Query psy11213
Match_columns 621
No_of_seqs 439 out of 3162
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0482|consensus 100.0 2E-121 4E-126 948.9 36.3 528 87-621 15-627 (721)
2 KOG0480|consensus 100.0 2E-105 4E-110 851.7 41.8 490 87-621 27-632 (764)
3 KOG0477|consensus 100.0 3E-102 7E-107 821.3 25.6 508 63-621 142-746 (854)
4 COG1241 MCM2 Predicted ATPase 100.0 8E-100 2E-104 841.8 43.1 474 106-621 16-581 (682)
5 KOG0478|consensus 100.0 6E-100 1E-104 815.1 33.2 504 29-621 109-713 (804)
6 KOG0481|consensus 100.0 2.6E-98 6E-103 777.3 38.1 492 86-621 29-628 (729)
7 KOG0479|consensus 100.0 8.4E-97 2E-101 775.4 38.2 476 106-621 27-631 (818)
8 PTZ00111 DNA replication licen 100.0 8.6E-92 1.9E-96 792.9 45.8 498 87-621 90-793 (915)
9 smart00350 MCM minichromosome 100.0 7.1E-80 1.5E-84 684.1 38.4 396 223-621 2-493 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 9.5E-61 2.1E-65 503.8 7.4 277 345-621 28-315 (331)
11 PRK13407 bchI magnesium chelat 99.9 1.4E-24 3E-29 227.6 21.1 247 344-621 11-295 (334)
12 TIGR02030 BchI-ChlI magnesium 99.9 9.9E-25 2.1E-29 229.2 15.8 247 343-621 6-298 (337)
13 TIGR02031 BchD-ChlD magnesium 99.9 2.4E-24 5.2E-29 242.8 19.2 224 371-621 18-247 (589)
14 TIGR02442 Cob-chelat-sub cobal 99.9 3.9E-24 8.4E-29 243.7 15.9 226 371-621 27-293 (633)
15 TIGR00368 Mg chelatase-related 99.9 8.9E-24 1.9E-28 232.6 16.5 235 368-621 210-488 (499)
16 PRK09862 putative ATP-dependen 99.9 1E-23 2.2E-28 231.1 15.0 234 368-621 209-481 (506)
17 CHL00081 chlI Mg-protoporyphyr 99.9 2.8E-23 6.1E-28 218.0 16.9 246 343-621 19-311 (350)
18 PRK13531 regulatory ATPase Rav 99.9 3.4E-22 7.3E-27 215.3 16.6 249 339-621 18-273 (498)
19 COG0714 MoxR-like ATPases [Gen 99.9 6.2E-22 1.3E-26 209.5 14.7 250 343-620 26-284 (329)
20 COG1239 ChlI Mg-chelatase subu 99.9 3.5E-22 7.5E-27 209.0 11.5 253 337-621 13-311 (423)
21 PF07726 AAA_3: ATPase family 99.9 5.1E-22 1.1E-26 177.1 8.6 125 371-510 1-129 (131)
22 PF01078 Mg_chelatase: Magnesi 99.9 4.8E-22 1E-26 192.5 8.3 150 368-517 21-200 (206)
23 COG0606 Predicted ATPase with 99.9 2.3E-21 5E-26 205.4 11.9 226 368-620 197-473 (490)
24 TIGR01650 PD_CobS cobaltochela 99.8 2.2E-19 4.8E-24 185.9 19.7 210 371-610 66-282 (327)
25 PRK13406 bchD magnesium chelat 99.8 6.2E-20 1.3E-24 205.3 15.8 206 371-621 27-239 (584)
26 TIGR02640 gas_vesic_GvpN gas v 99.8 1.7E-18 3.7E-23 177.4 18.2 201 370-620 22-245 (262)
27 PF05496 RuvB_N: Holliday junc 99.7 8.8E-17 1.9E-21 157.0 10.1 171 371-612 52-229 (233)
28 PF07728 AAA_5: AAA domain (dy 99.7 1.3E-16 2.8E-21 147.5 8.6 129 371-510 1-139 (139)
29 PHA02244 ATPase-like protein 99.7 1.7E-15 3.6E-20 158.7 17.0 141 370-521 120-262 (383)
30 PF14551 MCM_N: MCM N-terminal 99.6 7.3E-17 1.6E-21 145.5 4.3 117 87-242 3-121 (121)
31 TIGR00764 lon_rel lon-related 99.6 3E-15 6.5E-20 169.5 17.8 159 424-621 208-380 (608)
32 COG2255 RuvB Holliday junction 99.6 4.6E-14 1E-18 140.5 14.2 178 371-620 54-239 (332)
33 COG3829 RocR Transcriptional r 99.5 6.5E-14 1.4E-18 150.9 10.5 199 368-608 267-475 (560)
34 TIGR02902 spore_lonB ATP-depen 99.5 4.8E-13 1E-17 149.9 16.2 193 370-620 87-320 (531)
35 PRK13765 ATP-dependent proteas 99.5 6.2E-13 1.3E-17 150.3 14.8 156 424-621 217-389 (637)
36 COG3604 FhlA Transcriptional r 99.4 5.5E-13 1.2E-17 142.0 12.2 202 368-612 245-456 (550)
37 COG2204 AtoC Response regulato 99.4 7.7E-13 1.7E-17 142.8 11.7 203 368-612 163-374 (464)
38 PRK05342 clpX ATP-dependent pr 99.4 1.7E-12 3.6E-17 140.5 13.2 193 369-579 108-356 (412)
39 TIGR02974 phageshock_pspF psp 99.4 1.5E-12 3.3E-17 137.6 12.5 198 369-612 22-233 (329)
40 TIGR00382 clpX endopeptidase C 99.4 1.5E-12 3.2E-17 140.2 11.8 208 369-606 116-378 (413)
41 COG2256 MGS1 ATPase related to 99.4 1.1E-12 2.4E-17 136.5 9.3 112 369-519 48-163 (436)
42 TIGR02881 spore_V_K stage V sp 99.4 7.2E-12 1.6E-16 128.4 14.5 187 370-616 43-242 (261)
43 PRK00080 ruvB Holliday junctio 99.3 1.3E-11 2.8E-16 130.8 14.8 153 371-562 53-213 (328)
44 CHL00181 cbbX CbbX; Provisiona 99.3 7.5E-12 1.6E-16 129.7 12.1 138 369-534 59-210 (287)
45 TIGR02880 cbbX_cfxQ probable R 99.3 7.7E-12 1.7E-16 129.6 12.0 188 369-616 58-257 (284)
46 COG0466 Lon ATP-dependent Lon 99.3 8.6E-12 1.9E-16 137.8 11.0 137 371-532 352-507 (782)
47 PRK11608 pspF phage shock prot 99.3 3.4E-11 7.3E-16 127.3 14.4 197 369-611 29-239 (326)
48 COG1221 PspF Transcriptional r 99.3 2.9E-11 6.4E-16 128.5 13.7 198 369-617 101-314 (403)
49 TIGR00635 ruvB Holliday juncti 99.3 5.7E-11 1.2E-15 124.5 15.5 153 371-561 32-191 (305)
50 PRK10787 DNA-binding ATP-depen 99.2 3.5E-11 7.7E-16 139.9 12.2 141 371-533 351-506 (784)
51 TIGR01817 nifA Nif-specific re 99.2 5.4E-11 1.2E-15 134.3 13.1 197 368-610 218-426 (534)
52 PRK15424 propionate catabolism 99.2 9E-11 2E-15 130.8 14.3 203 368-610 241-463 (538)
53 TIGR02329 propionate_PrpR prop 99.2 1.4E-10 3.1E-15 129.3 15.6 204 368-611 234-449 (526)
54 KOG0737|consensus 99.2 6.3E-12 1.4E-16 129.7 3.3 164 371-562 129-308 (386)
55 PRK05022 anaerobic nitric oxid 99.2 1.9E-10 4.2E-15 128.8 15.3 203 368-613 209-421 (509)
56 PF00158 Sigma54_activat: Sigm 99.2 1.2E-11 2.7E-16 118.0 4.5 134 369-511 22-163 (168)
57 PF07724 AAA_2: AAA domain (Cd 99.2 2.3E-11 4.9E-16 116.5 5.6 138 370-513 4-171 (171)
58 TIGR00763 lon ATP-dependent pr 99.2 1.5E-10 3.3E-15 135.7 12.7 144 371-533 349-505 (775)
59 PRK11034 clpA ATP-dependent Cl 99.2 2.6E-10 5.7E-15 131.8 13.9 181 371-578 490-692 (758)
60 COG1219 ClpX ATP-dependent pro 99.1 1.2E-10 2.6E-15 117.7 9.2 251 327-607 52-362 (408)
61 PF12775 AAA_7: P-loop contain 99.1 6.9E-10 1.5E-14 114.2 13.2 206 369-607 33-250 (272)
62 PRK11388 DNA-binding transcrip 99.1 5.5E-10 1.2E-14 128.8 13.9 140 368-519 347-494 (638)
63 KOG2004|consensus 99.1 4.3E-10 9.3E-15 123.9 12.1 171 370-581 439-626 (906)
64 TIGR02915 PEP_resp_reg putativ 99.1 6.9E-10 1.5E-14 122.5 14.0 139 369-516 162-308 (445)
65 PRK15429 formate hydrogenlyase 99.1 6.8E-10 1.5E-14 129.0 14.6 198 368-611 398-608 (686)
66 PRK10820 DNA-binding transcrip 99.1 4.6E-10 9.9E-15 126.0 12.7 195 369-609 227-434 (520)
67 COG1222 RPT1 ATP-dependent 26S 99.1 2.1E-10 4.6E-15 118.0 8.6 129 371-530 187-332 (406)
68 KOG0734|consensus 99.1 1E-10 2.3E-15 124.8 6.5 134 371-534 339-485 (752)
69 smart00763 AAA_PrkA PrkA AAA d 99.1 9.1E-10 2E-14 115.8 13.0 100 426-534 229-328 (361)
70 TIGR02639 ClpA ATP-dependent C 99.1 9E-10 1.9E-14 128.5 14.0 182 371-579 486-689 (731)
71 PRK10923 glnG nitrogen regulat 99.1 2E-09 4.4E-14 119.6 15.7 198 368-611 160-370 (469)
72 CHL00195 ycf46 Ycf46; Provisio 99.1 5.6E-10 1.2E-14 123.3 11.0 130 371-535 261-407 (489)
73 PRK11361 acetoacetate metaboli 99.0 1.6E-09 3.4E-14 120.0 13.6 138 369-515 166-311 (457)
74 TIGR02903 spore_lon_C ATP-depe 99.0 2.1E-09 4.6E-14 122.5 14.9 209 371-608 177-430 (615)
75 KOG0738|consensus 99.0 4.9E-10 1.1E-14 116.0 6.9 160 371-561 247-428 (491)
76 TIGR03345 VI_ClpV1 type VI sec 99.0 3.8E-09 8.2E-14 124.4 15.3 207 371-617 598-837 (852)
77 TIGR01818 ntrC nitrogen regula 99.0 4.3E-09 9.4E-14 116.7 14.3 197 368-610 156-365 (463)
78 PRK03992 proteasome-activating 99.0 2.1E-09 4.5E-14 116.5 11.3 133 371-533 167-315 (389)
79 TIGR02639 ClpA ATP-dependent C 99.0 1.7E-09 3.7E-14 126.2 11.2 175 370-581 204-403 (731)
80 PRK15115 response regulator Gl 99.0 2.4E-09 5.2E-14 118.2 11.2 139 369-516 157-303 (444)
81 PRK11331 5-methylcytosine-spec 99.0 3.8E-09 8.1E-14 114.0 11.6 135 371-516 196-356 (459)
82 KOG2028|consensus 98.9 1.5E-09 3.2E-14 111.4 7.8 138 351-535 150-296 (554)
83 TIGR03346 chaperone_ClpB ATP-d 98.9 1E-08 2.2E-13 121.6 15.5 198 371-606 597-819 (852)
84 CHL00095 clpC Clp protease ATP 98.9 1.3E-08 2.9E-13 120.2 16.0 181 371-579 541-759 (821)
85 PTZ00454 26S protease regulato 98.9 5.4E-09 1.2E-13 113.0 11.0 134 371-534 181-330 (398)
86 PRK14956 DNA polymerase III su 98.9 5.9E-09 1.3E-13 113.7 11.3 133 372-533 43-193 (484)
87 COG5271 MDN1 AAA ATPase contai 98.9 7.2E-09 1.6E-13 121.1 12.3 154 370-532 1544-1702(4600)
88 PRK10365 transcriptional regul 98.9 1.1E-08 2.3E-13 112.8 13.5 136 369-513 162-305 (441)
89 KOG0745|consensus 98.9 4.2E-10 9.2E-15 117.8 2.2 135 368-511 225-377 (564)
90 PF00004 AAA: ATPase family as 98.9 5.4E-10 1.2E-14 101.3 2.7 115 372-516 1-130 (132)
91 TIGR01241 FtsH_fam ATP-depende 98.9 6.6E-09 1.4E-13 116.2 11.9 131 371-534 90-239 (495)
92 PRK13342 recombination factor 98.9 1.2E-08 2.5E-13 111.6 13.5 146 371-561 38-186 (413)
93 TIGR03345 VI_ClpV1 type VI sec 98.9 1.1E-08 2.4E-13 120.6 13.4 181 371-584 210-411 (852)
94 CHL00176 ftsH cell division pr 98.9 8.5E-09 1.8E-13 117.5 11.3 134 371-534 218-367 (638)
95 PLN00020 ribulose bisphosphate 98.9 6.4E-09 1.4E-13 108.8 9.4 141 371-534 150-312 (413)
96 COG0542 clpA ATP-binding subun 98.9 1.2E-08 2.5E-13 116.3 12.1 184 371-581 523-734 (786)
97 PLN03025 replication factor C 98.9 1E-08 2.2E-13 108.3 11.0 132 370-533 35-171 (319)
98 cd00009 AAA The AAA+ (ATPases 98.9 2.6E-09 5.6E-14 97.5 5.5 124 370-515 20-148 (151)
99 CHL00206 ycf2 Ycf2; Provisiona 98.9 1.5E-08 3.2E-13 122.7 12.8 75 434-530 1733-1814(2281)
100 PRK14962 DNA polymerase III su 98.9 1.6E-08 3.5E-13 111.7 12.3 134 371-533 38-189 (472)
101 TIGR03689 pup_AAA proteasome A 98.8 7.3E-09 1.6E-13 114.5 9.4 139 371-534 218-379 (512)
102 PRK10865 protein disaggregatio 98.8 1.6E-08 3.4E-13 119.6 12.8 180 371-578 600-805 (857)
103 TIGR01242 26Sp45 26S proteasom 98.8 8.3E-09 1.8E-13 111.0 9.5 133 371-533 158-306 (364)
104 PRK13341 recombination factor 98.8 1.3E-08 2.8E-13 117.4 11.6 124 371-534 54-182 (725)
105 PRK11034 clpA ATP-dependent Cl 98.8 7E-09 1.5E-13 120.2 9.4 177 370-583 208-409 (758)
106 COG1223 Predicted ATPase (AAA+ 98.8 7.2E-09 1.6E-13 102.3 7.7 132 371-534 153-298 (368)
107 COG3283 TyrR Transcriptional r 98.8 1.9E-08 4.2E-13 103.3 10.5 195 368-608 226-428 (511)
108 PRK05201 hslU ATP-dependent pr 98.8 5.1E-08 1.1E-12 104.3 14.0 139 433-607 249-401 (443)
109 PRK08903 DnaA regulatory inact 98.8 7E-08 1.5E-12 96.8 13.7 163 371-616 44-211 (227)
110 KOG0736|consensus 98.8 2.1E-08 4.6E-13 111.6 10.7 136 369-535 705-859 (953)
111 PTZ00361 26 proteosome regulat 98.8 1.6E-08 3.4E-13 110.3 9.1 132 371-533 219-367 (438)
112 COG5271 MDN1 AAA ATPase contai 98.8 3.1E-08 6.7E-13 116.0 11.6 144 368-520 887-1035(4600)
113 KOG0730|consensus 98.8 9.3E-09 2E-13 113.2 6.8 131 371-534 470-616 (693)
114 COG3284 AcoR Transcriptional a 98.8 1.7E-08 3.7E-13 111.2 8.6 157 368-534 335-500 (606)
115 COG0464 SpoVK ATPases of the A 98.7 3.7E-08 8.1E-13 110.3 10.7 126 371-534 278-424 (494)
116 TIGR00390 hslU ATP-dependent p 98.7 5.2E-08 1.1E-12 104.2 11.1 141 432-608 246-400 (441)
117 KOG0733|consensus 98.7 1.6E-08 3.5E-13 110.0 7.2 144 371-534 225-375 (802)
118 PRK14949 DNA polymerase III su 98.7 8.2E-08 1.8E-12 110.8 13.1 134 371-533 39-191 (944)
119 PRK10865 protein disaggregatio 98.7 5E-08 1.1E-12 115.4 11.4 175 371-582 201-400 (857)
120 PRK10733 hflB ATP-dependent me 98.7 5.5E-08 1.2E-12 111.8 11.3 131 371-534 187-336 (644)
121 TIGR01243 CDC48 AAA family ATP 98.7 4.1E-08 8.9E-13 115.0 9.7 130 371-533 489-635 (733)
122 KOG0733|consensus 98.7 6.2E-08 1.3E-12 105.5 10.2 134 370-535 546-694 (802)
123 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.5E-07 3.2E-12 94.1 12.0 167 371-617 40-214 (226)
124 CHL00095 clpC Clp protease ATP 98.7 5.6E-08 1.2E-12 114.9 9.2 178 371-585 202-403 (821)
125 COG1224 TIP49 DNA helicase TIP 98.6 8.1E-07 1.8E-11 91.7 16.2 129 434-621 292-421 (450)
126 PRK07003 DNA polymerase III su 98.6 2.1E-07 4.6E-12 105.6 13.0 154 372-562 41-211 (830)
127 PHA02544 44 clamp loader, smal 98.6 1.8E-07 3.9E-12 98.5 11.6 127 371-533 44-173 (316)
128 PF12774 AAA_6: Hydrolytic ATP 98.6 2E-07 4.2E-12 93.6 11.1 184 371-613 34-228 (231)
129 PRK14960 DNA polymerase III su 98.6 1.5E-07 3.2E-12 105.7 11.2 150 371-561 39-209 (702)
130 PRK14961 DNA polymerase III su 98.6 4.7E-07 1E-11 97.4 14.4 151 372-561 41-210 (363)
131 PRK06645 DNA polymerase III su 98.6 1.9E-07 4E-12 103.8 11.4 135 371-534 45-201 (507)
132 PRK06620 hypothetical protein; 98.6 9.9E-07 2.2E-11 87.7 15.4 155 371-617 46-202 (214)
133 KOG0652|consensus 98.6 3.8E-08 8.3E-13 97.1 4.8 130 371-530 207-352 (424)
134 PRK08084 DNA replication initi 98.6 2.2E-07 4.8E-12 93.8 10.2 25 370-394 46-70 (235)
135 TIGR03346 chaperone_ClpB ATP-d 98.6 2.1E-07 4.5E-12 110.5 11.4 182 371-585 196-398 (852)
136 KOG0731|consensus 98.6 2.5E-07 5.3E-12 105.0 11.0 125 371-531 346-493 (774)
137 PRK07994 DNA polymerase III su 98.6 3.1E-07 6.7E-12 104.3 11.6 131 371-533 39-191 (647)
138 KOG0727|consensus 98.6 3E-07 6.5E-12 90.5 9.5 126 371-533 191-339 (408)
139 PRK14958 DNA polymerase III su 98.6 4.5E-07 9.8E-12 101.2 12.4 132 372-533 41-191 (509)
140 PRK14957 DNA polymerase III su 98.6 3E-07 6.5E-12 102.8 10.8 131 371-533 40-191 (546)
141 PRK12323 DNA polymerase III su 98.5 1.7E-07 3.7E-12 105.0 8.6 71 434-533 125-196 (700)
142 KOG0740|consensus 98.5 2.4E-08 5.2E-13 106.9 1.6 144 371-536 188-336 (428)
143 PRK14964 DNA polymerase III su 98.5 3.7E-07 8E-12 100.8 10.5 130 371-532 37-187 (491)
144 KOG0989|consensus 98.5 3.2E-07 7E-12 93.1 8.7 136 345-517 40-186 (346)
145 KOG0739|consensus 98.5 1.1E-07 2.3E-12 95.8 5.1 124 370-527 167-306 (439)
146 PRK05896 DNA polymerase III su 98.5 3.4E-07 7.4E-12 102.6 9.7 130 371-533 40-191 (605)
147 PRK12402 replication factor C 98.5 1.4E-06 3E-11 92.4 13.7 92 432-561 124-216 (337)
148 KOG0742|consensus 98.5 3.9E-07 8.4E-12 95.2 8.8 135 371-538 386-533 (630)
149 PRK08691 DNA polymerase III su 98.5 1E-06 2.2E-11 99.9 12.9 151 371-561 40-210 (709)
150 COG1067 LonB Predicted ATP-dep 98.5 2E-06 4.3E-11 97.6 15.0 187 399-621 185-388 (647)
151 PRK06893 DNA replication initi 98.5 1.1E-06 2.4E-11 88.4 11.4 145 371-579 41-192 (229)
152 PRK00440 rfc replication facto 98.5 1.3E-06 2.8E-11 91.9 12.4 130 371-533 40-174 (319)
153 PRK08451 DNA polymerase III su 98.5 1.4E-06 3E-11 97.1 13.2 73 432-533 116-189 (535)
154 COG0465 HflB ATP-dependent Zn 98.5 3.9E-07 8.5E-12 101.5 8.7 127 371-530 185-330 (596)
155 PRK08727 hypothetical protein; 98.4 1.4E-06 3.1E-11 87.8 11.7 123 371-531 43-173 (233)
156 TIGR00362 DnaA chromosomal rep 98.4 5.1E-07 1.1E-11 98.6 8.4 136 371-534 138-282 (405)
157 PRK14959 DNA polymerase III su 98.4 1.2E-06 2.6E-11 98.7 11.4 152 370-562 39-211 (624)
158 TIGR01243 CDC48 AAA family ATP 98.4 3.1E-07 6.7E-12 107.6 6.8 128 371-532 214-358 (733)
159 PRK14951 DNA polymerase III su 98.4 1.6E-06 3.4E-11 98.4 12.0 90 434-561 125-215 (618)
160 KOG0743|consensus 98.4 7.2E-07 1.6E-11 95.1 8.7 138 371-535 237-385 (457)
161 PRK05563 DNA polymerase III su 98.4 2.8E-06 6E-11 96.2 13.8 133 371-533 40-191 (559)
162 PRK04195 replication factor C 98.4 2.4E-06 5.3E-11 95.3 13.0 147 371-561 41-192 (482)
163 PRK14952 DNA polymerase III su 98.4 2.9E-06 6.3E-11 95.8 13.5 134 371-533 36-190 (584)
164 smart00382 AAA ATPases associa 98.4 3.6E-07 7.8E-12 82.4 5.0 129 370-516 3-144 (148)
165 PRK09087 hypothetical protein; 98.4 2.7E-06 5.9E-11 85.3 11.7 119 371-532 46-165 (226)
166 PHA01747 putative ATP-dependen 98.4 1.8E-06 4E-11 89.9 10.5 165 369-563 190-370 (425)
167 PRK14969 DNA polymerase III su 98.4 2.6E-06 5.7E-11 95.7 12.4 130 372-533 41-191 (527)
168 PRK00411 cdc6 cell division co 98.4 3E-06 6.5E-11 92.1 12.4 162 371-562 57-242 (394)
169 TIGR02928 orc1/cdc6 family rep 98.3 3.4E-06 7.3E-11 90.7 12.0 82 435-534 131-213 (365)
170 PRK00149 dnaA chromosomal repl 98.3 9.9E-07 2.1E-11 97.6 7.6 177 371-617 150-335 (450)
171 PRK14963 DNA polymerase III su 98.3 4.5E-06 9.7E-11 93.1 12.6 136 371-534 37-189 (504)
172 KOG0726|consensus 98.3 2.4E-07 5.2E-12 93.0 2.2 127 371-528 221-364 (440)
173 PRK14948 DNA polymerase III su 98.3 2.1E-06 4.5E-11 98.1 9.8 115 370-511 39-173 (620)
174 PF14532 Sigma54_activ_2: Sigm 98.3 3.8E-07 8.2E-12 84.2 3.2 114 369-516 21-134 (138)
175 PRK07133 DNA polymerase III su 98.3 4E-06 8.8E-11 95.9 11.9 134 371-533 42-190 (725)
176 PRK14086 dnaA chromosomal repl 98.3 1.6E-06 3.4E-11 97.5 8.4 134 371-532 316-458 (617)
177 PRK12422 chromosomal replicati 98.3 3.1E-06 6.8E-11 93.1 10.7 134 371-532 143-283 (445)
178 TIGR02397 dnaX_nterm DNA polym 98.3 2.6E-06 5.5E-11 91.2 9.8 133 371-534 38-190 (355)
179 PTZ00112 origin recognition co 98.3 2.2E-06 4.7E-11 98.1 9.4 97 436-561 872-968 (1164)
180 PRK07940 DNA polymerase III su 98.3 1.5E-06 3.1E-11 94.1 7.7 67 432-526 116-182 (394)
181 PRK14953 DNA polymerase III su 98.3 3.9E-06 8.4E-11 93.3 10.9 130 372-533 41-191 (486)
182 PRK06647 DNA polymerase III su 98.3 5.6E-06 1.2E-10 93.5 12.2 131 371-532 40-190 (563)
183 COG1220 HslU ATP-dependent pro 98.3 9.8E-06 2.1E-10 83.3 12.6 138 433-606 250-401 (444)
184 PRK05642 DNA replication initi 98.3 1E-05 2.2E-10 81.7 12.6 160 371-610 47-214 (234)
185 PRK14970 DNA polymerase III su 98.3 7.3E-06 1.6E-10 88.3 12.3 134 371-532 41-179 (367)
186 PF00308 Bac_DnaA: Bacterial d 98.2 2.1E-06 4.5E-11 85.8 7.4 174 371-614 36-218 (219)
187 PRK14965 DNA polymerase III su 98.2 5.8E-06 1.3E-10 94.0 11.9 131 371-533 40-191 (576)
188 PRK14955 DNA polymerase III su 98.2 4E-06 8.6E-11 91.3 9.8 29 431-459 125-153 (397)
189 TIGR02688 conserved hypothetic 98.2 3.3E-06 7.2E-11 90.4 8.8 99 370-485 210-312 (449)
190 PF05673 DUF815: Protein of un 98.2 1E-05 2.2E-10 80.9 11.2 164 370-564 53-230 (249)
191 KOG0744|consensus 98.2 3.2E-06 7E-11 86.2 7.4 134 371-533 179-340 (423)
192 KOG0728|consensus 98.2 1.5E-06 3.2E-11 85.7 4.5 129 371-530 183-328 (404)
193 PRK14088 dnaA chromosomal repl 98.2 4.3E-06 9.4E-11 92.1 8.8 136 371-533 132-276 (440)
194 PRK14971 DNA polymerase III su 98.2 1.3E-05 2.8E-10 91.6 12.5 112 371-511 40-173 (614)
195 KOG0735|consensus 98.2 6E-06 1.3E-10 91.8 9.1 131 370-534 702-849 (952)
196 PRK07764 DNA polymerase III su 98.2 5.8E-06 1.3E-10 96.9 9.6 132 371-534 38-193 (824)
197 KOG0991|consensus 98.2 1.5E-06 3.3E-11 84.9 4.0 112 370-511 49-165 (333)
198 PRK09111 DNA polymerase III su 98.1 2.9E-05 6.2E-10 88.3 14.0 150 371-561 48-223 (598)
199 PRK06305 DNA polymerase III su 98.1 1.3E-05 2.9E-10 88.4 11.1 131 371-533 41-193 (451)
200 PRK14950 DNA polymerase III su 98.1 1.5E-05 3.2E-10 91.0 11.8 153 371-561 40-211 (585)
201 KOG1808|consensus 98.1 3.7E-06 8E-11 103.1 7.0 145 368-521 439-588 (1856)
202 KOG0651|consensus 98.1 2.3E-06 4.9E-11 86.9 4.2 127 371-527 168-310 (388)
203 COG0542 clpA ATP-binding subun 98.1 1.4E-05 3.1E-10 91.5 11.0 179 371-586 193-396 (786)
204 PRK04132 replication factor C 98.1 1.5E-05 3.1E-10 93.2 11.0 149 370-561 565-721 (846)
205 PRK14087 dnaA chromosomal repl 98.1 1.3E-05 2.9E-10 88.4 10.2 138 371-534 143-289 (450)
206 TIGR00678 holB DNA polymerase 98.1 9.2E-06 2E-10 79.0 7.9 65 432-524 95-159 (188)
207 COG2812 DnaX DNA polymerase II 98.1 1.4E-05 3.1E-10 88.2 10.0 114 371-510 40-170 (515)
208 PRK14954 DNA polymerase III su 98.1 1.7E-05 3.8E-10 90.2 10.7 65 431-524 125-190 (620)
209 COG4650 RtcR Sigma54-dependent 98.0 1.6E-06 3.6E-11 87.1 1.8 113 370-485 209-332 (531)
210 PF13337 Lon_2: Putative ATP-d 97.9 9.1E-05 2E-09 80.0 12.9 100 370-486 209-311 (457)
211 COG0470 HolB ATPase involved i 97.9 1.4E-05 3.1E-10 84.0 5.6 116 370-511 24-161 (325)
212 PRK15455 PrkA family serine pr 97.9 4.7E-05 1E-09 84.5 9.6 99 426-535 248-348 (644)
213 TIGR03015 pepcterm_ATPase puta 97.9 0.00012 2.6E-09 75.0 12.3 24 371-394 45-68 (269)
214 KOG0730|consensus 97.9 1.7E-05 3.6E-10 88.1 5.9 135 370-536 219-367 (693)
215 COG1474 CDC6 Cdc6-related prot 97.9 8.7E-05 1.9E-09 79.6 11.3 192 370-621 43-254 (366)
216 KOG1051|consensus 97.8 9.9E-05 2.1E-09 85.9 11.9 115 368-486 590-711 (898)
217 PRK05707 DNA polymerase III su 97.8 3.2E-05 6.8E-10 81.9 7.2 63 433-524 106-169 (328)
218 KOG0741|consensus 97.8 3.4E-06 7.4E-11 90.9 -1.0 169 321-530 221-411 (744)
219 PF00910 RNA_helicase: RNA hel 97.7 3.9E-05 8.4E-10 67.6 4.7 99 372-484 1-106 (107)
220 PRK05564 DNA polymerase III su 97.7 0.00022 4.8E-09 75.1 11.2 124 371-528 28-160 (313)
221 PF08298 AAA_PrkA: PrkA AAA do 97.7 2.5E-05 5.4E-10 81.9 3.8 99 426-534 226-325 (358)
222 COG5245 DYN1 Dynein, heavy cha 97.7 0.00012 2.7E-09 86.7 9.7 207 370-613 1495-1717(3164)
223 KOG0729|consensus 97.7 3.4E-05 7.4E-10 76.9 4.5 124 371-523 213-351 (435)
224 PRK08058 DNA polymerase III su 97.7 0.0001 2.2E-09 78.3 8.1 65 431-524 108-173 (329)
225 PRK09112 DNA polymerase III su 97.7 3.6E-05 7.8E-10 82.2 4.7 68 435-531 143-211 (351)
226 PRK06526 transposase; Provisio 97.6 6.1E-06 1.3E-10 84.2 -2.0 121 371-510 100-222 (254)
227 PRK08181 transposase; Validate 97.6 7.8E-06 1.7E-10 83.9 -1.8 117 371-510 108-230 (269)
228 PF13177 DNA_pol3_delta2: DNA 97.6 9E-05 2E-09 70.4 5.2 51 433-510 102-153 (162)
229 PRK12377 putative replication 97.6 8E-06 1.7E-10 82.9 -2.3 114 370-510 102-222 (248)
230 PRK07399 DNA polymerase III su 97.6 0.00023 5E-09 75.0 8.5 70 432-531 123-193 (314)
231 PRK06871 DNA polymerase III su 97.5 0.00029 6.4E-09 74.2 8.6 62 434-524 108-170 (325)
232 PRK07993 DNA polymerase III su 97.5 0.00024 5.2E-09 75.4 7.9 63 433-524 108-171 (334)
233 COG2607 Predicted ATPase (AAA+ 97.5 0.00088 1.9E-08 66.3 10.9 144 371-534 87-240 (287)
234 KOG1942|consensus 97.5 0.00089 1.9E-08 67.8 11.2 129 434-620 297-426 (456)
235 KOG0990|consensus 97.5 0.00011 2.5E-09 75.3 4.9 135 370-535 63-205 (360)
236 KOG0732|consensus 97.5 0.0003 6.5E-09 82.7 8.4 151 371-562 301-486 (1080)
237 PRK08769 DNA polymerase III su 97.4 0.0004 8.6E-09 73.1 8.3 62 434-524 114-176 (319)
238 KOG2035|consensus 97.4 0.00046 9.9E-09 69.6 7.4 72 435-534 129-200 (351)
239 PRK08116 hypothetical protein; 97.4 3.9E-05 8.5E-10 79.0 -0.3 98 370-486 115-221 (268)
240 PRK06964 DNA polymerase III su 97.4 0.00061 1.3E-08 72.4 8.7 62 434-524 133-195 (342)
241 TIGR02653 Lon_rel_chp conserve 97.4 0.00098 2.1E-08 75.0 10.5 98 370-484 217-317 (675)
242 PRK07471 DNA polymerase III su 97.3 0.00046 1E-08 74.1 7.5 67 435-530 143-210 (365)
243 PRK08699 DNA polymerase III su 97.3 0.00033 7.2E-09 74.1 5.9 65 432-524 112-176 (325)
244 COG1618 Predicted nucleotide k 97.3 0.0017 3.6E-08 60.7 9.2 26 370-395 6-31 (179)
245 PRK09183 transposase/IS protei 97.2 2.5E-05 5.5E-10 80.0 -3.2 117 371-510 104-228 (259)
246 KOG0736|consensus 97.2 0.00098 2.1E-08 75.4 8.7 144 368-537 430-580 (953)
