Query psy11212
Match_columns 448
No_of_seqs 169 out of 323
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:59:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 1.1E-54 3.7E-59 408.4 15.5 162 274-447 2-163 (196)
2 1taf_B TFIID TBP associated fa 99.6 6.2E-16 2.1E-20 122.2 6.8 69 3-151 2-70 (70)
3 2hue_C Histone H4; mini beta s 99.2 1.6E-11 5.6E-16 100.4 4.0 75 7-162 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.1 5.5E-11 1.9E-15 100.7 5.7 75 7-162 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.0 3.2E-10 1.1E-14 96.1 4.9 74 7-161 29-102 (103)
6 1tzy_D Histone H4-VI; histone- 99.0 4E-10 1.4E-14 95.5 5.3 75 7-162 29-103 (103)
7 1taf_B TFIID TBP associated fa 98.3 7.9E-08 2.7E-12 75.8 0.8 42 2-43 17-70 (70)
8 2hue_C Histone H4; mini beta s 98.1 4.7E-07 1.6E-11 73.8 0.4 50 4-53 23-84 (84)
9 1id3_B Histone H4; nucleosome 98.0 1E-06 3.5E-11 74.4 1.3 48 6-53 44-102 (102)
10 1tzy_D Histone H4-VI; histone- 97.7 8.4E-06 2.9E-10 68.8 0.9 47 7-53 46-103 (103)
11 2ly8_A Budding yeast chaperone 97.6 3.4E-05 1.2E-09 66.8 4.3 40 121-161 81-120 (121)
12 2yfw_B Histone H4, H4; cell cy 97.6 1E-05 3.4E-10 68.4 0.7 47 7-53 46-103 (103)
13 2l5a_A Histone H3-like centrom 97.1 0.00011 3.9E-09 70.0 1.4 36 125-161 199-234 (235)
14 1ku5_A HPHA, archaeal histon; 97.0 0.0012 4E-08 51.6 5.6 68 4-151 3-70 (70)
15 2qk2_A LP04448P; mini spindles 96.7 0.014 4.9E-07 54.2 12.2 112 278-407 93-209 (242)
16 1ibr_B P95, importin beta-1 su 96.4 0.043 1.5E-06 54.5 13.8 82 357-446 314-395 (462)
17 4fdd_A Transportin-1; heat rep 96.3 0.023 7.8E-07 62.5 12.6 155 283-446 215-388 (852)
18 2bpt_A Importin beta-1 subunit 95.5 0.1 3.5E-06 56.4 13.1 151 284-446 225-398 (861)
19 1qgr_A Protein (importin beta 94.7 0.17 5.8E-06 54.8 11.8 81 358-446 315-395 (876)
20 1b67_A Protein (histone HMFA); 94.6 0.053 1.8E-06 41.6 5.4 28 125-152 40-67 (68)
21 1ibr_B P95, importin beta-1 su 94.4 0.14 4.7E-06 50.8 9.5 95 299-408 344-442 (462)
22 3b0c_T CENP-T, centromere prot 94.3 0.043 1.5E-06 46.6 4.7 29 125-153 45-73 (111)
23 4fdd_A Transportin-1; heat rep 93.2 0.25 8.5E-06 54.2 9.6 125 303-444 344-469 (852)
24 1u6g_C TIP120 protein, CAND1; 93.0 0.57 2E-05 53.5 12.4 75 356-442 559-633 (1230)
25 2bpt_A Importin beta-1 subunit 92.6 0.33 1.1E-05 52.3 9.4 127 298-442 346-478 (861)
26 1f1e_A Histone fold protein; a 92.3 0.063 2.2E-06 48.2 2.7 38 120-157 38-75 (154)
27 1qgr_A Protein (importin beta 92.2 0.57 2E-05 50.6 10.6 79 340-427 625-703 (876)
28 1u6g_C TIP120 protein, CAND1; 91.9 1.2 4.2E-05 50.8 13.3 152 281-444 428-596 (1230)
29 2qk2_A LP04448P; mini spindles 91.8 3 0.0001 38.2 13.7 129 283-428 56-189 (242)
30 1b3u_A Protein (protein phosph 91.8 0.33 1.1E-05 49.6 7.7 133 287-443 328-467 (588)
31 1b3u_A Protein (protein phosph 91.7 0.36 1.2E-05 49.4 7.8 138 283-444 164-308 (588)
32 2ly8_A Budding yeast chaperone 91.6 0.058 2E-06 46.6 1.5 47 6-52 63-120 (121)
33 4db8_A Armadillo-repeat protei 91.1 0.11 3.8E-06 47.5 3.1 142 285-446 14-167 (252)
34 1taf_A TFIID TBP associated fa 91.0 0.12 4E-06 40.3 2.5 33 120-152 34-66 (68)
35 1f1e_A Histone fold protein; a 90.8 0.39 1.3E-05 43.1 6.1 29 124-152 119-147 (154)
36 2qk1_A Protein STU2; STU2P, XM 90.8 2.2 7.4E-05 40.2 11.9 136 291-442 24-171 (249)
37 1n1j_A NF-YB; histone-like PAI 90.5 0.13 4.4E-06 42.0 2.5 35 120-154 43-77 (93)
38 2qk1_A Protein STU2; STU2P, XM 89.6 1.7 5.9E-05 40.9 10.1 107 284-408 105-225 (249)
39 3b0c_W CENP-W, centromere prot 89.5 0.14 4.7E-06 40.4 1.8 33 120-152 38-70 (76)
40 2vgl_B AP-2 complex subunit be 89.1 1.6 5.4E-05 46.1 10.3 141 282-447 48-190 (591)
41 4hxt_A De novo protein OR329; 88.2 0.5 1.7E-05 42.6 5.0 140 287-446 6-157 (252)
42 3nqj_A Histone H3-like centrom 88.2 0.22 7.7E-06 40.1 2.2 35 122-156 45-79 (82)
43 2hue_B Histone H3; mini beta s 87.6 0.23 8E-06 39.5 2.0 32 123-154 44-75 (77)
44 1oyz_A Hypothetical protein YI 87.4 6.2 0.00021 36.5 12.2 54 386-445 103-156 (280)
45 4db6_A Armadillo repeat protei 87.0 0.45 1.5E-05 42.2 3.8 142 284-445 13-166 (210)
46 2jdq_A Importin alpha-1 subuni 84.9 1.6 5.5E-05 43.0 7.0 143 285-445 22-178 (450)
47 3ltj_A Alpharep-4; protein eng 84.6 3.6 0.00012 36.1 8.6 50 385-446 118-167 (201)
48 1oyz_A Hypothetical protein YI 84.4 8 0.00027 35.7 11.3 52 385-446 170-221 (280)
49 3ltm_A Alpha-REP4; protein eng 83.7 4.5 0.00015 35.8 8.9 50 385-446 123-172 (211)
50 3v9r_A MHF1, uncharacterized p 83.6 0.34 1.2E-05 39.7 1.1 31 121-151 49-79 (90)
51 3b0b_B CENP-S, centromere prot 83.1 0.32 1.1E-05 41.0 0.9 32 120-151 55-86 (107)
52 4ffb_C Protein STU2; tubulin f 83.0 8.8 0.0003 36.0 11.1 130 282-425 101-242 (278)
53 2jdq_A Importin alpha-1 subuni 82.6 3.9 0.00013 40.2 8.7 141 285-445 109-262 (450)
54 2byk_B Chrac-14; nucleosome sl 82.2 0.76 2.6E-05 39.9 2.9 36 120-155 44-79 (128)
55 4db8_A Armadillo-repeat protei 82.0 1.8 6E-05 39.3 5.5 140 286-445 57-208 (252)
56 2vgl_A Adaptor protein complex 80.9 7.7 0.00026 41.4 10.9 139 285-444 76-214 (621)
57 3nqu_A Histone H3-like centrom 80.9 0.58 2E-05 41.3 1.6 35 122-156 103-137 (140)
58 1tzy_C Histone H3; histone-fol 80.3 2 7E-05 37.6 5.0 28 127-154 107-134 (136)
59 3ltm_A Alpha-REP4; protein eng 79.7 9.7 0.00033 33.5 9.6 122 285-447 83-204 (211)
60 3ltj_A Alpharep-4; protein eng 79.0 8.9 0.00031 33.5 9.0 49 386-446 150-198 (201)
61 1n1j_B NF-YC; histone-like PAI 78.5 0.76 2.6E-05 37.8 1.6 34 119-152 52-85 (97)
62 4dra_A Centromere protein S; D 78.1 0.67 2.3E-05 39.5 1.1 31 121-151 64-94 (113)
63 1jfi_B DR1 protein, transcript 77.8 0.98 3.4E-05 41.4 2.2 36 120-155 49-84 (179)
64 2yfv_A Histone H3-like centrom 76.6 0.92 3.2E-05 37.8 1.6 30 123-152 71-100 (100)
65 1wa5_B Importin alpha subunit; 76.2 5.4 0.00018 40.8 7.6 139 287-445 177-327 (530)
66 4b8j_A Importin subunit alpha- 76.0 14 0.00049 37.5 10.7 102 285-403 76-189 (528)
67 4db6_A Armadillo repeat protei 75.7 5.9 0.0002 34.7 6.8 141 285-445 56-208 (210)
68 3vh5_A CENP-S; histone fold, c 75.1 1.1 3.7E-05 39.5 1.7 31 121-151 56-86 (140)
69 4hxt_A De novo protein OR329; 75.1 4.9 0.00017 35.8 6.2 141 285-445 46-198 (252)
70 1wa5_B Importin alpha subunit; 74.3 4.5 0.00015 41.5 6.4 140 286-445 218-369 (530)
71 1w63_A Adapter-related protein 73.8 6.7 0.00023 41.7 7.8 70 361-446 139-208 (618)
72 1w63_A Adapter-related protein 70.9 13 0.00043 39.5 9.1 138 282-445 349-489 (618)
73 1te4_A Conserved protein MTH18 69.9 3 0.0001 34.6 3.2 122 281-444 10-131 (131)
74 3r45_A Histone H3-like centrom 69.7 1.1 3.9E-05 40.0 0.6 34 122-155 119-152 (156)
75 2nqb_D Histone H2B; nucleosome 69.5 1.7 5.9E-05 37.4 1.6 31 122-152 69-99 (123)
76 1jfi_A Transcription regulator 68.3 1.1 3.7E-05 37.0 0.1 33 119-151 44-76 (98)
77 1xqr_A HSPBP1 protein; armadil 68.3 44 0.0015 32.2 11.7 110 315-443 124-235 (296)
78 2x19_B Importin-13; nuclear tr 67.4 13 0.00045 40.9 8.6 84 341-441 511-597 (963)
79 1tzy_B Histone H2B; histone-fo 66.7 2.1 7.3E-05 37.0 1.6 31 122-152 72-102 (126)
80 1wa5_C Importin alpha RE-expor 66.5 12 0.00042 41.5 8.2 106 336-444 305-432 (960)
81 4g92_C HAPE; transcription fac 66.4 2.2 7.4E-05 36.4 1.6 33 119-151 74-106 (119)
82 2x1g_F Cadmus; transport prote 66.1 7.1 0.00024 43.3 6.1 71 340-428 527-597 (971)
83 1vsy_5 Proteasome activator BL 66.1 2.7 9.1E-05 48.0 2.7 98 335-444 814-922 (997)
84 2f8n_G Core histone macro-H2A. 64.4 9.5 0.00033 32.5 5.3 43 5-47 20-63 (120)
85 1jdh_A Beta-catenin; beta-cate 64.1 22 0.00074 35.6 8.9 126 285-427 19-155 (529)
86 2z6h_A Catenin beta-1, beta-ca 63.9 16 0.00053 38.6 8.1 123 288-427 19-152 (644)
87 3ul1_B Importin subunit alpha- 63.7 23 0.00079 36.3 9.1 102 285-403 59-172 (510)
88 2z6g_A B-catenin; FULL-length, 62.1 18 0.00063 39.5 8.4 126 285-427 152-288 (780)
89 3m1i_C Exportin-1; heat repeat 62.1 62 0.0021 36.3 13.0 127 313-446 338-482 (1049)
90 4b8j_A Importin subunit alpha- 61.9 10 0.00035 38.5 6.1 140 287-445 164-314 (528)
91 2nqb_C Histone H2A; nucleosome 60.8 13 0.00044 31.9 5.5 43 5-47 21-64 (123)
92 4ffb_C Protein STU2; tubulin f 60.7 48 0.0017 30.8 10.1 91 334-428 66-196 (278)
93 3tpo_A Importin subunit alpha- 58.7 35 0.0012 35.0 9.4 102 285-403 78-191 (529)
94 2byk_A Chrac-16; nucleosome sl 54.3 6.2 0.00021 34.6 2.4 34 119-152 52-86 (140)
95 1id3_C Histone H2A.1; nucleoso 54.0 15 0.0005 31.9 4.7 43 5-47 23-66 (131)
96 1tzy_A Histone H2A-IV; histone 53.7 19 0.00066 31.0 5.4 43 5-47 23-66 (129)
97 2f8n_K Histone H2A type 1; nuc 52.9 18 0.00061 32.1 5.1 24 128-151 86-109 (149)
98 2of3_A ZYG-9; multifunctional 52.1 43 0.0015 32.2 8.2 128 289-438 52-188 (266)
99 2jss_A Chimera of histone H2B. 51.3 7.7 0.00026 35.6 2.7 31 122-152 39-69 (192)
100 2iw3_A Elongation factor 3A; a 50.3 1.1E+02 0.0038 34.8 12.3 141 285-444 16-161 (986)
101 1f66_C Histone H2A.Z; nucleoso 49.5 25 0.00084 30.3 5.4 24 128-151 70-93 (128)
102 4hat_C Exportin-1; heat repeat 46.2 42 0.0015 38.1 8.2 151 275-441 442-616 (1023)
103 3tjz_B Coatomer subunit gamma; 45.1 92 0.0032 31.0 9.7 138 279-445 64-204 (355)
104 1te4_A Conserved protein MTH18 43.8 9.2 0.00031 31.5 1.8 50 385-446 53-102 (131)
105 2x19_B Importin-13; nuclear tr 39.9 67 0.0023 35.1 8.4 100 315-426 441-540 (963)
106 1jdh_A Beta-catenin; beta-cate 39.8 2.4E+02 0.0084 27.7 12.0 109 316-445 186-294 (529)
107 1ku5_A HPHA, archaeal histon; 39.6 8.5 0.00029 29.3 0.8 39 4-42 20-69 (70)
108 2vgl_B AP-2 complex subunit be 39.2 1.7E+02 0.0058 30.4 11.1 96 292-405 95-191 (591)
109 1wa5_C Importin alpha RE-expor 38.7 64 0.0022 35.7 8.1 125 303-444 384-523 (960)
110 2z6g_A B-catenin; FULL-length, 38.3 1.7E+02 0.0057 31.8 11.2 93 339-445 335-427 (780)
111 2x1g_F Cadmus; transport prote 37.0 1.1E+02 0.0036 33.8 9.5 111 303-424 444-555 (971)
112 2jss_A Chimera of histone H2B. 36.7 46 0.0016 30.3 5.4 23 128-150 148-170 (192)
113 3l6x_A Catenin delta-1; cateni 35.2 1.1E+02 0.0037 32.6 8.8 148 288-443 95-267 (584)
114 3ibv_A Exportin-T; karyopherin 35.1 85 0.0029 35.4 8.4 58 364-425 531-588 (980)
115 3m1i_C Exportin-1; heat repeat 34.1 1.4E+02 0.0047 33.4 9.9 143 283-441 451-616 (1049)
116 3b2a_A TON_1937, putative unch 32.5 2.4E+02 0.0082 27.1 9.7 137 284-447 34-180 (265)
117 3gs3_A Symplekin, LD45768P; he 32.3 1.1E+02 0.0038 29.0 7.6 71 338-427 31-102 (257)
118 1lsh_A Lipovitellin (LV-1N, LV 30.3 2E+02 0.0068 32.7 10.5 150 279-445 307-468 (1056)
119 2l5a_A Histone H3-like centrom 30.1 19 0.00065 34.2 1.6 32 123-154 55-86 (235)
120 3v9r_A MHF1, uncharacterized p 29.7 22 0.00074 28.9 1.7 41 4-44 29-80 (90)
121 3ebb_A Phospholipase A2-activa 27.8 2.7E+02 0.0093 26.9 9.7 95 339-444 164-261 (304)
122 3ul1_B Importin subunit alpha- 25.4 1.1E+02 0.0039 31.0 6.8 142 288-444 148-301 (510)
123 1h3o_A Transcription initiatio 25.4 44 0.0015 26.2 2.7 35 14-48 13-47 (75)
124 3tjz_B Coatomer subunit gamma; 25.2 88 0.003 31.2 5.7 137 285-445 141-278 (355)
125 3b0c_T CENP-T, centromere prot 25.0 31 0.0011 28.8 1.9 40 5-44 22-72 (111)
126 4dra_A Centromere protein S; D 24.4 25 0.00085 29.7 1.2 40 5-44 45-95 (113)
127 3a6p_A Exportin-5; exportin-5, 24.0 2.8E+02 0.0096 31.8 10.3 90 309-406 345-455 (1204)
128 4hat_C Exportin-1; heat repeat 23.8 96 0.0033 35.2 6.2 105 315-427 447-552 (1023)
129 3ff5_A PEX14P, peroxisomal bio 23.4 48 0.0016 24.4 2.4 31 121-151 9-53 (54)
130 3nmw_A APC variant protein; AR 22.2 1.6E+02 0.0054 28.9 6.9 142 288-445 132-291 (354)
131 2z6h_A Catenin beta-1, beta-ca 21.5 2.6E+02 0.0088 29.1 8.7 99 335-445 236-335 (644)
132 3kw6_A 26S protease regulatory 20.0 45 0.0015 25.2 1.8 35 117-151 38-72 (78)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=1.1e-54 Score=408.35 Aligned_cols=162 Identities=23% Similarity=0.465 Sum_probs=157.9
Q ss_pred cccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC
Q psy11212 274 THELSVEQQLYYKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN 353 (448)
Q Consensus 274 ~h~LSkElQlyf~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N 353 (448)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|+ +|+..|.++|+|++||++|
T Consensus 2 kh~LS~Elq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl--~~l~~L~~lm~~~~ALl~N 76 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSF--KEAEVLKTCIALYFSLIKN 76 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHC
T ss_pred CcccCHHHHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHcC
Confidence 799999999999999999998 57999999999999999999999999999999998 7999999999999999999
Q ss_pred CCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccc
Q psy11212 354 QSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPS 433 (448)
Q Consensus 354 ~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t 433 (448)
|+++||||+|||+|++|||+|++++|.+ +|||+||++|+.||++|+++|++|++||+++|.|+|+||++|+++
T Consensus 77 ~~l~lepYlH~LipsvLtCll~k~l~~~-------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 77 KHVFIDPYLHQILPSLLTCVIGKSIVDD-------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp TTCCCGGGHHHHHHHHHHHHHCTTCCCH-------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHhcccCHH-------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999874 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCC
Q psy11212 434 LYGAIAGEGLVTER 447 (448)
Q Consensus 434 ~YGAl~GL~alG~~ 447 (448)
|||||+||++||++
T Consensus 150 ~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 150 QYGALYCLSILSKN 163 (196)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhHHH
Confidence 99999999999964
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.61 E-value=6.2e-16 Score=122.19 Aligned_cols=69 Identities=54% Similarity=0.723 Sum_probs=65.2
Q ss_pred ccCCCCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHH
Q psy11212 3 IYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDL 82 (448)
Q Consensus 3 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~ 82 (448)
.+++.||.+.++.+|+++|+..+.+||++.|++|++|+++..++.
