BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11212
         (448 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae
          Length = 196

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 87/171 (50%), Gaps = 22/171 (12%)

Query: 273 ATHELSVEQQLYYKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGV---- 328
            +H L  E QLY+ +I  + + SD   +  A++ L  + GL +++P     I+E +    
Sbjct: 1   GSHMLPKELQLYFDKIL-SMIKSD--MKDIAIECLEKESGLQQLVPYFIQHISELILKSF 57

Query: 329 -KVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNH 387
            +  V++  +AL         +L+ N+ ++++ YLH++LPS+L+C++     G+   D+ 
Sbjct: 58  KEAEVLKTCIALYF-------SLIKNKHVFIDPYLHQILPSLLTCVI-----GKSIVDDD 105

Query: 388 WALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAI 438
             +R  ++ ++  +   ++ S   +  RV + L     DP  +  S YGA+
Sbjct: 106 --VRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGAL 154


>pdb|1TAF|B Chain B, Drosophila Tbp Associated Factors Dtafii42DTAFII62
          HETEROTETRAMER
          Length = 70

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 3  IYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ 46
          +YG+S S ESMKVIAESIG+ +L DDAAKEL+++++   K I+Q
Sbjct: 2  LYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQ 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,321,327
Number of Sequences: 62578
Number of extensions: 552798
Number of successful extensions: 1544
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 5
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)