247 PF03266 NTPase_1: NTPase; In 97.2 0.00066 1.4E-08 64.9 6.4 90 371-460 1-125 (168)
248 COG0593 DnaA ATPase involved i 97.2 0.0023 5E-08 69.0 10.9 176 371-617 115-299 (408)
249 PRK06090 DNA polymerase III su 97.2 0.0008 1.7E-08 70.8 7.2 122 371-524 27-171 (319)
250 COG3854 SpoIIIAA ncharacterize 97.1 0.00056 1.2E-08 67.2 5.0 28 368-395 136-163 (308)
251 PRK06921 hypothetical protein; 97.1 8.2E-05 1.8E-09 76.5 -0.9 24 371-394 119-142 (266)
252 TIGR00602 rad24 checkpoint pro 97.1 0.0018 4E-08 74.0 9.7 153 372-535 113-289 (637)
253 PRK06835 DNA replication prote 96.9 0.00012 2.6E-09 77.4 -1.6 97 370-486 184-289 (329)
254 PRK11823 DNA repair protein Ra 96.9 0.0013 2.9E-08 72.6 6.1 33 371-403 82-118 (446)
255 PF05272 VirE: Virulence-assoc 96.8 0.00088 1.9E-08 65.8 3.6 96 370-486 53-150 (198)
256 PRK07952 DNA replication prote 96.8 0.00044 9.5E-09 70.1 1.2 111 371-510 101-221 (244)
257 COG1484 DnaC DNA replication p 96.8 0.00016 3.5E-09 73.8 -2.0 119 371-510 107-230 (254)
258 COG1066 Sms Predicted ATP-depe 96.8 0.003 6.5E-08 67.3 7.1 34 371-404 95-131 (456)
259 PF06068 TIP49: TIP49 C-termin 96.8 0.0067 1.4E-07 64.2 9.5 116 434-608 279-395 (398)
260 PHA02774 E1; Provisional 96.7 0.0042 9.1E-08 69.4 8.3 98 370-486 435-533 (613)
261 KOG1969|consensus 96.6 0.0013 2.9E-08 74.0 3.3 83 370-458 327-412 (877)
262 KOG2680|consensus 96.6 0.035 7.5E-07 56.9 12.6 102 371-516 254-355 (454)
263 PRK05917 DNA polymerase III su 96.6 0.0054 1.2E-07 63.5 7.2 114 370-511 20-147 (290)
264 PF13401 AAA_22: AAA domain; P 96.5 0.00036 7.8E-09 63.1 -1.4 24 370-393 5-28 (131)
265 TIGR01613 primase_Cterm phage/ 96.5 0.021 4.5E-07 60.0 11.4 118 371-510 78-196 (304)
266 PHA02624 large T antigen; Prov 96.3 0.0068 1.5E-07 68.0 6.2 114 369-516 431-559 (647)
267 PRK13695 putative NTPase; Prov 96.2 0.011 2.4E-07 56.6 6.9 23 371-393 2-24 (174)
268 KOG0735|consensus 96.2 0.0022 4.7E-08 72.1 1.8 136 371-535 433-588 (952)
269 cd01121 Sms Sms (bacterial rad 96.1 0.0082 1.8E-07 64.7 5.5 33 371-403 84-120 (372)
270 PF13207 AAA_17: AAA domain; P 96.0 0.0044 9.6E-08 55.2 2.7 23 372-394 2-24 (121)
271 PF03215 Rad17: Rad17 cell cyc 96.0 0.048 1E-06 61.3 11.4 158 371-536 47-229 (519)
272 TIGR00416 sms DNA repair prote 96.0 0.0099 2.2E-07 65.8 5.9 33 371-403 96-132 (454)
273 PF05621 TniB: Bacterial TniB 96.0 0.017 3.6E-07 59.9 7.0 25 371-395 63-87 (302)
274 PF13671 AAA_33: AAA domain; P 96.0 0.006 1.3E-07 55.9 3.3 23 372-394 2-24 (143)
275 PRK07132 DNA polymerase III su 95.9 0.025 5.4E-07 59.1 8.2 120 371-524 20-153 (299)
276 PRK14532 adenylate kinase; Pro 95.9 0.0074 1.6E-07 58.4 4.0 31 371-401 2-32 (188)
277 PF01443 Viral_helicase1: Vira 95.9 0.019 4E-07 57.4 6.7 82 372-456 1-85 (234)
278 PRK13947 shikimate kinase; Pro 95.8 0.0085 1.9E-07 56.9 3.9 32 371-402 3-34 (171)
279 PF13173 AAA_14: AAA domain 95.7 0.0054 1.2E-07 55.7 1.9 79 371-458 4-85 (128)
280 PF13654 AAA_32: AAA domain; P 95.7 0.019 4.2E-07 64.3 6.7 183 402-621 296-495 (509)
281 cd00464 SK Shikimate kinase (S 95.6 0.011 2.4E-07 54.9 3.8 29 371-399 1-29 (154)
282 COG0563 Adk Adenylate kinase a 95.6 0.01 2.2E-07 57.3 3.4 31 371-401 2-32 (178)
283 PHA00729 NTP-binding motif con 95.6 0.0091 2E-07 59.5 3.1 25 369-393 17-41 (226)
284 PRK00131 aroK shikimate kinase 95.6 0.012 2.7E-07 55.7 3.9 29 370-398 5-33 (175)
285 PF13604 AAA_30: AAA domain; P 95.5 0.006 1.3E-07 59.8 1.7 88 371-459 20-119 (196)
286 PRK00625 shikimate kinase; Pro 95.5 0.012 2.6E-07 56.6 3.7 30 371-400 2-31 (173)
287 PRK03839 putative kinase; Prov 95.5 0.012 2.6E-07 56.6 3.7 30 371-400 2-31 (180)
288 KOG3347|consensus 95.5 0.011 2.4E-07 54.5 3.2 27 370-396 8-34 (176)
289 PRK08118 topology modulation p 95.5 0.012 2.5E-07 56.2 3.5 27 371-397 3-29 (167)
290 PF09848 DUF2075: Uncharacteri 95.5 0.0054 1.2E-07 65.8 1.3 92 371-462 3-120 (352)
291 PRK05818 DNA polymerase III su 95.4 0.031 6.7E-07 56.9 6.3 50 434-510 89-139 (261)
292 PRK14530 adenylate kinase; Pro 95.4 0.015 3.2E-07 57.8 4.0 31 370-400 4-34 (215)
293 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.016 3.5E-07 55.7 4.0 26 372-397 2-27 (183)
294 PF03969 AFG1_ATPase: AFG1-lik 95.4 0.0042 9E-08 66.7 -0.2 25 371-395 64-88 (362)
295 PRK13949 shikimate kinase; Pro 95.3 0.016 3.5E-07 55.4 3.8 29 371-399 3-31 (169)
296 PRK04296 thymidine kinase; Pro 95.3 0.073 1.6E-06 51.9 8.3 21 372-392 5-25 (190)
297 PF05970 PIF1: PIF1-like helic 95.2 0.013 2.8E-07 63.1 3.0 89 370-458 23-127 (364)
298 PRK07261 topology modulation p 95.2 0.021 4.5E-07 54.7 4.0 23 371-393 2-24 (171)
299 PF13148 DUF3987: Protein of u 95.2 0.072 1.6E-06 57.5 8.7 161 434-615 150-338 (378)
300 cd01428 ADK Adenylate kinase ( 95.1 0.021 4.6E-07 55.2 4.0 29 371-399 1-29 (194)
301 PF13238 AAA_18: AAA domain; P 95.1 0.014 3.1E-07 52.0 2.6 22 372-393 1-22 (129)
302 PRK14531 adenylate kinase; Pro 95.0 0.023 5E-07 54.9 3.8 29 371-399 4-32 (183)
303 KOG1514|consensus 94.9 0.067 1.4E-06 60.6 7.5 76 434-533 509-589 (767)
304 PRK06217 hypothetical protein; 94.9 0.028 6.1E-07 54.3 4.1 28 371-398 3-30 (183)
305 PF13245 AAA_19: Part of AAA d 94.9 0.032 7E-07 45.9 3.8 23 371-393 12-35 (76)
306 cd02019 NK Nucleoside/nucleoti 94.9 0.025 5.4E-07 45.5 3.1 22 372-393 2-23 (69)
307 cd02021 GntK Gluconate kinase 94.9 0.028 6.1E-07 52.1 3.9 23 372-394 2-24 (150)
308 KOG1970|consensus 94.8 0.037 8.1E-07 61.0 5.2 28 370-397 111-138 (634)
309 KOG3595|consensus 94.8 0.42 9E-06 60.3 15.1 150 370-536 128-289 (1395)
310 PRK05057 aroK shikimate kinase 94.8 0.031 6.7E-07 53.6 4.1 31 371-401 6-36 (172)
311 COG4619 ABC-type uncharacteriz 94.8 0.054 1.2E-06 51.2 5.5 24 371-394 31-54 (223)
312 TIGR01360 aden_kin_iso1 adenyl 94.8 0.023 5E-07 54.6 3.2 25 371-395 5-29 (188)
313 PTZ00088 adenylate kinase 1; P 94.8 0.031 6.8E-07 56.2 4.2 33 370-402 7-39 (229)
314 PF01695 IstB_IS21: IstB-like 94.8 0.019 4.1E-07 55.4 2.5 118 370-510 48-171 (178)
315 TIGR01448 recD_rel helicase, p 94.8 0.028 6.2E-07 65.9 4.4 89 371-459 340-442 (720)
316 TIGR01313 therm_gnt_kin carboh 94.7 0.029 6.2E-07 52.9 3.5 23 372-394 1-23 (163)
317 PRK06762 hypothetical protein; 94.6 0.032 6.9E-07 52.8 3.8 25 371-395 4-28 (166)
318 COG0703 AroK Shikimate kinase 94.6 0.029 6.3E-07 53.4 3.3 33 370-402 3-35 (172)
319 PRK10536 hypothetical protein; 94.6 0.074 1.6E-06 54.1 6.4 26 433-458 176-201 (262)
320 PRK10078 ribose 1,5-bisphospho 94.6 0.035 7.5E-07 53.8 3.9 30 370-399 3-32 (186)
321 TIGR02768 TraA_Ti Ti-type conj 94.6 0.02 4.4E-07 67.3 2.7 85 371-458 370-464 (744)
322 COG1120 FepC ABC-type cobalami 94.6 0.044 9.4E-07 55.8 4.7 41 345-394 13-53 (258)
323 PRK14526 adenylate kinase; Pro 94.6 0.034 7.4E-07 55.2 3.9 32 371-402 2-33 (211)
324 TIGR01351 adk adenylate kinase 94.6 0.033 7.1E-07 55.1 3.8 30 371-400 1-30 (210)
325 PRK14528 adenylate kinase; Pro 94.5 0.036 7.8E-07 53.8 3.8 29 371-399 3-31 (186)
326 cd00227 CPT Chloramphenicol (C 94.5 0.031 6.7E-07 53.6 3.3 26 371-396 4-29 (175)
327 PF08477 Miro: Miro-like prote 94.4 0.032 7E-07 49.2 3.1 23 371-393 1-23 (119)
328 COG4930 Predicted ATP-dependen 94.4 0.16 3.4E-06 54.0 8.3 102 368-484 224-328 (683)
329 PRK02496 adk adenylate kinase; 94.3 0.037 8E-07 53.4 3.4 29 371-399 3-31 (184)
330 cd01120 RecA-like_NTPases RecA 94.3 0.03 6.4E-07 51.9 2.6 24 371-394 1-24 (165)
331 PLN02200 adenylate kinase fami 94.3 0.043 9.4E-07 55.3 3.9 29 371-399 45-73 (234)
332 PTZ00202 tuzin; Provisional 94.2 0.04 8.6E-07 59.8 3.6 99 500-609 403-501 (550)
333 cd02020 CMPK Cytidine monophos 94.2 0.046 9.9E-07 50.1 3.7 30 372-401 2-31 (147)
334 PF05729 NACHT: NACHT domain 94.2 0.036 7.7E-07 51.7 3.0 22 372-393 3-24 (166)
335 COG4178 ABC-type uncharacteriz 94.2 0.036 7.7E-07 62.6 3.3 25 371-395 421-445 (604)
336 COG3638 ABC-type phosphate/pho 94.1 0.07 1.5E-06 53.2 4.9 50 337-395 7-56 (258)
337 PF13191 AAA_16: AAA ATPase do 94.1 0.032 6.8E-07 53.3 2.5 26 370-395 25-50 (185)
338 PRK13948 shikimate kinase; Pro 94.1 0.055 1.2E-06 52.4 4.1 31 371-401 12-42 (182)
339 PF00519 PPV_E1_C: Papillomavi 94.1 0.083 1.8E-06 56.3 5.7 94 371-486 264-361 (432)
340 PRK00279 adk adenylate kinase; 94.1 0.051 1.1E-06 53.9 4.0 31 371-401 2-32 (215)
341 PRK03731 aroL shikimate kinase 94.0 0.054 1.2E-06 51.5 3.9 30 371-400 4-33 (171)
342 COG1936 Predicted nucleotide k 94.0 0.034 7.4E-07 52.7 2.4 22 371-392 2-23 (180)
343 PRK06581 DNA polymerase III su 94.0 0.2 4.4E-06 50.3 7.9 128 371-531 17-159 (263)
344 TIGR01447 recD exodeoxyribonuc 94.0 0.041 8.8E-07 62.9 3.4 26 434-459 260-285 (586)
345 cd03222 ABC_RNaseL_inhibitor T 94.0 0.053 1.2E-06 52.3 3.7 83 371-459 27-116 (177)
346 PRK13946 shikimate kinase; Pro 93.9 0.06 1.3E-06 52.1 4.0 32 370-401 11-42 (184)
347 PHA02530 pseT polynucleotide k 93.9 0.055 1.2E-06 56.4 3.9 28 371-398 4-31 (300)
348 TIGR02322 phosphon_PhnN phosph 93.8 0.048 1E-06 52.2 3.2 24 371-394 3-26 (179)
349 COG1126 GlnQ ABC-type polar am 93.8 0.067 1.4E-06 52.7 4.1 39 345-392 13-51 (240)
350 PF01057 Parvo_NS1: Parvovirus 93.8 0.082 1.8E-06 54.4 5.0 147 371-563 115-261 (271)
351 PRK08233 hypothetical protein; 93.8 0.049 1.1E-06 52.1 3.2 24 371-394 5-28 (182)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.8 0.11 2.3E-06 48.3 5.3 82 371-459 28-115 (144)
353 PRK07276 DNA polymerase III su 93.7 0.2 4.4E-06 52.1 7.7 52 433-511 104-156 (290)
354 PRK14527 adenylate kinase; Pro 93.7 0.05 1.1E-06 52.9 3.1 24 371-394 8-31 (191)
355 PRK08939 primosomal protein Dn 93.7 0.046 9.9E-07 57.4 2.9 24 371-394 158-181 (306)
356 PRK14529 adenylate kinase; Pro 93.7 0.053 1.1E-06 54.3 3.1 28 371-398 2-29 (223)
357 PF13086 AAA_11: AAA domain; P 93.6 0.048 1E-06 53.8 2.8 22 372-393 20-41 (236)
358 cd01878 HflX HflX subfamily. 93.5 0.15 3.3E-06 49.7 6.2 25 368-392 40-64 (204)
359 cd04160 Arfrp1 Arfrp1 subfamil 93.5 0.13 2.9E-06 48.1 5.5 22 371-392 1-22 (167)
360 KOG2545|consensus 93.5 2.7 5.8E-05 45.2 15.3 206 368-620 308-523 (543)
361 PLN02459 probable adenylate ki 93.5 0.077 1.7E-06 54.2 4.1 33 370-402 30-62 (261)
362 PLN02674 adenylate kinase 93.5 0.07 1.5E-06 54.1 3.7 32 370-401 32-63 (244)
363 KOG0482|consensus 93.5 0.036 7.8E-07 60.4 1.6 45 45-93 13-57 (721)
364 TIGR03263 guanyl_kin guanylate 93.4 0.059 1.3E-06 51.6 2.9 25 371-395 3-27 (180)
365 PF13521 AAA_28: AAA domain; P 93.3 0.06 1.3E-06 50.8 2.8 21 372-392 2-22 (163)
366 TIGR00150 HI0065_YjeE ATPase, 93.2 0.085 1.8E-06 48.3 3.4 24 371-394 24-47 (133)
367 TIGR01420 pilT_fam pilus retra 93.2 0.16 3.5E-06 54.2 6.2 24 371-394 124-147 (343)
368 TIGR01618 phage_P_loop phage n 93.2 0.053 1.2E-06 54.1 2.2 21 370-390 13-33 (220)
369 PRK13889 conjugal transfer rel 93.1 0.059 1.3E-06 64.8 2.9 88 371-458 364-458 (988)
370 PF13555 AAA_29: P-loop contai 93.1 0.088 1.9E-06 41.5 3.0 23 371-393 25-47 (62)
371 PRK04040 adenylate kinase; Pro 93.1 0.09 1.9E-06 51.2 3.7 24 371-394 4-27 (188)
372 cd00071 GMPK Guanosine monopho 93.1 0.08 1.7E-06 48.7 3.2 24 372-395 2-25 (137)
373 cd04177 RSR1 RSR1 subgroup. R 93.0 0.079 1.7E-06 49.9 3.1 24 369-392 1-24 (168)
374 KOG0064|consensus 93.0 0.12 2.6E-06 56.8 4.7 27 369-395 508-534 (728)
375 PF12780 AAA_8: P-loop contain 93.0 0.27 5.8E-06 50.6 7.1 30 371-400 33-62 (268)
376 PRK00300 gmk guanylate kinase; 92.9 0.08 1.7E-06 51.8 3.2 24 371-394 7-30 (205)
377 PF06068 TIP49: TIP49 C-termin 92.9 0.069 1.5E-06 56.7 2.7 27 369-395 50-76 (398)
378 cd01130 VirB11-like_ATPase Typ 92.9 0.09 1.9E-06 50.9 3.4 24 371-394 27-50 (186)
379 TIGR01166 cbiO cobalt transpor 92.9 0.11 2.4E-06 50.3 4.1 24 371-394 20-43 (190)
380 cd02027 APSK Adenosine 5'-phos 92.9 0.079 1.7E-06 49.5 2.9 22 372-393 2-23 (149)
381 PF01926 MMR_HSR1: 50S ribosom 92.9 0.071 1.5E-06 47.1 2.4 21 371-391 1-21 (116)
382 PRK01184 hypothetical protein; 92.8 0.1 2.2E-06 50.2 3.7 23 371-394 3-25 (184)
383 cd04119 RJL RJL (RabJ-Like) su 92.8 0.084 1.8E-06 49.1 3.0 23 370-392 1-23 (168)
384 COG1116 TauB ABC-type nitrate/ 92.8 0.14 2.9E-06 51.6 4.5 24 371-394 31-54 (248)
385 cd04137 RheB Rheb (Ras Homolog 92.8 0.086 1.9E-06 50.2 3.0 23 370-392 2-24 (180)
386 PRK13851 type IV secretion sys 92.8 0.084 1.8E-06 56.3 3.2 26 370-395 163-188 (344)
387 COG3839 MalK ABC-type sugar tr 92.7 0.12 2.6E-06 54.8 4.2 23 371-393 31-53 (338)
388 COG1102 Cmk Cytidylate kinase 92.7 0.099 2.1E-06 49.1 3.2 31 372-402 3-33 (179)
389 cd03269 ABC_putative_ATPase Th 92.7 0.16 3.4E-06 50.0 5.0 24 371-394 28-51 (210)
390 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.7 0.15 3.3E-06 50.9 4.8 42 343-393 31-72 (224)
391 TIGR03574 selen_PSTK L-seryl-t 92.7 0.079 1.7E-06 53.8 2.8 23 372-394 2-24 (249)
392 PRK04182 cytidylate kinase; Pr 92.7 0.095 2.1E-06 49.9 3.2 29 371-399 2-30 (180)
393 cd04124 RabL2 RabL2 subfamily. 92.7 0.09 2E-06 49.2 3.0 22 370-391 1-22 (161)
394 PRK12339 2-phosphoglycerate ki 92.7 0.12 2.5E-06 50.8 3.8 27 371-397 5-31 (197)
395 PRK13826 Dtr system oriT relax 92.5 0.068 1.5E-06 64.7 2.4 84 371-459 399-494 (1102)
396 PRK13900 type IV secretion sys 92.5 0.1 2.2E-06 55.5 3.4 26 370-395 161-186 (332)
397 PF13479 AAA_24: AAA domain 92.5 0.092 2E-06 52.1 2.9 27 369-399 3-29 (213)
398 PRK05537 bifunctional sulfate 92.5 0.15 3.2E-06 58.2 4.9 24 371-394 394-417 (568)
399 smart00175 RAB Rab subfamily o 92.4 0.097 2.1E-06 48.6 2.9 23 370-392 1-23 (164)
400 PRK06547 hypothetical protein; 92.4 0.13 2.7E-06 49.4 3.6 24 371-394 17-40 (172)
401 TIGR02173 cyt_kin_arch cytidyl 92.4 0.11 2.5E-06 48.9 3.3 29 371-399 2-30 (171)
402 TIGR00235 udk uridine kinase. 92.4 0.1 2.2E-06 51.4 3.0 24 371-394 8-31 (207)
403 cd03281 ABC_MSH5_euk MutS5 hom 92.4 0.24 5.2E-06 49.2 5.7 21 371-391 31-51 (213)
404 TIGR00231 small_GTP small GTP- 92.3 0.1 2.2E-06 47.3 2.9 23 370-392 2-24 (161)
405 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.3 0.17 3.8E-06 50.0 4.7 24 371-394 32-55 (218)
406 cd00157 Rho Rho (Ras homology) 92.3 0.11 2.3E-06 48.8 3.0 23 370-392 1-23 (171)
407 cd00154 Rab Rab family. Rab G 92.3 0.11 2.4E-06 47.5 3.0 23 370-392 1-23 (159)
408 PRK05541 adenylylsulfate kinas 92.3 0.1 2.2E-06 49.9 2.8 25 370-394 8-32 (176)
409 PRK10875 recD exonuclease V su 92.3 0.1 2.2E-06 59.9 3.3 27 434-460 266-292 (615)
410 cd04113 Rab4 Rab4 subfamily. 92.2 0.11 2.4E-06 48.3 3.0 23 370-392 1-23 (161)
411 cd04138 H_N_K_Ras_like H-Ras/N 92.2 0.11 2.4E-06 47.9 3.0 23 370-392 2-24 (162)
412 PF00005 ABC_tran: ABC transpo 92.2 0.12 2.6E-06 46.9 3.2 24 371-394 13-36 (137)
413 COG4088 Predicted nucleotide k 92.2 0.098 2.1E-06 51.1 2.5 25 372-396 4-28 (261)
414 PF03193 DUF258: Protein of un 92.2 0.19 4.1E-06 47.6 4.5 22 371-392 37-58 (161)
415 cd04155 Arl3 Arl3 subfamily. 92.2 0.11 2.3E-06 49.0 2.9 24 369-392 14-37 (173)
416 PRK03846 adenylylsulfate kinas 92.2 0.095 2.1E-06 51.3 2.5 88 371-459 26-120 (198)
417 TIGR03608 L_ocin_972_ABC putat 92.1 0.19 4.1E-06 49.2 4.6 24 371-394 26-49 (206)
418 cd04136 Rap_like Rap-like subf 92.1 0.12 2.6E-06 48.0 3.1 22 370-391 2-23 (163)
419 cd01124 KaiC KaiC is a circadi 92.1 0.11 2.4E-06 49.7 3.0 21 372-392 2-22 (187)
420 cd03292 ABC_FtsE_transporter F 92.1 0.19 4.1E-06 49.6 4.6 24 371-394 29-52 (214)
421 cd01867 Rab8_Rab10_Rab13_like 92.1 0.12 2.5E-06 48.7 3.0 23 370-392 4-26 (167)
422 cd02023 UMPK Uridine monophosp 92.1 0.12 2.5E-06 50.5 3.1 22 372-393 2-23 (198)
423 cd03258 ABC_MetN_methionine_tr 92.0 0.17 3.7E-06 50.6 4.3 24 371-394 33-56 (233)
424 PF00406 ADK: Adenylate kinase 92.0 0.092 2E-06 48.9 2.1 22 374-395 1-22 (151)
425 cd01862 Rab7 Rab7 subfamily. 91.9 0.12 2.6E-06 48.5 2.8 23 370-392 1-23 (172)
426 cd01895 EngA2 EngA2 subfamily. 91.9 0.54 1.2E-05 43.6 7.3 23 370-392 3-25 (174)
427 KOG2170|consensus 91.8 0.056 1.2E-06 55.5 0.5 84 371-458 112-203 (344)
428 cd03261 ABC_Org_Solvent_Resist 91.8 0.23 5.1E-06 49.8 4.9 24 371-394 28-51 (235)
429 PRK13543 cytochrome c biogenes 91.8 0.2 4.4E-06 49.5 4.4 24 371-394 39-62 (214)
430 cd01131 PilT Pilus retraction 91.8 0.13 2.8E-06 50.4 3.0 24 371-394 3-26 (198)
431 PLN02165 adenylate isopentenyl 91.8 0.17 3.6E-06 53.5 3.9 31 371-401 45-75 (334)
432 cd04157 Arl6 Arl6 subfamily. 91.7 0.12 2.6E-06 48.0 2.5 22 371-392 1-22 (162)
433 PRK08356 hypothetical protein; 91.7 0.2 4.4E-06 48.9 4.2 22 370-391 6-27 (195)
434 PRK13540 cytochrome c biogenes 91.7 0.25 5.4E-06 48.3 4.9 24 371-394 29-52 (200)
435 PRK09825 idnK D-gluconate kina 91.7 0.18 3.9E-06 48.5 3.8 25 371-395 5-29 (176)
436 cd04101 RabL4 RabL4 (Rab-like4 91.7 0.14 3E-06 47.8 2.9 22 370-391 1-22 (164)
437 cd03265 ABC_DrrA DrrA is the A 91.6 0.23 5E-06 49.3 4.7 23 371-393 28-50 (220)
438 smart00173 RAS Ras subfamily o 91.6 0.14 3.1E-06 47.7 3.0 22 371-392 2-23 (164)
439 PRK10247 putative ABC transpor 91.6 0.24 5.3E-06 49.4 4.9 24 371-394 35-58 (225)
440 PRK05480 uridine/cytidine kina 91.6 0.14 3E-06 50.4 3.1 24 370-393 7-30 (209)
441 cd03301 ABC_MalK_N The N-termi 91.6 0.22 4.9E-06 49.0 4.5 24 371-394 28-51 (213)
442 cd03262 ABC_HisP_GlnQ_permease 91.6 0.22 4.7E-06 49.1 4.4 24 371-394 28-51 (213)
443 TIGR02315 ABC_phnC phosphonate 91.6 0.19 4E-06 50.7 4.0 24 371-394 30-53 (243)
444 PRK08485 DNA polymerase III su 91.6 1 2.2E-05 44.0 8.8 50 434-510 55-105 (206)
445 PRK13538 cytochrome c biogenes 91.6 0.24 5.1E-06 48.6 4.6 24 371-394 29-52 (204)
446 TIGR03410 urea_trans_UrtE urea 91.6 0.22 4.8E-06 49.8 4.5 24 371-394 28-51 (230)
447 cd03296 ABC_CysA_sulfate_impor 91.6 0.24 5.3E-06 49.8 4.8 24 371-394 30-53 (239)
448 cd04156 ARLTS1 ARLTS1 subfamil 91.6 0.13 2.9E-06 47.6 2.7 22 371-392 1-22 (160)
449 cd04117 Rab15 Rab15 subfamily. 91.6 0.14 3E-06 48.0 2.8 20 371-390 2-21 (161)
450 cd03216 ABC_Carb_Monos_I This 91.5 0.27 5.9E-06 46.5 4.8 25 371-395 28-52 (163)
451 COG3842 PotA ABC-type spermidi 91.5 0.21 4.5E-06 53.2 4.4 22 371-392 33-54 (352)
452 PRK00889 adenylylsulfate kinas 91.5 0.14 3E-06 48.9 2.9 24 371-394 6-29 (175)
453 COG4133 CcmA ABC-type transpor 91.5 0.24 5.3E-06 47.8 4.4 45 342-395 10-54 (209)
454 PLN02199 shikimate kinase 91.5 0.18 4E-06 52.2 3.8 31 371-401 104-134 (303)
455 cd00876 Ras Ras family. The R 91.5 0.15 3.2E-06 47.0 2.9 22 371-392 1-22 (160)
456 PRK14737 gmk guanylate kinase; 91.5 0.18 3.9E-06 49.0 3.6 26 370-395 5-30 (186)
457 PF00437 T2SE: Type II/IV secr 91.5 0.13 2.8E-06 52.9 2.8 27 370-396 128-154 (270)
458 smart00487 DEXDc DEAD-like hel 91.5 0.12 2.6E-06 48.9 2.4 23 371-393 26-49 (201)
459 cd04164 trmE TrmE (MnmE, ThdF, 91.4 0.15 3.2E-06 46.7 2.8 23 370-392 2-24 (157)
460 COG3267 ExeA Type II secretory 91.4 1.1 2.4E-05 45.4 9.0 192 371-621 53-262 (269)
461 cd02024 NRK1 Nicotinamide ribo 91.4 0.2 4.4E-06 48.7 3.9 23 372-394 2-24 (187)
462 cd04159 Arl10_like Arl10-like 91.4 0.13 2.9E-06 46.9 2.5 21 372-392 2-22 (159)
463 cd03263 ABC_subfamily_A The AB 91.4 0.23 5.1E-06 49.2 4.4 24 371-394 30-53 (220)
464 PRK11124 artP arginine transpo 91.4 0.26 5.5E-06 49.7 4.7 24 371-394 30-53 (242)
465 PRK11300 livG leucine/isoleuci 91.4 0.25 5.3E-06 50.2 4.6 24 371-394 33-56 (255)
466 cd01868 Rab11_like Rab11-like. 91.3 0.15 3.3E-06 47.6 2.8 23 370-392 4-26 (165)
467 TIGR02211 LolD_lipo_ex lipopro 91.3 0.27 5.8E-06 48.8 4.8 24 371-394 33-56 (221)
468 PRK11248 tauB taurine transpor 91.3 0.27 5.9E-06 50.2 4.9 24 371-394 29-52 (255)
469 cd00820 PEPCK_HprK Phosphoenol 91.3 0.26 5.7E-06 43.3 4.1 20 371-390 17-36 (107)
470 PRK13808 adenylate kinase; Pro 91.3 0.19 4E-06 53.2 3.7 31 371-401 2-32 (333)
471 TIGR02782 TrbB_P P-type conjug 91.3 0.16 3.5E-06 53.2 3.2 24 371-394 134-157 (299)
472 cd04145 M_R_Ras_like M-Ras/R-R 91.3 0.16 3.6E-06 47.1 3.0 23 370-392 3-25 (164)
473 cd04106 Rab23_lke Rab23-like s 91.3 0.16 3.4E-06 47.2 2.8 23 370-392 1-23 (162)
474 cd03224 ABC_TM1139_LivF_branch 91.2 0.26 5.6E-06 48.9 4.5 24 371-394 28-51 (222)
475 TIGR00017 cmk cytidylate kinas 91.2 0.21 4.6E-06 49.8 3.8 32 371-402 4-35 (217)
476 PRK13546 teichoic acids export 91.2 0.29 6.3E-06 50.3 5.0 24 371-394 52-75 (264)
477 cd03253 ABCC_ATM1_transporter 91.2 0.24 5.2E-06 49.7 4.3 24 371-394 29-52 (236)
478 PRK13539 cytochrome c biogenes 91.2 0.28 6E-06 48.3 4.7 24 371-394 30-53 (207)
479 PRK10895 lipopolysaccharide AB 91.2 0.29 6.3E-06 49.3 4.9 24 371-394 31-54 (241)
480 KOG0060|consensus 91.1 0.25 5.5E-06 55.0 4.6 25 370-394 462-486 (659)
481 cd01860 Rab5_related Rab5-rela 91.1 0.17 3.7E-06 47.0 3.0 23 370-392 2-24 (163)
482 cd03266 ABC_NatA_sodium_export 91.1 0.25 5.3E-06 48.9 4.3 24 371-394 33-56 (218)
483 TIGR02788 VirB11 P-type DNA tr 91.1 0.17 3.7E-06 53.2 3.3 25 371-395 146-170 (308)
484 TIGR02323 CP_lyasePhnK phospho 91.1 0.25 5.3E-06 50.2 4.3 24 371-394 31-54 (253)
485 cd01866 Rab2 Rab2 subfamily. 91.1 0.17 3.6E-06 47.8 2.9 23 370-392 5-27 (168)
486 TIGR02673 FtsE cell division A 91.1 0.25 5.4E-06 48.7 4.2 24 371-394 30-53 (214)
487 PRK14262 phosphate ABC transpo 91.1 0.28 6.1E-06 49.7 4.7 24 371-394 31-54 (250)
488 cd03268 ABC_BcrA_bacitracin_re 91.1 0.3 6.4E-06 48.0 4.7 24 371-394 28-51 (208)
489 cd02022 DPCK Dephospho-coenzym 91.0 0.24 5.3E-06 47.6 4.0 29 372-401 2-30 (179)
490 cd04139 RalA_RalB RalA/RalB su 91.0 0.17 3.8E-06 46.8 2.9 22 371-392 2-23 (164)
491 cd01898 Obg Obg subfamily. Th 91.0 0.16 3.5E-06 47.6 2.7 22 371-392 2-23 (170)
492 cd04140 ARHI_like ARHI subfami 91.0 0.18 3.9E-06 47.3 3.1 22 370-391 2-23 (165)
493 cd03234 ABCG_White The White s 91.0 0.2 4.3E-06 50.0 3.5 24 371-394 35-58 (226)
494 PRK14235 phosphate transporter 91.0 0.34 7.4E-06 49.8 5.3 24 371-394 47-70 (267)
495 PF00485 PRK: Phosphoribulokin 91.0 0.15 3.2E-06 49.7 2.5 24 372-395 2-25 (194)
496 cd03227 ABC_Class2 ABC-type Cl 91.0 0.16 3.5E-06 48.0 2.7 22 371-392 23-44 (162)
497 TIGR02528 EutP ethanolamine ut 91.0 0.16 3.5E-06 46.2 2.6 22 371-392 2-23 (142)
498 TIGR00960 3a0501s02 Type II (G 91.0 0.31 6.7E-06 48.2 4.8 24 371-394 31-54 (216)
499 KOG0058|consensus 91.0 0.29 6.4E-06 55.9 5.0 23 371-393 496-518 (716)
500 PRK14250 phosphate ABC transpo 91.0 0.3 6.4E-06 49.3 4.7 24 371-394 31-54 (241)
No 1
>KOG0482|consensus
Probab=100.00 E-value=1.9e-121 Score=948.93 Aligned_cols=528 Identities=65% Similarity=1.047 Sum_probs=500.2
Q ss_pred hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccH--HHHHHHHHcHHHHHHHHHHHHHHhcCCC
Q psy11213 87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNS--DLATNIQNNTRRYVQMFSELIFELLPDY 164 (621)
Q Consensus 87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~--~La~~i~~np~~~l~l~~~av~el~~~~ 164 (621)