T Consensus 2 ~~~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qe----------------------------------- 46 (70)
T 1taf_B 2 LYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQD----------------------------------- 46 (70)
T ss_dssp CCSCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred cccccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 467899999999999999999999999999999999999998877
Q ss_pred hhccCCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 83 LTNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 83 ~~~~~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
|.|||||+||++||++|||+||++
T Consensus 47 ---------------------------------------------A~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 47 ---------------------------------------------AAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp ---------------------------------------------HHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred ---------------------------------------------HHHHHHHcCCCeecHHHHHHHHcC
Confidence 999999999999999999999984
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.15 E-value=1.6e-11 Score=100.36 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHHhhcc
Q psy11212 7 SFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNL 86 (448)
Q Consensus 7 ~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~~~~~ 86 (448)
.|+.++++.||+..|++.|..||.+.+++++++.++..++-
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~d--------------------------------------- 50 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD--------------------------------------- 50 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 48999999999999999999999999999999999886555
Q ss_pred CCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCCC
Q psy11212 87 NPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTV 162 (448)
Q Consensus 87 ~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~s 162 (448)
|.+||+|+||+++|++||..||+.++ +|+|||.+
T Consensus 51 -----------------------------------------A~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 51 -----------------------------------------AVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp -----------------------------------------HHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred -----------------------------------------HHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 99999999999999999999999885 89999963
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.11 E-value=5.5e-11 Score=100.66 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHHhhcc
Q psy11212 7 SFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNL 86 (448)
Q Consensus 7 ~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~~~~~ 86 (448)
.|+.++++.||+..|++.|..||...+++++++.+...++-
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~d--------------------------------------- 68 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRD--------------------------------------- 68 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 48999999999999999999999999999999999886555
Q ss_pred CCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCCC
Q psy11212 87 NPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTV 162 (448)
Q Consensus 87 ~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~s 162 (448)
|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 69 -----------------------------------------A~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 69 -----------------------------------------SVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp -----------------------------------------HHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred -----------------------------------------HHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 99999999999999999999999986 89999963
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.98 E-value=3.2e-10 Score=96.13 Aligned_cols=74 Identities=16% Similarity=0.312 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHHhhcc
Q psy11212 7 SFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNL 86 (448)
Q Consensus 7 ~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~~~~~ 86 (448)
.|+..+++.||+..|+..|..+|...|++++++-+...++-
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~d--------------------------------------- 69 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRD--------------------------------------- 69 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 38999999999999999999999999999999999986665
Q ss_pred CCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCC
Q psy11212 87 NPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLT 161 (448)
Q Consensus 87 ~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~ 161 (448)
|.+|++|+||+++|++||..||+.++ +|+|||.
T Consensus 70 -----------------------------------------A~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~ 102 (103)
T 2yfw_B 70 -----------------------------------------AVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 102 (103)
T ss_dssp -----------------------------------------HHHHHHHTTCSEECHHHHHHHHHHHC--------
T ss_pred -----------------------------------------HHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCC
Confidence 99999999999999999999999998 8999996
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.97 E-value=4e-10 Score=95.48 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHHhhcc
Q psy11212 7 SFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLLTNL 86 (448)
Q Consensus 7 ~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~~~~~ 86 (448)
.|+..+++.||+..|+..|..+|...|++++++-+...++-
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~d--------------------------------------- 69 (103)
T 1tzy_D 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD--------------------------------------- 69 (103)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 38999999999999999999999999999999999986665
Q ss_pred CCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCCC
Q psy11212 87 NPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLTV 162 (448)
Q Consensus 87 ~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~s 162 (448)
|.+||+|+||+++|++||..||+.++ +|+|||.+
T Consensus 70 -----------------------------------------A~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 70 -----------------------------------------AVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -----------------------------------------HHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred -----------------------------------------HHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 99999999999999999999999997 89999963
No 7
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.34 E-value=7.9e-08 Score=75.81 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=38.0
Q ss_pred CccCC-CCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHh
Q psy11212 2 DIYGT-SFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKV 43 (448)
Q Consensus 2 ~~~~~-~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~ 43 (448)
|+.|. ++|||+++.||+|+ |++||+|+|.||| ++||++|||.
T Consensus 17 es~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 17 ESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 56677 89999999999999 9999999999999 5999999973
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.09 E-value=4.7e-07 Score=73.81 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred cCC-CCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhhcccccCCCC
Q psy11212 4 YGT-SFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVIIQPIYGLTV 53 (448)
Q Consensus 4 ~~~-~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~~ep~~g~~~ 53 (448)
.|. .+|+|++..+++.+ .+.+|++||.+|| ++||.+|||.+.+|+|||++
T Consensus 23 ~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lYgf~~ 84 (84)
T 2hue_C 23 GGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 84 (84)
T ss_dssp TTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEESCC-
T ss_pred cCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCCCC
Confidence 344 69999999999999 7999999999999 58999999998899999973
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.03 E-value=1e-06 Score=74.43 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhhcccccCCCC
Q psy11212 6 TSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVIIQPIYGLTV 53 (448)
Q Consensus 6 ~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~~ep~~g~~~ 53 (448)
..||+|++..|++.+ .+.+|++||.+|| ++||.+||+.+.+|+|||++
T Consensus 44 ~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lYGf~~ 102 (102)
T 1id3_B 44 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 102 (102)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEESSCC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCCCC
Confidence 369999999999999 7999999999999 59999999998899999974
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.67 E-value=8.4e-06 Score=68.82 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhhcccccCCCC
Q psy11212 7 SFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVIIQPIYGLTV 53 (448)
Q Consensus 7 ~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~~ep~~g~~~ 53 (448)
.+++|++..|++.+ .+.+|++||.+|+ .+||.+||+.+.+|+|||++
T Consensus 46 rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 1tzy_D 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEESCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCcCCCC
Confidence 69999999999998 6999999999999 58999999998899999973
No 11
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=3.4e-05 Score=66.80 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.5
Q ss_pred hhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCC
Q psy11212 121 AQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLT 161 (448)
Q Consensus 121 ~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~ 161 (448)
..++...|.+++.|++|++.|++||..|||..|. |||||.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 4456667999999999999999999999999999 999996
No 12
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.62 E-value=1e-05 Score=68.35 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhhcccccCCCC
Q psy11212 7 SFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVIIQPIYGLTV 53 (448)
Q Consensus 7 ~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~~ep~~g~~~ 53 (448)
.+++|++..|++.+ .+.+|++||.+|+ .+||.+||+.+-+|+|||++
T Consensus 46 rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 2yfw_B 46 RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCcCCCC
Confidence 69999999999998 6999999999999 58999999997799999963
No 13
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00011 Score=70.00 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.4
Q ss_pred hhhhhhhhcccCCccCChhHHHHHHHhcCCCCCcCCC
Q psy11212 125 ESISFKCMSHSKRVKLLPVDIDDALNMKNIEPIYGLT 161 (448)
Q Consensus 125 ~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPLyGy~ 161 (448)
...|.+|+.|++|+++|++||..|||..| .|+|||.
T Consensus 199 irdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 199 IRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 34499999999999999999999999999 9999996
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.95 E-value=0.0012 Score=51.58 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=56.5
Q ss_pred cCCCCCHHHHHHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccccCCCCCCCccccccCCCCcceeeccCccccHHHHh
Q psy11212 4 YGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASGGGRELHFTDEKEVDFEDLL 83 (448)
Q Consensus 4 ~~~~~~~~~~~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~~g~~~~~~~~f~~~~~~~~~~~~~~d~e~d~~~~~ 83 (448)
+++.||...++.|+.+.|...+..+|...+++=++.-+....+
T Consensus 3 ~~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~------------------------------------- 45 (70)
T 1ku5_A 3 MMGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAK------------------------------------- 45 (70)
T ss_dssp --CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4678999999999999999999999999888766665554333
Q ss_pred hccCCCCCcccceeeeEEEeeccCCCCCCCCCCCCcchhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 84 TNLNPKSALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 84 ~~~~p~~~~~~~~~~hwlaieg~qp~ip~np~~~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
.|..|.+|+||++++++||..|++.
T Consensus 46 -------------------------------------------dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 46 -------------------------------------------KAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp -------------------------------------------HHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred -------------------------------------------HHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 3999999999999999999999873
No 15
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.72 E-value=0.014 Score=54.22 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHH---HHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC-
Q psy11212 278 SVEQQLYYKEITEACVGSDEGRRFE---ALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN- 353 (448)
Q Consensus 278 SkElQlyf~~It~al~~~~e~~r~~---aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N- 353 (448)
......++..|.+.+.+.+...|.. +|..+-...++..++|.+...+. .+|..+=...+.++..++.+
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~--------~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS--------NKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT--------CSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHHHHc
Confidence 3445556677777777777777765 44555556677777877766543 24565556677777777766
Q ss_pred -CCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcC
Q psy11212 354 -QSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNT 407 (448)
Q Consensus 354 -~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~ 407 (448)
|.-...+|++.++|.++.|+ .+.+|.+|+.|...|+.|+...|+
T Consensus 165 ~~~~~~~~~l~~l~p~l~~~l----------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 165 QPTALNKKLLKLLTTSLVKTL----------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CGGGCCHHHHHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCccHHHHHHHHHHHHHHh----------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 44567799999999999999 367899999999999999988875
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.35 E-value=0.043 Score=54.46 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=64.0
Q ss_pred ccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhh
Q psy11212 357 YLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYG 436 (448)
Q Consensus 357 ~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YG 436 (448)
.+++|+..++|.++.++....- ...++.|..|..|+.+|..++..++. .+-+.++..+...|.++ ....+++
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~---d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~--~~~~r~a 385 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDE---NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP--DWRYRDA 385 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS---SCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhccc---ccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCC--ChHHHHH
Confidence 3567889999988877643211 01357899999999999999999984 56677888888888765 6788999
Q ss_pred hhhhhcccCC
Q psy11212 437 AIAGEGLVTE 446 (448)
Q Consensus 437 Al~GL~alG~ 446 (448)
|+.+|++++.
T Consensus 386 al~~l~~l~~ 395 (462)
T 1ibr_B 386 AVMAFGCILE 395 (462)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHHhc
Confidence 9999988874
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.33 E-value=0.023 Score=62.48 Aligned_cols=155 Identities=13% Similarity=0.242 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhcCCCc--ccchhh---HHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCc-
Q psy11212 283 LYYKEITEACVGSDEGRRFEALQSLATDPGL--HEMLPR---MCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSL- 356 (448)
Q Consensus 283 lyf~~It~al~~~~e~~r~~aL~sL~tD~gL--~qLlPy---fv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l- 356 (448)
.+...+...+.+.++..|..|++.|..=... ..+.|| ++.++...+. ..+..+-...+....++..++..
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ----DQDENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc----CCcHHHHHHHHHHHHHHhcchhHH
Confidence 3455556666667788888777766431110 112222 2333332221 13444444455556666665543
Q ss_pred -ccccchhhHHHHHHHHhhcc---------ccCCCCCCC---cchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy11212 357 -YLEKYLHELLPSILSCIVSK---------QLCGRPEAD---NHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNA 423 (448)
Q Consensus 357 -~iepYlHqLlp~lLtCll~k---------~l~~~~~~~---~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~ 423 (448)
.+.+|+..++|.++.++... +.....+.+ ..|.+|..|+..|..++..++. .+-+.++..+...
T Consensus 291 ~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 291 DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKEL 367 (852)
T ss_dssp HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 37899999999999888421 111111111 6899999999999999999873 5677888888888
Q ss_pred hcCCCCCccchhhhhhhhcccCC
Q psy11212 424 INDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 424 l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+.++ ....+.+|+.+|.+++.
T Consensus 368 l~~~--~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 368 LFHH--EWVVKESGILVLGAIAE 388 (852)
T ss_dssp HTCS--SHHHHHHHHHHHHHTTT
T ss_pred hcCC--CHHHHHHHHHHHHHHHh
Confidence 8775 57889999999988865
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.52 E-value=0.1 Score=56.38 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhcCCCc--ccchhhHH----HHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC---
Q psy11212 284 YYKEITEACVGSDEGRRFEALQSLATDPGL--HEMLPRMC----TFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ--- 354 (448)
Q Consensus 284 yf~~It~al~~~~e~~r~~aL~sL~tD~gL--~qLlPyfv----~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~--- 354 (448)
+...+.+.+.+.+...|..+++.|..=... ..+.||+. .++...+ ...+..+-...+.+..++..+.
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM----KSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT----TCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666667788888777666431110 12334433 3332222 2234444455556665655542
Q ss_pred --------------CcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy11212 355 --------------SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLL 420 (448)
Q Consensus 355 --------------~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl 420 (448)
.=++.+|+..++|.++.++-... .. ..++.|.+|..|+.+|..++..++ ..+-+.++..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~--~d-~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l 374 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN--ED-PEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFV 374 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC--CC--CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHH
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc--cc-cccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHH
Confidence 11346788889999888774321 11 135679999999999999999998 34567888888
Q ss_pred HHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 421 SNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 421 ~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
...+.++ ....+.+|+.+|.+++.
T Consensus 375 ~~~l~~~--~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 375 EQNITAD--NWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHTTCS--SHHHHHHHHHHHHHTSS
T ss_pred HHHcCCC--ChhHHHHHHHHHHHHHc
Confidence 8888765 46789999999988764
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.70 E-value=0.17 Score=54.77 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=61.0
Q ss_pred cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhh
Q psy11212 358 LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGA 437 (448)
Q Consensus 358 iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGA 437 (448)
+.+++.+++|.++..+... . .. ..++.|..|..|+.+|..++..++. .+-+.++..+...|.|+ ....+++|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~-~-~d-~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~--~~~~r~~a 386 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQ-D-EN-DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP--DWRYRDAA 386 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCC-C-SS-CCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhhcc-c-cc-ccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCC--ChHHHHHH
Confidence 4456788888877766321 1 11 1256899999999999999999984 45678888888888765 57789999
Q ss_pred hhhhcccCC
Q psy11212 438 IAGEGLVTE 446 (448)
Q Consensus 438 l~GL~alG~ 446 (448)
+.+|..++.
T Consensus 387 ~~~l~~i~~ 395 (876)
T 1qgr_A 387 VMAFGCILE 395 (876)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHHHc
Confidence 999988764
No 20
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=94.58 E-value=0.053 Score=41.64 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=24.8
Q ss_pred hhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 125 ESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 125 ~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
.++|..+.+|.||++++.+||..|++.+
T Consensus 40 ~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 40 ASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3448999999999999999999999865
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.44 E-value=0.14 Score=50.78 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=71.9
Q ss_pred HHHHH---HHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC-cccccchhhHHHHHHHHhh
Q psy11212 299 RRFEA---LQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS-LYLEKYLHELLPSILSCIV 374 (448)
Q Consensus 299 ~r~~a---L~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~-l~iepYlHqLlp~lLtCll 374 (448)
.|..| |..|...-| ..++|.++.++.+.+. ..++..-...+..+.+|..... =.+.+|+.+++|.++.++-
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~ 418 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIK----NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 45544 444444444 5778888888876654 3578777778888889888655 3578999999999998882
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q psy11212 375 SKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS 408 (448)
Q Consensus 375 ~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s 408 (448)
+.++.+|..|+..|+.++..++..
