BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11212
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila
melanogaster GN=Taf6 PE=1 SV=2
Length = 606
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 213/312 (68%), Positives = 260/312 (83%), Gaps = 1/312 (0%)
Query: 130 KCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFE 189
K M+H+KR KL DID +L ++N+EP YG F+PF+ ASGGGRELHFT++KE+D
Sbjct: 63 KFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLG 122
Query: 190 DLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKLGKK-DKD 248
++ + + K L+ LR+HW +EGVQPTVPENPPP+ K +Q L+S++P+ K+ + +KD
Sbjct: 123 EITSTNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKD 182
Query: 249 TSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVGSDEGRRFEALQSLA 308
+GKPT+ K+ KL+NVET+HVKQLATHELSVEQQLYYKEITEACVGSDE RR EALQSL
Sbjct: 183 AAGKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEACVGSDEPRRGEALQSLG 242
Query: 309 TDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPS 368
+DPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMV+ALLDN SL+LEKYLHEL+PS
Sbjct: 243 SDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPS 302
Query: 369 ILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPK 428
+++CIVSKQLC RPE DNHWALRDFASRL+ Q+ KNFNT TNN+QTRVTR+ S A+ + K
Sbjct: 303 VMTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDK 362
Query: 429 INFPSLYGAIAG 440
+ SLYG+IAG
Sbjct: 363 THLSSLYGSIAG 374
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 96/155 (61%), Gaps = 29/155 (18%)
Query: 3 IYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ---------------- 46
+YG+S S ESMKVIAESIG+ +L DDAAKEL+++++ K I+Q
Sbjct: 16 LYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSV 75
Query: 47 -------------PIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSALE 93
P YG F+PF+ ASGGGRELHFT++KE+D ++ + + K L+
Sbjct: 76 RDIDMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLD 135
Query: 94 THLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIS 128
LR+HW +EGVQPTVPENPPP+ K +Q L+S++
Sbjct: 136 LTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVN 170
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis
GN=taf6 PE=2 SV=3
Length = 618
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/322 (57%), Positives = 235/322 (72%), Gaps = 10/322 (3%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
+ K M KR KL P DID AL +KN+EPIYG +FLPF++ASGGGRELHF +EKE D
Sbjct: 52 ALKFMHVGKRQKLTPSDIDAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETD 111
Query: 188 FEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKL----- 242
D+++ P+ L+ L+ HWL+IEGVQP +PENPPPV K QK E+ +P+
Sbjct: 112 LSDIISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQE 171
Query: 243 ----GKKDKDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVGSDEG 298
GK GK K L + +K + HELSVEQQLYYKEITEACVGS E
Sbjct: 172 EGLPGKGQGSGEGKGKEKKTAILEGAP-LKLKPRSIHELSVEQQLYYKEITEACVGSCEA 230
Query: 299 RRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYL 358
+R EALQS+ATDPGL++MLPR TFI+EGV+VNVVQNNLALLIYLMRMVKAL+DN +LYL
Sbjct: 231 KRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYL 290
Query: 359 EKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTR 418
EKYLHEL+P++++CIVS+QLC RP+ DNHWALRDFA+RL+ Q+ KNF+T+TNNIQ+R+T+
Sbjct: 291 EKYLHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLIAQICKNFSTTTNNIQSRITK 350
Query: 419 LLSNAINDPKINFPSLYGAIAG 440
+ D + + + YG+IAG
Sbjct: 351 TFTKTWVDDRTPWTTRYGSIAG 372
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 29/153 (18%)
Query: 3 IYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ---------------- 46
I T ESMKVI+ES+GI + ++ + L+ +++ K + Q
Sbjct: 7 IGNTLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTP 66
Query: 47 -------------PIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSALE 93
PIYG +FLPF++ASGGGRELHF +EKE D D+++ P+ L+
Sbjct: 67 SDIDAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLD 126
Query: 94 THLRTHWLAIEGVQPTVPENPPPVDKSAQKLES 126
L+ HWL+IEGVQP +PENPPPV K QK E+
Sbjct: 127 VSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEA 159
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/326 (54%), Positives = 232/326 (71%), Gaps = 13/326 (3%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