+.+++||.+|..+++.| +|+++|+++++++..+++||++||.+|+. +|..+|.+|..+|.++|.+++++++|.+
T Consensus 15 ~~~~~fl~e~~e~~~~~----kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~ 90 (721)
T KOG0482|consen 15 NKIKKFLDEFYEDNELG----KYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEP 90 (721)
T ss_pred HHHHHHHHhhhccCchh----HHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44588888887654433 89999999999999999999999999985 7999999999999999999999999998
Q ss_pred cccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEE
Q psy11213 165 KSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVV 244 (621)
Q Consensus 165 ~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV 244 (621)
.......+|++|+++.|+...+.. .+|. ..++.+.+|++|+++|+++|+|++..++..+|+++++|||+||+++|||
T Consensus 91 ~~~~~~~~d~lDv~~~qR~~~~~~--~~p~-~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIV 167 (721)
T KOG0482|consen 91 TGEIPYGDDVLDVYMEQRLMRNET--RDPE-LEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIV 167 (721)
T ss_pred ccccccCccHHHHHHHHHHHhccc--cCcc-ccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEE
Confidence 865555589999999999876542 2444 4666788999999999999999999999999999999999999999999
Q ss_pred EEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCC
Q psy11213 245 TRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVG 324 (621)
Q Consensus 245 ~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g 324 (621)
||+|+|||.+.+++|.|..||+++||++++..|+|+..||+++|..++.+|.++++...|+|+.||++|+||..+++|.|
T Consensus 168 TR~S~VKP~m~VatYtCd~CGaE~yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG 247 (721)
T KOG0482|consen 168 TRVSDVKPSMVVATYTCDQCGAETYQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVG 247 (721)
T ss_pred EeccccccceEEEEEecccccHhhhccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeecccccccccccCceEEEeeeeeccccCCceeeec-------------------------------------
Q psy11213 325 NIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQ------------------------------------- 367 (621)
Q Consensus 325 ~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~------------------------------------- 367 (621)
++||+++|++.++++.+|.|||.|.|+||+.|....||+....
T Consensus 248 ~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~~~~ 327 (721)
T KOG0482|consen 248 HIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKTGELEPEELELI 327 (721)
T ss_pred ccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhccccccccccccccHHHHHHh
Confidence 9999999999999999999999999999999988777654331
Q ss_pred ----------------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 368 ----------------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 368 ----------------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
|+|||+|+||||++||||++++.+++||++||+|
T Consensus 328 ~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG 407 (721)
T KOG0482|consen 328 AEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG 407 (721)
T ss_pred hcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC
Confidence 9999999999999999999999999999999999
Q ss_pred CCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEe
Q psy11213 402 RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILA 481 (621)
Q Consensus 402 ~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viA 481 (621)
+|+|++||||++.+|+.+|+.++|+||||+||+|||||||||||.+.+|.+|||+||||+|||+||||.++|||||+|+|
T Consensus 408 rGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 408 RGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred CCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 482 AANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 482 a~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
||||.+|||||..++..|++||+||||||||++++.|.||.+.|..+|+||...|+++.+++...++++++.+|.||.+|
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a 567 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA 567 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 562 KGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 562 r~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
|+.+|.++++..++|...|++||+.++...+...+|+|.|.+++|||.|+|||++++.|+
T Consensus 568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~ 627 (721)
T KOG0482|consen 568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVE 627 (721)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999999999999998777888899999999999999999999999885
No 2
>KOG0480|consensus
Probab=100.00 E-value=1.7e-105 Score=851.67 Aligned_cols=490 Identities=35% Similarity=0.620 Sum_probs=441.6
Q ss_pred hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhc-ccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213 87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEE-FNSDLATNIQNNTRRYVQMFSELIFELLPDYK 165 (621)
Q Consensus 87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~-fd~~La~~i~~np~~~l~l~~~av~el~~~~~ 165 (621)
.....||++|.+. .++++|...+..+...+..+|.||+.||.. |++.|+..|.+||+++++.+..|+..++....
T Consensus 27 e~~~~Fle~~~~~----~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d~~ 102 (764)
T KOG0480|consen 27 EEFLQFLESFKVQ----AGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKDWS 102 (764)
T ss_pred HHHHHHHHHhhcc----ccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHccc
Confidence 3457888888763 236789999999999999999999999999 99999999999999999999999998774311
Q ss_pred ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213 166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT 245 (621)
Q Consensus 166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~ 245 (621)
. .+..+.+.|+++|.+++. ...+|+|+++.||+||+|.|+|+
T Consensus 103 ~------------------------------------~~~~~~~~~~v~f~nlp~--~~~irdlra~~iG~Lv~isGtVv 144 (764)
T KOG0480|consen 103 T------------------------------------NSGALVKKIYVRFYNLPT--RHKIRDLRAARIGKLVRISGTVV 144 (764)
T ss_pred c------------------------------------cccccceeEEEEEecccc--ccccccccHhhhcceEEEEEEEE
Confidence 1 011233578899998885 47899999999999999999999
Q ss_pred EecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCC
Q psy11213 246 RSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGN 325 (621)
Q Consensus 246 r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~ 325 (621)
|+|+|+|.+.+++|.|.+||..+...+++++|++|..||++.|.+. ..|.++.+.|.|.|||+|+|||..++.|.|.
T Consensus 145 Rts~VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt~C~np~C~nr---r~f~l~~~~s~f~D~QkIrIQE~~~E~p~Gs 221 (764)
T KOG0480|consen 145 RTSPVRPELTKMTFLCEKCGTVIRNVEQQFKYTEPTKCPNPVCSNR---RSFTLDRSSSRFLDWQKIRIQELQAEIPRGS 221 (764)
T ss_pred EeecccceeeeeEEEHhhCCCeeccchhcCccCCCccCCCccccCC---ceeeeecccceeeeeeeeehhhhhhhCCCCC
Confidence 9999999999999999999999888888899999999999988743 3588899999999999999999999999999
Q ss_pred cccceeeecccccccccccCceEEEeeeeecccc------CC--------------ceeeec------------------
Q psy11213 326 IPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR------TG--------------FRQVTQ------------------ 367 (621)
Q Consensus 326 ~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~------~~--------------~~~~~~------------------ 367 (621)
+||+++|+|++|+|++++|||++.++|++..... .| +.....
T Consensus 222 iPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~ 301 (764)
T KOG0480|consen 222 IPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQ 301 (764)
T ss_pred CCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcc
Confidence 9999999999999999999999999999852210 00 000000
Q ss_pred ---------------------------------------------------------------------------CcccE
Q psy11213 368 ---------------------------------------------------------------------------GNINI 372 (621)
Q Consensus 368 ---------------------------------------------------------------------------g~i~v 372 (621)
|+|||
T Consensus 302 ~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv 381 (764)
T KOG0480|consen 302 STLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINV 381 (764)
T ss_pred cccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceE
Confidence 99999
Q ss_pred EEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhh
Q psy11213 373 CLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTA 452 (621)
Q Consensus 373 LL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~ 452 (621)
|++|||||||||+|++++..+||++|++|+.+|++|||+++++|+.+|+|+++||||++||+|||||||||||+..++.+
T Consensus 382 ~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvA 461 (764)
T KOG0480|consen 382 CIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVA 461 (764)
T ss_pred EEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHH
Q psy11213 453 IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 453 L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~i 532 (621)
||||||||+|||+|||+.++||||++|||||||..||||..+++.+|+++++||||||||+|++.|.+++..|..||+||
T Consensus 462 ihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hI 541 (764)
T KOG0480|consen 462 IHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHI 541 (764)
T ss_pred HHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC--CCCCccCHHHHHHHHHHHHH
Q psy11213 533 TYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS--RDMSYTSARNLLAILRLSTA 610 (621)
Q Consensus 533 l~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~--~~~~~~t~R~leslirla~A 610 (621)
++.|..-.........++.+.+++||.|||+..|+++.+|.+.|.+.|..||+....+ .+++++|+||||||||||||
T Consensus 542 ld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA 621 (764)
T KOG0480|consen 542 LDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEA 621 (764)
T ss_pred HHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHH
Confidence 9998765444333458999999999999998899999999999999999999986332 34778999999999999999
Q ss_pred HHHhcCCCCCC
Q psy11213 611 LARLRLCDEFQ 621 (621)
Q Consensus 611 ~Akl~lr~~V~ 621 (621)
.||+++++.||
T Consensus 622 ~Ar~~~~devt 632 (764)
T KOG0480|consen 622 RARVECRDEVT 632 (764)
T ss_pred HHhhhhhhhcc
Confidence 99999999986
No 3
>KOG0477|consensus
Probab=100.00 E-value=3.4e-102 Score=821.25 Aligned_cols=508 Identities=35% Similarity=0.561 Sum_probs=450.1
Q ss_pred ccccchhhhhhhhhhhhhhHHHhhhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHH
Q psy11213 63 DNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNI 142 (621)
Q Consensus 63 ~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i 142 (621)
+-|+++|++|+++...|.+++ ..+++||++|.++ +|+.+|.+.|++|+..|..+|.|+|.||..-.+.||..+
T Consensus 142 ~~k~~s~~e~v~~~~~r~~i~---~~fk~fl~~y~d~----~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl 214 (854)
T KOG0477|consen 142 DIKGHSYREWVSMDGVRREIA---RRFKNFLREYVDE----NGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFL 214 (854)
T ss_pred HhhccchHHHHhccchhhHHH---HHHHHHHHHHhcc----cccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHh
Confidence 458899999999999988886 6679999999963 457789999999999999999999999999999999999
Q ss_pred HHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCC
Q psy11213 143 QNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGK 222 (621)
Q Consensus 143 ~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~ 222 (621)
.+.|...+++|++++.+++.... +.+ .+++ ..+++++..++ -
T Consensus 215 ~~ap~e~l~I~dr~a~~~v~~~~-----------------p~y---------------eri~----~~ihvris~lP--~ 256 (854)
T KOG0477|consen 215 PEAPEEMLEIFDRAALEVVLLHY-----------------PNY---------------ERIH----NEIHVRISDLP--V 256 (854)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC-----------------CCh---------------hhcc----cceeeeeecCC--c
Confidence 99999999999998887652210 000 1111 23566666665 4
Q ss_pred CcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCCCeeeeccc-ccccCCCCCCCCccccCCCCCCceeeec
Q psy11213 223 PTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPIS-SLSFTPLLMCPSEDCQVNKSGGRLYLQT 301 (621)
Q Consensus 223 ~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~-~~~~~~~~~Cp~~~C~~~~~~~~~~~~~ 301 (621)
...+|.||..|+|+||.+.|+||++|.|+|.+...+|.|.+||......+. +.....|..||+ |+ |.|||..+.
T Consensus 257 ~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~evkp~~C~~--cq---SkGpf~vn~ 331 (854)
T KOG0477|consen 257 CESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNSEVKPGSCPE--CQ---SKGPFEVNV 331 (854)
T ss_pred cccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCceeCCCCCcc--cc---CCCCCccch
Confidence 578999999999999999999999999999999999999999976432222 222234567996 87 568999999
Q ss_pred cCcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccCceEEEeeeeeccc------cCCceeeec--------
Q psy11213 302 RGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLL------RTGFRQVTQ-------- 367 (621)
Q Consensus 302 ~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~------~~~~~~~~~-------- 367 (621)
+++.|.+||+|+|||.|+.+|+|.+||+++|+|..||||.|+||+++.|+|||...+ ++||+.+..
T Consensus 332 e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN~kngFpvfatvi~ANhV~ 411 (854)
T KOG0477|consen 332 EETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLNTKNGFPVFATVIEANHVV 411 (854)
T ss_pred hhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecccccccccccCCccccceeheehhhh
Confidence 999999999999999999999999999999999999999999999999999997543 244443221
Q ss_pred ---------------------------------------------------------------------CcccEEEeCCC
Q psy11213 368 ---------------------------------------------------------------------GNINICLMGDP 378 (621)
Q Consensus 368 ---------------------------------------------------------------------g~i~vLL~G~P 378 (621)
|+|||||+|||
T Consensus 412 ~k~~~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDP 491 (854)
T KOG0477|consen 412 KKDGKFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDP 491 (854)
T ss_pred hhccccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCC
Confidence 99999999999
Q ss_pred CcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213 379 GVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVME 458 (621)
Q Consensus 379 GtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame 458 (621)
||||||+||++++.+||+++|+|.|+|++||||++.+++.+++|++|+|||||||+|||||||||||++.+|++||||||
T Consensus 492 GTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAME 571 (854)
T KOG0477|consen 492 GTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAME 571 (854)
T ss_pred CccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhcc
Q psy11213 459 QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKH 538 (621)
Q Consensus 459 ~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~ 538 (621)
||.|||+||||+++|++||+||||+||.+||||++.++.+|++|.+|+|||||+++++.|..|+..|.++|++++.+|..
T Consensus 572 QQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 572 QQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred hcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCC------------CCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy11213 539 SRQPP------------TELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL 605 (621)
Q Consensus 539 ~~~~~------------~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesli 605 (621)
..... .....++++.||+||.|||.+ .|+|.+...+++...|.+||+.+... .+.++|+|++|++|
T Consensus 652 ~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~t-Gs~piTvRHieS~i 730 (854)
T KOG0477|consen 652 HHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMAT-GSLPITVRHIESMI 730 (854)
T ss_pred cCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhcccc-CCchhhHHHHHHHH
Confidence 43221 112468999999999999998 99999999999999999999998765 36779999999999
Q ss_pred HHHHHHHHhcCCCCCC
Q psy11213 606 RLSTALARLRLCDEFQ 621 (621)
Q Consensus 606 rla~A~Akl~lr~~V~ 621 (621)
|+++|||||+||+.|+
T Consensus 731 r~seAhArm~Lr~~V~ 746 (854)
T KOG0477|consen 731 RMSEAHARMHLREYVT 746 (854)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999985
No 4
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-100 Score=841.78 Aligned_cols=474 Identities=42% Similarity=0.711 Sum_probs=416.8
Q ss_pred hhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHH
Q psy11213 106 IFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL 185 (621)
Q Consensus 106 ~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~ 185 (621)
...|.+++ .+......+++|++.|+..|+++||..+.++|.+++++|+++++++......
T Consensus 16 ~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~------------------- 75 (682)
T COG1241 16 ILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFP------------------- 75 (682)
T ss_pred HHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCc-------------------
Confidence 34566654 3434444599999999999999999999999999999999999988743210
Q ss_pred hhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCC
Q psy11213 186 EQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG 265 (621)
Q Consensus 186 e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg 265 (621)
.++.. .+.|+++|.+.+. ..++|+|+++|+||||+|+|+|+|+|.|+|++++++|.|++||
T Consensus 76 ----------------~~~~~-~~~~~~~~~~~~~--~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg 136 (682)
T COG1241 76 ----------------EVDRS-LKKIHVRFKNLPN--RLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCG 136 (682)
T ss_pred ----------------ccccc-ccceEEEecCCcC--CcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCC
Confidence 00000 1468899998875 4589999999999999999999999999999999999999999
Q ss_pred CeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccC
Q psy11213 266 AETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPG 345 (621)
Q Consensus 266 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G 345 (621)
+.+.+.+....+.+|..|++ |. ....++|.++.+.|.|+|||+|+|||.|+.+|.|++|++++|+|++|++++++||
T Consensus 137 ~~~~~~~~~~~~~~~~~C~~--~~-~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pG 213 (682)
T COG1241 137 REVEVEQSEFRVEPPRECEN--CG-KFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPG 213 (682)
T ss_pred CEEEEEeccccccCCccCCC--cc-ccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCC
Confidence 99998888777888889997 62 2245689999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeeecccc-C------C--ceeee----------------c---------------------------------
Q psy11213 346 DHVSVSGIFLPLLR-T------G--FRQVT----------------Q--------------------------------- 367 (621)
Q Consensus 346 ~~v~v~Gil~~~~~-~------~--~~~~~----------------~--------------------------------- 367 (621)
|+|.|+||+..... . + |.... +
T Consensus 214 drV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~ 293 (682)
T COG1241 214 DRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDKREEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHED 293 (682)
T ss_pred CEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccchhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHH
Confidence 99999999864321 0 0 11000 0
Q ss_pred ------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee
Q psy11213 368 ------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV 423 (621)
Q Consensus 368 ------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~ 423 (621)
|+|||||+||||||||||++++++.+||++|++|+++|++||||++++|+.+|+|+
T Consensus 294 VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~ 373 (682)
T COG1241 294 VKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWV 373 (682)
T ss_pred HHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEE
Confidence 88999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP 503 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~ 503 (621)
+++||||+||+|||||||||||++.++++||||||||+|+|+||||+++|||||+|+|||||.+||||+++++.+|++||
T Consensus 374 LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~ 453 (682)
T COG1241 374 LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLP 453 (682)
T ss_pred EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCC-------CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHH
Q psy11213 504 AALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPT-------ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEH 575 (621)
Q Consensus 504 ~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~-------~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~ 575 (621)
++|||||||+|++.|.||++.|+.+|+|++..|........ ....-+.++||+||.|||++ .|.++++|.+.
T Consensus 454 ~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~ 533 (682)
T COG1241 454 APLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREE 533 (682)
T ss_pred hhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHH
Confidence 99999999999999999999999999999999965432211 00111688999999999997 89999999999
Q ss_pred HHHHHHHHHHHhhc--CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 576 IVKAYTELRKVARN--SRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 576 l~~~y~~lR~~~~~--~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
|.++|++||+.... .....++|+||||++||||+|||||+|++.|+
T Consensus 534 l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~ 581 (682)
T COG1241 534 LEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVE 581 (682)
T ss_pred HHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999996421 33467899999999999999999999999986
No 5
>KOG0478|consensus
Probab=100.00 E-value=5.5e-100 Score=815.10 Aligned_cols=504 Identities=38% Similarity=0.639 Sum_probs=451.4
Q ss_pred eeeeccCCccceehhh--------hHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhhHHHhhhhHHHHHHhccccc
Q psy11213 29 TVSVPTLSSIFQLVIY--------FSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKID 100 (621)
Q Consensus 29 ~~~~~~~~~~~~~~~~--------~k~~~~~fl~~f~~~~~~~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl~~F~~~~ 100 (621)
...+++.++.+++||| |++.|+.||.+|-- +|.
T Consensus 109 ~~~~~~~~~~~~~~Iwgt~v~iqe~~~~F~~fl~rf~~---------------------------~d~------------ 149 (804)
T KOG0478|consen 109 IREVQEVGNEPALVIWGTNVNIQECPENFDDFLRRFRG---------------------------IDP------------ 149 (804)
T ss_pred eeeeeecCCcceEEEEeeEEEHHhhhhHHHHHHHhcCC---------------------------CCc------------
Confidence 3455666778999999 89999999999921 111
Q ss_pred ccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHH
Q psy11213 101 KDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIE 180 (621)
Q Consensus 101 ~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~ 180 (621)
....|++.|.+|...+...+++|..||..|+.+||..+..+|.+.++.|..++++++++...