T Consensus 419 ----------d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 419 ----------DPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp ----------CSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhcccc
Confidence 356899999999999999998763
No 22
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=94.29 E-value=0.043 Score=46.64 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=25.8
Q ss_pred hhhhhhhhcccCCccCChhHHHHHHHhcC
Q psy11212 125 ESISFKCMSHSKRVKLLPVDIDDALNMKN 153 (448)
Q Consensus 125 ~~~A~Kfm~hskR~kLt~~DIn~AL~~~n 153 (448)
.+.|..|.+|++|++++.+||-.||+..+
T Consensus 45 ~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 45 SSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 33488999999999999999999999865
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.21 E-value=0.25 Score=54.19 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=89.1
Q ss_pred HHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCC
Q psy11212 303 ALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRP 382 (448)
Q Consensus 303 aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~ 382 (448)
+|..|....| ..++|.++.++.+.+. ..+...-...+..+.++.....-.+++|+.+++|.++.++
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~----~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l--------- 409 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLF----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL--------- 409 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------
Confidence 3444444334 4566666776665543 2467777777888888888877678899999999999887
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhccc
Q psy11212 383 EADNHWALRDFASRLLTQVSKNFNT-STNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 383 ~~~~hw~LRd~AA~lL~~I~~~~~~-sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~al 444 (448)
.+.++.+|..|+..|+.++...+. ........++..|.+.|.|+ ....+-.|..+|..|
T Consensus 410 -~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 410 -SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATL 469 (852)
T ss_dssp -TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 246889999999999999987653 23445667888888888875 345666666666543
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.97 E-value=0.57 Score=53.50 Aligned_cols=75 Identities=9% Similarity=0.154 Sum_probs=58.9
Q ss_pred cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchh
Q psy11212 356 LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLY 435 (448)
Q Consensus 356 l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~Y 435 (448)
-.+.||+..++|.++.++-. .+.+..+|+.|+..++.++...|......-++++..|...+.++. +.-
T Consensus 559 ~~~~~~~~~ll~~ll~~l~~--------~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~----~r~ 626 (1230)
T 1u6g_C 559 FDATPYIKDLFTCTIKRLKA--------ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI----TRL 626 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHHSC--------SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS----HHH
T ss_pred cchHHHHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch----hHH
Confidence 46789999999999998732 245568999999999999999998777777999999988887543 444
Q ss_pred hhhhhhc
Q psy11212 436 GAIAGEG 442 (448)
Q Consensus 436 GAl~GL~ 442 (448)
+++.++.
T Consensus 627 ~~~~al~ 633 (1230)
T 1u6g_C 627 TTVKALT 633 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 25
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.60 E-value=0.33 Score=52.31 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=85.5
Q ss_pred HHHHHHH---HhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC-cccccchhhHHHHHHHHh
Q psy11212 298 GRRFEAL---QSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS-LYLEKYLHELLPSILSCI 373 (448)
Q Consensus 298 ~~r~~aL---~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~-l~iepYlHqLlp~lLtCl 373 (448)
..|..|. ..|...-| ..++|.++.++.+.+. ..++..-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNIT----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcC----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3455444 44444334 4567777777766653 2567766667778888887654 456889999999888776
Q ss_pred hccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcCCCCCccchhhhhhhhc
Q psy11212 374 VSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST--NNIQTRVTRLLSNAINDPKINFPSLYGAIAGEG 442 (448)
Q Consensus 374 l~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy--~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~ 442 (448)
- +.++.+|+.|+..|+.++..++... ...-+.++..+.+.|.|+ ......|..+|.
T Consensus 421 ~----------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~ 478 (861)
T 2bpt_A 421 N----------DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTII 478 (861)
T ss_dssp G----------CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHH
T ss_pred C----------CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHH
Confidence 1 3578999999999999999887532 344667777888887664 334444444443
No 26
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=92.33 E-value=0.063 Score=48.24 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=35.3
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCCC
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEPI 157 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEPL 157 (448)
+...+.+.|..+.+|.+|++++.+||-.||..+|+|.+
T Consensus 38 f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v 75 (154)
T 1f1e_A 38 MAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGV 75 (154)
T ss_dssp HHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccC
Confidence 77889999999999999999999999999999998854
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.21 E-value=0.57 Score=50.58 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy11212 340 LIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRL 419 (448)
Q Consensus 340 L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~t 419 (448)
....++.+.+|+.+-.-.+.+|+.+++|.++.++-. .+++.+|..|..+++.|++.++......-+.++..
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 695 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN---------YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQL 695 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH---------CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 334556666666654556889999999999998743 14679999999999999999987655556788889
Q ss_pred HHHHhcCC
Q psy11212 420 LSNAINDP 427 (448)
Q Consensus 420 l~k~l~d~ 427 (448)
+.+.|.++
T Consensus 696 l~~~l~~~ 703 (876)
T 1qgr_A 696 LLENLGNE 703 (876)
T ss_dssp HHHHHTCT
T ss_pred HHHHhCCc
Confidence 99998764
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.85 E-value=1.2 Score=50.79 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=87.8
Q ss_pred HHHHHHHHHHH----hcCCCHHHHHHHHHhhhc----CC-CcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHh
Q psy11212 281 QQLYYKEITEA----CVGSDEGRRFEALQSLAT----DP-GLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALL 351 (448)
Q Consensus 281 lQlyf~~It~a----l~~~~e~~r~~aL~sL~t----D~-gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl 351 (448)
++.+...|..+ +.+.+...|..++..|.. .+ .+.+-++-++..+.+.+.... ....+....+..+..++
T Consensus 428 ~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~--~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 428 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS--SSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS--SCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCC--CcchHHHHHHHHHHHHH
Confidence 34455555554 555666667665544432 11 122222222223322222111 11244445556666666
Q ss_pred cCCCc-ccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHH
Q psy11212 352 DNQSL-YLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNT-------STNNIQTRVTRLLSNA 423 (448)
Q Consensus 352 ~N~~l-~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~-------sy~~L~~RI~~tl~k~ 423 (448)
.+-.- .+.+|+..++|.++.|+- +..|.+|..|...++.+++.++. ........++..+...
T Consensus 506 ~~~~~~~~~~~l~~llp~L~~~l~----------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 506 CNHSPQVFHPHVQALVPPVVACVG----------DPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp HSSCGGGGHHHHTTTHHHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHhHHHHHHHHHHHHHc----------ccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 54332 267899999999998771 35689999999999999999886 3334456788888888
Q ss_pred hcCCCCCccchhhhhhhhccc
Q psy11212 424 INDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 424 l~d~~~~l~t~YGAl~GL~al 444 (448)
|.+.+.....+-.|+.+|..|
T Consensus 576 l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 576 LKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HSCSSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHH
Confidence 844333445666666665543
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.83 E-value=3 Score=38.23 Aligned_cols=129 Identities=12% Similarity=0.149 Sum_probs=81.4
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHhhhcCC-Ccc-cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccc
Q psy11212 283 LYYKEITEACV-GSDEGRRFEALQSLATDP-GLH-EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLE 359 (448)
Q Consensus 283 lyf~~It~al~-~~~e~~r~~aL~sL~tD~-gL~-qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~ie 359 (448)
.++..+...+. +.+...|..|+..|..=. ++. .+-||...++- .+...+..++..+-......+.+++.+.+
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp-~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVP-SLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHH-HHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 44566666774 677777776665443211 111 11233333222 22233434556666667788888888753
Q ss_pred cchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcCCC
Q psy11212 360 KYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS--TNNIQTRVTRLLSNAINDPK 428 (448)
Q Consensus 360 pYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s--y~~L~~RI~~tl~k~l~d~~ 428 (448)
+..++|.++.++- +.+|.+|..+..+|+.+..+++.. ....-+.++..+.+.|.|+.
T Consensus 131 --~~~ll~~l~~~l~----------~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 131 --LEAQQESIVESLS----------NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189 (242)
T ss_dssp --HHHHHHHHHHHTT----------CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSC
T ss_pred --HHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 4678888777651 246899999999999999888632 23345689999999998775
No 30
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.76 E-value=0.33 Score=49.64 Aligned_cols=133 Identities=11% Similarity=0.163 Sum_probs=73.3
Q ss_pred HHHHHhcCCCHHHHHHHHHhhhcCC-------CcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccc
Q psy11212 287 EITEACVGSDEGRRFEALQSLATDP-------GLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLE 359 (448)
Q Consensus 287 ~It~al~~~~e~~r~~aL~sL~tD~-------gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~ie 359 (448)
.+.+.+.+.+...|..+...|..=. .+..++|.|...+.+. +..+-...+.....+... +..+
T Consensus 328 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~--~~~~ 397 (588)
T 1b3u_A 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE--------CPEVRLNIISNLDCVNEV--IGIR 397 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS--------CHHHHHHHHTTCHHHHHH--SCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHHHHh--cCHH
Confidence 3344455566677877776665421 1345677777666432 222111112112222211 1123
Q ss_pred cchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy11212 360 KYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIA 439 (448)
Q Consensus 360 pYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~ 439 (448)
.+...++|.++.++ .+.+|.+|..++..|+.++..++... +.+.+...+.+.|.|+. ...+..|+.
T Consensus 398 ~~~~~~lp~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~Vr~~a~~ 463 (588)
T 1b3u_A 398 QLSQSLLPAIVELA----------EDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHV--YAIREAATS 463 (588)
T ss_dssp HHHHHHHHHHHHHH----------TCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------cCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence 34566777777654 13678888888888888888877642 34567777777777653 344555555
Q ss_pred hhcc
Q psy11212 440 GEGL 443 (448)
Q Consensus 440 GL~a 443 (448)
+|..
T Consensus 464 ~l~~ 467 (588)
T 1b3u_A 464 NLKK 467 (588)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 31
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.67 E-value=0.36 Score=49.43 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhc---CCC----cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC
Q psy11212 283 LYYKEITEACVGSDEGRRFEALQSLAT---DPG----LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS 355 (448)
Q Consensus 283 lyf~~It~al~~~~e~~r~~aL~sL~t---D~g----L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~ 355 (448)
....-+.+.+.+.+...|..|++.|.. .-| ...++|.|..++.+.-. .+ +. ..+..+..+...+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~-~v--r~-~a~~~l~~l~~~~----- 234 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SV--RL-LAVEACVNIAQLL----- 234 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCH-HH--HT-THHHHHHHHHHHS-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcH-HH--HH-HHHHHHHHHHHhC-----
Confidence 334445556666777888877666543 222 35678887777654310 00 00 0122222222221
Q ss_pred cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchh
Q psy11212 356 LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLY 435 (448)
Q Consensus 356 l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~Y 435 (448)
.-+.+...++|.+..++ .+..|.+|..|+..|+.|+..++. ....+.+...|.+.+.|+. ...+-
T Consensus 235 -~~~~~~~~~~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~ 299 (588)
T 1b3u_A 235 -PQEDLEALVMPTLRQAA----------EDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCE--AEVRA 299 (588)
T ss_dssp -CHHHHHHHTHHHHHHHH----------TCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSS--HHHHH
T ss_pred -CHHHHHHHHHHHHHHHc----------cCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCc--HHHHH
Confidence 11234456777666554 246799999999999999998765 2346678888888888764 33444
Q ss_pred hhhhhhccc
Q psy11212 436 GAIAGEGLV 444 (448)
Q Consensus 436 GAl~GL~al 444 (448)
+|..+|..+
T Consensus 300 ~a~~~l~~~ 308 (588)
T 1b3u_A 300 AASHKVKEF 308 (588)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554433
No 32
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.058 Score=46.60 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhhcccccCCC
Q psy11212 6 TSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVIIQPIYGLT 52 (448)
Q Consensus 6 ~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~~ep~~g~~ 52 (448)
.-+|.+++..+.+-+ .+.+|+.||.++. ++||.+|||..=-|||||+
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~ 120 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCC
Confidence 468888988888887 5788999999998 6899999998434999997
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.10 E-value=0.11 Score=47.50 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhc-----CCCcc-----cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc-C
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLAT-----DPGLH-----EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD-N 353 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~t-----D~gL~-----qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~-N 353 (448)
|..+++.+.+++.+.|..|+..|+. ++... ..+|.|+.++.. .+.......+..+..|.. |
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGG 85 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCC
Confidence 6666777777777666666666642 11111 345666666542 345555556666666665 3
Q ss_pred CCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcCCCCCcc
Q psy11212 354 QSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS-TNNIQTRVTRLLSNAINDPKINFP 432 (448)
Q Consensus 354 ~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s-y~~L~~RI~~tl~k~l~d~~~~l~ 432 (448)
+...-.-.-...+|.++.++-. +++.+|..|+..|+.|+...... -.-+...++..|.+.|.++ +..
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~ 153 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQ 153 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHH
Confidence 3322222223477877776622 34699999999999997643322 1122344677888888765 456
Q ss_pred chhhhhhhhcccCC
Q psy11212 433 SLYGAIAGEGLVTE 446 (448)
Q Consensus 433 t~YGAl~GL~alG~ 446 (448)
...-|+..|..|..
T Consensus 154 v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 154 ILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 67777777776653
No 34
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.98 E-value=0.12 Score=40.28 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=30.2
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
-...+.++|..|.+|.+|++++.+||..|.+.+
T Consensus 34 y~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 34 YVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999999999875
No 35
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=90.82 E-value=0.39 Score=43.09 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=25.4
Q ss_pred hhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 124 LESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 124 l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
+.++|..+.+|.+|++.|.+||..||+..
T Consensus 119 I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 119 LGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 34459999999999999999999999853
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.81 E-value=2.2 Score=40.23 Aligned_cols=136 Identities=10% Similarity=0.071 Sum_probs=78.8
Q ss_pred HhcCCCHHHHHHHHHhhhc-CC-C---ccc-chh--hHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC-cccc-c
Q psy11212 291 ACVGSDEGRRFEALQSLAT-DP-G---LHE-MLP--RMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS-LYLE-K 360 (448)
Q Consensus 291 al~~~~e~~r~~aL~sL~t-D~-g---L~q-LlP--yfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~-l~ie-p 360 (448)
.+.+.+-..|++||..|.. -- | +.. -.+ -++.-+...+. ...|......-++.+.+|...=. =.++ +
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~---~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ---KDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456777788888877766 31 2 221 112 23333333331 12455444444555555543222 2467 9
Q ss_pred chhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcCCCCCccchhhhh
Q psy11212 361 YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNN--IQTRVTRLLSNAINDPKINFPSLYGAI 438 (448)
Q Consensus 361 YlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~--L~~RI~~tl~k~l~d~~~~l~t~YGAl 438 (448)
|...++|+++..+=.+ .=.+|+.|...|..||...+..... | ..++..+..+|.+. +...+.+++
T Consensus 101 y~~~llp~ll~~l~dk----------k~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k--~~~vk~~al 167 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEK----------KPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHK--TPQIRMECT 167 (249)
T ss_dssp HHHHHHHHHHHGGGCC----------CHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCC--ChHHHHHHH
Confidence 9999999999887332 2268999999999999987432111 2 23666666666543 456777776
Q ss_pred hhhc
Q psy11212 439 AGEG 442 (448)
Q Consensus 439 ~GL~ 442 (448)
..|.
T Consensus 168 ~~l~ 171 (249)
T 2qk1_A 168 QLFN 171 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 37
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=90.49 E-value=0.13 Score=42.02 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=31.5
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhcCC
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNI 154 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ni 154 (448)
|++.+.+.|..+..|.||++++.+||..|++.++.
T Consensus 43 Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 43 FISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 78888899999999999999999999999995544
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.62 E-value=1.7 Score=40.91 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCHHHHH---HHHHhhhcCC------C-cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC
Q psy11212 284 YYKEITEACVGSDEGRRF---EALQSLATDP------G-LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN 353 (448)
Q Consensus 284 yf~~It~al~~~~e~~r~---~aL~sL~tD~------g-L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N 353 (448)
.+-.|.+.+.......|+ .||..+-... + +..+++.++.++. .+|...=...+.++.+++.+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~--------~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK--------HKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT--------CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHHHH
Confidence 344455555555444443 3554444433 3 5566665554442 24555444566666666665
Q ss_pred CC---cccccch-hhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q psy11212 354 QS---LYLEKYL-HELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS 408 (448)
Q Consensus 354 ~~---l~iepYl-HqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s 408 (448)
-. -.+.+|+ -+++|.+..|+ .+..-.+|+.|..+|+.||+..|+.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l----------~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIV----------NDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHH----------TCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred cCCcchhHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 44 3477899 99999999999 2345689999999999999999973
No 39
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=89.45 E-value=0.14 Score=40.41 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=30.6
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
|++.+.++|.+..+|.+|++++.+||..|++.+
T Consensus 38 Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 38 FLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 788899999999999999999999999999853
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.12 E-value=1.6 Score=46.12 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy11212 282 QLYYKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKY 361 (448)
Q Consensus 282 Qlyf~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepY 361 (448)
..+|-.+++.+.+++...|+.+.-.+..- ...-|-++..+.+.+..-+...|...=.. .+++|-.= .....
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~---~~~~~e~~~l~~n~l~kdL~~~n~~ir~~---AL~~L~~i---~~~~~ 118 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNY---AKSQPDMAIMAVNSFVKDCEDPNPLIRAL---AVRTMGCI---RVDKI 118 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHH---HHHSHHHHHTTHHHHGGGSSSSSHHHHHH---HHHHHHTC---CSGGG
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cccCchHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHcC---ChHHH
Confidence 34566677766666666565443222210 00012233333344444443345432211 23444322 23335
Q ss_pred hhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhcCCCCCccchhhhhh
Q psy11212 362 LHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQ--TRVTRLLSNAINDPKINFPSLYGAIA 439 (448)
Q Consensus 362 lHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~--~RI~~tl~k~l~d~~~~l~t~YGAl~ 439 (448)
...++|.+..|+- +.+..+|..|+..+..|++.+ +.+- ..++..+.+.|.|+ .....++|+.
T Consensus 119 ~~~l~~~l~~~L~----------d~~~~VRk~A~~al~~i~~~~----p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~ 182 (591)
T 2vgl_B 119 TEYLCEPLRKCLK----------DEDPYVRKTAAVCVAKLHDIN----AQMVEDQGFLDSLRDLIADS--NPMVVANAVA 182 (591)
T ss_dssp HHHHHHHHHHHSS----------CSCHHHHHHHHHHHHHHHHSS----CCCHHHHHHHHHHHHTTSCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHhhC----hhhcccccHHHHHHHHhCCC--ChhHHHHHHH
Confidence 5567788888872 356799999999999999954 3333 36888888888765 5678899999
Q ss_pred hhcccCCC
Q psy11212 440 GEGLVTER 447 (448)
Q Consensus 440 GL~alG~~ 447 (448)
.|..++..
