIH--FITYEVIYYTIRTVYRTEGLVA------FYRSY------TTQLA-----M 214
++H + + Y I + ++ L+ FY S+ +
Sbjct: 439 LENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFY-SHIGHHLKNIEHPERMTLF 493
Query: 215 NVPFQSIHFITYEVIYYTIRTVYRTEGL-----VAFYRSYTT------------------ 251
+ F F+ ++ + + L + FY+ Y
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 252 ---------------QLAMNVPFQSIHFITYEVMQ 271
++A+ ++I ++ +Q
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 33.3 bits (75), Expect = 0.11
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 54 YLKDTFTNRTLINNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMY------NSP-YRSM 106
+L F + + +++ + +G + L L+ Y N P Y +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQ------------LKFYKPYICDNDPKYERL 544
Query: 107 LETIRT-VYRTEGLVAFYRSYTT---QLAMNVPFQSIHFITYEVIYY-TIRTVYR 156
+ I + + E + S T ++A+ E I+ + V R
Sbjct: 545 VNAILDFLPKIEENL--ICSKYTDLLRIALMAE--------DEAIFEEAHKQVQR 589
Score = 29.8 bits (66), Expect = 1.3
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 43/170 (25%)
Query: 45 HALYFSCYEYLKDTFTNRTLINNN-------VGYGLAGGMATMLHDGIMTPA---DV--V 92
H Y K ++ + +G+ L + D +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFL 503
Query: 93 KQRLQMYNSPYRSMLETIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIR 152
+Q+++ ++ + + + T+ + + FY+ Y N P YE + I
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLK----FYKPYICD---NDP-------KYERLVNAIL 549
Query: 153 T-VYRTEGLVAFYRSYTT---QLAMNVPFQSIHFITYEVIYY-TIRTVYR 197
+ + E + S T ++A+ E I+ + V R
Sbjct: 550 DFLPKIEENL--ICSKYTDLLRIALMAE--------DEAIFEEAHKQVQR 589
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron
tyrosinate interaction, metal binding protein; 1.39A
{Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB:
2ows_A 2owt_A
Length = 323
Score = 30.1 bits (68), Expect = 0.78
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 DTFTNRTLINNNVGYGLAGGMATMLHDGIMTPADVV 92
D F + I N + G + + +G +PADV+
Sbjct: 24 DAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVL 59
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A
{Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A
1si1_A
Length = 320
Score = 30.1 bits (68), Expect = 0.80
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 57 DTFTNRTLINNNVGYGLAGGMATMLHDGIMTPADVV 92
F T I N+ + G + + +G ++PADV+
Sbjct: 20 KNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVL 55
>3rd7_A Acyl-COA thioesterase; seattle structur genomics center for
infectious disease, ssgcid, hydrolase; 1.95A
{Mycobacterium avium}
Length = 286
Score = 27.7 bits (61), Expect = 5.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 5 TTSSQTGRGM--GEVFR------GMVAQEGVLRPLR 32
+ S RG+ G ++ + QEG R
Sbjct: 250 SPSIVGRRGLATGTLYNRSGELVCIATQEGYFAEQR 285
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 27.5 bits (61), Expect = 6.8
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 220 SIHFITYEVIYYTIRTVYRTEGLVAFY--RSYTTQLAMNVPFQSIHFITYEVMQTITNPS 277
S+HF+ Y + +G M+ F + EV +
Sbjct: 2 SLHFLYYCSEPTLDVKIAFCQGFDKQVDVSYIAKHYNMSKSKVDNQFYSVEVGDSTFTVL 61
Query: 278 RSYNPIAHMMSGAISGGVAAAI 299
+ Y + + SGA G V AA
Sbjct: 62 KRYQNLKPIGSGA-QGIVCAAY 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.395
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,738,301
Number of extensions: 275070
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 38
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)