T Consensus 150 ----~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~~~e~~~-------------- 211 (804)
T KOG0478|consen 150 ----LCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEIVLERYV-------------- 211 (804)
T ss_pred ----cchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHHHHhhcc--------------
Confidence 14579999999999999999999999999999999999999999999999999998765210
Q ss_pred HHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEE
Q psy11213 181 HRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYT 260 (621)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~ 260 (621)
..+ ..-+++++|.+..++.+||+|++++|+|||+|+|+|+|+|++.|.++++.|+
T Consensus 212 ------------------------~~~-~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFr 266 (804)
T KOG0478|consen 212 ------------------------LEI-LEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFR 266 (804)
T ss_pred ------------------------ccc-hhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhh
Confidence 000 0125677888888999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeeccccccc
Q psy11213 261 CDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTR 340 (621)
Q Consensus 261 C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~ 340 (621)
|..|++.+..++..+.+..|..|+ +|...+ .|.+.++.|.|.|.|.||+||.|+.+|.|++|+++.+.+++||||
T Consensus 267 C~vC~~~~~ve~drg~i~eP~~C~--~C~~~~---~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD 341 (804)
T KOG0478|consen 267 CSVCGHEIAVESDRGRIKEPMLCK--ECGTTN---SFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVD 341 (804)
T ss_pred hhhcCceEEEEeecCccCCCcccc--cccCcc---cceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhh
Confidence 999999999998888899999998 498543 477889999999999999999999999999999999999999999
Q ss_pred ccccCceEEEeeeeecccc----------CCcee---------e-----------e--------------c---------
Q psy11213 341 QVVPGDHVSVSGIFLPLLR----------TGFRQ---------V-----------T--------------Q--------- 367 (621)
Q Consensus 341 ~~~~G~~v~v~Gil~~~~~----------~~~~~---------~-----------~--------------~--------- 367 (621)
+++|||+|.||||+.+..- +-|+. . . .
T Consensus 342 ~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~ 421 (804)
T KOG0478|consen 342 KVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYE 421 (804)
T ss_pred ccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcCccHHH
Confidence 9999999999999964321 00000 0 0 0
Q ss_pred ---------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcccc
Q psy11213 368 ---------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVG 408 (621)
Q Consensus 368 ---------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~g 408 (621)
|+|||||||||||||||||+++++++||++||+|+++|++|
T Consensus 422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavG 501 (804)
T KOG0478|consen 422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVG 501 (804)
T ss_pred HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhc
Confidence 77999999999999999999999999999999999999999
Q ss_pred ceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC
Q psy11213 409 LTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG 488 (621)
Q Consensus 409 Lta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g 488 (621)
||+++.+|+.+++|+++.||||+||+|||||||||||++..|+.|||+||||+++|+|||+.++|||||+|||||||.++
T Consensus 502 LTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 502 LTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCC
Q psy11213 489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPT 567 (621)
Q Consensus 489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ 567 (621)
+||+++++.+|++||++|||||||+|+++|.+|+..|+.|+.|++..|.... .......++...|+.||.||++. +|.
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~-~~~~~~~~d~~~lr~yi~yArk~i~p~ 660 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETG-EKQGSEAIDMNLLRDYIRYARKNIHPA 660 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhccccc-ccchhHHHhHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999886544 33456678999999999999997 999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 568 VPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 568 ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+++++.+.+...|+.+|+.....+ ....|+||+|+|+|++|||||+++++.|+
T Consensus 661 l~~ea~~~l~~ayvd~rk~~~~~~-~itat~rQlesLiRlsEahak~r~s~~ve 713 (804)
T KOG0478|consen 661 LSPEASQALIQAYVDMRKIGEGAG-QITATPRQLESLIRLSEAHAKMRLSNRVE 713 (804)
T ss_pred ccHHHHHHHHHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999865442 45578999999999999999999999885
No 6
>KOG0481|consensus
Probab=100.00 E-value=2.6e-98 Score=777.27 Aligned_cols=492 Identities=36% Similarity=0.617 Sum_probs=431.5
Q ss_pred hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213 86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK 165 (621)
Q Consensus 86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~ 165 (621)
+.-+++|+++|..+ ..++|+++|++.....+++|+|+++||.+||.+|+..|...|.+++++|++|+.++...+.
T Consensus 29 ~~~fkefir~f~~~-----~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i~ 103 (729)
T KOG0481|consen 29 KTKFKEFIRQFRTG-----TDFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEIT 103 (729)
T ss_pred HHHHHHHHHHhccc-----cccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhhc
Confidence 56789999999863 2489999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213 166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT 245 (621)
Q Consensus 166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~ 245 (621)
... +.+ .+...++||.+ .++.++.+||+|+++|+.|||+|.|||+
T Consensus 104 ~~~------------------------~~~---------E~~~~d~Qv~L--~sda~p~~iR~l~s~~vsklVki~GIii 148 (729)
T KOG0481|consen 104 RPR------------------------PSG---------EEVLHDIQVLL--TSDANPISIRQLKSDHVSKLVKISGIII 148 (729)
T ss_pred CCC------------------------cCC---------CccceeeEEEE--ecCCCcccHhHhhhHhhhhheeeccEEE
Confidence 211 100 12234566654 4667899999999999999999999999
Q ss_pred EecccceeeeEEEEEecCCCCeeee-ccccc--ccCCCCCCC-----CccccCCCCCCceeeeccCcccchhhhhhhhcc
Q psy11213 246 RSTEVKPLMTVATYTCDMCGAETYQ-PISSL--SFTPLLMCP-----SEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEH 317 (621)
Q Consensus 246 r~s~v~p~~~~~~f~C~~Cg~~~~~-~~~~~--~~~~~~~Cp-----~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~ 317 (621)
.+|.|+.+.+.....|..|.+.... ....+ .+.-|..|. .+.|. ..||.+.+++|+|+|+|.+|+||.
T Consensus 149 aAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp----~DPyii~pdks~~vD~QtLKLQE~ 224 (729)
T KOG0481|consen 149 AASAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCP----LDPYIIMPDKSKCVDQQTLKLQEL 224 (729)
T ss_pred EeeeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCC----CCCEEEcccccceeehhheehhhC
Confidence 9999999999999999999986422 22211 355677887 34565 347889999999999999999999
Q ss_pred cCCCCCCCcccceeeecccccccccccCceEEEeeeeecccc----CC----------cee------------------e
Q psy11213 318 SDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR----TG----------FRQ------------------V 365 (621)
Q Consensus 318 ~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~----~~----------~~~------------------~ 365 (621)
|+.+|.|++||++..++++.|++++.||.+|.|.|||..... ++ |-. +
T Consensus 225 pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~f 304 (729)
T KOG0481|consen 225 PEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMF 304 (729)
T ss_pred cccCCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccC
Confidence 999999999999999999999999999999999999853210 00 000 0
Q ss_pred ec--------------------------------------------------------CcccEEEeCCCCcchhHHHHHH
Q psy11213 366 TQ--------------------------------------------------------GNINICLMGDPGVAKSQLLSYI 389 (621)
Q Consensus 366 ~~--------------------------------------------------------g~i~vLL~G~PGtGKS~ll~~i 389 (621)
.. |+|||||.|||||+|||||+++
T Consensus 305 t~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 305 TPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred ChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHH
Confidence 00 9999999999999999999999
Q ss_pred HhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe
Q psy11213 390 ERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI 469 (621)
Q Consensus 390 a~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi 469 (621)
.+.+|-++||+|+|+|++||||++.+|+.+.+|.+|+||+||||||||||||||||.+++|.+||||||||||+|+|||+
T Consensus 385 EkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGI 464 (729)
T KOG0481|consen 385 EKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI 464 (729)
T ss_pred HhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCC--C---C
Q psy11213 470 MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQP--P---T 544 (621)
Q Consensus 470 ~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~--~---~ 544 (621)
+++||.||+|+|||||.+||||..++..+|+++.+.+|||||+||++.|..+++.|..||+|+++.|.+.... . .
T Consensus 465 TT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~ 544 (729)
T KOG0481|consen 465 TTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEE 544 (729)
T ss_pred eeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999863221 1 2
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhc------CCCCCccCHHHHHHHHHHHHHHHHhcCC
Q psy11213 545 ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARN------SRDMSYTSARNLLAILRLSTALARLRLC 617 (621)
Q Consensus 545 ~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~------~~~~~~~t~R~leslirla~A~Akl~lr 617 (621)
....++.+.||+||.|||.. .|.||++|.+.|...|+.+|+.... .....|+|+||||++||++|++|||+|+
T Consensus 545 ~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls 624 (729)
T KOG0481|consen 545 NEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELS 624 (729)
T ss_pred CCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCC
Confidence 45679999999999999988 9999999999999999999986432 2346789999999999999999999999
Q ss_pred CCCC
Q psy11213 618 DEFQ 621 (621)
Q Consensus 618 ~~V~ 621 (621)
..+|
T Consensus 625 ~~at 628 (729)
T KOG0481|consen 625 PFAT 628 (729)
T ss_pred cccc
Confidence 8764
No 7
>KOG0479|consensus
Probab=100.00 E-value=8.4e-97 Score=775.40 Aligned_cols=476 Identities=37% Similarity=0.575 Sum_probs=419.8
Q ss_pred hhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHH
Q psy11213 106 IFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLL 185 (621)
Q Consensus 106 ~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~ 185 (621)
...|++.|.+|.+.+...|.|+++||..|++++|..|+.||.++++.|++|+.++....+. .+.
T Consensus 27 ~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~----------~~~------ 90 (818)
T KOG0479|consen 27 ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRIDD----------VYA------ 90 (818)
T ss_pred hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcccc----------hhh------
Confidence 4589999999999999999999999999999999999999999999999999988754320 110
Q ss_pred hhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCC
Q psy11213 186 EQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCG 265 (621)
Q Consensus 186 e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg 265 (621)
.....|.|.|.+.++.+.+++|.|.+.|+|++|+++||||+||-|+|++.+.++.|+..+
T Consensus 91 --------------------~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~ 150 (818)
T KOG0479|consen 91 --------------------KVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATN 150 (818)
T ss_pred --------------------hhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccC
Confidence 012358899999999999999999999999999999999999999999999999999998
Q ss_pred Ceeeeccccc----ccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCCCcccceeeecccccccc
Q psy11213 266 AETYQPISSL----SFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQ 341 (621)
Q Consensus 266 ~~~~~~~~~~----~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~ 341 (621)
...+...... .+......|.+. ..++++......|.|.|+|.|.|||+||..|+|++||+++|++.+||||+
T Consensus 151 ~~~~r~Y~D~T~~~~~p~~svYPT~D----e~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~ 226 (818)
T KOG0479|consen 151 KFHERDYRDATMLTTLPTGSVYPTRD----EDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDR 226 (818)
T ss_pred cchhhhhcchheecccccCCcCCccC----CCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEeccccccc
Confidence 7654433221 111112345322 23567888999999999999999999999999999999999999999999
Q ss_pred cccCceEEEeeeeecccc--C-----Cceeeec-----------------------------------------------
Q psy11213 342 VVPGDHVSVSGIFLPLLR--T-----GFRQVTQ----------------------------------------------- 367 (621)
Q Consensus 342 ~~~G~~v~v~Gil~~~~~--~-----~~~~~~~----------------------------------------------- 367 (621)
|+|||+|.|.|+|.++-. + .|+...-
T Consensus 227 ~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH 306 (818)
T KOG0479|consen 227 VKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGH 306 (818)
T ss_pred CCCCCeeEEEEEEeeccCccCCcccceeEEEEEeccHHhhcccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccH
Confidence 999999999999976532 2 2332110
Q ss_pred --------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc
Q psy11213 368 --------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE 421 (621)
Q Consensus 368 --------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~ 421 (621)
|+|||||+|||.|+||||||++.+.+|+++-|+|.|+|++||||++..|+.+|+
T Consensus 307 ~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGE 386 (818)
T KOG0479|consen 307 DYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGE 386 (818)
T ss_pred HHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccch
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccC
Q psy11213 422 MVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQ 501 (621)
Q Consensus 422 ~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~ 501 (621)
..+|+||+||||+||+||||||||++-+|.+|||+||||+++|+||||.++|||||+|||||||.+|+||.+++..+|+.
T Consensus 387 RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIg 466 (818)
T KOG0479|consen 387 RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIG 466 (818)
T ss_pred hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCC--------C------------------------------
Q psy11213 502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQP--------P------------------------------ 543 (621)
Q Consensus 502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~--------~------------------------------ 543 (621)
||.+|||||||+|++.|..|.+.|+.|+.|+++.|...... .
T Consensus 467 LpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg 546 (818)
T KOG0479|consen 467 LPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHG 546 (818)
T ss_pred CcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhc
Confidence 99999999999999999999999999999999998542110 0
Q ss_pred ----CCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhc--CCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213 544 ----TELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARN--SRDMSYTSARNLLAILRLSTALARLRL 616 (621)
Q Consensus 544 ----~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~--~~~~~~~t~R~leslirla~A~Akl~l 616 (621)
...+.++.+++|+||.|||+. .|+|++++.++|.+.|..||+.... .....++|+|+||.|||||.||||+++
T Consensus 547 ~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRl 626 (818)
T KOG0479|consen 547 KAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARL 626 (818)
T ss_pred cccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 113457899999999999996 9999999999999999999987432 234678999999999999999999999
Q ss_pred CCCCC
Q psy11213 617 CDEFQ 621 (621)
Q Consensus 617 r~~V~ 621 (621)
++.|+
T Consensus 627 Sk~V~ 631 (818)
T KOG0479|consen 627 SKVVE 631 (818)
T ss_pred cceee
Confidence 99986
No 8
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=8.6e-92 Score=792.92 Aligned_cols=498 Identities=28% Similarity=0.445 Sum_probs=418.9
Q ss_pred hhHHHHHHhcccc-------cccC----cchhchHHHHHHHHHcC----------CcEEEEechhhhcccHHHHHHHHHc
Q psy11213 87 DLDDEFLIEFVKI-------DKDD----NKIFKYSKQLSKLAHRE----------QVAIYIDLDDVEEFNSDLATNIQNN 145 (621)
Q Consensus 87 ~~~~~Fl~~F~~~-------~~~~----~~~~~Y~~~i~~~~~~~----------~~~l~Vd~~dL~~fd~~La~~i~~n 145 (621)
+.+-+||++|.+. +++- .....|..+|.+|+..+ .++|+||++||..|++.||++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~~~l~~~ 169 (915)
T PTZ00111 90 ERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLYKLLVTF 169 (915)
T ss_pred HHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHHHHHHHC
Confidence 5667777777441 1111 13567999999999876 3799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcc
Q psy11213 146 TRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTP 225 (621)
Q Consensus 146 p~~~l~l~~~av~el~~~~~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ 225 (621)
|.+++++|++++.+++..+... +. +. ..+..+ ...++|++.+.+ ...+
T Consensus 170 P~e~i~~~e~~l~~~~~~~~~~-------------~~----------~~------~~~~~~-~~~~~vr~~n~~--~~~~ 217 (915)
T PTZ00111 170 PADCIAELDKVLVKLFNELLSK-------------HY----------SD------LSLENN-SFFPRARLMNKP--VSDC 217 (915)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-------------cc----------cc------chhccc-cceEEEEEeCCC--CCCC
Confidence 9999999999998875431100 00 00 000000 012467776654 5689
Q ss_pred cccccccCCCcEEEEEEEEEEecccceeeeEEEEEecC-----------CCCeeeecccccccCCCCCCCCccccCCCCC
Q psy11213 226 IREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDM-----------CGAETYQPISSLSFTPLLMCPSEDCQVNKSG 294 (621)
Q Consensus 226 ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~-----------Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~ 294 (621)
+|+|++.++||||+|+|+|+|+|.|+|++..++|+|.. ||+..+..+..+.+.+|..||+ |++ .
T Consensus 218 iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~~--C~~---~ 292 (915)
T PTZ00111 218 VGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCNE--CNS---K 292 (915)
T ss_pred cccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcccCCCCCCC--CCC---C
Confidence 99999999999999999999999999999999999986 7766555556678888889985 873 4
Q ss_pred CceeeeccCcccchhhhhhhhcccCCCCCCCcc--------------------cceeeecccccccccccCceEEEeeee
Q psy11213 295 GRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIP--------------------RGITVLCRGENTRQVVPGDHVSVSGIF 354 (621)
Q Consensus 295 ~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~p--------------------~~i~v~l~~~lv~~~~~G~~v~v~Gil 354 (621)
++|.++++.|.|+|||+|+|||+|+.+|+|++| |+++|+|++||||.|+|||+|.|+||+
T Consensus 293 ~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl 372 (915)
T PTZ00111 293 YTFELNHNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGIL 372 (915)
T ss_pred CCeEEccCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEE
Confidence 689999999999999999999999999999999 999999999999999999999999999
Q ss_pred ecccc----------CCc---------ee---------------------eec---------------------------
Q psy11213 355 LPLLR----------TGF---------RQ---------------------VTQ--------------------------- 367 (621)
Q Consensus 355 ~~~~~----------~~~---------~~---------------------~~~--------------------------- 367 (621)
.+... ..| .. +..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I 452 (915)
T PTZ00111 373 KVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSI 452 (915)
T ss_pred EeccccccccccccccccceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeE
Confidence 74320 000 00 000
Q ss_pred --------------------------------------CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccc
Q psy11213 368 --------------------------------------GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGL 409 (621)
Q Consensus 368 --------------------------------------g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gL 409 (621)
|++||||+|+||||||++|+++++++||.+|++|.+++.+|+
T Consensus 453 ~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgL 532 (915)
T PTZ00111 453 KARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGL 532 (915)
T ss_pred ECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccc
Confidence 135999999999999999999999999999999999999999
Q ss_pred eEEEe-ecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC
Q psy11213 410 TAAVM-KDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG 488 (621)
Q Consensus 410 ta~~~-~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g 488 (621)
++.+. .+..+|+|.+++|++++|++|+||||||++|++.+|.+||++||||+++|+|+|+.++++++|+||||+||.+|
T Consensus 533 Ta~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~g 612 (915)
T PTZ00111 533 TASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINS 612 (915)
T ss_pred cchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCccc
Confidence 99876 55568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC----C--------------------CCC
Q psy11213 489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR----Q--------------------PPT 544 (621)
Q Consensus 489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~----~--------------------~~~ 544 (621)
+||+++++.+|++||++|||||||+|++.|.|+++.|+.||+||++.|.... . ...
T Consensus 613 ryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (915)
T PTZ00111 613 RYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEK 692 (915)
T ss_pred ccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998763210 0 000
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhh-----------------------cCCCCCccCHHH
Q psy11213 545 ELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVAR-----------------------NSRDMSYTSARN 600 (621)
Q Consensus 545 ~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~-----------------------~~~~~~~~t~R~ 600 (621)
....++.++||+||.|||++ +|.|+++|.+.|.++|++||+... .+....++|+||
T Consensus 693 ~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~Rq 772 (915)
T PTZ00111 693 DYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRM 772 (915)
T ss_pred ccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHH
Confidence 12347999999999999987 999999999999999999998421 112346799999
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q psy11213 601 LLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 601 leslirla~A~Akl~lr~~V~ 621 (621)
||+|||||||||||+|++.||
T Consensus 773 LEsLIRLsEA~AK~rLs~~Vt 793 (915)
T PTZ00111 773 ISSIIRISVSLARMRLSTVVT 793 (915)
T ss_pred HHHHHHHHHHHhhhcCcCccc
Confidence 999999999999999999996
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=7.1e-80 Score=684.12 Aligned_cols=396 Identities=49% Similarity=0.814 Sum_probs=358.4
Q ss_pred CcccccccccCCCcEEEEEEEEEEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeecc
Q psy11213 223 PTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTR 302 (621)
Q Consensus 223 ~~~ir~l~s~~igkLV~i~GiV~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~ 302 (621)
+.++|+|++.++||||+|+|+|+|+|.|+|++.+++|+|.+||+.+++.+.++.+.+|..||+..|++ .++|.++.+
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~---~~~f~l~~~ 78 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQS---PTPFSLNHE 78 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCC---CCceEeccC
Confidence 46799999999999999999999999999999999999999999988887778889999999877884 346889999
Q ss_pred CcccchhhhhhhhcccCCCCCCCcccceeeecccccccccccCceEEEeeeeeccc-------cCCc---ee--------
Q psy11213 303 GSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLL-------RTGF---RQ-------- 364 (621)
Q Consensus 303 ~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~-------~~~~---~~-------- 364 (621)
.|+|+|||+|+|||.|+++|.|++||+++|+|++||||+|+|||+|.|+||+.+.. .+++ ..
T Consensus 79 ~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~ 158 (509)
T smart00350 79 RSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVR 158 (509)
T ss_pred CCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEE
Confidence 99999999999999999999999999999999999999999999999999997531 0010 00
Q ss_pred -----------------eec--------------------------------------------------------Cccc
Q psy11213 365 -----------------VTQ--------------------------------------------------------GNIN 371 (621)
Q Consensus 365 -----------------~~~--------------------------------------------------------g~i~ 371 (621)
+.. |++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~ 238 (509)
T smart00350 159 KLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDIN 238 (509)
T ss_pred EccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccce
Confidence 000 3569
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRT 451 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~ 451 (621)
|||+|+||||||++|+++++++||..|++|.+++.+||+++..+++.+|+|.+++|++++|++|+||||||++|+++.+.
T Consensus 239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHH
Q psy11213 452 AIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQH 531 (621)
Q Consensus 452 ~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~ 531 (621)
+||++||+|++++.|+|+.+++|++|+||||+||.+|+||+.+++.+|++||+++||||||+|++.|.|+.++|.+|++|
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCC--CCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCccCHHHHHHHHH
Q psy11213 532 ITYVHKHSRQ--PPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSR--DMSYTSARNLLAILR 606 (621)
Q Consensus 532 il~~~~~~~~--~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~--~~~~~t~R~leslir 606 (621)
+++.|..... .......++.+.|++||.|||++ .|.+|+++.++|.++|.++|+...... ...++|+|++++|+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliR 478 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIR 478 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHH
Confidence 9988754321 11223579999999999999995 999999999999999999998654321 246799999999999
Q ss_pred HHHHHHHhcCCCCCC
Q psy11213 607 LSTALARLRLCDEFQ 621 (621)
Q Consensus 607 la~A~Akl~lr~~V~ 621 (621)
+|+|+|||++|+.|+
T Consensus 479 la~A~A~l~~r~~V~ 493 (509)
T smart00350 479 LSEAHAKMRLSDVVE 493 (509)
T ss_pred HHHHHHHHcCCCccC
Confidence 999999999999986
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=9.5e-61 Score=503.81 Aligned_cols=277 Identities=51% Similarity=0.825 Sum_probs=218.0
Q ss_pred CceEEEeeeeeccccCCcee-----eecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQ-----VTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPIT 419 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~-----~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~ 419 (621)
|.+..-.||+..+..+.-.. ...|++||||+||||||||+|++++++++||++|++|.+++++|||+++.+++.+
T Consensus 28 g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~ 107 (331)
T PF00493_consen 28 GHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVT 107 (331)
T ss_dssp T-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGT
T ss_pred CcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecccccc
Confidence 55555567776665432211 1238999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc
Q psy11213 420 NEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN 499 (621)
Q Consensus 420 g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~ 499 (621)
|+|++++|++++||+|||||||||+|.++++.+||||||||+++|+|+|+.+++|+||+|+||+||.+|+||+++++.+|
T Consensus 108 ~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 108 GEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp SSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred ceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC---CCCCC--CCCCCHHHHHHHHHHHHcC-CCCCCHHHH
Q psy11213 500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR---QPPTE--LKPIDMSLVRRYIDLCKGK-NPTVPSSLT 573 (621)
Q Consensus 500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~---~~~~~--~~~i~~~~lr~~i~~ar~~-~p~ls~~a~ 573 (621)
++++++|+|||||+|++.|.++++.|..+++|+++.|.... ..... ...++.++||+||.|||+. .|.+++++.
T Consensus 188 i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~ 267 (331)
T PF00493_consen 188 INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAK 267 (331)
T ss_dssp T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCH
T ss_pred cccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHH
Confidence 99999999999999999999999999999999999887653 11111 2589999999999999955 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
++|.++|+++|+.........++|+|+||+|||||+|||||+||+.|+
T Consensus 268 ~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~ 315 (331)
T PF00493_consen 268 ELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVT 315 (331)
T ss_dssp HHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECS
T ss_pred HHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCcee
Confidence 999999999999874234567799999999999999999999999986
No 11
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.93 E-value=1.4e-24 Score=227.57 Aligned_cols=247 Identities=19% Similarity=0.218 Sum_probs=179.9
Q ss_pred cCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecC----------------------
Q psy11213 344 PGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTG---------------------- 401 (621)
Q Consensus 344 ~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g---------------------- 401 (621)
.|++..+..++.+.+.. |..|+||.|+||||||+++|.+++++|......|
T Consensus 11 ~Gq~~~~~~l~~~~~~~-------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 11 VGQEEMKQAMVLTAIDP-------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCHHHHHHHHHHHHhcc-------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 36655555554433311 1239999999999999999999999975221111
Q ss_pred -----------CCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCC
Q psy11213 402 -----------RGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG 468 (621)
Q Consensus 402 -----------~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~g 468 (621)
.+.+...|+|+...+.. +|++.+++|.+..|++|+++|||++.++++.++.|+++|+++.+++.+.|
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G 163 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREG 163 (334)
T ss_pred cccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECC
Confidence 11222335655555443 68999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCC---CCCC
Q psy11213 469 IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQ---PPTE 545 (621)
Q Consensus 469 i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~---~~~~ 545 (621)
....+++++.++||+||.+| .++++|++||.+.+.+....+.+++.++.++.......... ....
T Consensus 164 ~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~ 231 (334)
T PRK13407 164 LSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGA 231 (334)
T ss_pred eEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccc
Confidence 99999999999999999754 48999999998766665555547777777764321100000 0001
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 546 LKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 546 ~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
......+.+....+.++ .+.+++++.+++.+.....|.. ++|....++|.|+|+|.+++|+.|+
T Consensus 232 ~~~~~~~~i~~a~~~~~--~V~v~~~~~~yi~~l~~~~~~~----------s~Ra~i~l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 232 EDMQLRGRILGARARLP--QLKTPNTVLHDCAALCIALGSD----------GLRGELTLLRAARALAAFEGAEAVG 295 (334)
T ss_pred cccCCHHHHHHHHHhcC--CcccCHHHHHHHHHHHHHHCCC----------CchHHHHHHHHHHHHHHHcCCCeeC
Confidence 22333344443333222 6889999999999987666532 6899999999999999999999986
No 12
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.92 E-value=9.9e-25 Score=229.17 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=182.5
Q ss_pred ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccE------Eec----------------
Q psy11213 343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQ------YTT---------------- 400 (621)
Q Consensus 343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~------~~~---------------- 400 (621)
.+||+-.+..++.+++..+ .-|+||.|+||+|||+|++.++.++|... +.+
T Consensus 6 ivgq~~~~~al~~~~~~~~-------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDPK-------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRV 78 (337)
T ss_pred cccHHHHHHHHHHHhcCCC-------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhh
Confidence 3466655555555555421 12999999999999999999999886421 000
Q ss_pred ------------------CCCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213 401 ------------------GRGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQ 460 (621)
Q Consensus 401 ------------------g~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q 460 (621)
-.+.+...|+++...+.. +|++++++|.+..|++|++||||++.+++..++.|+++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 79 DSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred hcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 001122245665544443 799999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC
Q psy11213 461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR 540 (621)
Q Consensus 461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~ 540 (621)
.+.+.+.|....+++++.++||+||.+| .|+++|++||.+.+.+....+.+++.+|.+.......
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~--- 223 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDA--- 223 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhccc---
Confidence 8888889999999999999999999865 4899999999866555544444666777765432110
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213 541 QPPTEL--KPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRL 616 (621)
Q Consensus 541 ~~~~~~--~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~l 616 (621)
.+.... -......+.+-|..+++. .+.+++++.+++.+....+|. -|+|....++|.|+|+|.+++
T Consensus 224 ~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~----------~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 224 DPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV----------DGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC----------CCCcHHHHHHHHHHHHHHHcC
Confidence 000000 011133456677777765 788999999999998876551 168999999999999999999
Q ss_pred CCCCC
Q psy11213 617 CDEFQ 621 (621)
Q Consensus 617 r~~V~ 621 (621)
|+.|+
T Consensus 294 R~~V~ 298 (337)
T TIGR02030 294 RTEVT 298 (337)
T ss_pred CCCCC
Confidence 99986
No 13
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.92 E-value=2.4e-24 Score=242.77 Aligned_cols=224 Identities=18% Similarity=0.234 Sum_probs=183.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-Ee-cCCCCccccceEEEeec--CcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-YT-TGRGSSGVGLTAAVMKD--PITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~-~g~~~s~~gLta~~~~~--~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
||||.|+||||||++++++++.+|+.. |. ...+.+...|.+..... ..+|.|.+++|.|..|++|++||||+++++
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~ 97 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD 97 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence 999999999999999999999988742 22 22223334455543211 236788999999999999999999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL 526 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~ 526 (621)
+..++.|+++|+++.+++.+.|....++++|.||||+||..+ ...|+++|++||++.+.+.+.++.++..
