RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11211
(316 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 58.2 bits (139), Expect = 2e-10
Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 27/255 (10%)
Query: 1 MQSLTTSSQTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFT 60
++ + +G+ + + ++G L RG A ++ P AL F+ + K F
Sbjct: 39 ASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 98
Query: 61 -----NRTLINNNVGYGLAGGMATMLHDGIMTPADVVKQRLQ------MYNSPYRSMLET 109
++ G +GG A + P D + RL + +
Sbjct: 99 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC 158
Query: 110 IRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTT 169
I +++++GL Y+ + + + +++ +F Y+ + +V++ + T
Sbjct: 159 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV 218
Query: 170 QLAMNVPFQSIHFI---------------TYEVIYYTIRTVYRTEGLVAFYRSYTTQLAM 214
+ + Y R + + EG AF++ + +
Sbjct: 219 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 278
Query: 215 NVPFQSIHFITYEVI 229
+ + + Y+ I
Sbjct: 279 GMG-GAFVLVLYDEI 292
Score = 51.3 bits (121), Expect = 4e-08
Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 28/252 (11%)
Query: 73 LAGGMATMLHDGIMTPADVVKQRLQMYNSP--------YRSMLETIRTVYRTEGLVAFYR 124
LAGG+A + + P + VK LQ+ ++ Y+ +++ + + + +G ++F+R
Sbjct: 11 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 70
Query: 125 SYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFIT 184
+ P Q+++F + Y + S
Sbjct: 71 GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS-LCFV 129
Query: 185 YEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVA 244
Y + + R + + + I +++++GL
Sbjct: 130 YPLDFARTRLAADV-------------------GKGAAQREFTGLGNCITKIFKSDGLRG 170
Query: 245 FYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNPIAHMMSGAISGGVAAAITTPLD 304
Y+ + + + +++ +F Y+ + + ++ + I M VA ++ P D
Sbjct: 171 LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFD 230
Query: 305 VCKTFLNTQQSK 316
+ + Q +
Sbjct: 231 TVRRRMMMQSGR 242
Score = 35.8 bits (81), Expect = 0.005
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 283 IAHMMSGAISGGVAAAITTPLDVCKTFLNTQQS 315
+ ++G ++ ++ P++ K L Q +
Sbjct: 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHA 39
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 28.8 bits (64), Expect = 0.44
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 8/133 (6%)
Query: 62 RTLINNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTV-YRTEGLV 120
L N V + + G ++ L + D+ +Q + +
Sbjct: 15 DRLKNEKVNWVVTGSLSFALQGVPVEVHDID---IQTDEEGAYEIERIFSEFVSKKVRFS 71
Query: 121 AFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSI 180
+ + + + + + + T L + R T M +P S+
Sbjct: 72 STEKICSHFGELIIDGIKVEIMGDIRKRLEDGTWEDPVDLNKYKRFVETH-GMKIPVLSL 130
Query: 181 HFITYEVIYYTIR 193
YE Y
Sbjct: 131 E---YEYQAYLKL 140
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 5/117 (4%)
Query: 5 TTSSQTGRGMGEVFRGMVAQEGVLRPLRGVNAVILGAAPAHALYFSCYEYLKDTFTNRTL 64
+G F +V G+ A + + + + +TL
Sbjct: 180 DEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTL 239
Query: 65 INNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEGLVA 121
+ + Y P +E IRT EG++
Sbjct: 240 -----RIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLT 291
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 27.3 bits (59), Expect = 2.5
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 76 GMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEG 118
G+ T + + R+ E + + T+G
Sbjct: 345 GIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDG 387
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 27.3 bits (59), Expect = 2.9
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 76 GMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEG 118
G+ + + T + R+ T+ R +G
Sbjct: 333 GVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADG 375
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 27.0 bits (58), Expect = 3.2
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 76 GMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRTVYRTEG 118
G+ I T + + + RT+G
Sbjct: 344 GVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDG 386
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia
haemolytica [TaxId: 75985]}
Length = 318
Score = 26.5 bits (57), Expect = 5.0
Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 8/233 (3%)
Query: 53 EYLKDTFTNRTLINNNVGYGLAGGMATMLHDGIMTPADVVKQRLQMYNSPYRSMLETIRT 112
E + F T I N+ + G + + +G ++PADV+ + R M
Sbjct: 16 EPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVL-----LTVDISRVMEIVNAD 70
Query: 113 VYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLA 172
+ + ++ Q + VIY + V + + +
Sbjct: 71 LAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYK 130
Query: 173 MNVPFQSIHFITYEVIYYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYE---VI 229
V +S ++ + Y E AF LA + +
Sbjct: 131 GKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGIC 190
Query: 230 YYTIRTVYRTEGLVAFYRSYTTQLAMNVPFQSIHFITYEVMQTITNPSRSYNP 282
Y+I Y ++ + + A + F S T++ + + S N
Sbjct: 191 DYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNK 243
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.395
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,119,107
Number of extensions: 49704
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 14
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)