+ K M KR KL DID AL +KN+EP+YG +F+PF+ ASGGGREL+F +EKEVD
Sbjct: 54 ALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVD 113
Query: 188 FEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKL----- 242
D++ P+ L+ L+ HWL+IEG QP +PENPPP K QK E+ +P+
Sbjct: 114 LSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQE 173
Query: 243 --------GKKDKDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVG 294
G+ GK K L + +K + HELSVEQQLYYKEITEACVG
Sbjct: 174 EDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG 233
Query: 295 SDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354
S E +R EALQS+ATDPGL++MLPR TFI+EGV+VNVVQNNLALLIYLMRMVKAL+DN
Sbjct: 234 SCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNP 293
Query: 355 SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQT 414
+LYLEKY+HEL+P++++CIVS+QLC RP+ DNHWALRDFA+RL+ Q+ K+F+T+TNNIQ+
Sbjct: 294 TLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQS 353
Query: 415 RVTRLLSNAINDPKINFPSLYGAIAG 440
R+T+ + + D K + + YG+IAG
Sbjct: 354 RITKTFTKSWVDEKTPWTTRYGSIAG 379
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 29/155 (18%)
Query: 1 MDIYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVI---------------- 44
+ + T ESMKV+AES+GI + ++ + L+D ++Y K I
Sbjct: 7 LKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKL 66
Query: 45 -------------IQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSA 91
++P+YG +F+PF+ ASGGGREL+F +EKEVD D++ P+
Sbjct: 67 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVP 126
Query: 92 LETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLES 126
L+ L+ HWL+IEG QP +PENPPP K QK E+
Sbjct: 127 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEA 161
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/326 (54%), Positives = 231/326 (70%), Gaps = 13/326 (3%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
+ K M KR KL DID AL +KN+EP+YG +F+PF+ ASGGGREL+F +EKEVD
Sbjct: 54 ALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVD 113
Query: 188 FEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKL----- 242
D++ P+ L+ L+ HWL+IEG QP +PENPPP K QK E+ +P+
Sbjct: 114 LSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQE 173
Query: 243 --------GKKDKDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVG 294
G+ GK K L +K + HELSVEQQLYYKEITEACVG
Sbjct: 174 EDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG 233
Query: 295 SDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354
S E +R EALQS+ATDPGL++MLPR TFI+EGV+VNVVQNNLALLIYLMRMVKAL+DN
Sbjct: 234 SCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNP 293
Query: 355 SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQT 414
+LYLEKY+HEL+P++++CIVS+QLC RP+ DNHWALRDFA+RL+ Q+ K+F+T+TNNIQ+
Sbjct: 294 TLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQS 353
Query: 415 RVTRLLSNAINDPKINFPSLYGAIAG 440
R+T+ + + D K + + YG+IAG
Sbjct: 354 RITKTFTKSWVDEKTPWTTRYGSIAG 379
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 29/155 (18%)
Query: 1 MDIYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVI---------------- 44
+ + T ESMKV+AES+GI + ++ + L+D ++Y K I
Sbjct: 7 LKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKL 66
Query: 45 -------------IQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSA 91
++P+YG +F+PF+ ASGGGREL+F +EKEVD D++ P+
Sbjct: 67 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVP 126
Query: 92 LETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLES 126
L+ L+ HWL+IEG QP +PENPPP K QK E+
Sbjct: 127 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEA 161
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/326 (54%), Positives = 231/326 (70%), Gaps = 13/326 (3%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
+ K M KR KL DID AL +KN+EP+YG +F+PF+ ASGGGREL+F +EKEVD
Sbjct: 54 ALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVD 113
Query: 188 FEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKL----- 242
D++ P+ L+ L+ HWL+IEG QP +PENPPP K QK E+ +P+
Sbjct: 114 LSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQE 173
Query: 243 --------GKKDKDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVG 294