T Consensus 98 ~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~----------~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 98 DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG----------GGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----------cCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 999999999999999999999999999999999999999841 1269999999999988888888888888
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHH
Q psy11213 527 KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAI 604 (621)
Q Consensus 527 ~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesl 604 (621)
+|+++.+.... .........+++.|..||+. .+.+++++.++|.+.+..++- -++|....+
T Consensus 168 eil~~~~~~~~-------~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv----------~s~Ra~i~~ 230 (589)
T TIGR02031 168 EIVRRERCNEV-------FRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI----------SGHRADLFA 230 (589)
T ss_pred HHHHHHHHhhh-------hhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC----------CCccHHHHH
Confidence 88888753211 11223567889999999976 678999999999998865421 258999999
Q ss_pred HHHHHHHHHhcCCCCCC
Q psy11213 605 LRLSTALARLRLCDEFQ 621 (621)
Q Consensus 605 irla~A~Akl~lr~~V~ 621 (621)
+|+|+|+|.|++|+.|+
T Consensus 231 ~r~ArA~Aal~gr~~V~ 247 (589)
T TIGR02031 231 VRAAKAHAALHGRTEVT 247 (589)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999999999986
No 14
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.91 E-value=3.9e-24 Score=243.67 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=177.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-----------------------------------cCCCCccccceEEEee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----------------------------------TGRGSSGVGLTAAVMK 415 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----------------------------------~g~~~s~~gLta~~~~ 415 (621)
+|||.|+||||||++++++++++|..... ...+.+...|.++...
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~ 106 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI 106 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH
Confidence 89999999999999999999999732111 1112222234443322
Q ss_pred cC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC
Q psy11213 416 DP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK 493 (621)
Q Consensus 416 ~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~ 493 (621)
.. .+|.+.+++|.|..|++||+||||+++++++.++.|+++|+++.+.+.+.|....+++++.+|||+||.+|
T Consensus 107 ~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg----- 181 (633)
T TIGR02442 107 ERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG----- 181 (633)
T ss_pred HHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-----
Confidence 11 25778899999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCC--CHHHHHHHHHHHHcC--CCCCC
Q psy11213 494 RSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPI--DMSLVRRYIDLCKGK--NPTVP 569 (621)
Q Consensus 494 ~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i--~~~~lr~~i~~ar~~--~p~ls 569 (621)
.|+++|++||++.+.+.+..+.+.+.+++++.+..... +......+ ....+++.|..|+.. .+.++
T Consensus 182 -------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is 251 (633)
T TIGR02442 182 -------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD---PEAFAARWAAEQEELRNRIARARSLLPSVRIS 251 (633)
T ss_pred -------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC---cHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence 48999999999888877777777788888776542211 10000111 234778889999877 57889
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 570 SSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 570 ~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+++.++|.+.+..++- -++|....++|+|+|+|.|++|+.|+
T Consensus 252 ~~~~~~l~~~~~~~~i----------~s~Ra~i~~~r~Ara~AaL~gr~~V~ 293 (633)
T TIGR02442 252 DSLIRFISELCIEFGV----------DGHRADIVMARAARALAALDGRRRVT 293 (633)
T ss_pred HHHHHHHHHHHHHhCC----------CCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999877631 15899999999999999999999986
No 15
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.91 E-value=8.9e-24 Score=232.61 Aligned_cols=235 Identities=23% Similarity=0.296 Sum_probs=164.5
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEE-------Eeec---------Ccccceeeecc
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAA-------VMKD---------PITNEMVLEGG 427 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~-------~~~~---------~~~g~~~l~~G 427 (621)
|+.|++|+|+||+|||++++.++.++|... +......+.+|+... ..+. ...|.+...+|
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 456999999999999999999999877532 111122222222110 0000 01345668899
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCC-C----Ccc----
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPK-R----SIE---- 497 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~-~----~~~---- 497 (621)
.+.+|++|+|||||++++++..+..|+++||++.+.|.++|....+++++.+|||+||+ +|+|+.. . +..
T Consensus 290 ~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~ 369 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR 369 (499)
T ss_pred hhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 7888642 1 111
Q ss_pred cccCCCHhHhccccEEEEecCCCChH--------HHHHHHHHHHhhhccC--C-CCC---CCCCCCCHHHHHHHHHHHHc
Q psy11213 498 QNIQLPAALLSRFDLLWLIQDKPDRD--------NDLKLAQHITYVHKHS--R-QPP---TELKPIDMSLVRRYIDLCKG 563 (621)
Q Consensus 498 ~~~~L~~aLlsRFDli~~~~d~~d~~--------~d~~ia~~il~~~~~~--~-~~~---~~~~~i~~~~lr~~i~~ar~ 563 (621)
....++.||+|||||++.+.+....+ ....+.+++...+... + ... .....++...|++|+
T Consensus 370 y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~----- 444 (499)
T TIGR00368 370 YWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFC----- 444 (499)
T ss_pred HhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhc-----
Confidence 12379999999999999887654321 2233444443221100 0 000 113445566665542
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 564 KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 564 ~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
.+++++.+.+.+.|..+ .+|.|....++|+|+++|.|++++.|+
T Consensus 445 ---~l~~~~~~~l~~a~~~~-----------~lS~R~~~rilrvArTiAdL~g~~~i~ 488 (499)
T TIGR00368 445 ---KLSAIDANDLEGALNKL-----------GLSSRATHRILKVARTIADLKEEKNIS 488 (499)
T ss_pred ---CCCHHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHHhhcCCCCCC
Confidence 35667777766655332 268999999999999999999999885
No 16
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.90 E-value=1e-23 Score=231.12 Aligned_cols=234 Identities=23% Similarity=0.327 Sum_probs=159.9
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEE----e-------cCCCCccccceEEEeecC---------cccceeeecc
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQY----T-------TGRGSSGVGLTAAVMKDP---------ITNEMVLEGG 427 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~-------~g~~~s~~gLta~~~~~~---------~~g~~~l~~G 427 (621)
|+.|++|+|+||+|||+|++.++.++|.... . .|......+++....+.+ ..|.+..++|
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 4469999999999999999999998775321 0 111111111111111111 1356778999
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCC---Cccc----c
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKR---SIEQ----N 499 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~---~~~~----~ 499 (621)
.+.+||+|++||||++.+++..+..|+++||++.++|.+.|...++|++|.+|||+||. +|.|+... +... .
T Consensus 289 ~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~ 368 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYL 368 (506)
T ss_pred HhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 78886422 1111 1
Q ss_pred cCCCHhHhccccEEEEecCCCCh---------HHHHHHHHHHHhhhcc--CCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213 500 IQLPAALLSRFDLLWLIQDKPDR---------DNDLKLAQHITYVHKH--SRQPPTELKPIDMSLVRRYIDLCKGKNPTV 568 (621)
Q Consensus 500 ~~L~~aLlsRFDli~~~~d~~d~---------~~d~~ia~~il~~~~~--~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l 568 (621)
-.|+.++||||||.+.+...+.. +....+.+.+...... .+. ......++.+.+++|+ .+
T Consensus 369 ~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~-~~~n~~l~~~~l~~~~--------~l 439 (506)
T PRK09862 369 NRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFC--------KL 439 (506)
T ss_pred hhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHH-HHHhcccCHHHHHHHh--------CC
Confidence 36999999999987777544211 1122233333221100 000 0012233344444432 35
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 569 s~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
++++.+.+...|..+ .+|.|....++|+|+++|.|++++.|+
T Consensus 440 ~~~~~~~l~~~~~~~-----------~lS~Ra~~rlLrvARTiADL~g~~~V~ 481 (506)
T PRK09862 440 ESEDARWLEETLIHL-----------GLSIRAWQRLLKVARTIADIDQSDIIT 481 (506)
T ss_pred CHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 666666666655322 268999999999999999999999985
No 17
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.90 E-value=2.8e-23 Score=218.04 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=176.4
Q ss_pred ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC--------------------
Q psy11213 343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-------------------- 402 (621)
Q Consensus 343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-------------------- 402 (621)
.+||+.....++......+ -.++||.|++|||||+++|.+++++|......+.
T Consensus 19 ivGq~~~k~al~~~~~~p~-------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPK-------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAI 91 (350)
T ss_pred HhChHHHHHHHHHhccCCC-------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhh
Confidence 3466544444444443322 1289999999999999999999998753311110
Q ss_pred --------------------CCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213 403 --------------------GSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQ 460 (621)
Q Consensus 403 --------------------~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q 460 (621)
+.+...|.|+..... ..|.+.+++|.+..|++|+++|||++++++..|+.|+++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 111111222211111 2567788999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCC
Q psy11213 461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSR 540 (621)
Q Consensus 461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~ 540 (621)
.+++.+.|....+++++.++||.||.+| .|+++|++||.+.+.+....+.+.+.+|.++.........
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg------------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~ 239 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQ 239 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccC------------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChh
Confidence 9999999999999999999999999865 4899999999866666555556888888877532110000
Q ss_pred C---CCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhc
Q psy11213 541 Q---PPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLR 615 (621)
Q Consensus 541 ~---~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~ 615 (621)
. .......... .-|..||+. .+.+++++.++|.+....+|. -|+|....++|.|+|+|.|+
T Consensus 240 ~~~~~~~~~~~~~~----~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~----------~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 240 EFREKYEESQEELR----SKIVAAQNLLPKVEIDYDLRVKISQICSELDV----------DGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred hhhhhhccccccCH----HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC----------CCChHHHHHHHHHHHHHHHc
Confidence 0 0001122233 344444443 689999999999998777653 27999999999999999999
Q ss_pred CCCCCC
Q psy11213 616 LCDEFQ 621 (621)
Q Consensus 616 lr~~V~ 621 (621)
+|+.|+
T Consensus 306 GR~~V~ 311 (350)
T CHL00081 306 GRTEVT 311 (350)
T ss_pred CCCCCC
Confidence 999986
No 18
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.88 E-value=3.4e-22 Score=215.33 Aligned_cols=249 Identities=19% Similarity=0.176 Sum_probs=184.4
Q ss_pred ccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEE-e
Q psy11213 339 TRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAV-M 414 (621)
Q Consensus 339 v~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~-~ 414 (621)
+.+...|++..|..++.++..++ ||||.|+||||||++++++++.+.+. .+....-++...+++.. .
T Consensus 18 l~~~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i 88 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI 88 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH
Confidence 45566788888888888888888 99999999999999999999987642 11111111223466643 2
Q ss_pred ec-Cccccee-eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC
Q psy11213 415 KD-PITNEMV-LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP 492 (621)
Q Consensus 415 ~~-~~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~ 492 (621)
+. ...|.+. ..+|.+..|+ ++|+|||++++++.+++|+++|+++.+++ +|....+|.++.++|+ ||...
T Consensus 89 ~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE---- 159 (498)
T PRK13531 89 QALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTAS-NELPE---- 159 (498)
T ss_pred hhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc----
Confidence 22 2256664 6788877665 99999999999999999999999999998 7889999999888888 87521
Q ss_pred CCCcccccCCCHhHhccccEEEEecCCCCh-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHH
Q psy11213 493 KRSIEQNIQLPAALLSRFDLLWLIQDKPDR-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSS 571 (621)
Q Consensus 493 ~~~~~~~~~L~~aLlsRFDli~~~~d~~d~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~ 571 (621)
.-...+++++|| ++.+..++++. ++..++...... ....+....+.++.+++......+++ +.+++.
T Consensus 160 ------~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~~~---~~~~~~~~~~vis~eel~~lq~~v~~--V~v~d~ 227 (498)
T PRK13531 160 ------ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQD---ENDNPVPASLQITDEEYQQWQKEIGK--ITLPDH 227 (498)
T ss_pred ------cCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcccc---cccCCCcccCCCCHHHHHHHHHHhcc--eeCCHH
Confidence 113557999999 88888999974 444666653210 01111122456899999888877765 788999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 572 LTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 572 a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+.++|.+....+|+. .+...+|+|...+++++++|+|.+++|+.|+
T Consensus 228 v~eyI~~L~~~lr~~----r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~ 273 (498)
T PRK13531 228 VFELIFQLRQQLDAL----PNAPYVSDRRWKKAIRLLQASAFFSGRDAIA 273 (498)
T ss_pred HHHHHHHHHHHHhcC----CCCCCcCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 998888776555543 1233589999999999999999999999985
No 19
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.87 E-value=6.2e-22 Score=209.52 Aligned_cols=250 Identities=27% Similarity=0.331 Sum_probs=186.1
Q ss_pred ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCc
Q psy11213 343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPI 418 (621)
Q Consensus 343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~ 418 (621)
..|++..+..++.++..++ |+||.|+||||||+|++.+|+.+... .++++..++. +++.......
T Consensus 26 ~~g~~~~~~~~l~a~~~~~---------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d--~~G~~~~~~~ 94 (329)
T COG0714 26 VVGDEEVIELALLALLAGG---------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSD--LLGTYAYAAL 94 (329)
T ss_pred eeccHHHHHHHHHHHHcCC---------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHH--hcCchhHhhh
Confidence 4456656666666777777 99999999999999999999996643 3444555444 6776666655
Q ss_pred ---ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeE-EecCCcceEEeecCCCCCCCCCCC
Q psy11213 419 ---TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIM-TRLNARVSILAAANPAYGRYNPKR 494 (621)
Q Consensus 419 ---~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~-~~l~ar~~viAa~Np~~g~~~~~~ 494 (621)
.+.+.+.+|.+..+.++++++|||++.+++.+++|+++|+++.+++ .|.. ..++..+.++||+||.+
T Consensus 95 ~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e------- 165 (329)
T COG0714 95 LLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGE------- 165 (329)
T ss_pred hccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccc-------
Confidence 7889999999998888899999999999999999999999999999 4666 88999999999999873
Q ss_pred CcccccCCCHhHhccccEEEEecCCCChHHHHHH-HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHH
Q psy11213 495 SIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL-AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLT 573 (621)
Q Consensus 495 ~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i-a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~ 573 (621)
..+..+|++|+++|| ++.+..++|+.+.+..+ ..+...... ........+.++...+.++....+ +..+++++.
T Consensus 166 -~~g~~~l~eA~ldRf-~~~~~v~yp~~~~e~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~ 240 (329)
T COG0714 166 -YEGTYPLPEALLDRF-LLRIYVDYPDSEEEERIILARVGGVDE-LDLESLVKPVLSDEELLRLQKEVK--KVPVSDEVI 240 (329)
T ss_pred -cCCCcCCCHHHHhhE-EEEEecCCCCchHHHHHHHHhCccccc-cccchhhhhhhCHHHHHHHHhhhc--cCCchHHHH
Confidence 455668999999999 78899999955554444 333321000 001111233444444444333332 578888999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V 620 (621)
+++.......|.... .....++|....++..++++|.+.++..|
T Consensus 241 ~~~~~l~~~~~~~~~---~~~~~s~r~~~~~~~~~~~~a~~~~~~~~ 284 (329)
T COG0714 241 DYIVTLVAALREAPD---VALGASPRASLALLAALRALALLDGRDAV 284 (329)
T ss_pred HHHHHHHHhhccccc---hhccCCchhHHHHHHHHHhhhhhcCcccc
Confidence 998888776665432 23457899999999999999999998876
No 20
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.87 E-value=3.5e-22 Score=209.00 Aligned_cols=253 Identities=21% Similarity=0.230 Sum_probs=182.0
Q ss_pred ccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC--------------
Q psy11213 337 ENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-------------- 402 (621)
Q Consensus 337 ~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-------------- 402 (621)
.+--+..+|++..-..++....... -..+|+.|+.|||||+++|+++.++|....+.|.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P~-------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~ 85 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDPQ-------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCD 85 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcccc-------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhH
Confidence 3445666777643333322222221 1289999999999999999999999976533332
Q ss_pred --------------------------CCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCChhhhhhhH
Q psy11213 403 --------------------------GSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIH 454 (621)
Q Consensus 403 --------------------------~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~ 454 (621)
+++.--+.+++.... ..|.-.++||.|..||+||++|||++.+++..++.||
T Consensus 86 ~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LL 165 (423)
T COG1239 86 ECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALL 165 (423)
T ss_pred HHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHH
Confidence 111111222221111 2477789999999999999999999999999999999
Q ss_pred hhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 455 EVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 455 eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
++|+.+.-.+.+.|+..++|++|.+|||+||.+| +|.++|+|||++.+-+-...+.+...+|.++.+.
T Consensus 166 d~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 166 DVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 9999987777779999999999999999999987 5999999999988888777788888888887765
Q ss_pred hhccCCCCCCCCCC--CCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHH
Q psy11213 535 VHKHSRQPPTELKP--IDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTA 610 (621)
Q Consensus 535 ~~~~~~~~~~~~~~--i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A 610 (621)
.. ..|..-... -....||.-+..||+. .+.+++.+..++.+.-..+ .- -+.|.-..+.|.|+|
T Consensus 234 f~---~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~----~v------~g~radi~~~r~a~a 300 (423)
T COG1239 234 FE---AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL----AV------DGHRADIVVVRAAKA 300 (423)
T ss_pred hh---cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh----cc------CCCchhhHHHHHHHH
Confidence 41 111100011 1244556556666665 7788888888777653221 11 137888899999999
Q ss_pred HHHhcCCCCCC
Q psy11213 611 LARLRLCDEFQ 621 (621)
Q Consensus 611 ~Akl~lr~~V~ 621 (621)
+|.+.++.+|+
T Consensus 301 ~aa~~Gr~~v~ 311 (423)
T COG1239 301 LAALRGRTEVE 311 (423)
T ss_pred HHHhcCceeee
Confidence 99999999885
No 21
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.86 E-value=5.1e-22 Score=177.13 Aligned_cols=125 Identities=30% Similarity=0.420 Sum_probs=93.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
||||.|.||+|||++++++|+.+. |..+++...++. +++..+.+..+++|.+.+|++. .+|+++||||+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsD--i~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSD--ILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHH--HHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccc--ceeeeeeccCCCeeEeecChhh---hceeeecccccCC
Confidence 899999999999999999999854 455666766666 8888888888899999999998 6899999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
+..|++|+|+|+++.+++ .|....+|..+.||||.||.+ ..+.+.||++++|||
T Consensus 76 pktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e--------~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVE--------QEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT----------S------HHHHTTS
T ss_pred HHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccc--------cCceecCCHHHhccc
Confidence 999999999999999999 799999999999999999984 456679999999999
No 22
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.86 E-value=4.8e-22 Score=192.54 Aligned_cols=150 Identities=25% Similarity=0.386 Sum_probs=84.2
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEecCC----CCcccc------ceEE-EeecC---------cccceeeecc
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR----GSSGVG------LTAA-VMKDP---------ITNEMVLEGG 427 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~----~~s~~g------Lta~-~~~~~---------~~g~~~l~~G 427 (621)
|++|+||+|+||||||++++.+..++|........ ..+..| +... ..+.+ ..|....+||
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG 100 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG 100 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC
Confidence 45699999999999999999999999875432211 111111 1110 11111 1234478999
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCC-CCCCc------cc-
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYN-PKRSI------EQ- 498 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~-~~~~~------~~- 498 (621)
.+.+||+||+|+||++.+++....+|.++||++.+.|+++|...++|++|.+|||+||+ +|.|. +.... ..
T Consensus 101 eislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~ 180 (206)
T PF01078_consen 101 EISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRR 180 (206)
T ss_dssp CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------------
T ss_pred HHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999997 56554 22221 11
Q ss_pred -ccCCCHhHhccccEEEEec
Q psy11213 499 -NIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 499 -~~~L~~aLlsRFDli~~~~ 517 (621)
.-.|+.||+||||+.+.+.
T Consensus 181 Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 181 YQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 2369999999999766553
No 23
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-21 Score=205.36 Aligned_cols=226 Identities=22% Similarity=0.307 Sum_probs=152.4
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEe-----------cCC------------------CCccccceEEEeecCc
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT-----------TGR------------------GSSGVGLTAAVMKDPI 418 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----------~g~------------------~~s~~gLta~~~~~~~ 418 (621)
|++|+||+||||||||+|++.+..++|..... .|. ..|.+.| .
T Consensus 197 GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aL--------v 268 (490)
T COG0606 197 GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAAL--------V 268 (490)
T ss_pred cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHH--------h
Confidence 67899999999999999999999998874311 111 1111111 1
Q ss_pred ccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCC-C-
Q psy11213 419 TNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKR-S- 495 (621)
Q Consensus 419 ~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~-~- 495 (621)
.|.-.-++|.+.+||+||+|+||+-....+..++|.+.||.+.+.|++++...++|++|.++||+||+ +|.|.... .
T Consensus 269 GGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C 348 (490)
T COG0606 269 GGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRC 348 (490)
T ss_pred CCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCc
Confidence 34456789999999999999999999999999999999999999999999999999999999999997 56554322 2
Q ss_pred -cc------cccCCCHhHhccccEEEEecCCCChH---------HHHHHHHHHHhhhcc--CCCCC-CCCCCCCHHHHHH
Q psy11213 496 -IE------QNIQLPAALLSRFDLLWLIQDKPDRD---------NDLKLAQHITYVHKH--SRQPP-TELKPIDMSLVRR 556 (621)
Q Consensus 496 -~~------~~~~L~~aLlsRFDli~~~~d~~d~~---------~d~~ia~~il~~~~~--~~~~~-~~~~~i~~~~lr~ 556 (621)
.. -.-+|+.+|+||+|+..-+.+.+-.+ .-..+.+.+...+.. .+... .....++.+.|++
T Consensus 349 ~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k 428 (490)
T COG0606 349 PCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRK 428 (490)
T ss_pred CCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHH
Confidence 11 12369999999999887775543111 112222222211100 00000 0122344444444
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 557 YIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 557 ~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V 620 (621)
++ .++.++.+++... ++ ...+|.|....++|+|...|.|.+++.|
T Consensus 429 ~~--------~L~~~~~~~L~~a---l~--------~~~lS~R~~~rILKvarTiADL~g~~~i 473 (490)
T COG0606 429 FC--------ALQREDADLLKAA---LE--------RLGLSARAYHRILKVARTIADLEGSEQI 473 (490)
T ss_pred hc--------ccCHhHHHHHHHH---HH--------hcchhHHHHHHHHHHHhhhhcccCcchh
Confidence 32 2333444444331 11 2347899999999999999999998776
No 24
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.83 E-value=2.2e-19 Score=185.89 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=152.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec--CCCCccccceEEEeec--Ccccceeeeccceeec--CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRGSSGVGLTAAVMKD--PITNEMVLEGGALVLA--DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~~s~~gLta~~~~~--~~~g~~~l~~GalvlA--d~gi~~IDEidk 444 (621)
||||.|+||||||++++.+|+.+....+.. ....+...+++..... ...+...+..|++..| +++++++||||.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 999999999999999999999876654322 2223333355543222 1223366789999776 677899999999
Q ss_pred CChhhhhhhHhhhc-ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213 445 LPDADRTAIHEVME-QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD 523 (621)
Q Consensus 445 ~~~~~~~~L~eame-~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~ 523 (621)
++++.+..|+.++| .+.+.+...+.....+..|.++||+||.+ .-|...-+.+...|+.+++||| ++.+..++|+.+
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g-~Gd~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~e 223 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG-LGDTTGLYHGTQQINQAQMDRW-SIVTTLNYLEHD 223 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC-cCCCCcceeeeecCCHHHHhhe-eeEeeCCCCCHH
Confidence 99999999999999 56888876666666666899999999974 2244444778889999999999 566779999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213 524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA 603 (621)
Q Consensus 524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les 603 (621)
.+.+|....... ++ ...++++.+++++.....|+....+.-...+|+|.+.+
T Consensus 224 ~E~~Il~~~~~~-------------~~---------------~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~ 275 (327)
T TIGR01650 224 NEAAIVLAKAKG-------------FD---------------DTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVIT 275 (327)
T ss_pred HHHHHHHhhccC-------------CC---------------ccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHH
Confidence 999987643110 00 00134566677777777776443333455689999999
Q ss_pred HHHHHHH
Q psy11213 604 ILRLSTA 610 (621)
Q Consensus 604 lirla~A 610 (621)
+++.+..
T Consensus 276 w~~~~~~ 282 (327)
T TIGR01650 276 WAENAEI 282 (327)
T ss_pred HHHHHHh
Confidence 9988764
No 25
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.83 E-value=6.2e-20 Score=205.34 Aligned_cols=206 Identities=20% Similarity=0.229 Sum_probs=161.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc--cEEecCCCCccccceEEEeecC--cccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR--SQYTTGRGSSGVGLTAAVMKDP--ITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr--~~~~~g~~~s~~gLta~~~~~~--~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
.|||.|++|||||++++.++.++|. .+.....+.|...|.++...+. ..|..++++|.|.+||+||+|+||++.++
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~ 106 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLE 106 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCC
Confidence 7999999999999999999999886 4455566777777777653322 25676799999999999999999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL 526 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~ 526 (621)
+..+++|+++||.+.++|+++|.+.++|++|.+||+.|+.. | ...|+++|+|||||.+.+ +.+......
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~--~--------~~~L~~~lLDRf~l~v~v-~~~~~~~~~ 175 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE--E--------DERAPAALADRLAFHLDL-DGLALRDAR 175 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh--c--------ccCCCHHhHhheEEEEEc-CCCChHHhc
Confidence 99999999999999999999999999999999999977752 1 147999999999865555 444433221
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc-CHHHHHH
Q psy11213 527 KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYT-SARNLLA 603 (621)
Q Consensus 527 ~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~-t~R~les 603 (621)
. ...+.+. |..||+. +..++++..+++.+.+..+ .+ |.|....
T Consensus 176 ~-------------------~~~~~~~----I~~AR~rl~~v~v~~~~l~~i~~~~~~~-----------gv~S~Ra~i~ 221 (584)
T PRK13406 176 E-------------------IPIDADD----IAAARARLPAVGPPPEAIAALCAAAAAL-----------GIASLRAPLL 221 (584)
T ss_pred c-------------------cCCCHHH----HHHHHHHHccCCCCHHHHHHHHHHHHHh-----------CCCCcCHHHH
Confidence 0 1122232 3333332 7889999888877655431 23 8999999
Q ss_pred HHHHHHHHHHhcCCCCCC
Q psy11213 604 ILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 604 lirla~A~Akl~lr~~V~ 621 (621)
++|+|+|+|.|++++.|+
T Consensus 222 llraARa~AaL~Gr~~V~ 239 (584)
T PRK13406 222 ALRAARAAAALAGRTAVE 239 (584)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 999999999999999985
No 26
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.80 E-value=1.7e-18 Score=177.36 Aligned_cols=201 Identities=19% Similarity=0.224 Sum_probs=142.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe-cCC-CCccccceEEEe----------------ecCcccceeeeccceee
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT-TGR-GSSGVGLTAAVM----------------KDPITNEMVLEGGALVL 431 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~-~~s~~gLta~~~----------------~~~~~g~~~l~~Galvl 431 (621)
.|+||.|+||||||++++++++.+...... ++. ......+.+... +........+.+|++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 499999999999999999999876554432 121 111112222110 00001223456888876
Q ss_pred c--CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC---CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 432 A--DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA---GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 432 A--d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~---gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
| +|++++|||+|+++++.++.|+++|+++.+++... +.....+..+.||||+||.. ..+..+++++|
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~--------~~g~~~l~~aL 173 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE--------YAGVHETQDAL 173 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc--------ccceecccHHH
Confidence 4 78999999999999999999999999999888532 34456778899999999962 33344679999
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKV 586 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~ 586 (621)
++|| ..+..+.|+.+.+.+|.+.. ..++++..+.+++.+.++|..
T Consensus 174 ~~R~--~~i~i~~P~~~~e~~Il~~~---------------------------------~~~~~~~~~~iv~~~~~~R~~ 218 (262)
T TIGR02640 174 LDRL--ITIFMDYPDIDTETAILRAK---------------------------------TDVAEDSAATIVRLVREFRAS 218 (262)
T ss_pred Hhhc--EEEECCCCCHHHHHHHHHHh---------------------------------hCCCHHHHHHHHHHHHHHHhh
Confidence 9999 78888999999888887642 134667888999999999932
Q ss_pred hhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 587 ARNSRDMSYTSARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 587 ~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V 620 (621)
. .....++|++..+.|.++++ .++..|
T Consensus 219 ~----~~~~~~~r~~i~~~~~~~~~---~~~~~~ 245 (262)
T TIGR02640 219 G----DEITSGLRASLMIAEVATQQ---DIPVDV 245 (262)
T ss_pred C----CccCCcHHHHHHHHHHHHHc---CCCCCC
Confidence 1 12335688887766666655 556655
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.69 E-value=8.8e-17 Score=156.98 Aligned_cols=171 Identities=23% Similarity=0.294 Sum_probs=107.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~ 449 (621)
|+||+||||+|||+||+.+|+.+...... +|......+-.++. + --+..+-|+|||||++++...
