RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11212
         (448 letters)



>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 70

 Score = 61.2 bits (149), Expect = 7e-13
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 3  IYGTSFSIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ 46
          +YG+S S ESMKVIAESIG+ +L DDAAKEL+++++   K I+Q
Sbjct: 2  LYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQ 45



 Score = 35.4 bits (82), Expect = 0.001
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 130 KCMSHSKRVKLLPVDIDDALNM 151
           K M+H+KR KL   DID +L +
Sbjct: 49  KFMNHAKRQKLSVRDIDMSLKV 70


>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 82

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 128 SFKCMSHSKRVKLLPVDIDDALNMKNIEPIYG 159
           +     H+KR  +  +D+  AL  +    +YG
Sbjct: 50  AVTYTEHAKRKTVTAMDVVYALK-RQGRTLYG 80



 Score = 33.2 bits (76), Expect = 0.008
 Identities = 4/38 (10%), Positives = 16/38 (42%)

Query: 9  SIESMKVIAESIGIPNLPDDAAKELSDNITYCCKVIIQ 46
          +  +++ +A   G+  +     +E    +    + +I+
Sbjct: 11 TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIR 48


>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
           Ermc' [TaxId: 1423]}
          Length = 235

 Score = 32.1 bits (72), Expect = 0.090
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 91  ALETHLRTHWLAIEGVQPTVPENPPPVDKSAQKLESISFKCMSHSKRVKLLPVDIDDALN 150
             +  + +  + +        +      K  QK      K ++   +        +++L 
Sbjct: 155 HPKPKVNSSLIRLN------RKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLK 208

Query: 151 MKNIEPIYGLTVSQFL 166
              I+ +  ++  QFL
Sbjct: 209 HAGIDDLNNISFEQFL 224


>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
           erythrocytes [TaxId: 9031]}
          Length = 95

 Score = 27.1 bits (60), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 131 CMSHSKRVKLLPVDIDDAL 149
           C  H+KRV ++P DI  A 
Sbjct: 70  CAIHAKRVTIMPKDIQLAR 88


>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII)
          {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 180

 Score = 27.8 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)

Query: 26 PDDAAKELSDNITYCCKVIIQPIYGLTVSQ 55
           +DAA  +        KVII P YG+ V+Q
Sbjct: 13 AEDAAFIMK----NASKVIIVPGYGMAVAQ 38


>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 177

 Score = 26.6 bits (59), Expect = 3.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 30 AKELSDNITYCCKVIIQPIYGLTVSQ 55
               D I     +II P YGL  ++
Sbjct: 8  LDNAIDMIREANSIIITPGYGLCAAK 33


>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354,
           C-terminal domain {Bacteroides thetaiotaomicron [TaxId:
           818]}
          Length = 76

 Score = 24.6 bits (54), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 225 PVDKSA--QKLESIDPISKLGKKDKDTSGKPTSAKLEKLR 262
           P+DK    +++  +D I K  K DK  S +   A L K  
Sbjct: 27  PMDKRNFRKRVAEMDFIEKTDKIDKLGSKRG--AALYKFN 64


>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga
           maritima [TaxId: 2336]}
          Length = 308

 Score = 26.2 bits (57), Expect = 10.0
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 6/43 (13%)

Query: 22  IPNLPDDAAKELSDNITYCCKVIIQPIYGLTVSQFLPFKHASG 64
           I  + DD   E+         V    I+   +   LP +    
Sbjct: 209 IHGIDDDVVVEV------PALVDKNGIHPEKIEPPLPDRVVKY 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,623,302
Number of extensions: 74924
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 12
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)