T Consensus 183 aL~~i~~~ 190 (591)
T 2vgl_B 183 ALSEISES 190 (591)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 98887653
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.18 E-value=0.5 Score=42.56 Aligned_cols=140 Identities=9% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHhcCCCHHHHHHHHHhhhc---CCC--c-----ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC-CC
Q psy11212 287 EITEACVGSDEGRRFEALQSLAT---DPG--L-----HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN-QS 355 (448)
Q Consensus 287 ~It~al~~~~e~~r~~aL~sL~t---D~g--L-----~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N-~~ 355 (448)
.+.+.+.+++.+.|..|+..|.. +.. . ...+|.++.++.+ .+.......+..+..|..+ +.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--------TDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--------CCHHHHHHHHHHHHHHHcCChH
Confidence 34445555555555544443322 211 0 1356666666642 3556666677777777766 33
Q ss_pred cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcCCCCCccch
Q psy11212 356 LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNT-STNNIQTRVTRLLSNAINDPKINFPSL 434 (448)
Q Consensus 356 l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~-sy~~L~~RI~~tl~k~l~d~~~~l~t~ 434 (448)
..-...-+..+|.++.++- ++...+|..|+..|..++..... .-.-+...++..+.+.+.++ .....
T Consensus 78 ~~~~~~~~~~i~~l~~ll~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~ 145 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLT----------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQ 145 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTT----------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHH
Confidence 2222223356787777663 13468999999999999853211 00112234567777777765 35567
Q ss_pred hhhhhhhcccCC
Q psy11212 435 YGAIAGEGLVTE 446 (448)
Q Consensus 435 YGAl~GL~alG~ 446 (448)
..|+..|..|..
T Consensus 146 ~~a~~~L~~l~~ 157 (252)
T 4hxt_A 146 KEAARALANIAS 157 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 777777776653
No 42
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=88.16 E-value=0.22 Score=40.07 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.9
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCC
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEP 156 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEP 156 (448)
-.+...|..++.|+||.++++.||..|.+.++...
T Consensus 45 v~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~~ 79 (82)
T 3nqj_A 45 VHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEE 79 (82)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCccCcHHHHHHHHHHccccc
Confidence 34667788999999999999999999999998753
No 43
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=87.61 E-value=0.23 Score=39.49 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=28.8
Q ss_pred hhhhhhhhhhcccCCccCChhHHHHHHHhcCC
Q psy11212 123 KLESISFKCMSHSKRVKLLPVDIDDALNMKNI 154 (448)
Q Consensus 123 ~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ni 154 (448)
.+...|..++.|+||.++++.||..|.+.+|.
T Consensus 44 ~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 44 ALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 45677899999999999999999999999874
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.45 E-value=6.2 Score=36.54 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccC
Q psy11212 386 NHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVT 445 (448)
Q Consensus 386 ~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG 445 (448)
.++.+|..|+..|+.++... +...+.+...|.+.|.|+ +....+.|+.+|..+|
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~----~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKN----PIYSPKIVEQSQITAFDK--STNVRRATAFAISVIN 156 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHhccC----CcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcC
Confidence 34556666666666665432 122334455555555443 3344555555555554
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=87.04 E-value=0.45 Score=42.20 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhc----CCCcc------cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc-
Q psy11212 284 YYKEITEACVGSDEGRRFEALQSLAT----DPGLH------EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD- 352 (448)
Q Consensus 284 yf~~It~al~~~~e~~r~~aL~sL~t----D~gL~------qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~- 352 (448)
+|..+...+.++++..|..|+..|+. ++... ..+|.++.++.+ .|.......+..+..|..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASG 84 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcC
Confidence 35556666666676666655544432 11111 456777776642 355566666667777764
Q ss_pred CCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcCCCCCc
Q psy11212 353 NQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST-NNIQTRVTRLLSNAINDPKINF 431 (448)
Q Consensus 353 N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy-~~L~~RI~~tl~k~l~d~~~~l 431 (448)
|+...-.-.-+..+|.++.++-. .+..+|..|+..|..|+....... .-+...++..|.+.|.++ +.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 152 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NE 152 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CH
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC----------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CH
Confidence 33322222224578888887622 246899999999999985321110 112334667777777765 44
Q ss_pred cchhhhhhhhcccC
Q psy11212 432 PSLYGAIAGEGLVT 445 (448)
Q Consensus 432 ~t~YGAl~GL~alG 445 (448)
....-|+..|..|.
T Consensus 153 ~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 153 QILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665553
No 46
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=84.89 E-value=1.6 Score=43.00 Aligned_cols=143 Identities=11% Similarity=0.155 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhc------CCCcc------cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLAT------DPGLH------EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD 352 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~t------D~gL~------qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~ 352 (448)
...+++.+.++++..|..|+..|+. ++.+. .++|.|+.++... .|........+.+..|..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~-------~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK-------ENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC-------CCHHHHHHHHHHHHHHhc
Confidence 4456667777888888887776653 33322 5778887777533 245555556666666665
Q ss_pred CCCcccccch-hhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcCCCCC
Q psy11212 353 NQSLYLEKYL-HELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS-TNNIQTRVTRLLSNAINDPKIN 430 (448)
Q Consensus 353 N~~l~iepYl-HqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s-y~~L~~RI~~tl~k~l~d~~~~ 430 (448)
...=.....+ ..++|.++.++-. .+..+|+.|+..|+.|+...... ..-+...++..|.+.+.+. .+
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~ 163 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSS----------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NR 163 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CC
Confidence 3321111112 4578887777621 35689999999999998642100 0011123455566665531 23
Q ss_pred ccchhhhhhhhcccC
Q psy11212 431 FPSLYGAIAGEGLVT 445 (448)
Q Consensus 431 l~t~YGAl~GL~alG 445 (448)
......|+.+|..|.
T Consensus 164 ~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 164 LTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555443
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.64 E-value=3.6 Score=36.10 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 385 DNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 385 ~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+.+|.+|..|+..|+.+.. +.....|.+.+.|+ +......|+.+|..+|.
T Consensus 118 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 167 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 3567888888888887742 23555666777665 46788888888888775
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.40 E-value=8 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=33.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 385 DNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 385 ~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+.++.+|..|+..|+.+. .. .+.+...|.+.|.|+ .......|+.+|..+|.
T Consensus 170 d~~~~vr~~a~~aL~~~~----~~----~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININK----YD----NSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSSHHHHHHHHHHHHHHT----CC----CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhhc----cC----cHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Confidence 345667777777776652 11 234556666666665 45677788888877774
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.70 E-value=4.5 Score=35.79 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=35.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 385 DNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 385 ~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+.+|.+|..|+..|+.+.. +.....|.+.+.|+ +....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 4567888888888887732 23455666667655 45688888888888774
No 50
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=83.56 E-value=0.34 Score=39.67 Aligned_cols=31 Identities=16% Similarity=-0.033 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 121 AQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 121 ~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
...+...+..|++|.+|++.+++||..|+|-
T Consensus 49 ~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 49 LGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4556677899999999999999999999874
No 51
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=83.11 E-value=0.32 Score=41.03 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=28.0
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
....+...|..|.+|.+|++++++||..|+|.
T Consensus 55 ~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 55 QCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 45567778999999999999999999999875
No 52
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.99 E-value=8.8 Score=36.03 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC---CCcc
Q psy11212 282 QLYYKEITEACVGS-DEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN---QSLY 357 (448)
Q Consensus 282 Qlyf~~It~al~~~-~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N---~~l~ 357 (448)
..+...+++-+.++ ....|..+++.|-.=-........++..+.... .++|..+....+..+..++.+ ..+.
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l----~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF----EKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG----GCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 33444556655443 445566655544321111122233344444443 336777666666666666665 4455
Q ss_pred cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC--------CcchHHHHHHHHHHHhc
Q psy11212 358 LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS--------TNNIQTRVTRLLSNAIN 425 (448)
Q Consensus 358 iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s--------y~~L~~RI~~tl~k~l~ 425 (448)
..+.+-.+++.+..|+=. ..=.+|+-|..++..+++..|.. ..+|++-..+.|-+.|-
T Consensus 177 ~k~~l~~i~~~l~k~l~d----------~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 177 VQTFLPELLKHVPQLAGH----------GDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HHHHHHHHGGGHHHHHTC----------SSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 666777777777777622 22389999999999999988753 26788888888888875
No 53
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=82.60 E-value=3.9 Score=40.15 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhh---hcCCC-c------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSL---ATDPG-L------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL---~tD~g-L------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~ 354 (448)
...+.+.+.+++...|..|+..| ..+.. . ...+|.|+.++.+. .+.......+..+..|..+.
T Consensus 109 i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-------~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-------NRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-------CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhCCC
Confidence 44455666667777777655444 43321 0 24678888777521 35666677778888888664
Q ss_pred --CcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcCCCCCc
Q psy11212 355 --SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST-NNIQTRVTRLLSNAINDPKINF 431 (448)
Q Consensus 355 --~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy-~~L~~RI~~tl~k~l~d~~~~l 431 (448)
... ...+..++|.++.++- +++..+|..|+..|+.++....... .-....++..|.+.|.++ ..
T Consensus 182 ~~~~~-~~~~~~~l~~L~~~l~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 248 (450)
T 2jdq_A 182 SPPPE-FAKVSPCLNVLSWLLF----------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DY 248 (450)
T ss_dssp SSCCC-GGGTGGGHHHHHHHTT----------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CH
T ss_pred CCCCC-HHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--ch
Confidence 333 3345888998888762 1345899999999999885321100 011223566666777654 34
Q ss_pred cchhhhhhhhcccC
Q psy11212 432 PSLYGAIAGEGLVT 445 (448)
Q Consensus 432 ~t~YGAl~GL~alG 445 (448)
.....|+..|..++
T Consensus 249 ~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 249 KVVSPALRAVGNIV 262 (450)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 55666666666554
No 54
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=82.16 E-value=0.76 Score=39.86 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=33.1
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCC
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIE 155 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niE 155 (448)
|++.+.+.|..+.+|.+|++++.+||-.||+.++..
T Consensus 44 FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 44 FAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 788899999999999999999999999999997743
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=82.04 E-value=1.8 Score=39.33 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=84.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHhh---hc-CCCc------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC
Q psy11212 286 KEITEACVGSDEGRRFEALQSL---AT-DPGL------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS 355 (448)
Q Consensus 286 ~~It~al~~~~e~~r~~aL~sL---~t-D~gL------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~ 355 (448)
..+.+.+.++++..|..|+..| .. ++.. ...+|.++.++.+ .|..+....+..+..|..++.
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~ 128 (252)
T 4db8_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGN 128 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHhhcCCc
Confidence 4456666666776676655444 33 2211 1256666665532 456667777788888888876
Q ss_pred ccccc-chhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcCCCCCccc
Q psy11212 356 LYLEK-YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTN-NIQTRVTRLLSNAINDPKINFPS 433 (448)
Q Consensus 356 l~iep-YlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~-~L~~RI~~tl~k~l~d~~~~l~t 433 (448)
...+. .-...+|.++.++- +.++.+|..|+..|+.++........ -+...++..|.+.|.++ +...
T Consensus 129 ~~~~~~~~~~~i~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 196 (252)
T 4db8_A 129 EQIQAVIDAGALPALVQLLS----------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 196 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHH
T ss_pred hHHHHHHHCCCHHHHHHHHh----------CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHH
Confidence 65332 33458888888772 23679999999999999853211100 11233566777777765 4556
Q ss_pred hhhhhhhhcccC
Q psy11212 434 LYGAIAGEGLVT 445 (448)
Q Consensus 434 ~YGAl~GL~alG 445 (448)
..-|+..|..|.
T Consensus 197 ~~~a~~~L~~l~ 208 (252)
T 4db8_A 197 LQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=80.86 E-value=7.7 Score=41.42 Aligned_cols=139 Identities=9% Similarity=0.059 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhh
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHE 364 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHq 364 (448)
|-.+++.+.+++...|+.++--+..-..-+ |-++.-+.+.+.+-+...|-..-..-++.+-.+ .+ .-++..
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~---~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i-~~-----~e~~~~ 146 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSN---SELIRLINNAIKNDLASRNPTFMGLALHCIANV-GS-----REMAEA 146 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-CC-----HHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-CC-----HHHHHH
Confidence 555666555556555554332222211111 222333333443334334544333344444333 22 346778
Q ss_pred HHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhccc
Q psy11212 365 LLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 365 Llp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~al 444 (448)
++|.|..|+.+. +.+..+|..|+-.+.++++.+....+. +.+...+.+.|.|+ .....++|+..|..+
T Consensus 147 l~~~v~~~l~~~--------d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 147 FAGEIPKILVAG--------DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQ--HLGVVTAATSLITTL 214 (621)
T ss_dssp HTTHHHHHHHCS--------SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCC--CccHHHHHHHHHHHH
Confidence 999999998542 456799999999999999986544331 15566666666654 457788888766544
No 57
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=80.85 E-value=0.58 Score=41.30 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.8
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhcCCCC
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMKNIEP 156 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niEP 156 (448)
-.+...|..++.|+||.++++.||..|.+.+++..
T Consensus 103 v~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~~ 137 (140)
T 3nqu_A 103 VHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEE 137 (140)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHhccccc
Confidence 34567788999999999999999999999998753
No 58
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=80.30 E-value=2 Score=37.61 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.8
Q ss_pred hhhhhhcccCCccCChhHHHHHHHhcCC
Q psy11212 127 ISFKCMSHSKRVKLLPVDIDDALNMKNI 154 (448)
Q Consensus 127 ~A~Kfm~hskR~kLt~~DIn~AL~~~ni 154 (448)
.|..++.|+||.++++.||..|.+.++.
T Consensus 107 da~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 107 DTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 3889999999999999999999999874
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.67 E-value=9.7 Score=33.52 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhh
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHE 364 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHq 364 (448)
...+.+.+.+.+...|..|+..|..-.. ...+|.++.++.+ .|..+-...++.+..+ .+ .+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~-~~---------~~ 143 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD-ERAVEPLIKALKD--------EDWFVRIAAAFALGEI-GD---------ER 143 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHH-CC---------GG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHc-CC---------HH
Confidence 4455666666777778777777765332 3455666665532 3443333333333222 11 24
Q ss_pred HHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhccc
Q psy11212 365 LLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 365 Llp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~al 444 (448)
.+|.++.++ . +.++.+|..|+..|+.+.. +.+...|.+.+.|+ +.....-|+.+|..+
T Consensus 144 ~~~~L~~~l-~---------d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 144 AVEPLIKAL-K---------DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG--TGFARKVAVNYLETH 201 (211)
T ss_dssp GHHHHHHHT-T---------CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC--CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH-c---------CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC--CHHHHHHHHHHHHhc
Confidence 566665554 1 3467999999999998832 56677777777765 456888888888887
Q ss_pred CCC
Q psy11212 445 TER 447 (448)
Q Consensus 445 G~~ 447 (448)
+..
T Consensus 202 ~~~ 204 (211)
T 3ltm_A 202 KSF 204 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.04 E-value=8.9 Score=33.48 Aligned_cols=49 Identities=12% Similarity=-0.037 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 386 NHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 386 ~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
.++.+|..|+..|+.+. .+.....|.+.+.|+ ......-|+.+|..+..
T Consensus 150 ~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIG----------GERVRAAMEKLAETG--TGFARKVAVNYLETHKS 198 (201)
T ss_dssp SSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCC--CHHHHHHHHHHHHHHHh
Confidence 56789999999988872 145666777777665 35577778777777654
No 61
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=78.46 E-value=0.76 Score=37.78 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=30.7
Q ss_pred cchhhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 119 KSAQKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 119 ~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
-|++.+...|...+++.||++++.+||..|++..
T Consensus 52 ~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 52 IFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 4888999999999999999999999999998653
No 62
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=78.08 E-value=0.67 Score=39.45 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 121 AQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 121 ~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
...+...+..|.+|.+|++.+++||..|+|-
T Consensus 64 ~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 64 CENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5567778899999999999999999999874
No 63
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=77.75 E-value=0.98 Score=41.42 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=32.9
Q ss_pred chhhhhhhhhhhhcccCCccCChhHHHHHHHhcCCC
Q psy11212 120 SAQKLESISFKCMSHSKRVKLLPVDIDDALNMKNIE 155 (448)
Q Consensus 120 ~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niE 155 (448)
|+..+.+.|..+..|.+|++++.+||-.||+-++.+
T Consensus 49 FI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 49 FIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 788888999999999999999999999999977765
No 64
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=76.62 E-value=0.92 Score=37.78 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.4
Q ss_pred hhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 123 KLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 123 ~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
.+...|..++.|+||.++++.||..|.+.+
T Consensus 71 ~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 71 GLLEHTNLLALHAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHHhC
Confidence 466778999999999999999999998753
No 65
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=76.18 E-value=5.4 Score=40.83 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHHhcCCCHHHHHHHHHhh---hcCC-------CcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC-C
Q psy11212 287 EITEACVGSDEGRRFEALQSL---ATDP-------GLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ-S 355 (448)
Q Consensus 287 ~It~al~~~~e~~r~~aL~sL---~tD~-------gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~-~ 355 (448)
.+++.+.+.+...|..|+..| ..+. .-...+|.++..+.+ .+..+....+..+..|..+. .
T Consensus 177 ~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 177 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--------NKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--------CCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--------CCHHHHHHHHHHHHHHhCCCCC
Confidence 344455556666666555444 3332 113467777776643 35666777788888888764 2
Q ss_pred cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcCCCCCccch
Q psy11212 356 LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTN-NIQTRVTRLLSNAINDPKINFPSL 434 (448)
Q Consensus 356 l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~-~L~~RI~~tl~k~l~d~~~~l~t~ 434 (448)
..-..+...++|.++.++- .....+|..|+.+|+.++........ -+...++..|...|.++ .....