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i----------l----~~l~~~~ILFIDEIHRlnk~~ 117 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI----------L----TNLKEGDILFIDEIHRLNKAQ 117 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH----------H----HT--TT-EEEECTCCC--HHH
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH----------H----HhcCCCcEEEEechhhccHHH
Confidence 99999999999999999999997765532 22111111100000 0 012357799999999999999
Q ss_pred hhhhHhhhcceEEEE-ecCC---eEEecC-CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 450 RTAIHEVMEQQTISI-AKAG---IMTRLN-ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 450 ~~~L~eame~q~isi-~k~g---i~~~l~-ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
+..|+.+||++.+.+ ..+| ....++ .+|++|+|++..+ .|++||.+||.+++-+ +
T Consensus 118 qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-------------~ls~pLrdRFgi~~~l-~------ 177 (233)
T PF05496_consen 118 QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-------------LLSSPLRDRFGIVLRL-E------ 177 (233)
T ss_dssp HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-------------CTSHCCCTTSSEEEE---------
T ss_pred HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-------------ccchhHHhhcceecch-h------
Confidence 999999999999865 2333 222332 3599999998763 5999999999754433 2
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213 525 DLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA 603 (621)
Q Consensus 525 d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les 603 (621)
.++.++|.+.+..+... +..+++++...|++. ..-|||-...
T Consensus 178 -----------------------~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r--------------srGtPRiAnr 220 (233)
T PF05496_consen 178 -----------------------FYSEEELAKIVKRSARILNIEIDEDAAEEIARR--------------SRGTPRIANR 220 (233)
T ss_dssp -------------------------THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC--------------TTTSHHHHHH
T ss_pred -----------------------cCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh--------------cCCChHHHHH
Confidence 34556666777655444 788899888877652 1237998888
Q ss_pred HHHHHHHHH
Q psy11213 604 ILRLSTALA 612 (621)
Q Consensus 604 lirla~A~A 612 (621)
|+|-....|
T Consensus 221 ll~rvrD~a 229 (233)
T PF05496_consen 221 LLRRVRDFA 229 (233)
T ss_dssp HHHHHCCCC
T ss_pred HHHHHHHHH
Confidence 887655443
No 28
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.67 E-value=1.3e-16 Score=147.49 Aligned_cols=129 Identities=24% Similarity=0.395 Sum_probs=96.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~~ 446 (621)
||||+|+||||||+|++++++.+....+. ....++...|.+..... .+...+.+|.++.| ++++++||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 69999999999999999999998766533 33444555577665544 56777888988877 78999999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCC------cceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNA------RVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~a------r~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
++....|+.+++++.+.+...+.....+. .+.+|||+||.. ....+++++|+|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---------KGRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---------CCcCcCCHHHHhhC
Confidence 99999999999999998766665555444 499999999984 22347999999998
No 29
>PHA02244 ATPase-like protein
Probab=99.66 E-value=1.7e-15 Score=158.67 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=105.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCCCh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKLPD 447 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~~~ 447 (621)
.||||.||||||||+|++++++.+.+..+..........+.+.+ + ..| .++.|++..| +||+|+|||++.+++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i--~-~~g--~~~dgpLl~A~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI--D-ANG--KFHETPFYEAFKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc--c-ccc--cccchHHHHHhhcCCEEEEeCcCcCCH
Confidence 49999999999999999999999776665543222222233211 1 133 3456666544 899999999999999
Q ss_pred hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
+.+..|+.+++++.+.+ .|.....+.+|++|||+||....|+. .+.+.-.|++++++|| +.+-.++|.
T Consensus 195 ~vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRF--v~I~~dyp~ 262 (383)
T PHA02244 195 EALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRF--APIEFDYDE 262 (383)
T ss_pred HHHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhc--EEeeCCCCc
Confidence 99999999999987766 46677778899999999997533432 2335567999999999 667788876
No 30
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.65 E-value=7.3e-17 Score=145.52 Aligned_cols=117 Identities=38% Similarity=0.652 Sum_probs=84.0
Q ss_pred hhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCcc
Q psy11213 87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYKS 166 (621)
Q Consensus 87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~~ 166 (621)
+.+.+||++|.. .++|+++|++|+..++++|.||++||.+|+++||++|+++|.+|+++|++|+.+++..+..
T Consensus 3 ~~F~~Fl~~f~~-------~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~ 75 (121)
T PF14551_consen 3 RRFREFLREFKE-------EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFP 75 (121)
T ss_dssp HHHHHHCCCH-T-------S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT--
T ss_pred HHHHHHHHcCCC-------chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677777753 4689999999999999999999999999999999999999999999999999999876421
Q ss_pred cccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccc--cceeEEEEeCCCCCCCcccccccccCCCcEEEEEE
Q psy11213 167 HDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDL--MRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRG 242 (621)
Q Consensus 167 ~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l--~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~G 242 (621)
.. . ....|+.. ...++|++.+. +...++|+|++.+|||||+|+|
T Consensus 76 ~~------------------~------------~~~~~~~~~~~~~~~v~~~~~--~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 76 SE------------------Q------------QSSFPPELKRRKEIQVRFYNL--PKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp --------------------------------------GCCTTTS--EEEEES---S-EE-GGG-SGGGTTSEEEEEE
T ss_pred hh------------------c------------ccCCchhhccceeEEEEEcCC--CCCcCcCCCChHHCCCEEEEeC
Confidence 00 0 00111111 13466777766 5789999999999999999999
No 31
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.64 E-value=3e-15 Score=169.50 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=118.8
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCC-----e---EEecCCcceEEeecCCCCCCCCCCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG-----I---MTRLNARVSILAAANPAYGRYNPKRS 495 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~g-----i---~~~l~ar~~viAa~Np~~g~~~~~~~ 495 (621)
+++|++..|+||++||||++.+++..|..|+++|+++++.+.... . ....|+++.+|+++||..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~-------- 279 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD-------- 279 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence 579999999999999999999999999999999999999885431 1 234678899999999852
Q ss_pred cccccCCCHhHhcccc---EEEEecCC--CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCC
Q psy11213 496 IEQNIQLPAALLSRFD---LLWLIQDK--PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVP 569 (621)
Q Consensus 496 ~~~~~~L~~aLlsRFD---li~~~~d~--~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls 569 (621)
..++.++|++||+ +.+.+.+. .+.+....+++++... + .+. ..|.++
T Consensus 280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~----------------------~--~r~G~l~~~s 332 (608)
T TIGR00764 280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE----------------------V--KKDGRIPHFT 332 (608)
T ss_pred ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----------------------H--HHhCCCCcCC
Confidence 1358999999999 65555443 2334444455444321 1 112 257899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 570 SSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 570 ~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+++.+.|.++|..+ . ...+..+++.|++.+++|.|.+.|+.+.++.|+
T Consensus 333 ~~Av~~Li~~~~R~--a--g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~ 380 (608)
T TIGR00764 333 RDAVEEIVREAQRR--A--GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVT 380 (608)
T ss_pred HHHHHHHHHHHHHH--H--hcccccCCCHHHHHHHHHHHHHHHHhcCCceec
Confidence 99999999886543 2 122346688999999999999999999887764
No 32
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=4.6e-14 Score=140.46 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=117.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~ 449 (621)
|+||+||||.|||+||..+|+.+.-.. .|+|-.-...|-.++.. --+..+.|+|||||+++++..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL--------------t~Le~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL--------------TNLEEGDVLFIDEIHRLSPAV 119 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH--------------hcCCcCCeEEEehhhhcChhH
Confidence 999999999999999999999865443 22222211111111000 012357899999999999999
Q ss_pred hhhhHhhhcceEEEE--ecC--C--eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213 450 RTAIHEVMEQQTISI--AKA--G--IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD 523 (621)
Q Consensus 450 ~~~L~eame~q~isi--~k~--g--i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~ 523 (621)
-..|+.|||+-.+.| .++ . +...|| .|++|+|+-..+ .|+.||.+||.++.-+.
T Consensus 120 EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-pFTLIGATTr~G-------------~lt~PLrdRFGi~~rle------ 179 (332)
T COG2255 120 EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-PFTLIGATTRAG-------------MLTNPLRDRFGIIQRLE------ 179 (332)
T ss_pred HHHhhhhhhheeEEEEEccCCccceEeccCC-CeeEeeeccccc-------------cccchhHHhcCCeeeee------
Confidence 999999999988765 221 1 222344 388888887653 59999999998665542
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213 524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL 602 (621)
Q Consensus 524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le 602 (621)
.++.++|.+.+..+... +..+++++...|.+. + .-|||-..
T Consensus 180 ------------------------fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r-------S-------RGTPRIAn 221 (332)
T COG2255 180 ------------------------FYTVEELEEIVKRSAKILGIEIDEEAALEIARR-------S-------RGTPRIAN 221 (332)
T ss_pred ------------------------cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh-------c-------cCCcHHHH
Confidence 34445555555444333 677777777666542 1 13677777
Q ss_pred HHHHHHHHHHHhcCCCCC
Q psy11213 603 AILRLSTALARLRLCDEF 620 (621)
Q Consensus 603 slirla~A~Akl~lr~~V 620 (621)
.|+|-..-.|-.+....+
T Consensus 222 RLLrRVRDfa~V~~~~~I 239 (332)
T COG2255 222 RLLRRVRDFAQVKGDGDI 239 (332)
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 777777777766665544
No 33
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=6.5e-14 Score=150.92 Aligned_cols=199 Identities=15% Similarity=0.200 Sum_probs=134.8
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceee-eccceeecCCCeeE
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVL-EGGALVLADQGICC 438 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l-~~GalvlAd~gi~~ 438 (621)
.+.+|||.|+.||||..+|+++++.+||.. ..|+..+.. ..|+++. ....||.-.- ++|.+-+|+||.+|
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLF 345 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTLF 345 (560)
T ss_pred CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeEE
Confidence 467999999999999999999999999853 234433222 1122211 1112332222 68999999999999
Q ss_pred ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213 439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD 518 (621)
Q Consensus 439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d 518 (621)
+|||..|+..-|..|+.+++++.+.- -|-+...+.++.||||+|..-. ...+.-.+.+.|+-|...+-+..+
T Consensus 346 LDEIgempl~LQaKLLRVLQEkei~r--vG~t~~~~vDVRIIAATN~nL~------~~i~~G~FReDLYYRLNV~~i~iP 417 (560)
T COG3829 346 LDEIGEMPLPLQAKLLRVLQEKEIER--VGGTKPIPVDVRIIAATNRNLE------KMIAEGTFREDLYYRLNVIPITIP 417 (560)
T ss_pred ehhhccCCHHHHHHHHHHHhhceEEe--cCCCCceeeEEEEEeccCcCHH------HHHhcCcchhhheeeeceeeecCC
Confidence 99999999999999999999987653 5888888999999999997511 122233567788888875555444
Q ss_pred CCC-hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213 519 KPD-RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS 597 (621)
Q Consensus 519 ~~d-~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t 597 (621)
+.- ..+|. +.+-..+|.+|-..-.+..+.+++++.+.|.+| .+|-+
T Consensus 418 PLReR~eDI--------------------~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y-------------~WPGN 464 (560)
T COG3829 418 PLRERKEDI--------------------PLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY-------------DWPGN 464 (560)
T ss_pred CcccCcchH--------------------HHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC-------------CCCch
Confidence 321 12222 222223344443332233456899998887664 57788
Q ss_pred HHHHHHHHHHH
Q psy11213 598 ARNLLAILRLS 608 (621)
Q Consensus 598 ~R~leslirla 608 (621)
+|+|+++|.-+
T Consensus 465 VRELeNviER~ 475 (560)
T COG3829 465 VRELENVIERA 475 (560)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 34
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=4.8e-13 Score=149.94 Aligned_cols=193 Identities=21% Similarity=0.264 Sum_probs=120.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc---------EEe-cCCC---Ccccc----ceEEEeecC---------ccccee
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS---------QYT-TGRG---SSGVG----LTAAVMKDP---------ITNEMV 423 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---------~~~-~g~~---~s~~g----Lta~~~~~~---------~~g~~~ 423 (621)
.|+||+||||||||++|+++++.+.+. .|. .... ....+ +.+++ .++ ..|...
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCc-ccchhccccccccCCccc
Confidence 499999999999999999998653211 111 0100 00001 11111 111 122234
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC---C------------eEEecCCcceEEeecCCCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA---G------------IMTRLNARVSILAAANPAYG 488 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~---g------------i~~~l~ar~~viAa~Np~~g 488 (621)
.++|.+..|++|+++|||++.|++..++.|+.+||++.+.+..+ + ....+++++.+|+|+|...
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p- 244 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP- 244 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc-
Confidence 56788999999999999999999999999999999988766411 0 0234688889988876432
Q ss_pred CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213 489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTV 568 (621)
Q Consensus 489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l 568 (621)
..+++++.|||.. +.+ ...+.++-.+++++.++ +....+
T Consensus 245 -----------~~L~paLrsR~~~-I~f-~pL~~eei~~Il~~~a~----------------------------k~~i~i 283 (531)
T TIGR02902 245 -----------EEIPPALRSRCVE-IFF-RPLLDEEIKEIAKNAAE----------------------------KIGINL 283 (531)
T ss_pred -----------ccCChHHhhhhhe-eeC-CCCCHHHHHHHHHHHHH----------------------------HcCCCc
Confidence 1589999999943 333 33344444555554432 124567
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 569 s~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V 620 (621)
++++.+.|..+.. +.|++.++++.|...|..+.+..|
T Consensus 284 s~~al~~I~~y~~---------------n~Rel~nll~~Aa~~A~~~~~~~I 320 (531)
T TIGR02902 284 EKHALELIVKYAS---------------NGREAVNIVQLAAGIALGEGRKRI 320 (531)
T ss_pred CHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHhhCCCcEE
Confidence 7777776654310 247777777777666655554433
No 35
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.45 E-value=6.2e-13 Score=150.33 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=112.5
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC-----C---eEEecCCcceEEeecCCCCCCCCCCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA-----G---IMTRLNARVSILAAANPAYGRYNPKRS 495 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~-----g---i~~~l~ar~~viAa~Np~~g~~~~~~~ 495 (621)
+++|++..|+||++||||++.|++..+..|+++|+++.+.+... + .....|+++.||+++|+.
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~--------- 287 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD--------- 287 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC---------
Confidence 49999999999999999999999999999999999999887321 0 034567889999999985
Q ss_pred cccccCCCHhHhcccc---EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc------CCC
Q psy11213 496 IEQNIQLPAALLSRFD---LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG------KNP 566 (621)
Q Consensus 496 ~~~~~~L~~aLlsRFD---li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~------~~p 566 (621)
.. ..+.++|.+||. ....+.+. ..-+.+..++|+.+..+ ..|
T Consensus 288 ll--~~~dpdL~~rfk~~~v~v~f~~~---------------------------~~d~~e~~~~~~~~iaqe~~~~G~l~ 338 (637)
T PRK13765 288 AL--ENMHPALRSRIKGYGYEVYMRDT---------------------------MEDTPENRRKLVRFVAQEVKRDGKIP 338 (637)
T ss_pred HH--HhhhHHHHHHhccCeEEEEcccc---------------------------cCCCHHHHHHHHHHHHHHhhhccCCC
Confidence 11 235789999985 22222111 12234445555554332 246
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 567 TVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 567 ~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
.++++|...|+++|..+ ... .+...+..|++..|+|.|...|+...++.|+
T Consensus 339 ~f~~eAVa~LI~~~~R~--ag~--r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~ 389 (637)
T PRK13765 339 HFDRDAVEEIIREAKRR--AGR--KGHLTLKLRDLGGLVRVAGDIARSEGAELTT 389 (637)
T ss_pred CCCHHHHHHHHHHHHHH--hCC--ccccccCHHHHHHHHHHHHHHHHhhccceec
Confidence 89999999999988643 211 1234456899999999999999998887653
No 36
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=5.5e-13 Score=141.97 Aligned_cols=202 Identities=19% Similarity=0.255 Sum_probs=143.0
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.+|||.|++||||..+||+|++.+||.. ..|...+.. ..|++ ..+...||...-..|-+-+||||.+|+
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG-HeKGAFTGA~~~r~GrFElAdGGTLFL 323 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG-HEKGAFTGAINTRRGRFELADGGTLFL 323 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhc-ccccccccchhccCcceeecCCCeEec
Confidence 567999999999999999999999999853 233333221 12554 335556788888999999999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
|||..|+...|..|+.++.+|.|.- -|...+++.++.||||+|..- +....+-.+.+.|+-|.+ +|.+.=+
T Consensus 324 DEIGelPL~lQaKLLRvLQegEieR--vG~~r~ikVDVRiIAATNRDL------~~~V~~G~FRaDLYyRLs-V~Pl~lP 394 (550)
T COG3604 324 DEIGELPLALQAKLLRVLQEGEIER--VGGDRTIKVDVRVIAATNRDL------EEMVRDGEFRADLYYRLS-VFPLELP 394 (550)
T ss_pred hhhccCCHHHHHHHHHHHhhcceee--cCCCceeEEEEEEEeccchhH------HHHHHcCcchhhhhhccc-ccccCCC
Confidence 9999999999999999999998764 688888999999999999751 012222356778888886 3333333
Q ss_pred CChH--HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213 520 PDRD--NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS 597 (621)
Q Consensus 520 ~d~~--~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t 597 (621)
|=.+ .|.-+ +-..+++++-..-......++.+|.+.|.+| .+|-+
T Consensus 395 PLRER~~DIpl--------------------LA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y-------------~wPGN 441 (550)
T COG3604 395 PLRERPEDIPL--------------------LAGYFLEKFRRRLGRAILSLSAEALELLSSY-------------EWPGN 441 (550)
T ss_pred CcccCCccHHH--------------------HHHHHHHHHHHhcCCcccccCHHHHHHHHcC-------------CCCCc
Confidence 3222 22211 1112222222222122567899999988875 46678
Q ss_pred HHHHHHHHHHHHHHH
Q psy11213 598 ARNLLAILRLSTALA 612 (621)
Q Consensus 598 ~R~leslirla~A~A 612 (621)
+|.||.+++=|--.|
T Consensus 442 VRELen~veRavlla 456 (550)
T COG3604 442 VRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887776
No 37
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.42 E-value=7.7e-13 Score=142.83 Aligned_cols=203 Identities=15% Similarity=0.189 Sum_probs=141.8
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.+||+.|+.||||-.+||++++.++|.- ..++..+.. ..|++ ..+...||.-.-+.|.+-.|+||++|+
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG-hekGAFTGA~~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG-HEKGAFTGAITRRIGRFEQANGGTLFL 241 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc-ccccCcCCcccccCcceeEcCCceEEe
Confidence 456999999999999999999999988732 233433322 11332 112233666667889999999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
|||..|+-+.|..|+.+++++++.- -|...+.+.++.||||+|..-. .....-.+.+.|+.|+..+-+..++
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~~~r--vG~~~~i~vdvRiIaaT~~dL~------~~v~~G~FReDLyyRLnV~~i~iPp 313 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQEREFER--VGGNKPIKVDVRIIAATNRDLE------EEVAAGRFREDLYYRLNVVPLRLPP 313 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCeeEe--cCCCcccceeeEEEeecCcCHH------HHHHcCCcHHHHHhhhccceecCCc
Confidence 9999999999999999999998765 5878888999999999997510 1222235788899998544333322
Q ss_pred C-ChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213 520 P-DRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA 598 (621)
Q Consensus 520 ~-d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~ 598 (621)
. +..+|. +.+-..+|+++........+.+++++.+.|..| .+|-++
T Consensus 314 LRER~EDI--------------------p~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y-------------~WPGNV 360 (464)
T COG2204 314 LRERKEDI--------------------PLLAEHFLKRFAAELGRPPKGFSPEALAALLAY-------------DWPGNV 360 (464)
T ss_pred ccccchhH--------------------HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-------------CCChHH
Confidence 2 111221 222233455554444333678999999888764 577889
Q ss_pred HHHHHHHHHHHHHH
Q psy11213 599 RNLLAILRLSTALA 612 (621)
Q Consensus 599 R~leslirla~A~A 612 (621)
|+|+++++-+-..+
T Consensus 361 REL~N~ver~~il~ 374 (464)
T COG2204 361 RELENVVERAVILS 374 (464)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999988766554
No 38
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.40 E-value=1.7e-12 Score=140.50 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=116.5
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
+.|+||+||||||||++++++++.+....+..... .+..|..+........+.+.-..|.+..|.+||+||||+|++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 45999999999999999999999876544432211 11112111100000000001122344567899999999999975
Q ss_pred h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCC------------------
Q psy11213 448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNP------------------ 492 (621)
Q Consensus 448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~------------------ 492 (621)
. .|++|+++||...+.+...|....-...+.+|+|+|+. .|.|..
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~ 267 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA 267 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence 3 78999999997777775444333334678999999994 344431
Q ss_pred CCC----------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHH
Q psy11213 493 KRS----------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLV 554 (621)
Q Consensus 493 ~~~----------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~l 554 (621)
... .. ..+.+.|+|+.|+|. ++.....+.+...+|+..-++ ..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~-iv~f~~L~~~~L~~Il~~~~~-----------------~l~ 329 (412)
T PRK05342 268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV-VATLEELDEEALVRILTEPKN-----------------ALV 329 (412)
T ss_pred ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe-eeecCCCCHHHHHHHHHHHHH-----------------HHH
Confidence 000 00 112368889999984 444566677777776653221 234
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHH
Q psy11213 555 RRYIDLCKGK--NPTVPSSLTEHIVKA 579 (621)
Q Consensus 555 r~~i~~ar~~--~p~ls~~a~~~l~~~ 579 (621)
++|....... ...+++++.++|++.
T Consensus 330 ~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 330 KQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred HHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 4444333222 667888888888763
No 39
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.40 E-value=1.5e-12 Score=137.55 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=128.2
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+|||.|++||||+.+|++++..+++. ...++..+.. ..|++. .....+|.-....|.+..|++|++|||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~-~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH-EAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc-ccccccCcccccCCchhhCCCCEEEeC
Confidence 4599999999999999999999887652 1222222111 112211 111123333346788999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.|+...|..|+.+++.+.+.- .|.....+.++.+|+|+|..-. .....-.+.+.|+.|+....+.+++.
T Consensus 101 ei~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~rl~~~~i~lPpL 172 (329)
T TIGR02974 101 ELATASLLVQEKLLRVIEYGEFER--VGGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDRLAFDVITLPPL 172 (329)
T ss_pred ChHhCCHHHHHHHHHHHHcCcEEe--cCCCceeccceEEEEechhhHH------HHhhcCchHHHHHHHhcchhcCCCch
Confidence 999999999999999999987654 4666677888999999997510 11223357789999996444433332
Q ss_pred C-hHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--C--CCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 521 D-RDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--N--PTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 521 d-~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~--p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
. ...|. .++++. +.+ ++++. . +.+++++.+.|..+ .+
T Consensus 173 ReR~eDI~~L~~~f---------------------l~~---~~~~~~~~~~~~ls~~a~~~L~~y-------------~W 215 (329)
T TIGR02974 173 RERQEDIMLLAEHF---------------------AIR---MARELGLPLFPGFTPQAREQLLEY-------------HW 215 (329)
T ss_pred hhhhhhHHHHHHHH---------------------HHH---HHHHhCCCCCCCcCHHHHHHHHhC-------------CC
Confidence 2 12222 222232 222 23322 2 57899988888764 46
Q ss_pred ccCHHHHHHHHHHHHHHH
Q psy11213 595 YTSARNLLAILRLSTALA 612 (621)
Q Consensus 595 ~~t~R~leslirla~A~A 612 (621)
+-++|+|+++++-+-..+
T Consensus 216 PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 216 PGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchHHHHHHHHHHHHHhC
Confidence 667888888876554443
No 40
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=1.5e-12 Score=140.22 Aligned_cols=208 Identities=18% Similarity=0.247 Sum_probs=122.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
..|+||+||||+|||++++++|+.+........ ...+..|..+.-.....++.....++.+..|.+||+||||+|++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 459999999999999999999988654332211 1111122221100000011111124556677899999999999986
Q ss_pred --------------hhhhhhHhhhcceEEEEec-CCeEEecCCcceEEeecCCC---CCCCCC-----------------
Q psy11213 448 --------------ADRTAIHEVMEQQTISIAK-AGIMTRLNARVSILAAANPA---YGRYNP----------------- 492 (621)
Q Consensus 448 --------------~~~~~L~eame~q~isi~k-~gi~~~l~ar~~viAa~Np~---~g~~~~----------------- 492 (621)
..++.|+++||.....+.. .|..... ..+.+|.|+|.. .|.|+.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~-~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~ 274 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY-QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFG 274 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccC-CCeEEEEcCCceeeecccccChHHHHHHHhhhcccccc
Confidence 5899999999744444432 3433332 458899999983 344421
Q ss_pred -C-CC-------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHH
Q psy11213 493 -K-RS-------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVR 555 (621)
Q Consensus 493 -~-~~-------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr 555 (621)
. .. .. ..+.+.|+|+.|+|.+ +...+.+.+.-.+|+..-++ ..++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I-v~f~pL~~~~L~~Il~~~~n-----------------~l~k 336 (413)
T TIGR00382 275 AEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI-ATLEKLDEEALIAILTKPKN-----------------ALVK 336 (413)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE-eecCCCCHHHHHHHHHHHHH-----------------HHHH
Confidence 0 00 00 0224788999999844 55566777777777654321 1344
Q ss_pred HHHHHHH-cC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213 556 RYIDLCK-GK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606 (621)
Q Consensus 556 ~~i~~ar-~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslir 606 (621)
+|-.... +. .-.+++++.++|++.-. ......|.|.++++
T Consensus 337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~-----------~~~~GAR~Lr~iie 378 (413)
T TIGR00382 337 QYQALFKMDNVELDFEEEALKAIAKKAL-----------ERKTGARGLRSIVE 378 (413)
T ss_pred HHHHHhccCCeEEEECHHHHHHHHHhCC-----------CCCCCchHHHHHHH
Confidence 4443222 22 56778888888876411 12245677777665
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.1e-12 Score=136.48 Aligned_cols=112 Identities=29% Similarity=0.404 Sum_probs=76.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecc-c-eeecCCCeeEecCCCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-A-LVLADQGICCIDEFDKLP 446 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-a-lvlAd~gi~~IDEidk~~ 446 (621)
-.+++|+||||||||+|++.+++.+...+..-...++++ ++- .+ +++.. . .....+-|+||||+++++
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv-------kdl--r~-i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV-------KDL--RE-IIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH-------HHH--HH-HHHHHHHHHhcCCceEEEEehhhhcC
Confidence 358999999999999999999998766554322211111 110 00 11110 0 111124589999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEee--cCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA--ANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa--~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
...|.+|+..||.++|.+ ||| -||. +.|.+||+||. .+|.+...
T Consensus 118 K~QQD~lLp~vE~G~iil---------------IGATTENPs-------------F~ln~ALlSR~-~vf~lk~L 163 (436)
T COG2256 118 KAQQDALLPHVENGTIIL---------------IGATTENPS-------------FELNPALLSRA-RVFELKPL 163 (436)
T ss_pred hhhhhhhhhhhcCCeEEE---------------EeccCCCCC-------------eeecHHHhhhh-heeeeecC
Confidence 999999999999998865 333 3887 57999999999 56666443
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.37 E-value=7.2e-12 Score=128.44 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=112.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceee-----eccceeecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVL-----EGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l-----~~GalvlAd~gi~~IDEidk 444 (621)
.|++|+||||||||++++.+++.+... +..+... +. .+......+.|.- ..+.+-.|.+||++|||++.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~----~~~~~~~-~v-~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~ 116 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM----NVLSKGH-LI-EVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYS 116 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc----CcccCCc-eE-EecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhh
Confidence 499999999999999999999875221 1111100 00 0000000111110 12334456789999999998
Q ss_pred CC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 445 LP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 445 ~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
+. .+....|+..|++.. .++.+++|.++.. ...-..++++|.|||+..+.+
T Consensus 117 L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~--------~~~~~~~~p~L~sRf~~~i~f 175 (261)
T TIGR02881 117 LARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDE--------MDYFLSLNPGLRSRFPISIDF 175 (261)
T ss_pred hccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcch--------hHHHHhcChHHHhccceEEEE
Confidence 75 235577888887642 3356666666542 111235789999999754444
Q ss_pred cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11213 517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYT 596 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~ 596 (621)
+.++.++...|+++.+. +....+++++.++|.+.+..++... .....
T Consensus 176 -~~~~~~el~~Il~~~~~----------------------------~~~~~l~~~a~~~l~~~~~~~~~~~----~~~~g 222 (261)
T TIGR02881 176 -PDYTVEELMEIAERMVK----------------------------EREYKLTEEAKWKLREHLYKVDQLS----SREFS 222 (261)
T ss_pred -CCCCHHHHHHHHHHHHH----------------------------HcCCccCHHHHHHHHHHHHHHHhcc----CCCCc
Confidence 45555555555554432 1235688888888888776665321 12234
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q psy11213 597 SARNLLAILRLSTALARLRL 616 (621)
Q Consensus 597 t~R~leslirla~A~Akl~l 616 (621)
+.|.+..++..|..+...++
T Consensus 223 n~R~~~n~~e~a~~~~~~r~ 242 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAVRL 242 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67888888888877766553
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.34 E-value=1.3e-11 Score=130.79 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=97.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~ 448 (621)
|+||+||||||||++++.+++.+...... .+..... .+.. . +.+ .+..+++++|||++.++..