G+ GK K L +K + HELSVEQQLYYKEITEACVG
Sbjct: 174 EDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG 233
Query: 295 SDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354
S E +R EALQS+ATDPGL++MLPR TFI+EGV+VNVVQNNLALLIYLMRMVKAL+DN
Sbjct: 234 SCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNP 293
Query: 355 SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQT 414
+LYLEKY+HEL+P++++CIVS+QLC RP+ DNHWALRDFA+RL+ Q+ K+F+T+TNNIQ+
Sbjct: 294 TLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQS 353
Query: 415 RVTRLLSNAINDPKINFPSLYGAIAG 440
R+T+ + + D K + + YG+IAG
Sbjct: 354 RITKTFTKSWVDEKTPWTTRYGSIAG 379
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 29/155 (18%)
Query: 1 MDIYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVI---------------- 44
+ + T ESMKV+AES+GI + ++ + L+D ++Y K I
Sbjct: 7 LKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKL 66
Query: 45 -------------IQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSA 91
++P+YG +F+PF+ ASGGGREL+F +EKEVD D++ P+
Sbjct: 67 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVP 126
Query: 92 LETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLES 126
L+ L+ HWL+IEG QP +PENPPP K QK E+
Sbjct: 127 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEA 161
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf6 PE=1 SV=1
Length = 452
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 175/320 (54%), Gaps = 22/320 (6%)
Query: 130 KCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHAS--GGGRELHFTDEKEVD 187
K M HSKR L DI AL N+EP+YG S+ L F A+ G L++ D++EVD
Sbjct: 48 KFMVHSKRTVLTSADISSALRTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVD 107
Query: 188 FEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKLGKKDK 247
FE ++ PK HWLAIEGVQP +P+NP P D + + S K
Sbjct: 108 FEKIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWAS-----------K 156
Query: 248 DTSG----KPTSAKLEK--LRNVETVHVKQLATHELSVEQQLYYKEITEACVG-SDEGRR 300
TSG T+AK + + +++ V +K L H LS E QLY++ IT A + ++ R
Sbjct: 157 GTSGVMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSALLDETNVELR 216
Query: 301 FEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEK 360
AL SL DPGLH++LP F+++ V N+ NL +L LM M ALLDN +L++E
Sbjct: 217 DAALSSLRDDPGLHQLLPYFIMFLSDSVTRNL--GNLVVLTTLMHMAWALLDNPNLFVEP 274
Query: 361 YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLL 420
Y+ +L+PSIL+C+V+K+L P H+ALRD A+ LL V F ++ RVTR
Sbjct: 275 YVQQLMPSILTCLVAKRLGSDPNNHEHYALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTA 334
Query: 421 SNAINDPKINFPSLYGAIAG 440
A D + + YGAI G
Sbjct: 335 LKAFLDNTKPYSTHYGAIKG 354
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 6 TSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ------------------- 46
T ++IES+K +AE +GI NL D+ A ++ ++ Y ++Q
Sbjct: 4 TVWNIESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADI 63
Query: 47 ----------PIYGLTVSQFLPFKHAS--GGGRELHFTDEKEVDFEDLLTNLNPKSALET 94
P+YG S+ L F A+ G L++ D++EVDFE ++ PK
Sbjct: 64 SSALRTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNI 123
Query: 95 HLRTHWLAIEGVQPTVPENPPPVDKSAQKLES 126
HWLAIEGVQP +P+NP P D + + S
Sbjct: 124 SYSAHWLAIEGVQPAIPQNPTPSDHTVGEWAS 155
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1
SV=1
Length = 516
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 181/353 (51%), Gaps = 44/353 (12%)
Query: 125 ESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGL----TVSQFLPF-KHASGGGRELH 179
+++ FK HSKR L D+ AL + N+EP+YG V++ + F K + GG+ ++
Sbjct: 51 QAVKFK--RHSKRDVLTTDDVSKALRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVY 108
Query: 180 FTDEKEVDFEDLLTNLNPKSALETHLRTHWLAIEGVQPTVPENP---------PPVDKSA 230
+ DE+EVDF+ L+ P+ THWLA+EGVQP + +NP PP + A
Sbjct: 109 YLDEEEVDFDRLINEPLPQVPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGA 168
Query: 231 -------QKLESIDPISKLGKKDKDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQL 283
L++ + DT S L ++ + VK L H LS E Q+
Sbjct: 169 IVTALNDNSLQTPVTSTTASASVTDTGA---SQHLSNVKPGQNTEVKPLVKHVLSKELQI 225
Query: 284 YYKEITEACVG---SDEGRRF---EALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNL 337
Y+ ++ +DE + AL SL TD GLH+++P FIAE + N+ ++L
Sbjct: 226 YFNKVISTLTAKSQADEAAQHMKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNL--SDL 283