T Consensus 249 ~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~ 316 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIY----------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQ 316 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTT----------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHH
T ss_pred CCcHHHHHhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhH
Confidence 2234456788888877662 12368999999999999853211001 11224566777777754 34556
Q ss_pred hhhhhhhcccC
Q psy11212 435 YGAIAGEGLVT 445 (448)
Q Consensus 435 YGAl~GL~alG 445 (448)
..|+..|..+.
T Consensus 317 ~~a~~~L~~l~ 327 (530)
T 1wa5_B 317 TPALRAVGNIV 327 (530)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 66
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=76.04 E-value=14 Score=37.49 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhc----C--CCc-----ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLAT----D--PGL-----HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN 353 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~t----D--~gL-----~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N 353 (448)
...+++.+.++++..|..|+..|+. + +.+ ..++|.|+.++... ++..+....+..+..|...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-------DFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCC
Confidence 5667777777888777776665532 2 222 25789999988643 1233333344444444443
Q ss_pred CC-cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy11212 354 QS-LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSK 403 (448)
Q Consensus 354 ~~-l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~ 403 (448)
.. ..-...-+..+|.++..+-. .+..+|+.|+..|+.|+.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNVAG 189 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcC----------CCHHHHHHHHHHHHHHhC
Confidence 21 11111112456665554421 234666666666666653
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=75.69 E-value=5.9 Score=34.72 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhc----CCCc------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLAT----DPGL------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~t----D~gL------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~ 354 (448)
...+.+.+.++++..|..|+..|.. ++.. ...+|.++.++.+ .|..+....+..+..|..+.
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGG 127 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--------CcHHHHHHHHHHHHHHHcCC
Confidence 4456666667777777666555542 2222 2367777777643 35555555666666666433
Q ss_pred Cccccc-chhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcCCCCCcc
Q psy11212 355 SLYLEK-YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTN-NIQTRVTRLLSNAINDPKINFP 432 (448)
Q Consensus 355 ~l~iep-YlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~-~L~~RI~~tl~k~l~d~~~~l~ 432 (448)
.-..+. .-+..+|.++.++-. .+..+|..|+..|..+|......-. -....++..|.+.+.++ +..
T Consensus 128 ~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~ 195 (210)
T 4db6_A 128 NEQIQAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEK 195 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHH
T ss_pred HHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHH
Confidence 222221 124578888877632 2458999999999999864211101 11223566777877754 456
Q ss_pred chhhhhhhhcccC
Q psy11212 433 SLYGAIAGEGLVT 445 (448)
Q Consensus 433 t~YGAl~GL~alG 445 (448)
.+.-|...|..|.
T Consensus 196 v~~~a~~aL~~l~ 208 (210)
T 4db6_A 196 IQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 6777777776664
No 68
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=75.11 E-value=1.1 Score=39.52 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 121 AQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 121 ~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
...+-..+..|.+|.+|++.+++||..|+|-
T Consensus 56 ~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 56 AENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5567778899999999999999999999985
No 69
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=75.07 E-value=4.9 Score=35.82 Aligned_cols=141 Identities=7% Similarity=0.045 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHH---hhhcC-CCcc------cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHh-cC
Q psy11212 285 YKEITEACVGSDEGRRFEALQ---SLATD-PGLH------EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALL-DN 353 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~---sL~tD-~gL~------qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl-~N 353 (448)
...+++.+.+++...|..|+. .|..+ +... ..+|.++.++. ..+.......+..+..|. .+
T Consensus 46 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~--------~~~~~v~~~a~~~L~~l~~~~ 117 (252)
T 4hxt_A 46 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--------STDSEVQKEAARALANIASGP 117 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--------CSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc--------CCCHHHHHHHHHHHHHHHcCC
Confidence 455666666667666665544 44433 2211 34666666654 246667777778888887 44
Q ss_pred CCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcCCCCCcc
Q psy11212 354 QSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS-TNNIQTRVTRLLSNAINDPKINFP 432 (448)
Q Consensus 354 ~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s-y~~L~~RI~~tl~k~l~d~~~~l~ 432 (448)
+...-...-+..+|.++.++- .+++.+|..|+.+|+.++...... ..-+...++..|.+.+.++ ...
T Consensus 118 ~~~~~~~~~~~~i~~L~~~l~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~ 185 (252)
T 4hxt_A 118 DEAIKAIVDAGGVEVLVKLLT----------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSE 185 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHH
T ss_pred HHHHHHHHHCCCHHHHHHHHc----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHH
Confidence 443333333467888777763 234789999999999998632111 1112334677788887754 346
Q ss_pred chhhhhhhhcccC
Q psy11212 433 SLYGAIAGEGLVT 445 (448)
Q Consensus 433 t~YGAl~GL~alG 445 (448)
....|+..|..+.
T Consensus 186 v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 186 VQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6666776666654
No 70
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.28 E-value=4.5 Score=41.45 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=84.2
Q ss_pred HHHHHHhcCCCHHHHHH---HHHhhhcCC--C-----cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC
Q psy11212 286 KEITEACVGSDEGRRFE---ALQSLATDP--G-----LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS 355 (448)
Q Consensus 286 ~~It~al~~~~e~~r~~---aL~sL~tD~--g-----L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~ 355 (448)
..+...+...+...|.. +|..|..+. . ...++|.++..+.. .|..+....+..+..|..+..
T Consensus 218 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--------~d~~v~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS--------MDTETLVDACWAISYLSDGPQ 289 (530)
T ss_dssp HHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC--------CCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCCCH
Confidence 34455555556665554 445555443 1 23567777766532 456666677777777776643
Q ss_pred cccccch-hhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcCCCCCccc
Q psy11212 356 LYLEKYL-HELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST-NNIQTRVTRLLSNAINDPKINFPS 433 (448)
Q Consensus 356 l~iepYl-HqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy-~~L~~RI~~tl~k~l~d~~~~l~t 433 (448)
-.++..+ ..++|.++.++- ...|.+|..|..+|+.|+....... .-+...++..|.+.|.++ ....
T Consensus 290 ~~~~~~~~~~~v~~Lv~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v 357 (530)
T 1wa5_B 290 EAIQAVIDVRIPKRLVELLS----------HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENI 357 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGG----------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred HHHHHHHhcCcHHHHHHHHC----------CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHH
Confidence 2233333 267777777662 2358999999999999985321110 012335667788888766 4566
Q ss_pred hhhhhhhhcccC
Q psy11212 434 LYGAIAGEGLVT 445 (448)
Q Consensus 434 ~YGAl~GL~alG 445 (448)
..-|+..|..|+
T Consensus 358 r~~A~~aL~~l~ 369 (530)
T 1wa5_B 358 KKEACWTISNIT 369 (530)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.83 E-value=6.7 Score=41.66 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=52.0
Q ss_pred chhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy11212 361 YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAG 440 (448)
Q Consensus 361 YlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~G 440 (448)
.+..++|.+..|+-. .+..+|..|+..+..|++.+ +.+-.++...+.+.|.|+ .....++|+..
T Consensus 139 ~~~~l~~~l~~~L~~----------~~~~VRk~A~~al~~l~~~~----p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~ 202 (618)
T 1w63_A 139 MCRDLAGEVEKLLKT----------SNSYLRKKAALCAVHVIRKV----PELMEMFLPATKNLLNEK--NHGVLHTSVVL 202 (618)
T ss_dssp HHHHHHHHHHHHHHS----------CCHHHHHHHHHHHHHHHHHC----GGGGGGGGGGTTTSTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHC----hHHHHHHHHHHHHHhCCC--CHhHHHHHHHH
Confidence 456678888888843 34589999999999999975 444456666666777654 57788888888
Q ss_pred hcccCC
Q psy11212 441 EGLVTE 446 (448)
Q Consensus 441 L~alG~ 446 (448)
|..+++
T Consensus 203 L~~i~~ 208 (618)
T 1w63_A 203 LTEMCE 208 (618)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 877764
No 72
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=70.95 E-value=13 Score=39.54 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHh---hhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCccc
Q psy11212 282 QLYYKEITEACVGSDEGRRFEALQS---LATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYL 358 (448)
Q Consensus 282 Qlyf~~It~al~~~~e~~r~~aL~s---L~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~i 358 (448)
+.|+..|...+.++|..-|..||+. |.+...+..++..|..|+.+. |.+.-..+++.+..+..+=
T Consensus 349 ~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~--------d~e~r~~~v~~I~~la~k~---- 416 (618)
T 1w63_A 349 QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC--------EPEFKADCASGIFLAAEKY---- 416 (618)
T ss_dssp GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHh----
Confidence 3456677777777788888877765 456666888999999998742 3444444555555555431
Q ss_pred ccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhh
Q psy11212 359 EKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAI 438 (448)
Q Consensus 359 epYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl 438 (448)
.+-.+..++.++.++-... . .+++.+...+..|+++ ++.++..++..+.+.|.++...-...-.++
T Consensus 417 ~~~~~~~v~~ll~lL~~~~--~--------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~ 482 (618)
T 1w63_A 417 APSKRWHIDTIMRVLTTAG--S--------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAA 482 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTG--G--------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcc--c--------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 1233444555554442211 0 1233345566667665 578888899999888886432222333455
Q ss_pred hhhcccC
Q psy11212 439 AGEGLVT 445 (448)
Q Consensus 439 ~GL~alG 445 (448)
+.|+.+|
T Consensus 483 wilGEy~ 489 (618)
T 1w63_A 483 WCIGEYG 489 (618)
T ss_dssp HHHHHHH
T ss_pred HHHhhhH
Confidence 5555554
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=69.91 E-value=3 Score=34.61 Aligned_cols=122 Identities=10% Similarity=-0.014 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCccccc
Q psy11212 281 QQLYYKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEK 360 (448)
Q Consensus 281 lQlyf~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iep 360 (448)
+.-+...+.+.+.+.+...|..|+..|..-..-. +|.++..+. ..|..+ -...++||-.-..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~--~~~L~~~L~--------d~~~~v---R~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA--FEPLLESLS--------NEDWRI---RGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSSTT--HHHHHHGGG--------CSCHHH---HHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH--HHHHHHHHc--------CCCHHH---HHHHHHHHHhcCC-----
Confidence 4445566677777667777777766665432221 355554432 133322 2335555544332
Q ss_pred chhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy11212 361 YLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAG 440 (448)
Q Consensus 361 YlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~G 440 (448)
...+|.++.++- +.+|.+|..|+..|+.+.. ++....|.+.+.|+ ......-|+.+
T Consensus 72 --~~a~~~L~~~L~----------d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~--~~~vr~~A~~a 127 (131)
T 1te4_A 72 --ERAVEPLIKLLE----------DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG--TGFARKVAVNY 127 (131)
T ss_dssp --HHHHHHHHHHHH----------HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC--CTHHHHHHHHH
T ss_pred --HHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 345777777661 4568999999999998752 45677788888765 45677778777
Q ss_pred hccc
Q psy11212 441 EGLV 444 (448)
Q Consensus 441 L~al 444 (448)
|..+
T Consensus 128 L~~i 131 (131)
T 1te4_A 128 LETH 131 (131)
T ss_dssp GGGC
T ss_pred HHhC
Confidence 7643
No 74
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=69.67 E-value=1.1 Score=40.00 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.3
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhcCCC
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMKNIE 155 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~niE 155 (448)
-.+...|..++.|+||.++++.||..|.+.++..
T Consensus 119 V~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 119 VHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 3456778899999999999999999999988753
No 75
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=69.47 E-value=1.7 Score=37.40 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=27.7
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
..+-.+|.+++++.||++||..||..|.+++
T Consensus 69 erIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 69 ERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 3567789999999999999999999999875
No 76
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=68.33 E-value=1.1 Score=37.00 Aligned_cols=33 Identities=3% Similarity=0.070 Sum_probs=26.5
Q ss_pred cchhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 119 KSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 119 ~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
-+++.+...|.++.++.+|++++.+||..|.+.
T Consensus 44 ~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 44 LFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 378889999999999999999999999998775
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=68.30 E-value=44 Score=32.18 Aligned_cols=110 Identities=9% Similarity=0.085 Sum_probs=66.7
Q ss_pred cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccch-hhHHHHHHHHhhccccCCCCCCCcchHHHHH
Q psy11212 315 EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYL-HELLPSILSCIVSKQLCGRPEADNHWALRDF 393 (448)
Q Consensus 315 qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYl-HqLlp~lLtCll~k~l~~~~~~~~hw~LRd~ 393 (448)
..+|.|++.+... .+.......+..+..|..|..-..+..+ +..+|.++.++-. .+..+|..
T Consensus 124 g~l~~Ll~LL~~~-------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~----------~d~~v~~~ 186 (296)
T 1xqr_A 124 GALRKLLRLLDRD-------ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----------QVQKLKVK 186 (296)
T ss_dssp THHHHHHHHHHHC-------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----------SCHHHHHH
T ss_pred CCHHHHHHHHccC-------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHH
Confidence 4678888888642 2455555666677777766543333332 5788888887732 24589999
Q ss_pred HHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcCCCCCccchhhhhhhhcc
Q psy11212 394 ASRLLTQVSKNFNTSTNN-IQTRVTRLLSNAINDPKINFPSLYGAIAGEGL 443 (448)
Q Consensus 394 AA~lL~~I~~~~~~sy~~-L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~a 443 (448)
|+.+|+.++......-.. ...-++..|.+.|.++ ....+.-|+.+|.+
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHH
Confidence 999999998862211111 1334566677777655 34455555555544
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=67.42 E-value=13 Score=40.88 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy11212 341 IYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLL 420 (448)
Q Consensus 341 ~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl 420 (448)
..+-++.+-+-.|+ .|+..+++.++.++-. -.+|..|+..+..+|+.++.....--+.|+..|
T Consensus 511 ~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~~------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 511 FTIGALSEWLADHP-----VMINSVLPLVLHALGN------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp HHHHHTHHHHHHCH-----HHHTTTHHHHHHHTTC------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCH-----HHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444555444443 5777777777777611 268999999999999998765544457788888
Q ss_pred HHHhcCCCCC---ccchhhhhhhh
Q psy11212 421 SNAINDPKIN---FPSLYGAIAGE 441 (448)
Q Consensus 421 ~k~l~d~~~~---l~t~YGAl~GL 441 (448)
.+.+..+.-+ ....|.|+..+
T Consensus 574 ~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCChHHHHHHHHHHHHH
Confidence 8877754322 22335555443
No 79
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=66.70 E-value=2.1 Score=36.98 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
..+-.+|.+++++.||++||..||..|.+++
T Consensus 72 erIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 72 ERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3567789999999999999999999999875
No 80
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=66.52 E-value=12 Score=41.52 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCcc--cc--cchhhHH-HHHHHHhhccc--cC---CCCC--------CCcchHHHHHHHHH
Q psy11212 336 NLALLIYLMRMVKALLDNQSLY--LE--KYLHELL-PSILSCIVSKQ--LC---GRPE--------ADNHWALRDFASRL 397 (448)
Q Consensus 336 nl~~L~~ll~~v~ALl~N~~l~--ie--pYlHqLl-p~lLtCll~k~--l~---~~~~--------~~~hw~LRd~AA~l 397 (448)
+-......+.+..+++..+... +. +|+.+|+ +.++.++.-+. .. ..|. .++.|.+|..|+.+
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4456667788888888776531 33 8899999 77777774321 11 1110 24568999999999
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhc----CCCCCccchhhhhhhhccc
Q psy11212 398 LTQVSKNFNTSTNNIQTRVTRLLSNAIN----DPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 398 L~~I~~~~~~sy~~L~~RI~~tl~k~l~----d~~~~l~t~YGAl~GL~al 444 (448)
|..++..|+. .+-+-++..+...|. ++......+.||+..+.++
T Consensus 385 L~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 385 LKELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999999983 333334444444343 3444567888998877776
No 81
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=66.39 E-value=2.2 Score=36.43 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=30.0
Q ss_pred cchhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 119 KSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 119 ~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
-+++.+...|....+..||++++.+||..|++.
T Consensus 74 ~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 74 VFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 478889999999999999999999999999864
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=66.12 E-value=7.1 Score=43.28 Aligned_cols=71 Identities=10% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q psy11212 340 LIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRL 419 (448)
Q Consensus 340 L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~t 419 (448)
+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++..-..--+.|+..
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~------~------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N------S------SMSAQATLGLKELCRDCQLQLKPYADPLLNA 588 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H------S------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C------h------HHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 444566666666655 68889999999887 2 2 3699999999999998775433334567777
Q ss_pred HHHHhcCCC
Q psy11212 420 LSNAINDPK 428 (448)
Q Consensus 420 l~k~l~d~~ 428 (448)
|.+.+..+.
T Consensus 589 l~~~l~~~~ 597 (971)
T 2x1g_F 589 CHASLNTGR 597 (971)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHcCCC
Confidence 777777643
No 83
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=66.08 E-value=2.7 Score=47.99 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcc-hHHHHHHHHHHHHHHHHhcCCCcchH
Q psy11212 335 NNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNH-WALRDFASRLLTQVSKNFNTSTNNIQ 413 (448)
Q Consensus 335 ~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~h-w~LRd~AA~lL~~I~~~~~~sy~~L~ 413 (448)
.++ +-..+|.+++.+.-...+.+..--. ..|+.+++.- | .+++ .++|+.||.+|+-+++. +. +....