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------------~~~l--~-~~l~~l~~~~vl~IDEi~~l~~~ 117 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------------PGDL--A-AILTNLEEGDVLFIDEIHRLSPV 117 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------------hHHH--H-HHHHhcccCCEEEEecHhhcchH
Confidence 89999999999999999999987543321 1110000 0000 0 000 1246789999999999988
Q ss_pred hhhhhHhhhcceEEEE--ecCC----eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCCh
Q psy11213 449 DRTAIHEVMEQQTISI--AKAG----IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDR 522 (621)
Q Consensus 449 ~~~~L~eame~q~isi--~k~g----i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~ 522 (621)
....++.+|++..+.+ .++. ....+| ++.+|+|+|+.. .++++|.|||++. +..+.++.
T Consensus 118 ~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~-------------~l~~~L~sRf~~~-~~l~~~~~ 182 (328)
T PRK00080 118 VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG-------------LLTSPLRDRFGIV-QRLEFYTV 182 (328)
T ss_pred HHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc-------------cCCHHHHHhcCee-eecCCCCH
Confidence 8889999999876543 2211 111234 478888888763 4889999999744 55567777
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
++-.++.+...... ...++.+.+..++..++
T Consensus 183 ~e~~~il~~~~~~~---------~~~~~~~~~~~ia~~~~ 213 (328)
T PRK00080 183 EELEKIVKRSARIL---------GVEIDEEGALEIARRSR 213 (328)
T ss_pred HHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHcC
Confidence 77666666554321 12355565655555443
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.33 E-value=7.5e-12 Score=129.72 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=85.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-----eeccceeecCCCeeEecCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGALVLADQGICCIDEFD 443 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~GalvlAd~gi~~IDEid 443 (621)
+.|+||.||||||||++|+++++.+...-+. ... -...+..+...+.+. ...+.+-.|.+||+||||++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~----~~~--~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~ 132 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYI----KKG--HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAY 132 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCC----CCC--ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccc
Confidence 4599999999999999999999885321111 000 000000000011111 01234445789999999999
Q ss_pred CC---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 444 KL---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 444 k~---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
.+ ..+.+..|+..|+++. .++.||+|.++.. ...-..+.++|.+||+..+
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHV 191 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceE
Confidence 86 4556788899998642 3467778776541 1122356799999998555
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
.+ +.++.++...|+.+.+.
T Consensus 192 ~F-~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 192 DF-PDYTPEELLQIAKIMLE 210 (287)
T ss_pred Ec-CCcCHHHHHHHHHHHHH
Confidence 44 55567777777777764
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.33 E-value=7.7e-12 Score=129.62 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=110.4
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEec-CC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTT-GR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
..|+||.||||||||++|+.+++.+...-+.. +. ..+...+.+...-. +.. ...+.+-.|.+|++||||++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~--~~~--~~~~~~~~a~~gvL~iDEi~~L 133 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGH--TAP--KTKEILKRAMGGVLFIDEAYYL 133 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhccc--chH--HHHHHHHHccCcEEEEechhhh
Confidence 35999999999999999998888754311100 00 00000011100000 000 0123445578899999999977
Q ss_pred ---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 446 ---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 446 ---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
..+.+..|++.|+++. .++.||+|+++.. ...-..+.++|.+||+..+.+
T Consensus 134 ~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~f 192 (284)
T TIGR02880 134 YRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDF 192 (284)
T ss_pred ccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEe
Confidence 3445678899998642 3467888877641 111235789999999855544
Q ss_pred cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11213 517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYT 596 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~ 596 (621)
+.++.++...|.++.+.. ..+.+++++.+.+.++....+. ..++-
T Consensus 193 -p~l~~edl~~I~~~~l~~----------------------------~~~~l~~~a~~~L~~~l~~~~~------~~~~G 237 (284)
T TIGR02880 193 -PDYSEAELLVIAGLMLKE----------------------------QQYRFSAEAEEAFADYIALRRT------QPHFA 237 (284)
T ss_pred -CCcCHHHHHHHHHHHHHH----------------------------hccccCHHHHHHHHHHHHHhCC------CCCCC
Confidence 445566666666665432 1245666666666654322211 23455
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q psy11213 597 SARNLLAILRLSTALARLRL 616 (621)
Q Consensus 597 t~R~leslirla~A~Akl~l 616 (621)
+.|.+.++++-+......++
T Consensus 238 N~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 238 NARSIRNAIDRARLRQANRL 257 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67888888777766655544
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.6e-12 Score=137.83 Aligned_cols=137 Identities=26% Similarity=0.411 Sum_probs=88.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--ccce-e---eeccceeec------CCCeeE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEM-V---LEGGALVLA------DQGICC 438 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~-~---l~~GalvlA------d~gi~~ 438 (621)
-+||+||||+|||+|++.+|+.+.|-.+-...|. ++|.. .|.. + -.||-++.+ .+-+.+
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG---------vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~L 422 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG---------VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFL 422 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc---------cccHHHhccccccccccCChHHHHHHHHhCCcCCeEE
Confidence 6899999999999999999999988765432211 12210 1111 1 124544433 456999
Q ss_pred ecCCCCCChhhh----hhhHhhhcc-eEEEEe--cCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 439 IDEFDKLPDADR----TAIHEVMEQ-QTISIA--KAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 439 IDEidk~~~~~~----~~L~eame~-q~isi~--k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
|||||||..+.| ++|+|+++- |.-+.. --...+.| +.+.+|||||... .+|.|||||..
T Consensus 423 LDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl~-------------tIP~PLlDRME 488 (782)
T COG0466 423 LDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSLD-------------TIPAPLLDRME 488 (782)
T ss_pred eechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hheEEEeecCccc-------------cCChHHhccee
Confidence 999999988776 699999962 221111 01111222 3488999999873 59999999996
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~i 532 (621)
+|- ..-..+++-.+||+..
T Consensus 489 iI~--lsgYt~~EKl~IAk~~ 507 (782)
T COG0466 489 VIR--LSGYTEDEKLEIAKRH 507 (782)
T ss_pred eee--ecCCChHHHHHHHHHh
Confidence 433 3344556666777744
No 47
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.29 E-value=3.4e-11 Score=127.32 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=125.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+|||.|++||||+.+|++++...++. . ..++..+.. ..+++.. ....+|.-....|.+..|++|++|||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~ 107 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLD 107 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc-ccccCCcccccCCchhccCCCeEEeC
Confidence 4599999999999999999999887742 1 122222111 0122111 11112322334688889999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.++...|..|+.+++.+.+.- .|.....+.++.||+|+|..-. .....-.+.+.|+.||....+.+++.
T Consensus 108 ~i~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~l~~~~i~lPpL 179 (326)
T PRK11608 108 ELATAPMLVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDRLAFDVVQLPPL 179 (326)
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHhcCCCEEECCCh
Confidence 999999999999999999887653 4555677788999999987510 11223357889999996444443332
Q ss_pred -ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 521 -DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK----NPTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 521 -d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~----~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
+...|. .+++|.+ +++ +++. .+.+++++.+.|..+ .+
T Consensus 180 ReR~eDI~~L~~~fl---------------------~~~---~~~~~~~~~~~~s~~al~~L~~y-------------~W 222 (326)
T PRK11608 180 RERQSDIMLMAEHFA---------------------IQM---CRELGLPLFPGFTERARETLLNY-------------RW 222 (326)
T ss_pred hhhhhhHHHHHHHHH---------------------HHH---HHHhCCCCCCCCCHHHHHHHHhC-------------CC
Confidence 222222 2333332 222 2222 156888888877764 46
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy11213 595 YTSARNLLAILRLSTAL 611 (621)
Q Consensus 595 ~~t~R~leslirla~A~ 611 (621)
+-++|+|+.+++-+-..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 66788888887766543
No 48
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.28 E-value=2.9e-11 Score=128.53 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=130.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc------EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS------QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
+.|||+.|++||||+.+|+.++....|. .+.|+..+.. ..|+| ..+...+|...-++|.+-.|+||++|+
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG-~~kGaftGa~~~k~Glfe~A~GGtLfL 179 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG-HEKGAFTGAQGGKAGLFEQANGGTLFL 179 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc-cccceeecccCCcCchheecCCCEEeh
Confidence 4599999999999999999999876652 2344443322 11333 223334565566899999999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||+..|++..|..|+.+||.+++.- -|.....+.++.+++|+|-.- .+.+.-...|++|- ++..+..
T Consensus 180 DEI~~LP~~~Q~kLl~~le~g~~~r--vG~~~~~~~dVRli~AT~~~l---------~~~~~~g~dl~~rl--~~~~I~L 246 (403)
T COG1221 180 DEIHRLPPEGQEKLLRVLEEGEYRR--VGGSQPRPVDVRLICATTEDL---------EEAVLAGADLTRRL--NILTITL 246 (403)
T ss_pred hhhhhCCHhHHHHHHHHHHcCceEe--cCCCCCcCCCceeeeccccCH---------HHHHHhhcchhhhh--cCceecC
Confidence 9999999999999999999998873 355778899999999998651 11111113555532 2223333
Q ss_pred CChH---HHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213 520 PDRD---NDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRD 592 (621)
Q Consensus 520 ~d~~---~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~ 592 (621)
|.-. .|+ .+++|.+ + .+|++. .+..++++...+..|
T Consensus 247 PpLrER~~Di~~L~e~Fl---------------------~---~~~~~l~~~~~~~~~~a~~~L~~y------------- 289 (403)
T COG1221 247 PPLRERKEDILLLAEHFL---------------------K---SEARRLGLPLSVDSPEALRALLAY------------- 289 (403)
T ss_pred CChhhchhhHHHHHHHHH---------------------H---HHHHHcCCCCCCCCHHHHHHHHhC-------------
Confidence 3221 111 2233332 2 334443 334445676666654
Q ss_pred CCccCHHHHHHHHHHHHHHHHhcCC
Q psy11213 593 MSYTSARNLLAILRLSTALARLRLC 617 (621)
Q Consensus 593 ~~~~t~R~leslirla~A~Akl~lr 617 (621)
.++-++|+|++++..+-+.|.....
T Consensus 290 ~~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 290 DWPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred CCCCcHHHHHHHHHHHHHHhccccC
Confidence 4556899999999999998875544
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.28 E-value=5.7e-11 Score=124.48 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=94.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~~ 449 (621)
|++|+||||||||+|++.+++.+........... ... .+.+. +.+ .+..+++++|||++.++++.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~---------~~~--~~~l~---~~l~~~~~~~vl~iDEi~~l~~~~ 97 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA---------LEK--PGDLA---AILTNLEEGDVLFIDEIHRLSPAV 97 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch---------hcC--chhHH---HHHHhcccCCEEEEehHhhhCHHH
Confidence 8999999999999999999998654332211000 000 01100 000 12346899999999999999
Q ss_pred hhhhHhhhcceEEEE--ecC----CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213 450 RTAIHEVMEQQTISI--AKA----GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD 523 (621)
Q Consensus 450 ~~~L~eame~q~isi--~k~----gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~ 523 (621)
+..|+.+|+.....+ ..+ .....++. +.+++++|... .+++++.|||.+ .+..+.++.+
T Consensus 98 ~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~-------------~l~~~l~sR~~~-~~~l~~l~~~ 162 (305)
T TIGR00635 98 EELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAG-------------MLTSPLRDRFGI-ILRLEFYTVE 162 (305)
T ss_pred HHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCcc-------------ccCHHHHhhcce-EEEeCCCCHH
Confidence 999999998765432 211 11123343 66777776542 578999999964 4455677777
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
+-.++.+...... ...++.+.+..++..+
T Consensus 163 e~~~il~~~~~~~---------~~~~~~~al~~ia~~~ 191 (305)
T TIGR00635 163 ELAEIVSRSAGLL---------NVEIEPEAALEIARRS 191 (305)
T ss_pred HHHHHHHHHHHHh---------CCCcCHHHHHHHHHHh
Confidence 7666666554321 1245566665555544
No 50
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.24 E-value=3.5e-11 Score=139.95 Aligned_cols=141 Identities=24% Similarity=0.396 Sum_probs=90.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC--ccccceEEEeecCcccceeeecccee------ecCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS--SGVGLTAAVMKDPITNEMVLEGGALV------LADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~--s~~gLta~~~~~~~~g~~~l~~Galv------lAd~gi~~IDEi 442 (621)
.++|+||||+|||++++.+++.+.+..+....+. ....+.+.... ..|. .+|.+. ...+.|++|||+
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~--~~g~---~~G~~~~~l~~~~~~~~villDEi 425 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRT--YIGS---MPGKLIQKMAKVGVKNPLFLLDEI 425 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhc--cCCC---CCcHHHHHHHhcCCCCCEEEEECh
Confidence 6999999999999999999999877654322111 11112211100 0011 233222 123569999999
Q ss_pred CCCChhhh----hhhHhhhcc-eEEEEecC--CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 443 DKLPDADR----TAIHEVMEQ-QTISIAKA--GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 443 dk~~~~~~----~~L~eame~-q~isi~k~--gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
|+++.+.+ ++|+++|+. |.....-. .....+ .++.+|||+|.. .||+||++||+ + +
T Consensus 426 dk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~--------------~i~~aLl~R~~-i-i 488 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM--------------NIPAPLLDRME-V-I 488 (784)
T ss_pred hhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEEcCCCC--------------CCCHHHhccee-e-e
Confidence 99998764 899999984 33333211 111222 458899999975 59999999995 3 3
Q ss_pred ecCCCChHHHHHHHHHHH
Q psy11213 516 IQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il 533 (621)
.....+.++-.+|+++.+
T Consensus 489 ~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 489 RLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ecCCCCHHHHHHHHHHhh
Confidence 455566777788887665
No 51
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.23 E-value=5.4e-11 Score=134.25 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=126.7
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.+|||.|++||||+.++++++..+++. . ..++..+.. ..|++.. +...+|...-..|.+..|++|++||
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~l 296 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFL 296 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEE
Confidence 35699999999999999999999987642 1 222221111 0122111 1111222233567788999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.++...|..|+.+++.+.+.- .|.....+.++.+|+|+|..-. .....-.+.+.|+.|+..+.+..+.
T Consensus 297 dei~~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPp 368 (534)
T TIGR01817 297 DEIGEISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATNRDLE------EAVAKGEFRADLYYRINVVPIFLPP 368 (534)
T ss_pred echhhCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCCCCHH------HHHHcCCCCHHHHHHhcCCeeeCCC
Confidence 9999999999999999999887654 3444556677899999986511 1222335788999999755544443
Q ss_pred CC-hHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213 520 PD-RDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSY 595 (621)
Q Consensus 520 ~d-~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~ 595 (621)
.. ..+|. .+++|.+. ++ +++. .+.+++++.+.|..+ .++
T Consensus 369 LreR~eDi~~L~~~~l~---------------------~~---~~~~~~~~~~s~~a~~~L~~~-------------~WP 411 (534)
T TIGR01817 369 LRERREDIPLLAEAFLE---------------------KF---NRENGRPLTITPSAIRVLMSC-------------KWP 411 (534)
T ss_pred cccccccHHHHHHHHHH---------------------HH---HHHcCCCCCCCHHHHHHHHhC-------------CCC
Confidence 32 22333 44554432 22 2111 367888888877764 456
Q ss_pred cCHHHHHHHHHHHHH
Q psy11213 596 TSARNLLAILRLSTA 610 (621)
Q Consensus 596 ~t~R~leslirla~A 610 (621)
-++|+|+++++-+-.
T Consensus 412 GNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 412 GNVRELENCLERTAT 426 (534)
T ss_pred ChHHHHHHHHHHHHH
Confidence 678888888776544
No 52
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.23 E-value=9e-11 Score=130.81 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=126.1
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh--------cccc---E--EecCCCCccccceEEEeecCccccee-----eeccce
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL--------ARRS---Q--YTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGAL 429 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~--------~pr~---~--~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~Gal 429 (621)
.+.+|||.|++||||+.+|++++.. +++. . ..++..+.. +..+..+....|.|+ -.+|.+
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~--lleseLFG~~~gaftga~~~~~~Gl~ 318 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES--LLEAELFGYEEGAFTGSRRGGRAGLF 318 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh--hHHHHhcCCccccccCccccccCCch
Confidence 3569999999999999999999987 4432 1 122221111 111111111122221 356888
Q ss_pred eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
-.|++|++||||++.|+...|..|+.+++++.+.- .|.....+.++.+|+|+|..-. .....-.+.+.|+.|
T Consensus 319 e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~------~~v~~g~Fr~dL~yr 390 (538)
T PRK15424 319 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLE------EDVRQGRFRRDLFYR 390 (538)
T ss_pred hccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe--cCCCceeccceEEEEecCCCHH------HHHhcccchHHHHHH
Confidence 89999999999999999999999999999988764 4666777889999999986511 112222467788888
Q ss_pred ccEEEEecCCCCh-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHh
Q psy11213 510 FDLLWLIQDKPDR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVA 587 (621)
Q Consensus 510 FDli~~~~d~~d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~ 587 (621)
+..+-+..++..+ .+|. .+++|.+ +++ +++.+..+++++...+.+....|..-
T Consensus 391 L~~~~I~lPPLReR~eDI~~L~~~fl---------------------~~~---~~~~~~~~~~~a~~~~~~a~~~L~~y- 445 (538)
T PRK15424 391 LSILRLQLPPLRERVADILPLAESFL---------------------KQS---LAALSAPFSAALRQGLQQCETLLLHY- 445 (538)
T ss_pred hcCCeecCCChhhchhHHHHHHHHHH---------------------HHH---HHHcCCCCCHHHHHhhHHHHHHHHhC-
Confidence 8654444433322 1121 2233332 221 22333457777776665554444432
Q ss_pred hcCCCCCccCHHHHHHHHHHHHH
Q psy11213 588 RNSRDMSYTSARNLLAILRLSTA 610 (621)
Q Consensus 588 ~~~~~~~~~t~R~leslirla~A 610 (621)
.+|-++|+|+++++-+-.
T Consensus 446 -----~WPGNvREL~nvier~~i 463 (538)
T PRK15424 446 -----DWPGNVRELRNLMERLAL 463 (538)
T ss_pred -----CCCchHHHHHHHHHHHHH
Confidence 466678888888775544
No 53
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.22 E-value=1.4e-10 Score=129.31 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=128.2
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCccccceEEEeecCccccee-----eeccceeecCCCee
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSGVGLTAAVMKDPITNEMV-----LEGGALVLADQGIC 437 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~~gLta~~~~~~~~g~~~-----l~~GalvlAd~gi~ 437 (621)
.+.+|||.|++||||+.+|++++..+++. . ..++..+.. +..+..+....|.|+ -.+|.+-.|++|++
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~--lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTL 311 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES--LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTL 311 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh--HHHHHhcCCcccccccccccccccchhhcCCceE
Confidence 45699999999999999999999886552 1 222322211 111111111122221 35678888999999
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
||||++.|+...|..|+.+++++.+.- .|.....+.++.+|+|+|..-. .....-.+.+.|+.|+..+-+..
T Consensus 312 fLdeI~~Lp~~~Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat~~~l~------~~v~~g~fr~dL~~rL~~~~I~l 383 (526)
T TIGR02329 312 FLDEIGEMPLPLQTRLLRVLEEREVVR--VGGTEPVPVDVRVVAATHCALT------TAVQQGRFRRDLFYRLSILRIAL 383 (526)
T ss_pred EecChHhCCHHHHHHHHHHHhcCcEEe--cCCCceeeecceEEeccCCCHH------HHhhhcchhHHHHHhcCCcEEeC
Confidence 999999999999999999999987654 4555667788999999986521 12223357778888987544444
Q ss_pred CCC-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213 518 DKP-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSY 595 (621)
Q Consensus 518 d~~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~ 595 (621)
++. +..+|. .+++|.+. ++ ++.....+++++.+.+...+-.|..- .+|
T Consensus 384 PPLReR~eDI~~L~~~fl~---------------------~~---~~~~~~~~~~~a~~~~~~~~~~L~~y------~WP 433 (526)
T TIGR02329 384 PPLRERPGDILPLAAEYLV---------------------QA---AAALRLPDSEAAAQVLAGVADPLQRY------PWP 433 (526)
T ss_pred CCchhchhHHHHHHHHHHH---------------------HH---HHHcCCCCCHHHHHHhHHHHHHHHhC------CCC
Confidence 433 222232 23344432 21 22223457778777755544444332 466
Q ss_pred cCHHHHHHHHHHHHHH
Q psy11213 596 TSARNLLAILRLSTAL 611 (621)
Q Consensus 596 ~t~R~leslirla~A~ 611 (621)
-++|+|+++++-+-..
T Consensus 434 GNvrEL~nvier~~i~ 449 (526)
T TIGR02329 434 GNVRELRNLVERLALE 449 (526)
T ss_pred chHHHHHHHHHHHHHh
Confidence 6788888887765543
No 54
>KOG0737|consensus
Probab=99.20 E-value=6.3e-12 Score=129.70 Aligned_cols=164 Identities=23% Similarity=0.268 Sum_probs=116.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec--------CCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--------DQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--------d~gi~~IDEi 442 (621)
+|||.||||||||++|+++|+.+..... ++..+.. +++|.=++-.++.| ...|+||||+
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fI---------nv~~s~l----t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEv 195 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFI---------NVSVSNL----TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEV 195 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcc---------eeecccc----chhhHHHHHHHHHHHHhhhhhcCcceeehhhH
Confidence 8999999999999999999998543221 1222221 23444333333322 4689999999
Q ss_pred CCCChhhhhhhHhhhcc---eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 443 DKLPDADRTAIHEVMEQ---QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 443 dk~~~~~~~~L~eame~---q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
|.+.-.-+..=||||.. |-.. ..+|..+.-++++.|+||+|.. .+|.+|+++|+ -..++++.
T Consensus 196 ds~L~~R~s~dHEa~a~mK~eFM~-~WDGl~s~~~~rVlVlgATNRP-------------~DlDeAiiRR~-p~rf~V~l 260 (386)
T KOG0737|consen 196 DSFLGQRRSTDHEATAMMKNEFMA-LWDGLSSKDSERVLVLGATNRP-------------FDLDEAIIRRL-PRRFHVGL 260 (386)
T ss_pred HHHHhhcccchHHHHHHHHHHHHH-HhccccCCCCceEEEEeCCCCC-------------ccHHHHHHHhC-cceeeeCC
Confidence 98766557777888642 2222 3467777778889999999987 48999999999 47788899
Q ss_pred CChHHHHHHHHHHHhhhccCCCCC-----CCCCCCCHHHHHHHHHHHH
Q psy11213 520 PDRDNDLKLAQHITYVHKHSRQPP-----TELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 520 ~d~~~d~~ia~~il~~~~~~~~~~-----~~~~~i~~~~lr~~i~~ar 562 (621)
|+.+..++|.+-+++.......-. .....++-..|+..+..|.
T Consensus 261 P~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 261 PDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred CchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 999999999999886543221110 1245688888888887664
No 55
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.20 E-value=1.9e-10 Score=128.82 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=131.4
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.+|||.|++||||+.++++++..+++.. ..+...+.. ..|++.. +...+|...-..|.+-.|+||++||
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~l 287 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLFL 287 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEEe
Confidence 456999999999999999999999877531 222222211 1122211 1112232233567788999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.++.+.|..|+.+++++.+.- -|.....+.++.||||+|..-. .....-.+.+.|+.|+..+-+.+++
T Consensus 288 deI~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~rl~~~~i~lPp 359 (509)
T PRK05022 288 DEIGELPLALQAKLLRVLQYGEIQR--VGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHRLSVFPLSVPP 359 (509)
T ss_pred cChhhCCHHHHHHHHHHHhcCCEee--CCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhcccccEeeCCC
Confidence 9999999999999999999887643 3555667778999999987511 1122235788999998654444333
Q ss_pred C-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213 520 P-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS 597 (621)
Q Consensus 520 ~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t 597 (621)
. +..+|. .+++|. ++++........+.+++++.+.|..+ .++-+
T Consensus 360 LreR~eDI~~L~~~f---------------------l~~~~~~~~~~~~~~s~~a~~~L~~y-------------~WPGN 405 (509)
T PRK05022 360 LRERGDDVLLLAGYF---------------------LEQNRARLGLRSLRLSPAAQAALLAY-------------DWPGN 405 (509)
T ss_pred chhchhhHHHHHHHH---------------------HHHHHHHcCCCCCCCCHHHHHHHHhC-------------CCCCc
Confidence 2 222332 233333 22321111112478899998888764 56778
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11213 598 ARNLLAILRLSTALAR 613 (621)
Q Consensus 598 ~R~leslirla~A~Ak 613 (621)
+|+|+++++-+-..|.
T Consensus 406 vrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 406 VRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999998887766654
No 56
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.19 E-value=1.2e-11 Score=118.03 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=90.4
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+|||+|++||||+.+|+++++.++|. ...++..+.. ..|++.. ....+|....+.|.+..|++|+++||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~-~~~~~~~~~~~~G~l~~A~~GtL~Ld 100 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE-KGAFTGARSDKKGLLEQANGGTLFLD 100 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC-SSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc-cccccccccccCCceeeccceEEeec
Confidence 4599999999999999999999987763 1223322211 1234321 22223444456799999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
||+.|++..|..|+.+|+++++.. .|.....+.++.||||+|..-. ...++-.+.+.|+.|..
T Consensus 101 ~I~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~st~~~l~------~~v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 101 EIEDLPPELQAKLLRVLEEGKFTR--LGSDKPVPVDVRIIASTSKDLE------ELVEQGRFREDLYYRLN 163 (168)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEEC--CTSSSEEE--EEEEEEESS-HH------HHHHTTSS-HHHHHHHT
T ss_pred chhhhHHHHHHHHHHHHhhchhcc--ccccccccccceEEeecCcCHH------HHHHcCCChHHHHHHhc
Confidence 999999999999999999998765 3444566778999999996410 12233357778887764
No 57
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.18 E-value=2.3e-11 Score=116.54 Aligned_cols=138 Identities=16% Similarity=0.166 Sum_probs=84.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc-----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR-----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p-----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
.++||+||+|+|||.+++.+++.+- +.+.......+.. --. .........-.+|..-.+++||+++|||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~-~~~---~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG-DDV---ESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH-HHC---SCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc-chH---HhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3899999999999999999999965 1111111110000 000 000000111123444455678999999999
Q ss_pred CCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC-----CC---c------ccc
Q psy11213 445 LPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK-----RS---I------EQN 499 (621)
Q Consensus 445 ~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~-----~~---~------~~~ 499 (621)
+.+ ..++.|+.+||.++++-. .|....+. ++.+|+|+|-........ .. . .-+
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~~-n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDTS-NIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE 157 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEGT-TEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEeC-CceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence 999 999999999999999964 45444443 489999999752110000 00 0 001
Q ss_pred cCCCHhHhccccEE
Q psy11213 500 IQLPAALLSRFDLL 513 (621)
Q Consensus 500 ~~L~~aLlsRFDli 513 (621)
..+++.|+.|||.|
T Consensus 158 ~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 158 YGFRPEFLGRIDVI 171 (171)
T ss_dssp HTS-HHHHTTSSEE
T ss_pred cCCCHHHHccCCcC
Confidence 24889999999854
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.16 E-value=1.5e-10 Score=135.65 Aligned_cols=144 Identities=22% Similarity=0.355 Sum_probs=88.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC--ccccceEE--EeecCcccceeeecccee--ecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS--SGVGLTAA--VMKDPITNEMVLEGGALV--LADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~--s~~gLta~--~~~~~~~g~~~l~~Galv--lAd~gi~~IDEidk 444 (621)
++||+||||||||++++++++.+.+..+....+. ....+.+. .......|.. .+ ++. ...+.|++|||||+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i-~~--~l~~~~~~~~villDEidk 425 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRI-IQ--GLKKAKTKNPLFLLDEIDK 425 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchH-HH--HHHHhCcCCCEEEEechhh
Confidence 7999999999999999999999866554322111 00001110 0000001110 00 111 12456999999999
Q ss_pred CChhhh----hhhHhhhcc---eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 445 LPDADR----TAIHEVMEQ---QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 445 ~~~~~~----~~L~eame~---q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
+..+.+ ++|+++|+. +.+.-...+....+ .++.+|+|+|+.. .++++|+|||+ ++..
T Consensus 426 ~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~--vi~~ 489 (775)
T TIGR00763 426 IGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSID-------------TIPRPLLDRME--VIEL 489 (775)
T ss_pred cCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCch-------------hCCHHHhCCee--EEec
Confidence 986544 789999974 22221111222222 3578899999873 58999999995 3466
Q ss_pred CCCChHHHHHHHHHHH
Q psy11213 518 DKPDRDNDLKLAQHIT 533 (621)
Q Consensus 518 d~~d~~~d~~ia~~il 533 (621)
..++.++...|++..+
T Consensus 490 ~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 490 SGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7777888888886543
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.15 E-value=2.6e-10 Score=131.84 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=110.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-----ccccceEEEeecCccccee-eecccee----ecCCCeeEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-----SGVGLTAAVMKDPITNEMV-LEGGALV----LADQGICCID 440 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-----s~~gLta~~~~~~~~g~~~-l~~Galv----lAd~gi~~ID 440 (621)
++||+||||||||.+++.+|+.+........... +...|.++ ..|... -+.|.+. ....+|+++|
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~-----~~gyvg~~~~g~L~~~v~~~p~sVlllD 564 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA-----PPGYVGFDQGGLLTDAVIKHPHAVLLLD 564 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC-----CCCcccccccchHHHHHHhCCCcEEEec
Confidence 7999999999999999999998754432211110 00112111 011111 1223332 2246899999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCC-------CCCCCC---ccc--ccCCCHhHhc
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR-------YNPKRS---IEQ--NIQLPAALLS 508 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~-------~~~~~~---~~~--~~~L~~aLls 508 (621)
||+|++++.++.|+.+|+++.++.. .|....+ .++.+|+|+|..... |..... ..+ ...++++|+.