Query: 338 ALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHW--------- 388
LL ++ M+ +LL N S++L+ Y+H L+PSIL+ +++K+L G P+ D+
Sbjct: 284 QLLTTILEMIYSLLSNTSIFLDPYIHSLMPSILTLLLAKKLGGSPKDDSPQEIHEFLERT 343
Query: 389 -ALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAG 440
ALRDFA+ LL V K F + +++ RVTR L D F + YG + G
Sbjct: 344 NALRDFAASLLDYVLKKFPQAYKSLKPRVTRTLLKTFLDINRVFGTYYGCLKG 396
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 34/138 (24%)
Query: 11 ESMKVIAESIGIPNLPDDAAKEL----------------------------SDNITYCCK 42
+++K +AES+G+ N+ DD K L +D+++ +
Sbjct: 15 DTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKALR 74
Query: 43 VI-IQPIYGL----TVSQFLPF-KHASGGGRELHFTDEKEVDFEDLLTNLNPKSALETHL 96
V+ ++P+YG V++ + F K + GG+ +++ DE+EVDF+ L+ P+
Sbjct: 75 VLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVDFDRLINEPLPQVPRLPTF 134
Query: 97 RTHWLAIEGVQPTVPENP 114
THWLA+EGVQP + +NP
Sbjct: 135 TTHWLAVEGVQPAIIQNP 152
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2
SV=1
Length = 616
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 52/314 (16%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
S + M H+KR KL D + AL ++E + G + LP + A G +L+F +++EV
Sbjct: 51 SSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPLRPAREG--DLYFPEDREVS 108
Query: 188 FEDLLTNLN-PKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKLGKKD 246
+L N PK ET +R H ++G P+ P
Sbjct: 109 LVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPS-------------------- 148
Query: 247 KDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVGSDEGRRFEALQS 306
A L+ + YY+++T A +G D ALQ
Sbjct: 149 --------------------------AVSSLTDDLLKYYQQVTRAVLGDDPQLMKVALQD 182
Query: 307 LATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELL 366
L T+ + +LP ++ GVK V ++L L L+++ ++L+ N L L Y+ L+
Sbjct: 183 LQTNSKIAALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLIRNPHLCLGPYVRSLV 239
Query: 367 PSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAIND 426
S+L C++ ++HW LRD A+ LL+ + + + ++ L + D
Sbjct: 240 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQQILLSLQKVLTD 299
Query: 427 PKINFPSLYGAIAG 440
P S YGA+ G
Sbjct: 300 PVRPLCSHYGAVVG 313
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 11 ESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ------------------------ 46
ES++++AES G+ L D+ A L++++ Y + Q
Sbjct: 15 ESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALR 73
Query: 47 -----PIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLN-PKSALETHLRTHW 100
+ G + LP + A G +L+F +++EV +L N PK ET +R H
Sbjct: 74 WSSVEAVCGYGSQEALPLRPAREG--DLYFPEDREVSLVELALATNIPKGCAETAVRVHV 131
Query: 101 LAIEGVQPTVPENPPP 116
++G P+ P
Sbjct: 132 SYLDGKGNLAPQGSVP 147
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1
SV=1
Length = 622
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 52/314 (16%)
Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFKHASGGGRELHFTDEKEVD 187
S + M H+KR KL D + AL ++E + G + LP + A G EL+F +++EV+
Sbjct: 51 SSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVN 108
Query: 188 FEDLLTNLN-PKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESIDPISKLGKKD 246
+L N PK ET +R H ++G P+ P
Sbjct: 109 LVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPS-------------------- 148
Query: 247 KDTSGKPTSAKLEKLRNVETVHVKQLATHELSVEQQLYYKEITEACVGSDEGRRFEALQS 306
A L+ + YY ++T A +G D ALQ
Sbjct: 149 --------------------------AVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD 182
Query: 307 LATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELL 366
L T+ + +LP ++ GVK V ++L L L+++ ++L N L L Y+ L+
Sbjct: 183 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV 239
Query: 367 PSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAIND 426
S+L C++ ++HW LRD A+ LL+ + + + + L + D
Sbjct: 240 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD 299
Query: 427 PKINFPSLYGAIAG 440
P YGA+ G
Sbjct: 300 PVRPLCCHYGAVVG 313
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 33/136 (24%)
Query: 11 ESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ------------------------ 46
ES++++AES G+ L D+ A L++++ Y + Q