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-L-----~D~q~~EVRe~Aa~tLsgll~c-~~-~~~~~ 881 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-L-----YNEQFVEVRVRAASILSDIVHN-WK-EEQPL 881 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-T-----TCSSCHHHHHHHHHHHHHHHHS-CC-SHHHH
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-h-----cCCccHHHHHHHHHHHHHHHHc-CC-chhhH
Confidence 466 6666777788777766666665433 3455555431 1 3677 89999999999999744 20 11222
Q ss_pred HHHHHHHHHHhcCC----------CCCccchhhhhhhhccc
Q psy11212 414 TRVTRLLSNAINDP----------KINFPSLYGAIAGEGLV 444 (448)
Q Consensus 414 ~RI~~tl~k~l~d~----------~~~l~t~YGAl~GL~al 444 (448)
..++..|.+.+... .++.....|||.||+|+
T Consensus 882 ~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 882 LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 24555555544320 12346889999999986
No 84
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=64.37 E-value=9.5 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHhcC-CCCccHHHHHHhHHhHHHHHHhhccc
Q psy11212 5 GTSFSIESMKVIAESIG-IPNLPDDAAKELSDNITYCCKVIIQP 47 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~~-~~~~~~~~~k~m~~d~~~~l~~~~ep 47 (448)
|.+||..-+.-+-.+-+ ...|..+|.-+|+.=++|-....+|-
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlel 63 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHH
Confidence 56677766666666654 34577888888888888866665554
No 85
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.09 E-value=22 Score=35.61 Aligned_cols=126 Identities=10% Similarity=0.063 Sum_probs=74.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhh---hcCCC-------cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSL---ATDPG-------LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL---~tD~g-------L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~ 354 (448)
...+.+.+.++++..|..|+..| ..+.. ....+|.++..+..+ .|........+.+..|..++
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-------~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCc
Confidence 33444455556666666555444 33222 124677777776532 35666666666677776665
Q ss_pred CcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhcCC
Q psy11212 355 SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNI-QTRVTRLLSNAINDP 427 (448)
Q Consensus 355 ~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L-~~RI~~tl~k~l~d~ 427 (448)
...-...-...+|.++.++-. ++..+|..|+..|..+|....+.-..+ +..++..|.+.|.++
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGS----------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred hhHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 422222233578887777522 235899999999999998754322222 355677888888765
No 86
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=63.93 E-value=16 Score=38.59 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=74.4
Q ss_pred HHHHhcCCCHHHHHHH---HHhhhcCCC-------cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcc
Q psy11212 288 ITEACVGSDEGRRFEA---LQSLATDPG-------LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLY 357 (448)
Q Consensus 288 It~al~~~~e~~r~~a---L~sL~tD~g-------L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~ 357 (448)
+++.+.+.++..|..| |..|..+.. ....+|.++..+.++ .+........+.+..|..++...
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-------~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhH
Confidence 3334444555555543 344555443 124577777777532 35555556666666777665533
Q ss_pred cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhcCC
Q psy11212 358 LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNI-QTRVTRLLSNAINDP 427 (448)
Q Consensus 358 iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L-~~RI~~tl~k~l~d~ 427 (448)
...+-...+|.++.++-. ....+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 92 ~~i~~~g~i~~Lv~lL~~----------~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGS----------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHTTTHHHHHHHHTTC----------SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHcCCHHHHHHHHhC----------CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 333445678888777622 235899999999999998754322222 345677888888765
No 87
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=63.72 E-value=23 Score=36.30 Aligned_cols=102 Identities=12% Similarity=0.215 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhh------cCCCccc-----chhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc-
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLA------TDPGLHE-----MLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD- 352 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~------tD~gL~q-----LlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~- 352 (448)
.+++++.+.++|.+.+..|...+| .+|-++. .+|.|++|+... .+..+...-...+.-|..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-------~~~~lq~~Aa~aL~nias~ 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-------DCSPIQFESAWALTNIASG 131 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-------TCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-------CCHHHHHHHHHHHHHHhcC
Confidence 467889999999887766665544 4565544 489999998532 223222222222222322
Q ss_pred CCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy11212 353 NQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSK 403 (448)
Q Consensus 353 N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~ 403 (448)
|+.-.-.--=+-.+|.++.++-+ .+..+|+.|+..|+.|+.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s----------~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLAS----------PHAHISEQAVWALGNIAG 172 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHHh
Confidence 11111001112468888877622 234799999999998874
No 88
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=62.13 E-value=18 Score=39.46 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhh---cCCC-------cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLA---TDPG-------LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQ 354 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~---tD~g-------L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~ 354 (448)
...++..+.+.+...|..|+..|. .+.. ....+|.++.++.++ .|...-....+.+..|..++
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-------~d~~vr~~Aa~aL~~Ls~~~ 224 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTSGTLHNLSHHR 224 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhCCc
Confidence 444555555667777776655544 3221 224677777777533 24555555555666665554
Q ss_pred CcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhcCC
Q psy11212 355 SLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNI-QTRVTRLLSNAINDP 427 (448)
Q Consensus 355 ~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L-~~RI~~tl~k~l~d~ 427 (448)
.-.-.-.-...+|.++.++-. .+-.+|..|+.+|..||..+...-..+ ...++..|.+.|.++
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~----------~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGS----------PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred hhHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 321111223577877777622 235899999999999998764422222 234666778888764
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=62.08 E-value=62 Score=36.27 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=72.1
Q ss_pred cccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc----CCCc--ccccchhhHHHHHHHHhhccccCC----CC
Q psy11212 313 LHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD----NQSL--YLEKYLHELLPSILSCIVSKQLCG----RP 382 (448)
Q Consensus 313 L~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~----N~~l--~iepYlHqLlp~lLtCll~k~l~~----~~ 382 (448)
..+.+..++.++..-.. . .+..+-...+.+...+.. .+.. ...+|+.+|++.++..+.-+.-.. .+
T Consensus 338 ~~~~l~~~l~~ll~~~~--~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~ 413 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSK--I--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDE 413 (1049)
T ss_dssp GHHHHHHHHHHHHHHHT--S--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTT
T ss_pred hHHHHHHHHHHHHHHHc--C--CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC
Confidence 44444445555543221 1 244433334444444444 3332 456788888887776653321000 00
Q ss_pred --------CCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 383 --------EADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 383 --------~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+..+.|.+|..++.+|..++..++. .+-+-+...+.+.+.++..+....-+|+.+++++..
T Consensus 414 ~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 414 GEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp SCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred CcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 0124689999999999999977653 344556666666665444566778888888888753
No 90
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.89 E-value=10 Score=38.52 Aligned_cols=140 Identities=17% Similarity=0.122 Sum_probs=81.5
Q ss_pred HHHHHhcCCCHHHHHHHH---HhhhcCCC-c------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCc
Q psy11212 287 EITEACVGSDEGRRFEAL---QSLATDPG-L------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSL 356 (448)
Q Consensus 287 ~It~al~~~~e~~r~~aL---~sL~tD~g-L------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l 356 (448)
.+...+.+.+...|..|+ ..|..+.. . +..+|.++..+.+ ..+.......+..+..|..+..-
T Consensus 164 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-------~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 164 IFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE-------HTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT-------TCCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHcCCCC
Confidence 345555556666666544 44443321 1 1345555555421 14677777788888888887533
Q ss_pred ccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcCCCCCccchh
Q psy11212 357 YLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST-NNIQTRVTRLLSNAINDPKINFPSLY 435 (448)
Q Consensus 357 ~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy-~~L~~RI~~tl~k~l~d~~~~l~t~Y 435 (448)
.-.......+|.++.++- ...+.+|..|+..|+.++..-.... .-+...++..|.+.|.++. .....
T Consensus 237 ~~~~~~~~~l~~L~~lL~----------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~ 304 (528)
T 4b8j_A 237 PSFEQTRPALPALARLIH----------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--PSVLI 304 (528)
T ss_dssp CCHHHHTTHHHHHHHHTT----------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC--hhHHH
Confidence 334456788888877762 2357899999999999884311110 0112235567777777653 34555
Q ss_pred hhhhhhcccC
Q psy11212 436 GAIAGEGLVT 445 (448)
Q Consensus 436 GAl~GL~alG 445 (448)
-|+..|..|.
T Consensus 305 ~a~~~L~nl~ 314 (528)
T 4b8j_A 305 PALRTVGNIV 314 (528)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 91
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=60.79 E-value=13 Score=31.85 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHhc-CCCCccHHHHHHhHHhHHHHHHhhccc
Q psy11212 5 GTSFSIESMKVIAESI-GIPNLPDDAAKELSDNITYCCKVIIQP 47 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~-~~~~~~~~~~k~m~~d~~~~l~~~~ep 47 (448)
|.+||..-+.-+-.+- ....|..+|.-+|+.=++|-....+|-
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlel 64 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLEL 64 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 5667776666666654 455688889999988888876665554
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=60.68 E-value=48 Score=30.79 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCcc------cccchhhHHHHHHHHhhccccCCC--------------------CC----
Q psy11212 334 QNNLALLIYLMRMVKALLDNQSLY------LEKYLHELLPSILSCIVSKQLCGR--------------------PE---- 383 (448)
Q Consensus 334 ~~nl~~L~~ll~~v~ALl~N~~l~------iepYlHqLlp~lLtCll~k~l~~~--------------------~~---- 383 (448)
..|.......+.++.+++.+-... ...++..++|.++ .|-++.. +.
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lv----eK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~ 141 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLV----EKGLTSSRATTKTQSMSCILSLCGLDTSITQSV 141 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHH----HHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH----HHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 357777777888888888754332 2334444555444 3322110 00
Q ss_pred -------CCcchHHHHHHHHHHHHHHHHhcCCCcchH---HHHHHHHHHHhcCCC
Q psy11212 384 -------ADNHWALRDFASRLLTQVSKNFNTSTNNIQ---TRVTRLLSNAINDPK 428 (448)
Q Consensus 384 -------~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~---~RI~~tl~k~l~d~~ 428 (448)
....+.+|..+...|..++..||...-..+ +.++..+.+.|.|++
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~ 196 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGD 196 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCc
Confidence 124688999999999999999998765544 357777888888775
No 93
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=58.75 E-value=35 Score=35.04 Aligned_cols=102 Identities=13% Similarity=0.212 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhh------cCCCcc-----cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLA------TDPGLH-----EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN 353 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~------tD~gL~-----qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N 353 (448)
.+++++.+.++|.+.+..|+..+| .+|-++ .++|.|++|+... .+..+.......+..|..+
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-------~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-------DCSPIQFESAWALTNIASG 150 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHcC
Confidence 567788888888887777766554 344443 4589999998533 2333333334444444444
Q ss_pred CCcc-cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy11212 354 QSLY-LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSK 403 (448)
Q Consensus 354 ~~l~-iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~ 403 (448)
..-+ -...-+..+|.++.++-+ .+-.+|+.|+..|+.|+.
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s----------~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLAS----------PHAHISEQAVWALGNIAG 191 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhc
Confidence 3322 112223577887776522 234789999999998874
No 94
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=54.31 E-value=6.2 Score=34.63 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=30.6
Q ss_pred cchhhhhhhhhhhh-cccCCccCChhHHHHHHHhc
Q psy11212 119 KSAQKLESISFKCM-SHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 119 ~~~q~l~~~A~Kfm-~hskR~kLt~~DIn~AL~~~ 152 (448)
-|++.+...|...+ +..||++|+.+||..|++..
T Consensus 52 lFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 52 LFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 47888999999999 99999999999999999853
No 95
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=54.04 E-value=15 Score=31.88 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHhc-CCCCccHHHHHHhHHhHHHHHHhhccc
Q psy11212 5 GTSFSIESMKVIAESI-GIPNLPDDAAKELSDNITYCCKVIIQP 47 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~-~~~~~~~~~~k~m~~d~~~~l~~~~ep 47 (448)
|.+||..-+.-+-.+- ....|..+|.-+|+.=++|-....+|-
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlel 66 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILEL 66 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 5567766666555554 445577888888888888866665554
No 96
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=53.75 E-value=19 Score=31.02 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHhc-CCCCccHHHHHHhHHhHHHHHHhhccc
Q psy11212 5 GTSFSIESMKVIAESI-GIPNLPDDAAKELSDNITYCCKVIIQP 47 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~-~~~~~~~~~~k~m~~d~~~~l~~~~ep 47 (448)
|.+||..-+.-+-.+- ....|..+|.-+|+.=++|-....+|-
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlel 66 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 5567766666666654 445678888888888888866654444
No 97
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=52.86 E-value=18 Score=32.07 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=22.2
Q ss_pred hhhhhcccCCccCChhHHHHHHHh
Q psy11212 128 SFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 128 A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
|....++.+|+++++.||..|.+.
T Consensus 86 Agn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 86 AGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHhcCCCcCcHHHHHHHHhc
Confidence 888899999999999999999884
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=52.10 E-value=43 Score=32.20 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred HHHhcCCCHHHHHHHHHhhhcC----C-CcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc---CCCccccc
Q psy11212 289 TEACVGSDEGRRFEALQSLATD----P-GLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD---NQSLYLEK 360 (448)
Q Consensus 289 t~al~~~~e~~r~~aL~sL~tD----~-gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~---N~~l~iep 360 (448)
...+.+.|-..|.+|++.|..+ + .+..-+=-++.|++-.+. .+|..++...+.++.+|+. -..-.+..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~----d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF----ETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT----SCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 3444456666677666655542 2 111112223555543222 2465555555555555532 13344555
Q ss_pred c-hhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhh
Q psy11212 361 Y-LHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAI 438 (448)
Q Consensus 361 Y-lHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl 438 (448)
| .-.++|.++.-+ |. ..=.+|+.+-.+|..++.-|+.+ ++...+...|. .++.-+.=|.+
T Consensus 128 ~ea~~~lP~LveKl-----Gd-----~k~~vR~~~r~il~~l~~v~~~~------~v~~~l~~g~k--sKN~R~R~e~l 188 (266)
T 2of3_A 128 EEVSAFVPYLLLKT-----GE-----AKDNMRTSVRDIVNVLSDVVGPL------KMTPMLLDALK--SKNARQRSECL 188 (266)
T ss_dssp HHHHHHHHHHHHGG-----GC-----SSHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHGGG--CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CC-----ChHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHc--cCCHHHHHHHH
Confidence 5 456677655443 22 22268999988888888776542 35555666664 34444444443
No 99
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=51.34 E-value=7.7 Score=35.62 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=27.7
Q ss_pred hhhhhhhhhhhcccCCccCChhHHHHHHHhc
Q psy11212 122 QKLESISFKCMSHSKRVKLLPVDIDDALNMK 152 (448)
Q Consensus 122 q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ 152 (448)
.++-.+|.+++++.||+++|..||..|.+..
T Consensus 39 ~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 39 ERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 4677789999999999999999999999954
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=50.33 E-value=1.1e+02 Score=34.82 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCHH-HHH--HHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCc--ccc
Q psy11212 285 YKEITEACVGSDEG-RRF--EALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSL--YLE 359 (448)
Q Consensus 285 f~~It~al~~~~e~-~r~--~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l--~ie 359 (448)
++...+++.-++.. .+. .++.++-...+....+|+ . +.+.+...+..++.. ..-|-.+.+|...... ..|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE--H-FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH--H-HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccccccch--h-HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 44444455443222 233 346776565555667774 3 334444444333333 6677788899854443 689
Q ss_pred cchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy11212 360 KYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIA 439 (448)
Q Consensus 360 pYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~ 439 (448)
||+-.++|.++.+.-.| .=.+|+-|...+..|+..+.. ..+ ..+...+.+.|.... -..+.-||+.
T Consensus 91 ~~~~~~~~~~~~~~~dk----------~~~v~~aa~~~~~~~~~~~~~--~a~-~~~~~~~~~~~~~~~-kw~~k~~~l~ 156 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNK----------DKEIQSVASETLISIVNAVNP--VAI-KALLPHLTNAIVETN-KWQEKIAILA 156 (986)
T ss_dssp HHHHTTHHHHHHHTTCS----------SHHHHHHHHHHHHHHHHHSCG--GGH-HHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHHHhCCH--HHH-HHHHHHHHHHhcccc-chHHHHHHHH
Confidence 99999999998887333 227899999999999998875 334 777888888885443 3888899988
Q ss_pred hhccc
Q psy11212 440 GEGLV 444 (448)
Q Consensus 440 GL~al 444 (448)
.|..|
T Consensus 157 ~~~~~ 161 (986)
T 2iw3_A 157 AFSAM 161 (986)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 101
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=49.54 E-value=25 Score=30.29 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=22.2
Q ss_pred hhhhhcccCCccCChhHHHHHHHh
Q psy11212 128 SFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 128 A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
|....+|.+|+++|+.||..|.+.
T Consensus 70 Agn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 70 AGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEcHHHHHHHHhc
Confidence 888899999999999999999874
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=46.20 E-value=42 Score=38.13 Aligned_cols=151 Identities=9% Similarity=0.069 Sum_probs=77.5
Q ss_pred ccchHHH-HHHHHHHHHHhcCC--CHHHHHHHHHhhhc---CCC---cccchhhHHHHHHhhhhhccccCCH-H-----H
Q psy11212 275 HELSVEQ-QLYYKEITEACVGS--DEGRRFEALQSLAT---DPG---LHEMLPRMCTFIAEGVKVNVVQNNL-A-----L 339 (448)
Q Consensus 275 h~LSkEl-Qlyf~~It~al~~~--~e~~r~~aL~sL~t---D~g---L~qLlPyfv~FI~e~V~~nl~~~nl-~-----~ 339 (448)
+.+..+. +.++.++.+.+.++ +=..|++++-++.. -+. ...+||-++.++-+-... ...++- . .
T Consensus 442 ~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~-~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 442 HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVK-KRGKDNKAVVASDI 520 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH-CCSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhc-cccCcchHHHHHHH
Confidence 3444454 34566677777653 33456666554444 111 233444444444322111 000111 1 1
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCc--------c
Q psy11212 340 LIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTN--------N 411 (448)
Q Consensus 340 L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~--------~ 411 (448)
+..+-|..+=+-.|+ ++++++|+.++..- .++|-.+.+.|+..+..||.+|+.... .
T Consensus 521 ~~~lGry~~wl~~~~---------~~L~~vl~~L~~~l------~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHW---------NFLRTVILKLFEFM------HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp HHHHHTCHHHHHHCH---------HHHHHHHHHHHHHT------TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred HHHHHHHHHHHhccH---------HHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 223334455454443 34666666655532 134557999999999999999885331 1
Q ss_pred hHHHHHHHHHHHhcCC-CCCccchhhhhhhh
Q psy11212 412 IQTRVTRLLSNAINDP-KINFPSLYGAIAGE 441 (448)
Q Consensus 412 L~~RI~~tl~k~l~d~-~~~l~t~YGAl~GL 441 (448)
.-..|.+.+.+++.+- .......|.||.-+
T Consensus 586 ~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 586 FIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455777777777532 13344566665543
No 103
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=45.09 E-value=92 Score=31.01 Aligned_cols=138 Identities=13% Similarity=0.064 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH---HhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCC
Q psy11212 279 VEQQLYYKEITEACVGSDEGRRFEAL---QSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQS 355 (448)
Q Consensus 279 kElQlyf~~It~al~~~~e~~r~~aL---~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~ 355 (448)
.|.-..|-.++..+.+.|...|+-++ ..+...+ +..+ -.++.+..... ..|-..=..-+|..-.+..-
T Consensus 64 ~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~--~e~i-Lv~Nsl~kDl~----~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 64 TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA--EDVI-IVTSSLTKDMT----GKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp HHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS--SCGG-GGHHHHHHHHH----SSCHHHHHHHHHHHHHHCCT--
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH--HHHH-HHHHHHHhhcC----CCcHhHHHHHHHHHhcCCCH--
Confidence 46666777788888888877766544 3343332 2222 33444444433 34543322345555444333
Q ss_pred cccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchh
Q psy11212 356 LYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLY 435 (448)
Q Consensus 356 l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~Y 435 (448)
..+..+.+.+-.|+..+ |=.+|..|+-...+++.. .+.+-.|.+..+...+.|. +..+.|
T Consensus 135 ----~m~~~l~~~lk~~L~d~----------~pyVRk~A~l~~~kL~~~----~pe~v~~~~~~l~~ll~d~--n~~V~~ 194 (355)
T 3tjz_B 135 ----TMLQAIERYMKQAIVDK----------VPSVSSSALVSSLHLLKC----SFDVVKRWVNEAQEAASSD--NIMVQY 194 (355)
T ss_dssp ----TTHHHHHHHHHHHHTCS----------SHHHHHHHHHHHHHHTTT----CHHHHHTTHHHHHHHTTCS--SHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHhcCC--CccHHH
Confidence 34667788888888553 348999999998877654 4777778888898888764 567788
Q ss_pred hhhhhhcccC
Q psy11212 436 GAIAGEGLVT 445 (448)
Q Consensus 436 GAl~GL~alG 445 (448)
.|+.-|..+.
T Consensus 195 ~Al~lL~ei~ 204 (355)
T 3tjz_B 195 HALGLLYHVR 204 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776543
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=43.82 E-value=9.2 Score=31.51 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccCC
Q psy11212 385 DNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVTE 446 (448)
Q Consensus 385 ~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG~ 446 (448)
+.+|.+|..|+..|+.+.. ++....|.+.|.|+ +....+.|+.+|..+|.
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 3568999999999998753 35677777777765 56789999999988875
No 105
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=39.91 E-value=67 Score=35.15 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=65.6
Q ss_pred cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHH
Q psy11212 315 EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFA 394 (448)
Q Consensus 315 qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~A 394 (448)
.+++.+..++.+.+...-...++......+..+.++...-.-...+++.++++.++ .++. +|-.+|..+
T Consensus 441 ~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~------~l~~-----~~~~vr~~~ 509 (963)
T 2x19_B 441 ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP------RISI-----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG------GSCC-----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH------hCCC-----CcHHHHHHH
Confidence 46677777776665321123578888888888888887765556677777777322 2322 466899999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q psy11212 395 SRLLTQVSKNFNTSTNNIQTRVTRLLSNAIND 426 (448)
Q Consensus 395 A~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d 426 (448)
..++++.++-+... +..-+.++..+.+.|.+
T Consensus 510 ~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~ 540 (963)
T 2x19_B 510 MFTIGALSEWLADH-PVMINSVLPLVLHALGN 540 (963)
T ss_dssp HHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC
Confidence 99999998765532 34445566666666654
No 106
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=39.83 E-value=2.4e+02 Score=27.71 Aligned_cols=109 Identities=11% Similarity=-0.038 Sum_probs=63.1
Q ss_pred chhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHH
Q psy11212 316 MLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFAS 395 (448)
Q Consensus 316 LlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA 395 (448)
.+|.|+.++.+. .+-.......+++..|..++...-..--+..+|.++.++-. .+-.+|..|+
T Consensus 186 ~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~----------~~~~~~~~a~ 248 (529)
T 1jdh_A 186 GPQALVNIMRTY-------TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----------PSQRLVQNCL 248 (529)
T ss_dssp HHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS----------SCHHHHHHHH
T ss_pred CHHHHHHHHHhC-------ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC----------CChHHHHHHH
Confidence 467777776543 23344445666666677666542211123566666655521 2357899999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhcccC
Q psy11212 396 RLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLVT 445 (448)
Q Consensus 396 ~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG 445 (448)
.+|..+|+.... .... ..++..|.+.|.++ ......-|...|..|+
T Consensus 249 ~~L~~l~~~~~~-~~~~-~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 249 WTLRNLSDAATK-QEGM-EGLLGTLVQLLGSD--DINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHHHHHTTCTT-CSCC-HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCChh-hHHH-HhHHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 999999976433 2222 35677777777643 3445555555555544
No 107
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=39.63 E-value=8.5 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=33.4
Q ss_pred cCCCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHH
Q psy11212 4 YGTSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCK 42 (448)
Q Consensus 4 ~~~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~ 42 (448)
++..+++++...|+|-+ =+.++.+||..|- .+||..|++
T Consensus 20 g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 20 GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 45689999999999998 3788999999987 589999886
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=39.20 E-value=1.7e+02 Score=30.37 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=51.4
Q ss_pred hcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHh-cCCCcccccchhhHHHHHH
Q psy11212 292 CVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALL-DNQSLYLEKYLHELLPSIL 370 (448)
Q Consensus 292 l~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl-~N~~l~iepYlHqLlp~lL 370 (448)
+.+.++..|..||..|..- +...+.++++.-+... +...|..+=..-...+..+. .+|.+--+ ..++|.+.
T Consensus 95 L~~~n~~ir~~AL~~L~~i-~~~~~~~~l~~~l~~~----L~d~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~~~l~ 166 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCI-RVDKITEYLCEPLRKC----LKDEDPYVRKTAAVCVAKLHDINAQMVED---QGFLDSLR 166 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTC-CSGGGHHHHHHHHHHH----SSCSCHHHHHHHHHHHHHHHHSSCCCHHH---HHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHH----cCCCChHHHHHHHHHHHHHHhhChhhccc---ccHHHHHH
Confidence 4456778899999888764 3455666655544433 33344433222221222222 45553211 24666665
Q ss_pred HHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHh
Q psy11212 371 SCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNF 405 (448)
Q Consensus 371 tCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~ 405 (448)
.++- +.+..+|..|+..|..||..-
T Consensus 167 ~lL~----------d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 167 DLIA----------DSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HTTS----------CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHhC----------CCChhHHHHHHHHHHHHHhhC
Confidence 5551 233467777777777777653
No 109
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=38.71 E-value=64 Score=35.74 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHhhhcCCCcccchhhHHHHHHhhhhhcc--ccCCHHHHHHHHHHHHHHhcC------------CCcccccchhh-HHH
Q psy11212 303 ALQSLATDPGLHEMLPRMCTFIAEGVKVNV--VQNNLALLIYLMRMVKALLDN------------QSLYLEKYLHE-LLP 367 (448)
Q Consensus 303 aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl--~~~nl~~L~~ll~~v~ALl~N------------~~l~iepYlHq-Llp 367 (448)
.|..|...-| ..++|-+..|+.+.+...- ...|+..-...+.++.|+..+ +.+.+++++.+ ++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 3444444444 5667777777665544210 024677777788888888654 22245555432 333
Q ss_pred HHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccchhhhhhhhccc
Q psy11212 368 SILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 368 ~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~al 444 (448)
- +-. +. ..|-.+|..|..+|++++..+. +..-..++..+.+.|.|+ +...+--|..+|..|
T Consensus 463 ~----l~~------~~-~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 463 D----LTS------NN-IPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKI 523 (960)
T ss_dssp H----HHC------SS-CSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred H----hcC------CC-CCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHH
Confidence 2 211 11 2477899999999999887762 456777888888888876 455556666665553
No 110
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=38.29 E-value=1.7e+02 Score=31.79 Aligned_cols=93 Identities=13% Similarity=-0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q psy11212 339 LLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTR 418 (448)
Q Consensus 339 ~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~ 418 (448)
......+++..|..++...-...-...+|.++.++-. .+-.+|..|+.+|..+|+..... .....++.
T Consensus 335 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~----------~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~ 402 (780)
T 2z6g_A 335 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD----------PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLG 402 (780)
T ss_dssp HHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC----------SCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcC----------CchHHHHHHHHHHHHHhccchhh--hhhhhHHH
Confidence 3344455666666555432222223456666655521 13468999999999998765432 12345777
Q ss_pred HHHHHhcCCCCCccchhhhhhhhcccC
Q psy11212 419 LLSNAINDPKINFPSLYGAIAGEGLVT 445 (448)
Q Consensus 419 tl~k~l~d~~~~l~t~YGAl~GL~alG 445 (448)
.|.+.|.++ ......-|+..|..|+
T Consensus 403 ~Lv~lL~~~--d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 403 TLVQLLGSD--DINVVTCAAGILSNLT 427 (780)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 777777643 4455666666666554
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=37.04 E-value=1.1e+02 Score=33.76 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHhhhcCCCcccchhhHHHHHHhhhhhcc-ccCCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCC
Q psy11212 303 ALQSLATDPGLHEMLPRMCTFIAEGVKVNV-VQNNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGR 381 (448)
Q Consensus 303 aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl-~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~ 381 (448)
+|..+..--| ..+++.+..|+.+.+...- ...++......+..+.|+.....-...+++.++++ ++..+..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~------ 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY------ 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT------
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc------
Confidence 3444444444 5677788888776654310 01466777778888888877666555678888877 4433311
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q psy11212 382 PEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAI 424 (448)
Q Consensus 382 ~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l 424 (448)
+ +.|-.+|..|..+|+.++.-+... +..-+.++..+.+.|
T Consensus 516 ~--d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 516 E--KLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL 555 (971)
T ss_dssp T--TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH
T ss_pred c--ccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh
Confidence 0 236689999999999999877753 456667888888877
No 112
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=36.67 E-value=46 Score=30.34 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=21.7
Q ss_pred hhhhhcccCCccCChhHHHHHHH
Q psy11212 128 SFKCMSHSKRVKLLPVDIDDALN 150 (448)
Q Consensus 128 A~Kfm~hskR~kLt~~DIn~AL~ 150 (448)
|.+..+|.||+++++.||..|.+
T Consensus 148 A~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 148 AGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHh
Confidence 88888999999999999999987
No 113
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=35.24 E-value=1.1e+02 Score=32.61 Aligned_cols=148 Identities=9% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHHhcCCCHHHHHH---HHHhhhcC--CCc------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCc
Q psy11212 288 ITEACVGSDEGRRFE---ALQSLATD--PGL------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSL 356 (448)
Q Consensus 288 It~al~~~~e~~r~~---aL~sL~tD--~gL------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l 356 (448)
+++.+.+.++..+.. ||..|... +.- +.-+|.|+.++... .+.............|..|+..
T Consensus 95 LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~-------~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 95 LVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA-------RDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC-------CSHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhCCchh
Confidence 344445555555544 44444442 111 24578889988753 2444445555566666666655
Q ss_pred ccccchhhHHHHHHHHhhccccCCC--------CCCCcchHHHHHHHHHHHHHHHHhcC------CCcchHHHHHHHHHH
Q psy11212 357 YLEKYLHELLPSILSCIVSKQLCGR--------PEADNHWALRDFASRLLTQVSKNFNT------STNNIQTRVTRLLSN 422 (448)
Q Consensus 357 ~iepYlHqLlp~lLtCll~k~l~~~--------~~~~~hw~LRd~AA~lL~~I~~~~~~------sy~~L~~RI~~tl~k 422 (448)
...-- ..-+|+++..++.+..+.. ....+.-.+++.|+.+|..++....+ ...++.+-++..+..
T Consensus 168 k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 43322 4557877766643322211 00112348899999999998743211 124455555555555
Q ss_pred HhcCCCCCccchhhhhhhhcc
Q psy11212 423 AINDPKINFPSLYGAIAGEGL 443 (448)
Q Consensus 423 ~l~d~~~~l~t~YGAl~GL~a 443 (448)
.+.+........=-|++.|..
T Consensus 247 ~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHHHHHH
Confidence 543333333344444444433
No 114
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=35.09 E-value=85 Score=35.38 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy11212 364 ELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAIN 425 (448)
Q Consensus 364 qLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~ 425 (448)
+.+|++|..++...--. +.+-.+|..|+.++.++|+.++..-..--..|+..+...|.
T Consensus 531 ~~l~~~L~~ll~~~gl~----~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIH----NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp TTHHHHHHHHTSTTTTT----CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred hhHHHHHHHHhcccccc----CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 56777777776632222 12337899999999999999997655555668888877666
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=34.08 E-value=1.4e+02 Score=33.43 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHhhhcCCC------cccchhhHHHHHHhhhhhccccC-CHHH-----HHHHHHHHH
Q psy11212 283 LYYKEITEACVG--SDEGRRFEALQSLATDPG------LHEMLPRMCTFIAEGVKVNVVQN-NLAL-----LIYLMRMVK 348 (448)
Q Consensus 283 lyf~~It~al~~--~~e~~r~~aL~sL~tD~g------L~qLlPyfv~FI~e~V~~nl~~~-nl~~-----L~~ll~~v~ 348 (448)
..+..+.+.+.+ .+-..|++++-.+..=++ -..++|.++.++.. +......+ +-.. +..+-|+.+
T Consensus 451 ~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~ 529 (1049)
T 3m1i_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPR 529 (1049)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHH
Confidence 334555555544 233456777766654322 12356666666653 11111000 1111 222334443
Q ss_pred HHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCc--------chHHHHHHHH
Q psy11212 349 ALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTN--------NIQTRVTRLL 420 (448)
Q Consensus 349 ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~--------~L~~RI~~tl 420 (448)
-+-.|+ .|+..+++.++.++- +.+-.+|..||..+..+|..++...- ..-+.|++.|
T Consensus 530 ~~~~~~-----~~l~~vl~~ll~~l~----------~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 530 FLKAHW-----NFLRTVILKLFEFMH----------ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHCH-----HHHHHHHHHHHHHTT----------SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHhHH-----HHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 344443 466666666666541 23568999999999999999874321 2245677777
Q ss_pred HHHhcCCC-CCccchhhhhhhh
Q psy11212 421 SNAINDPK-INFPSLYGAIAGE 441 (448)
Q Consensus 421 ~k~l~d~~-~~l~t~YGAl~GL 441 (448)
.+++.+.. ......|-|+.-+
T Consensus 595 ~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 595 QKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 77766422 1233445554443
No 116
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=32.45 E-value=2.4e+02 Score=27.06 Aligned_cols=137 Identities=14% Similarity=0.083 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhc---C-------CCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcC
Q psy11212 284 YYKEITEACVGSDEGRRFEALQSLAT---D-------PGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDN 353 (448)
Q Consensus 284 yf~~It~al~~~~e~~r~~aL~sL~t---D-------~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N 353 (448)
++.-+.+-+-..|+..+..+|.-|+. + .-+.-++|-++.- +.++|-.+...-||+.+.|+.|
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l--------lk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA--------LSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------CCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH--------HhccchhHHHHHHHHHHHHHcC
Confidence 45556666666676666555544332 1 1133344443321 2346777888899999999999
Q ss_pred CCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCCCCCccc
Q psy11212 354 QSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDPKINFPS 433 (448)
Q Consensus 354 ~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~~~~l~t 433 (448)
-.+.=+.|.- ++-++...+ .+ .+ =-+|.+||..++.+ +-..+-++|.+.+.+.+ ..+....