Sbjct: 15 ESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALR 73
Query: 47 -----PIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLN-PKSALETHLRTHW 100
+ G + LP + A G EL+F +++EV+ +L N PK ET +R H
Sbjct: 74 WSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPKGCAETAVRVHV 131
Query: 101 LAIEGVQPTVPENPPP 116
++G P+ P
Sbjct: 132 SYLDGKGNLAPQGSVP 147
>sp|Q27YE5|L_MOBVC RNA-directed RNA polymerase L OS=Mobala virus (isolate Rat/Central
African Republic/Acar 3080/1983) GN=L PE=3 SV=1
Length = 2220
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 37/187 (19%)
Query: 210 LAIEGVQPTVPENPPPVDKSAQKLESIDP--------ISKLGKKDKDTSGKPTSAKLE-- 259
L + GV+PT+ P+D+ + ++++DP +S + ++ ++ KL
Sbjct: 457 LEVNGVEPTINYEKNPIDRFSYNIQAMDPDNQSDLKRLSSISLALVNSMKTSSTVKLRQN 516
Query: 260 ---KLRNVETVHVKQLATHELSVEQQ---LYYKE---------ITEACVG------SDEG 298
KLR + V K+ + +E L Y++ + +A VG +D
Sbjct: 517 EHGKLR-YKCVRCKEAYYQDFLIEGHRLMLIYQKTGECSKCYSVNDAVVGELCSFYADPK 575
Query: 299 RRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYL 358
R F A+ S D L EM+ M +++ E ++ + L+ ++ MV +L N + +
Sbjct: 576 RYFPAIFS---DSVLQEMIDTMISWLTECSELKEFIKEIKSLLKMVVMV--VLTNPTKRI 630
Query: 359 EKYLHEL 365
+K+L L
Sbjct: 631 QKFLQNL 637
>sp|Q80YA3|DDHD1_MOUSE Phospholipase DDHD1 OS=Mus musculus GN=Ddhd1 PE=2 SV=1
Length = 547
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 52 TVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSALETHLRTHWLAIEGVQPTVP 111
TV+Q L F AS G LH +E ED P H + + Q +
Sbjct: 18 TVTQKLGFSKASSSGTRLHRGYVEEATLED-----KPSQTSHIVFVVHGIGQKMDQGRII 72
Query: 112 ENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151
+N + ++A+K+E F +H+ V+ LPV+ L +
Sbjct: 73 KNTAMMREAARKMEEKHFS--NHATHVEFLPVEWRSKLTL 110
>sp|Q9V0Q0|TRM5B_PYRAB tRNA (guanine(37)-N1)-methyltransferase Trm5b OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=trm5b PE=1 SV=1
Length = 330
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 318 PRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCI---- 373
P ++ E +K+N V NN+ ++ R ++ D + L KY HE L +SCI
Sbjct: 214 PWAIKYLEENIKLNKV-NNVVPILGDSREIEVKADRIIMNLPKYAHEFLEHAISCINDGG 272
Query: 374 VSKQLCGRPEADNH-WALRDFASRLLTQVSKNFNTSTNNIQTRVTR 418
V PE D + W L + +++ F + RV R
Sbjct: 273 VIHYYGFGPEGDPYGWHLER-----IRELANKFGVKVEVLGKRVIR 313
>sp|O46606|DDHD1_BOVIN Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1
Length = 875
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 52 TVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSALETHLRTHWLAIEGVQPTVP 111
TV+Q L F AS G LH +E ED P H + + Q +
Sbjct: 374 TVTQKLGFSKASSSGTRLHRGYVEEATLED-----KPSQTTHIVFVVHGIGQKMDQGRII 428
Query: 112 ENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFK 169
+N + ++A+K+E F +H+ V+ LPV+ L + G TV P K
Sbjct: 429 KNTAMMREAARKIEERHFS--NHATHVEFLPVEWRSKLTLD------GDTVDSITPDK 478
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2
Length = 900
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 52 TVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNLNPKSALETHLRTHWLAIEGVQPTVP 111
TV+Q L F AS G LH +E ED P H + + Q +
Sbjct: 371 TVTQKLGFSKASSSGTRLHRGYVEEATLED-----KPSQTTHIVFVVHGIGQKMDQGRII 425
Query: 112 ENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTVSQFLPFK 169
+N + ++A+K+E F +H+ V+ LPV+ L + G TV P K
Sbjct: 426 KNTAMMREAARKIEERHFS--NHATHVEFLPVEWRSKLTLD------GDTVDSITPDK 475
>sp|Q4AE62|GTDC1_HUMAN Glycosyltransferase-like domain-containing protein 1 OS=Homo
sapiens GN=GTDC1 PE=2 SV=1
Length = 458
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 3 IYGTSFSIESMKVIAESIG--IPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFK 60
++ + F++ES S+G + +PD K+L I C+VI PI VS+F+P K
Sbjct: 123 VFNSVFNMESF---LTSMGKFMKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMP-K 178
Query: 61 H------------ASGGG---RELHFTDEKEVDFEDLLTNLNPKSALETH 95
H +GG L F E+ D EDLL N N S +TH
Sbjct: 179 HKTTHLKKMLGLKGNGGAVLSMALPFQPEQR-DSEDLLKNFN--SECDTH 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,005,768
Number of Sequences: 539616
Number of extensions: 7165328
Number of successful extensions: 19709
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 19649
Number of HSP's gapped (non-prelim): 63
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)