T Consensus 106 vpL~~~~y~K-l~~aL~dli-k~---~~------~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl--~Skd~~v 166 (265)
T 3b2a_A 106 VPMGSKTFLK-AAKTLVSLL-ES---PD------DMMRIETIDVLSKL------QPLEDSKLVRTYINELV--VSPDLYT 166 (265)
T ss_dssp CCBCHHHHHH-HHHHHHHHT-TS---CC------HHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHH--TCSSHHH
T ss_pred CCCCHHHHHH-HHHHHHHHh-cC---CC------chHHHHHHHHhCcC------CcccchHHHHHHHHHHH--hCCChhH
Confidence 9998777753 333323322 21 11 16999999999998 33455677888777777 4556777
Q ss_pred hhhhhhhhcccCCC
Q psy11212 434 LYGAIAGEGLVTER 447 (448)
Q Consensus 434 ~YGAl~GL~alG~~ 447 (448)
.=-|++.|.+++.+
T Consensus 167 K~agl~~L~eia~~ 180 (265)
T 3b2a_A 167 KVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhcc
Confidence 77777777666554
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.31 E-value=1.1e+02 Score=29.02 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhc-CCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q psy11212 338 ALLIYLMRMVKALLD-NQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTRV 416 (448)
Q Consensus 338 ~~L~~ll~~v~ALl~-N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~RI 416 (448)
..+..|-++-+=+++ ||. ++.++++.++..... ..-.+|.+-+.+++.+|++ .+.+-+++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-----ll~~~l~~il~~~~~----------~~~~vrk~~~~Fi~e~~~~----k~~l~~~~ 91 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-----LAEEFLESVLSLAHD----------SNMEVRKQVVAFVEQVCKV----KVELLPHV 91 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-----GHHHHHHHHHGGGGC----------SCHHHHHHHHHHHHHHHHH----CGGGHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-----HHHHHHHHHHHhccC----------ChHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 555555555552333 443 445666666653211 2358999999999999977 47899999
Q ss_pred HHHHHHHhcCC
Q psy11212 417 TRLLSNAINDP 427 (448)
Q Consensus 417 ~~tl~k~l~d~ 427 (448)
+.+|...+.|+
T Consensus 92 l~~L~~Ll~d~ 102 (257)
T 3gs3_A 92 INVVSMLLRDN 102 (257)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHHcCC
Confidence 99999999875
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=30.34 E-value=2e+02 Score=32.66 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCccc
Q psy11212 279 VEQQLYYKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYL 358 (448)
Q Consensus 279 kElQlyf~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~i 358 (448)
.+.-.-|.+++..+..-+.+....+++.+... +-.-.++.+.+..- ..-+ -++++.-++.|..+..
T Consensus 307 ~~~~~~f~~Lv~~lR~~~~e~L~~l~~~~~~~-------~~~r~~~lDal~~a---GT~~----a~~~i~~~i~~~~l~~ 372 (1056)
T 1lsh_A 307 EDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQ-------KDYRRWILDAVPAM---ATSE----ALLFLKRTLASEQLTS 372 (1056)
T ss_dssp TTHHHHHHHHHHHHTTSCHHHHHHHHHHHTTS-------HHHHHHHHHHHHHH---CSHH----HHHHHHHHHHTTCSCH
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------HHHHHHHHHHhHhc---CCHH----HHHHHHHHHHcCCCCH
Confidence 33445677788888877777777777776643 22223444444321 2223 2333444456666654
Q ss_pred ccchhhHHHHHHHHh--------hccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhcC
Q psy11212 359 EKYLHELLPSILSCI--------VSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST----NNIQTRVTRLLSNAIND 426 (448)
Q Consensus 359 epYlHqLlp~lLtCl--------l~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy----~~L~~RI~~tl~k~l~d 426 (448)
.-+++-|.- .+..+ ....++..+....+..||+-|.-.++.+.++|.... ..+.+.+.+.|.+++..
T Consensus 373 ~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~ 451 (1056)
T 1lsh_A 373 AEATQIVAS-TLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR 451 (1056)
T ss_dssp HHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc
Confidence 443333321 11100 001122222234677899988888888888876543 34567788888777754
Q ss_pred CCCCccchhhhhhhhcccC
Q psy11212 427 PKINFPSLYGAIAGEGLVT 445 (448)
Q Consensus 427 ~~~~l~t~YGAl~GL~alG 445 (448)
. ......=+|.+|.++|
T Consensus 452 ~--~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 452 A--KEEEIVLALKALGNAG 468 (1056)
T ss_dssp T--CHHHHHHHHHHHHHHT
T ss_pred C--ChHHHHHHHHHhhccC
Confidence 2 3444555566666555
No 119
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=30.11 E-value=19 Score=34.21 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=28.3
Q ss_pred hhhhhhhhhhcccCCccCChhHHHHHHHhcCC
Q psy11212 123 KLESISFKCMSHSKRVKLLPVDIDDALNMKNI 154 (448)
Q Consensus 123 ~l~~~A~Kfm~hskR~kLt~~DIn~AL~~~ni 154 (448)
.+...+-.++.|+||-++++.||..|.+.++.
T Consensus 55 ~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 55 GLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 45567888999999999999999999999875
No 120
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=29.72 E-value=22 Score=28.87 Aligned_cols=41 Identities=5% Similarity=0.050 Sum_probs=35.1
Q ss_pred cCCCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhh
Q psy11212 4 YGTSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVI 44 (448)
Q Consensus 4 ~~~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~ 44 (448)
.|..+|++++..|+|-+ -+.++..|+..|- .+||.-++|+|
T Consensus 29 ~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 29 EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 46789999999999988 4678899999997 58999999874
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=27.83 E-value=2.7e+02 Score=26.87 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCCcc--cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCC-CcchHHH
Q psy11212 339 LLIYLMRMVKALLDNQSLY--LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTS-TNNIQTR 415 (448)
Q Consensus 339 ~L~~ll~~v~ALl~N~~l~--iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~s-y~~L~~R 415 (448)
.....+|++--|..|+.-. +-....+++..+.+|. .+ .+=.+|--+|.++-.+.-...+. ...-+..
T Consensus 164 n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~----~~------~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ 233 (304)
T 3ebb_A 164 NQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELK----SG------SNKNIHIALATLALNYSVCFHKDHNIEGKAQ 233 (304)
T ss_dssp HHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGG----SS------CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHh----cC------CChhHHHHHHHHHHHHHHHHhhcCCchHHHH
Confidence 3455778888888887631 2223344444443332 11 23489999999888776554332 1233555
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhccc
Q psy11212 416 VTRLLSNAINDPKINFPSLYGAIAGEGLV 444 (448)
Q Consensus 416 I~~tl~k~l~d~~~~l~t~YGAl~GL~al 444 (448)
+...+.+++. ......+.|+++++|..|
T Consensus 234 ll~~l~~il~-~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 234 CLSLISTILE-VVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 6666666654 445778999999998654
No 122
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.38 E-value=1.1e+02 Score=31.00 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=74.4
Q ss_pred HHHHhcCCCHHHHHHH---HHhhhcCC-Cc------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcc
Q psy11212 288 ITEACVGSDEGRRFEA---LQSLATDP-GL------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLY 357 (448)
Q Consensus 288 It~al~~~~e~~r~~a---L~sL~tD~-gL------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~ 357 (448)
+++.+.+.+...|..| |..|..|. .. +..+|.++.++...-.. ......+......+..+..|..-.
T Consensus 148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~---~~~~~~~~~a~~~L~nl~~~~~~~ 224 (510)
T 3ul1_B 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS---TLACGYLRNLTWTLSNLCRNKNPA 224 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG---GSCHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccch---hhhHHHHHHHHHHHHHHhhcccch
Confidence 4455556666666544 45555442 21 23466667666532111 123455666666777777776543
Q ss_pred cc-cchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcCCCCCccchh
Q psy11212 358 LE-KYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNN-IQTRVTRLLSNAINDPKINFPSLY 435 (448)
Q Consensus 358 ie-pYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~-L~~RI~~tl~k~l~d~~~~l~t~Y 435 (448)
.. ..+..++|.+..++- .++..+|..|+..|..++......... ....+...|.+.|.++ ....+.
T Consensus 225 ~~~~~~~~~lp~L~~LL~----------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~ 292 (510)
T 3ul1_B 225 PPLDAVEQILPTLVRLLH----------HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVT 292 (510)
T ss_dssp CCHHHHHHHHHHHHHHTT----------CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHH
T ss_pred hHHHHHHhHHHHHHHHHh----------cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--Chhhhh
Confidence 32 345678888777652 133478889999998887532110000 0112333444444433 344555
Q ss_pred hhhhhhccc
Q psy11212 436 GAIAGEGLV 444 (448)
Q Consensus 436 GAl~GL~al 444 (448)
.|+..|..+
T Consensus 293 ~al~aL~nl 301 (510)
T 3ul1_B 293 PALRAIGNI 301 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 123
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=25.38 E-value=44 Score=26.18 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCccHHHHHHhHHhHHHHHHhhcccc
Q psy11212 14 KVIAESIGIPNLPDDAAKELSDNITYCCKVIIQPI 48 (448)
Q Consensus 14 ~~~a~~~~~~~~~~~~~k~m~~d~~~~l~~~~ep~ 48 (448)
..++...||+++.+|+..|+..=...+||..+|-|
T Consensus 13 ~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl 47 (75)
T 1h3o_A 13 LEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKI 47 (75)
T ss_dssp HHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHH
Confidence 45666679999999999999999999999877753
No 124
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.24 E-value=88 Score=31.17 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhcCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcccccchhh
Q psy11212 285 YKEITEACVGSDEGRRFEALQSLATDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYLEKYLHE 364 (448)
Q Consensus 285 f~~It~al~~~~e~~r~~aL~sL~tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~iepYlHq 364 (448)
...+..++.+.++-.|+.|+=+.- .|.+..|-++.-+.+++..-+..+|-.++..-+.+...+-.+.... +..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a----~~k 213 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA----VSK 213 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH----HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH----HHH
Confidence 444667778788887776654333 3555566666555556555555567655555556666665554222 222
Q ss_pred HHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcCCCCCccchhhhhhhhcc
Q psy11212 365 LLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTST-NNIQTRVTRLLSNAINDPKINFPSLYGAIAGEGL 443 (448)
Q Consensus 365 Llp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy-~~L~~RI~~tl~k~l~d~~~~l~t~YGAl~GL~a 443 (448)
|++.+-.| ...+.|..= .+-+++.++.... +....++...+...|. +++-...|.|+..+..
T Consensus 214 Lv~~l~~~----------~l~~~~~q~-----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~--~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 214 MISKFTRH----------GLKSPFAYC-----MMIRVASRQLEDEDGSRDSPLFDFIESCLR--NKHEMVVYEAASAIVN 276 (355)
T ss_dssp HHHHHHSS----------CCSCHHHHH-----HHHHHHTCC-----------------CCCC--CSSHHHHHHHHHHHTC
T ss_pred HHHHHhcC----------CCcChHHHH-----HHHHHHHHhccccchhhHHHHHHHHHHHHc--CCChHHHHHHHHHHHh
Confidence 33321110 122344321 1222333455444 4555666666665554 4466677777777666
Q ss_pred cC
Q psy11212 444 VT 445 (448)
Q Consensus 444 lG 445 (448)
+.
T Consensus 277 l~ 278 (355)
T 3tjz_B 277 LP 278 (355)
T ss_dssp --
T ss_pred cc
Confidence 54
No 125
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=25.02 E-value=31 Score=28.84 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhh
Q psy11212 5 GTSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVI 44 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~ 44 (448)
+..+|.++...+++-+ =+.+++.||..|- .+||..|+|.+
T Consensus 22 ~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 22 KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72 (111)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHC
Confidence 4467777777777766 2456777777765 58999999984
No 126
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=24.44 E-value=25 Score=29.74 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHhc--CCCCccHHHHHHh---------HHhHHHHHHhh
Q psy11212 5 GTSFSIESMKVIAESI--GIPNLPDDAAKEL---------SDNITYCCKVI 44 (448)
Q Consensus 5 ~~~~~~~~~~~~a~~~--~~~~~~~~~~k~m---------~~d~~~~l~~~ 44 (448)
|..+|++++..|+|-+ -+.++..|+..|- .+||.-++|+|
T Consensus 45 ~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 5679999999999988 3668999999997 58999998874
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=23.95 E-value=2.8e+02 Score=31.79 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=52.9
Q ss_pred cCCCcccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCccc----ccchhhHHHHHHHHhhccccCCCCC-
Q psy11212 309 TDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLYL----EKYLHELLPSILSCIVSKQLCGRPE- 383 (448)
Q Consensus 309 tD~gL~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~i----epYlHqLlp~lLtCll~k~l~~~~~- 383 (448)
..+.++++++++..|... .+..+-...+.+-.+++.+..+.. .+|+-+|++.+..|+..-.......
T Consensus 345 ~~~~l~~~l~~lL~~t~~--------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~ 416 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH--------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS 416 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS--------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS
T ss_pred ChhHHHHHHHHHHHHHhC--------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 566677888888887742 244444444555556777654433 3455555555544442222221110
Q ss_pred ---------C-------CcchHHHHHHHHHHHHHHHHhc
Q psy11212 384 ---------A-------DNHWALRDFASRLLTQVSKNFN 406 (448)
Q Consensus 384 ---------~-------~~hw~LRd~AA~lL~~I~~~~~ 406 (448)
. ..-|..|...+.++..+|..+.
T Consensus 417 ~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 417 PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 0 1248899999999999998763
No 128
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=23.78 E-value=96 Score=35.23 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=72.9
Q ss_pred cchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhcCCCcc-cccchhhHHHHHHHHhhccccCCCCCCCcchHHHHH
Q psy11212 315 EMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLDNQSLY-LEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDF 393 (448)
Q Consensus 315 qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~N~~l~-iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~ 393 (448)
.+++.+...+.+.+... ..++..+...+-.+.|+.....-. ..+++++++|.+++++=.++. .++.-.+|+-
T Consensus 447 ~~~~~~~~~l~~~l~~~--~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~-----~d~k~~v~~t 519 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGS--EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG-----KDNKAVVASD 519 (1023)
T ss_dssp HHHHHHHHHHHHHHSST--TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc-----CcchHHHHHH
Confidence 45555566665554422 257999999999999999877754 779999999998886543321 2345578888
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcCC
Q psy11212 394 ASRLLTQVSKNFNTSTNNIQTRVTRLLSNAINDP 427 (448)
Q Consensus 394 AA~lL~~I~~~~~~sy~~L~~RI~~tl~k~l~d~ 427 (448)
++-+|++.++=+.. .+..-+.+++.+.+.+.++
T Consensus 520 ~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~ 552 (1023)
T 4hat_C 520 IMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET 552 (1023)
T ss_dssp HHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcC
Confidence 88999988876644 3555666666777777655
No 129
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.39 E-value=48 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.6
Q ss_pred hhhhhhhhhhhhcccC--------------CccCChhHHHHHHHh
Q psy11212 121 AQKLESISFKCMSHSK--------------RVKLLPVDIDDALNM 151 (448)
Q Consensus 121 ~q~l~~~A~Kfm~hsk--------------R~kLt~~DIn~AL~~ 151 (448)
-..+...|.+|+++-+ .+-||.++|+.||+-
T Consensus 9 Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 9 REPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456777888887754 267999999999973
No 130
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=22.24 E-value=1.6e+02 Score=28.89 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=76.2
Q ss_pred HHHHhcCCCHHHHHH---HHHhhhcC--CCc------ccchhhHHHHHHhhhhhccccCCHHHHHHHHHHHHHHhc-CCC
Q psy11212 288 ITEACVGSDEGRRFE---ALQSLATD--PGL------HEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVKALLD-NQS 355 (448)
Q Consensus 288 It~al~~~~e~~r~~---aL~sL~tD--~gL------~qLlPyfv~FI~e~V~~nl~~~nl~~L~~ll~~v~ALl~-N~~ 355 (448)
+++.+.+++++.+.. ||..|... +.. ..-+|.|++.+... .+.......+..+..|.. ++.
T Consensus 132 LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-------~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-------KKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHccChh
Confidence 344444555554443 45555542 211 13477777775421 345556666667777766 433
Q ss_pred cccccc-hhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCcchHHH-----HHHHHHHHhcCCCC
Q psy11212 356 LYLEKY-LHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNTSTNNIQTR-----VTRLLSNAINDPKI 429 (448)
Q Consensus 356 l~iepY-lHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~sy~~L~~R-----I~~tl~k~l~d~~~ 429 (448)
....-- .+..+|.++..+-... ..+.+.+++.|+.+|..|+...... +.-+.. .+..|.+.|.++
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~------~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~-- 275 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRS------QTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSH-- 275 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCC------SSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCS--
T ss_pred hhHHHHHhcCcHHHHHHHhccCC------CcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCC--
Confidence 322222 3567888777774321 1122478999999999888632111 222332 345666666654
Q ss_pred CccchhhhhhhhcccC
Q psy11212 430 NFPSLYGAIAGEGLVT 445 (448)
Q Consensus 430 ~l~t~YGAl~GL~alG 445 (448)
+....--|+..|..|.
T Consensus 276 ~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLS 291 (354)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHh
Confidence 3445666666665553
No 131
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=21.49 E-value=2.6e+02 Score=29.09 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHhcC-CCcchH
Q psy11212 335 NNLALLIYLMRMVKALLDNQSLYLEKYLHELLPSILSCIVSKQLCGRPEADNHWALRDFASRLLTQVSKNFNT-STNNIQ 413 (448)
Q Consensus 335 ~nl~~L~~ll~~v~ALl~N~~l~iepYlHqLlp~lLtCll~k~l~~~~~~~~hw~LRd~AA~lL~~I~~~~~~-sy~~L~ 413 (448)
.+.......+..+..|..+..-. .....++|.++..+- ...+.+|..|+.+|..++..-.. .-.-++
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~----------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~ 303 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG----------SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT----------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666777777777654321 234577887777652 23478999999999999864210 000112
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhhhhhcccC
Q psy11212 414 TRVTRLLSNAINDPKINFPSLYGAIAGEGLVT 445 (448)
Q Consensus 414 ~RI~~tl~k~l~d~~~~l~t~YGAl~GL~alG 445 (448)
...+..|.+.|.+..........|+..|..|.
T Consensus 304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 304 VGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 22455555555543222345555666555553
No 132
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=20.03 E-value=45 Score=25.17 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=29.8
Q ss_pred CCcchhhhhhhhhhhhcccCCccCChhHHHHHHHh
Q psy11212 117 VDKSAQKLESISFKCMSHSKRVKLLPVDIDDALNM 151 (448)
Q Consensus 117 ~~~~~q~l~~~A~Kfm~hskR~kLt~~DIn~AL~~ 151 (448)
+..+...+.++|...+.+..+..+|.+|+..||+-
T Consensus 38 SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 38 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44578888899998888888899999999999974
Done!