T Consensus 565 Eieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~ 642 (758)
T PRK11034 565 EIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN 642 (758)
T ss_pred cHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc
Confidence 9999999999999999999999864 4543333 347899999943100 110000 000 1248999999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK 578 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~ 578 (621)
|+|-++. ....+.+.-.+|+...+. .+.+.++ .+.....+++++.++|.+
T Consensus 643 Rid~ii~-f~~L~~~~l~~I~~~~l~------------------~~~~~l~-~~~i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 643 RLDNIIW-FDHLSTDVIHQVVDKFIV------------------ELQAQLD-QKGVSLEVSQEARDWLAE 692 (758)
T ss_pred cCCEEEE-cCCCCHHHHHHHHHHHHH------------------HHHHHHH-HCCCCceECHHHHHHHHH
Confidence 9995544 456666666777765542 1222221 122377889999988875
No 60
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-10 Score=117.71 Aligned_cols=251 Identities=18% Similarity=0.220 Sum_probs=140.7
Q ss_pred ccceeeecccccccccccCceEEEeeeeeccccCCce-e---eecCcccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 327 PRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFR-Q---VTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 327 p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~-~---~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
|+.|.-+|.+..++.-. ..++.-.+||....+-.+. . .--+..||||+||+|+|||.||+.+|+++.-.+-..+.
T Consensus 52 P~eik~~Ld~YVIGQe~-AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQ-AKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred hHHHHHHhhhheecchh-hhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 77777776544443222 2344445555322110000 0 11166799999999999999999999997665543332
Q ss_pred -CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC--------------hhhhhhhHhhhcceEEEEecC
Q psy11213 403 -GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--------------DADRTAIHEVMEQQTISIAKA 467 (621)
Q Consensus 403 -~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--------------~~~~~~L~eame~q~isi~k~ 467 (621)
.-+.+|..+--+.+-...-..--...+..|.+||++||||||+. +..|.+|+..||.-..++.-.
T Consensus 131 TtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq 210 (408)
T COG1219 131 TTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210 (408)
T ss_pred cchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence 22333333211100000000001234567889999999999964 446889999999888888655
Q ss_pred CeEEecCCcceEEeecCCC---CCCCCC-------------------CCC---------cc--------cccCCCHhHhc
Q psy11213 468 GIMTRLNARVSILAAANPA---YGRYNP-------------------KRS---------IE--------QNIQLPAALLS 508 (621)
Q Consensus 468 gi~~~l~ar~~viAa~Np~---~g~~~~-------------------~~~---------~~--------~~~~L~~aLls 508 (621)
|...--+-.+.-+-|+|-. +|.|+. .++ +. -.+.|-|.+.-
T Consensus 211 GGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIG 290 (408)
T COG1219 211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIG 290 (408)
T ss_pred CCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhc
Confidence 5544445557778888863 454431 000 00 01245566666
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKV 586 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~ 586 (621)
|+. ++...+..|++....|... -....+++|-..-..- .-.++++|...|++...+ +.
T Consensus 291 RlP-via~L~~Lde~aLv~ILte-----------------PkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~--rk 350 (408)
T COG1219 291 RLP-VIATLEELDEDALVQILTE-----------------PKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIE--RK 350 (408)
T ss_pred ccc-eeeehhhcCHHHHHHHHhc-----------------ccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHH--hc
Confidence 764 4444455555554444321 1234566666554433 445688888888775432 21
Q ss_pred hhcCCCCCccCHHHHHHHHHH
Q psy11213 587 ARNSRDMSYTSARNLLAILRL 607 (621)
Q Consensus 587 ~~~~~~~~~~t~R~leslirl 607 (621)
+..|.|.+++.-
T Consensus 351 ---------TGARGLRsI~E~ 362 (408)
T COG1219 351 ---------TGARGLRSIIEE 362 (408)
T ss_pred ---------cchhHHHHHHHH
Confidence 357888777653
No 61
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=6.9e-10 Score=114.17 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=116.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecC---CCeeEecCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLAD---QGICCIDEFDK 444 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd---~gi~~IDEidk 444 (621)
+.|+||+||+|||||.+++..-+.++...|.... ..++ ..++........+......|....+. +-|+|||+++.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~-~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA-QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T-THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC-CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence 3599999999999999999877665554332111 0111 01111111111111222223322222 24999999998
Q ss_pred CChhh------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213 445 LPDAD------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD 518 (621)
Q Consensus 445 ~~~~~------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d 518 (621)
-.++. ...|.+.|+.+-+--.+......+ .++.++||+||..|+ ..+++.|++.| ..+..+
T Consensus 112 p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr----------~~is~R~~r~f--~i~~~~ 178 (272)
T PF12775_consen 112 PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGR----------NPISPRFLRHF--NILNIP 178 (272)
T ss_dssp S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTE--EEEE--
T ss_pred CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCC----------CCCChHHhhhe--EEEEec
Confidence 65443 345666677765544322222333 348899999998776 35899999999 667778
Q ss_pred CCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC--CCCCcc
Q psy11213 519 KPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS--RDMSYT 596 (621)
Q Consensus 519 ~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~--~~~~~~ 596 (621)
.|+.+.-..|-..++..+.....- + .. -..+.+.+.+..++.|..+++.-.-. +.....
T Consensus 179 ~p~~~sl~~If~~il~~~l~~~~f-------~-----------~~-v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~F 239 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQSHLKNGGF-------P-----------ED-VQKLADKLVQATIELYQKIRQQFLPTPSKPHYTF 239 (272)
T ss_dssp --TCCHHHHHHHHHHHHHTCHTTS-------S-----------GG-GCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTS
T ss_pred CCChHHHHHHHHHHHhhhcccCCC-------C-----------hH-HHHHHHHHHHHHHHHHHhhhcccCCCCccceeec
Confidence 899998888888887765321110 0 00 12345566777888888888764321 123347
Q ss_pred CHHHHHHHHHH
Q psy11213 597 SARNLLAILRL 607 (621)
Q Consensus 597 t~R~leslirl 607 (621)
++|.+..+++-
T Consensus 240 nlRDlsrv~qG 250 (272)
T PF12775_consen 240 NLRDLSRVFQG 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888877654
No 62
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.11 E-value=5.5e-10 Score=128.78 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=94.4
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.+|||.|++||||+.+|++++..+++. . ..++..+.. ..|.+... .+...-.+|.+-.|++|++||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~l 422 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFL 422 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEE
Confidence 34699999999999999999999887642 1 222322211 11332210 011122467788899999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.|+.+.|..|+.+++.+.+.- .|.....+.++.||+|+|.... ...+.-.+.+.|+.|+...-+.+++
T Consensus 423 dei~~l~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~l~~~~i~lPp 494 (638)
T PRK11388 423 EKVEYLSPELQSALLQVLKTGVITR--LDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYALHAFEITIPP 494 (638)
T ss_pred cChhhCCHHHHHHHHHHHhcCcEEe--CCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhhhceeEEeCCC
Confidence 9999999999999999999887753 3555566778999999997511 1122234667888888655444443
No 63
>KOG2004|consensus
Probab=99.11 E-value=4.3e-10 Score=123.92 Aligned_cols=171 Identities=20% Similarity=0.355 Sum_probs=101.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceE-EEeecCcccce-eeeccceeec------CCCeeEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTA-AVMKDPITNEM-VLEGGALVLA------DQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta-~~~~~~~~g~~-~l~~GalvlA------d~gi~~IDE 441 (621)
--++|+||||+|||.++|.||+.+.|-.+--.. .|++- +-++.. -..| --.||-++.+ .+-+++|||
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv----GG~tDvAeIkGH-RRTYVGAMPGkiIq~LK~v~t~NPliLiDE 513 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSV----GGMTDVAEIKGH-RRTYVGAMPGKIIQCLKKVKTENPLILIDE 513 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHhCCceEEEec----cccccHHhhccc-ceeeeccCChHHHHHHHhhCCCCceEEeeh
Confidence 368999999999999999999999998754211 11221 111111 0011 1235555444 667999999
Q ss_pred CCCCChhh----hhhhHhhhcc-eEEEEecC--CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 442 FDKLPDAD----RTAIHEVMEQ-QTISIAKA--GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 442 idk~~~~~----~~~L~eame~-q~isi~k~--gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
+||+.... -++|+|+|+- |.-+.--. .+-..| +++.+|||||-.. .+|+||+||..+ .
T Consensus 514 vDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-SkVLFicTAN~id-------------tIP~pLlDRMEv-I 578 (906)
T KOG2004|consen 514 VDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-SKVLFICTANVID-------------TIPPPLLDRMEV-I 578 (906)
T ss_pred hhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch-hheEEEEeccccc-------------cCChhhhhhhhe-e
Confidence 99987533 3699999962 22111000 001111 3478999999884 699999999953 3
Q ss_pred EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH-cC-CCCCCHHHHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK-GK-NPTVPSSLTEHIVKAYT 581 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar-~~-~p~ls~~a~~~l~~~y~ 581 (621)
-+..+ ..++-.+||+..|- .+....+- .. +..+++.|...|++.|.
T Consensus 579 elsGY-v~eEKv~IA~~yLi--------------------p~a~~~~gl~~e~v~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 579 ELSGY-VAEEKVKIAERYLI--------------------PQALKDCGLKPEQVKISDDALLALIERYC 626 (906)
T ss_pred eccCc-cHHHHHHHHHHhhh--------------------hHHHHHcCCCHHhcCccHHHHHHHHHHHH
Confidence 33344 34555667764431 11111111 01 56788888888888775
No 64
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.11 E-value=6.9e-10 Score=122.53 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=94.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.++++.|++||||+.++++++...++.. ..++..+.. ..|++. .+...+|......|.+..|+||+++||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ 240 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY-EKGAFTGAVKQTLGKIEYAHGGTLFLD 240 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC-CCCCcCCCccCCCCceeECCCCEEEEe
Confidence 45999999999999999999998866421 112221111 001110 011123333446788999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
|++.|+...|..|+.+++++.+.- .|.....+.++.+|+|+|..-. .....-.+.+.|+.|+...-+.
T Consensus 241 ~i~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~ 308 (445)
T TIGR02915 241 EIGDLPLNLQAKLLRFLQERVIER--LGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISIT 308 (445)
T ss_pred chhhCCHHHHHHHHHHHhhCeEEe--CCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhccceec
Confidence 999999999999999999987654 3445567788999999987511 1122234677888888543333
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.11 E-value=6.8e-10 Score=128.95 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=123.7
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.||||.|+|||||+.+|++++..+++.. +.+...+.. ..+++. .....+|...-..|.+-.|++|++||
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~le~a~~GtL~L 476 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH-ERGAFTGASAQRIGRFELADKSSLFL 476 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCc-ccccccccccchhhHHHhcCCCeEEE
Confidence 456999999999999999999998876421 122221110 011211 01111232233457778899999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.++.+.|..|+.+++++.+.- .|.....+.++.+|||+|..-. .....-.+...|+.|+...-+.+++
T Consensus 477 dei~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~~L~~~l~~~~i~lPp 548 (686)
T PRK15429 477 DEVGDMPLELQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATNRDLK------KMVADREFRSDLYYRLNVFPIHLPP 548 (686)
T ss_pred echhhCCHHHHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCCCCHH------HHHHcCcccHHHHhccCeeEEeCCC
Confidence 9999999999999999999887654 3545566778999999987511 1223335778899998655444433
Q ss_pred CCh-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 520 PDR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 520 ~d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
..+ .+|. .++++. ++++ +++. .+.+++++.+.|..+ .+
T Consensus 549 LreR~~Di~~L~~~~---------------------l~~~---~~~~~~~~~~~s~~al~~L~~y-------------~W 591 (686)
T PRK15429 549 LRERPEDIPLLVKAF---------------------TFKI---ARRMGRNIDSIPAETLRTLSNM-------------EW 591 (686)
T ss_pred hhhhHhHHHHHHHHH---------------------HHHH---HHHcCCCCCCcCHHHHHHHHhC-------------CC
Confidence 222 1221 223332 2222 2222 245788887777654 45
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy11213 595 YTSARNLLAILRLSTAL 611 (621)
Q Consensus 595 ~~t~R~leslirla~A~ 611 (621)
+-++|+|+++++-+-..
T Consensus 592 PGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 592 PGNVRELENVIERAVLL 608 (686)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 66788888877766543
No 66
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=4.6e-10 Score=125.97 Aligned_cols=195 Identities=15% Similarity=0.199 Sum_probs=118.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccE--E---ecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQ--Y---TTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~--~---~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+|||.|++||||+.+|++++..+++.. | .+...+.. ..|++.. ....+|...-..|.+-.|++|++|||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~-~~~~~~~~~~~~g~~e~a~~GtL~Ld 305 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHA-PGAYPNALEGKKGFFEQANGGSVLLD 305 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCC-CCCcCCcccCCCChhhhcCCCEEEEe
Confidence 45999999999999999999988765531 1 11211110 0112110 00011211234677778999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.|++..|..|+.+++++++.- .|.....+.++.||+|++..-. ...+.-.+.+.|+.|+....+..++.
T Consensus 306 eI~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~vRiI~st~~~l~------~l~~~g~f~~dL~~rL~~~~i~lPpL 377 (520)
T PRK10820 306 EIGEMSPRMQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQKNLV------ELVQKGEFREDLYYRLNVLTLNLPPL 377 (520)
T ss_pred ChhhCCHHHHHHHHHHHhcCCccc--CCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHhhcCeeEEeCCCc
Confidence 999999999999999999887533 3544555677889998875410 12233357788999986544444433
Q ss_pred Ch-HHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213 521 DR-DNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMSY 595 (621)
Q Consensus 521 d~-~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~ 595 (621)
.+ ..|. .++++.+ +++ +++. .|.+++++.+.|..+ .++
T Consensus 378 reR~~Di~~L~~~fl---------------------~~~---~~~~g~~~~~ls~~a~~~L~~y-------------~WP 420 (520)
T PRK10820 378 RDRPQDIMPLTELFV---------------------ARF---ADEQGVPRPKLAADLNTVLTRY-------------GWP 420 (520)
T ss_pred ccChhHHHHHHHHHH---------------------HHH---HHHcCCCCCCcCHHHHHHHhcC-------------CCC
Confidence 22 2232 2333332 222 2222 457888887777653 355
Q ss_pred cCHHHHHHHHHHHH
Q psy11213 596 TSARNLLAILRLST 609 (621)
Q Consensus 596 ~t~R~leslirla~ 609 (621)
-++|+|++++.-|-
T Consensus 421 GNvreL~nvl~~a~ 434 (520)
T PRK10820 421 GNVRQLKNAIYRAL 434 (520)
T ss_pred CHHHHHHHHHHHHH
Confidence 56777776665443
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.1e-10 Score=117.98 Aligned_cols=129 Identities=23% Similarity=0.312 Sum_probs=84.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCC-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKL- 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~- 445 (621)
.|||+||||||||.|||++|+.....+.- +.++-.....-|+- .+.-..+.+| ...|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIr---------vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIR---------VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEE---------eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence 79999999999999999999984432211 11110001001110 0111122233 2489999999974
Q ss_pred ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
..+.|..|+|.+.|- +|-.. ..++-||||+|... -|+||||+ ||| .
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~D-R 315 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFD-R 315 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCccc-c
Confidence 344677888888762 23221 34578999999873 59999998 999 7
Q ss_pred EEecCCCChHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~ 530 (621)
.+.++.||.+...+|.+
T Consensus 316 kIEfplPd~~gR~~Il~ 332 (406)
T COG1222 316 KIEFPLPDEEGRAEILK 332 (406)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 77778999998888776
No 68
>KOG0734|consensus
Probab=99.09 E-value=1e-10 Score=124.80 Aligned_cols=134 Identities=23% Similarity=0.331 Sum_probs=86.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCcc--ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSG--VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~--~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
.|||+||||||||.|+|++|..+.-..|. +|..... +|.-|.-++|-. +-|-.. -.+|+||||||....
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF-------~aAk~~-APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLF-------AAAKAR-APCIIFIDEIDAVGG 410 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHH-------HHHHhc-CCeEEEEechhhhcc
Confidence 69999999999999999999998776654 3432221 222222222210 000001 258999999997532
Q ss_pred ----hhh----hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEec
Q psy11213 448 ----ADR----TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQ 517 (621)
Q Consensus 448 ----~~~----~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~ 517 (621)
.++ ..|++.+-+ . +| ..-|....||||+|-.+ .|++||++ ||| ..+.+
T Consensus 411 kR~~~~~~y~kqTlNQLLvE----m--DG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD-~~v~V 468 (752)
T KOG0734|consen 411 KRNPSDQHYAKQTLNQLLVE----M--DG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFD-RHVTV 468 (752)
T ss_pred cCCccHHHHHHHHHHHHHHH----h--cC--cCcCCceEEEeccCChh-------------hhhHHhcCCCccc-eeEec
Confidence 222 223332211 1 12 22355688999999774 58999987 999 66778
Q ss_pred CCCChHHHHHHHHHHHh
Q psy11213 518 DKPDRDNDLKLAQHITY 534 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~ 534 (621)
+.||..-..+|.++.++
T Consensus 469 p~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLYLS 485 (752)
T ss_pred CCCCcccHHHHHHHHHh
Confidence 99999999998887765
No 69
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.08 E-value=9.1e-10 Score=115.83 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=76.4
Q ss_pred ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHh
Q psy11213 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAA 505 (621)
Q Consensus 426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~a 505 (621)
.|.|..|++||+.++|+.|.+.+.+..||.+++++.+.+. |....++.+..|||++|+.+ |+.. .+....+|
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e--~~~~----~~~k~~ea 300 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESE--WQRF----KSNKKNEA 300 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHH--Hhhh----hccccchh
Confidence 5999999999999999999999999999999999999884 44457778889999999973 1111 11234699
Q ss_pred HhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 506 LLSRFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 506 LlsRFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|++||. ++-+.-..+...+.+|.+..+.
T Consensus 301 f~dR~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 301 LLDRII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 999994 3333334455677778777764
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.08 E-value=9e-10 Score=128.52 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=111.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-----ccccceEEEeecCcccceee-eccce----eecCCCeeEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-----SGVGLTAAVMKDPITNEMVL-EGGAL----VLADQGICCID 440 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-----s~~gLta~~~~~~~~g~~~l-~~Gal----vlAd~gi~~ID 440 (621)
++||+||||||||.+++.+++.+......-.... +...+.++. .|..-. +.|.+ -....+|++||
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~-----~gyvg~~~~~~l~~~~~~~p~~VvllD 560 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP-----PGYVGFEQGGLLTEAVRKHPHCVLLLD 560 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC-----CCCcccchhhHHHHHHHhCCCeEEEEe
Confidence 6899999999999999999999755432211100 000111110 111001 11222 22356899999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC-----C-CCcc----c--ccCCCHhHhc
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP-----K-RSIE----Q--NIQLPAALLS 508 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~-----~-~~~~----~--~~~L~~aLls 508 (621)
|++|+.++.++.|+++|+++.++-. .|....+. ++.+|+|+|.....+.. . .... . .-.++++|++
T Consensus 561 Eieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~ 638 (731)
T TIGR02639 561 EIEKAHPDIYNILLQVMDYATLTDN-NGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN 638 (731)
T ss_pred chhhcCHHHHHHHHHhhccCeeecC-CCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence 9999999999999999999998754 45444433 58899999985221110 0 0000 0 1237899999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA 579 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~ 579 (621)
|||-++. ....+.+.-.+|+++.+.. +.+.+. .+.....+++++.++|++.
T Consensus 639 Rid~Vi~-F~pLs~e~l~~Iv~~~L~~------------------l~~~l~-~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 639 RLDAIIH-FNPLSEEVLEKIVQKFVDE------------------LSKQLN-EKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred cCCeEEE-cCCCCHHHHHHHHHHHHHH------------------HHHHHH-hCCCeEEeCHHHHHHHHHh
Confidence 9995555 5667777778888766531 122111 1112567888888888763
No 71
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=2e-09 Score=119.64 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=123.9
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.+.++|+.|++||||+.++++++..+++.. ..++..... ..|.+. .....+|......|.+..|+||.+||
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH-EKGAFTGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC-CCCCCCCCCcCCCCCeeECCCCEEEE
Confidence 456999999999999999999999876521 122211110 001110 01111333345678899999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.++...|..|+.+++++.+.- .|.....+.++.+|+|+|..-. ...+.-.+.+.|+.||..+.+..++
T Consensus 239 ~~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~~Pp 310 (469)
T PRK10923 239 DEIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNLE------QRVQEGKFREDLFHRLNVIRVHLPP 310 (469)
T ss_pred eccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCHH------HHHHcCCchHHHHHHhcceeecCCC
Confidence 9999999999999999999987764 2333445667899999986410 1222335788999999644443333
Q ss_pred C-ChHHHH-HHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 520 P-DRDNDL-KLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 520 ~-d~~~d~-~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
. +..+|. .+++|.+. ++ +++. .+.+++++.+.|..+ .+
T Consensus 311 LreR~~Di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~a~~~L~~~-------------~w 353 (469)
T PRK10923 311 LRERREDIPRLARHFLQ---------------------VA---ARELGVEAKLLHPETEAALTRL-------------AW 353 (469)
T ss_pred cccchhhHHHHHHHHHH---------------------HH---HHHcCCCCCCcCHHHHHHHHhC-------------CC
Confidence 2 222222 23334332 22 2221 235788877776654 45
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy11213 595 YTSARNLLAILRLSTAL 611 (621)
Q Consensus 595 ~~t~R~leslirla~A~ 611 (621)
+-++|+|+++++-+-..
T Consensus 354 pgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 354 PGNVRQLENTCRWLTVM 370 (469)
T ss_pred CChHHHHHHHHHHHHHh
Confidence 56677777777665443
No 72
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.07 E-value=5.6e-10 Score=123.29 Aligned_cols=130 Identities=24% Similarity=0.241 Sum_probs=83.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCC---ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS---SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~---s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
.|||+||||||||.+++++|+.+....+....+. ..+|-+.... ......+.. ...+|++|||+|++..
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l-----~~~f~~A~~---~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM-----RQMIRIAEA---LSPCILWIDEIDKAFS 332 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH-----HHHHHHHHh---cCCcEEEehhhhhhhc
Confidence 6999999999999999999999766554432211 0111110000 000000111 1368999999998643
Q ss_pred h------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 448 A------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 448 ~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
. ....++..|++. +.+..||||+|... .|++++++ |||.+
T Consensus 333 ~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~vIaTTN~~~-------------~Ld~allR~GRFD~~ 386 (489)
T CHL00195 333 NSESKGDSGTTNRVLATFITWLSEK-------------KSPVFVVATANNID-------------LLPLEILRKGRFDEI 386 (489)
T ss_pred cccCCCCchHHHHHHHHHHHHHhcC-------------CCceEEEEecCChh-------------hCCHHHhCCCcCCeE
Confidence 2 123455555431 34578999999773 69999997 99965
Q ss_pred EEecCCCChHHHHHHHHHHHhh
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~ 535 (621)
+ .++.|+.+...+|.+..+..
T Consensus 387 i-~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 387 F-FLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred E-EeCCcCHHHHHHHHHHHHhh
Confidence 4 56889999999998877653
No 73
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.04 E-value=1.6e-09 Score=119.99 Aligned_cols=138 Identities=17% Similarity=0.281 Sum_probs=93.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc---EE--ecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS---QY--TTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~--~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.++|+.|++||||+.++++++..+++. .+ .+...+.. ..|++.. ....+|......|.+..|++|+++||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE-KGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC-CCCCCCCCCCCCCceEECCCCEEEEe
Confidence 3599999999999999999998876542 11 12211110 0111110 11123444456788999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
|++.++...|..|+.+++.+.+.- .|.....+.++.||+|+|.... .....-.+.+.|+.|+..+.+
T Consensus 245 ~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~l~------~~~~~g~~~~~l~~~l~~~~i 311 (457)
T PRK11361 245 EIGEMPLVLQAKLLRILQEREFER--IGGHQTIKVDIRIIAATNRDLQ------AMVKEGTFREDLFYRLNVIHL 311 (457)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcccee
Confidence 999999999999999999887653 4555667788999999997511 112223467788888854333
No 74
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.04 E-value=2.1e-09 Score=122.51 Aligned_cols=209 Identities=16% Similarity=0.146 Sum_probs=125.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc-----------EEecCCCCc----c--ccceEEEeecC----------ccccee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS-----------QYTTGRGSS----G--VGLTAAVMKDP----------ITNEMV 423 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----------~~~~g~~~s----~--~gLta~~~~~~----------~~g~~~ 423 (621)
|++|+||||||||++++.+++...+. +...+.... . ..+.+.. .++ .+|...
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-HDPIYQGARRDLAETGVPE 255 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999998765311 111121110 0 0111111 000 012223
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe---------------EEecCCcceEEeecCCCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI---------------MTRLNARVSILAAANPAYG 488 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi---------------~~~l~ar~~viAa~Np~~g 488 (621)
...|.+..+++|++||||++.|++..+..|+.+|+++++.+..... ....++++.+++|++...
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~- 334 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP- 334 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc-
Confidence 4567777889999999999999999999999999998876642210 112345567776664431
Q ss_pred CCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11213 489 RYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTV 568 (621)
Q Consensus 489 ~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~l 568 (621)
..++++|.|||..+ .....+.++-..|+++.+... ...++.+.++....|++. .
T Consensus 335 -----------~~l~~aLrSR~~~i--~~~pls~edi~~Il~~~a~~~---------~v~ls~eal~~L~~ys~~---g- 388 (615)
T TIGR02903 335 -----------EEINPALRSRCAEV--FFEPLTPEDIALIVLNAAEKI---------NVHLAAGVEELIARYTIE---G- 388 (615)
T ss_pred -----------cccCHHHHhceeEE--EeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHCCCc---H-
Confidence 14789999999643 345567777778888766421 123566655555555431 1
Q ss_pred CHHHHHHHHHHHHHHHHHhh---cCCCCCccCHHHHHHHHHHH
Q psy11213 569 PSSLTEHIVKAYTELRKVAR---NSRDMSYTSARNLLAILRLS 608 (621)
Q Consensus 569 s~~a~~~l~~~y~~lR~~~~---~~~~~~~~t~R~leslirla 608 (621)
..+.+.|...|...+.... .......++...++..++.+
T Consensus 389 -Rraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 389 -RKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 3555666666544322211 11123457777777766554
No 75
>KOG0738|consensus
Probab=99.01 E-value=4.9e-10 Score=115.99 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=96.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~ 447 (621)
.|||+||||||||+|||++|....-.+|. .|+.-|+.. .+.. +-..+ -=.+-+| -..++||||||.+-.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFN----VSsstltSK-wRGe-SEKlv--RlLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFN----VSSSTLTSK-WRGE-SEKLV--RLLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEE----echhhhhhh-hccc-hHHHH--HHHHHHHHHhCCceeehhhHHHHHh
Confidence 79999999999999999999985433332 111112211 1110 00000 0000111 257999999998522
Q ss_pred ------------hhhhhhHhhhcceEEEEecCCeEEecC--CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 448 ------------ADRTAIHEVMEQQTISIAKAGIMTRLN--ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 448 ------------~~~~~L~eame~q~isi~k~gi~~~l~--ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
...+.|+--|+ |...++. ..+.|+||+|-.+ +|++||++||. -
T Consensus 319 ~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~VmVLAATN~PW-------------diDEAlrRRlE-K 375 (491)
T KOG0738|consen 319 QRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVVMVLAATNFPW-------------DIDEALRRRLE-K 375 (491)
T ss_pred cCCCccchhHHHHHHHHHHHHhh---------ccccccccceeEEEEeccCCCc-------------chHHHHHHHHh-h
Confidence 12234444453 3333332 3488999999885 79999999995 7
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCC-----CCCCCCCHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPP-----TELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~-----~~~~~i~~~~lr~~i~~a 561 (621)
.+.+..||.+....+.+..+.......... ...+.++-++++..++.|
T Consensus 376 RIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 376 RIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred heeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 788899999999999987765432211100 123445666666666554
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.00 E-value=3.8e-09 Score=124.45 Aligned_cols=207 Identities=22% Similarity=0.200 Sum_probs=126.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC-----CccccceEEEeecCcccce-eeeccceeec----CCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG-----SSGVGLTAAVMKDPITNEM-VLEGGALVLA----DQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~-----~s~~gLta~~~~~~~~g~~-~l~~GalvlA----d~gi~ 437 (621)
.+||+||||+|||.+++++++.+-. .....+.. .+...|.++ ..|.. .-+.|.|..+ ..+|+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~-----~~gyvg~~~~g~L~~~v~~~p~svv 672 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS-----PPGYVGYGEGGVLTEAVRRKPYSVV 672 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC-----CCCcccccccchHHHHHHhCCCcEE
Confidence 5899999999999999999998621 11111100 000011111 01111 0133443322 56899
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC-----C-----CCcccc------cC
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP-----K-----RSIEQN------IQ 501 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~-----~-----~~~~~~------~~ 501 (621)
+||||+|+.++.++.|+++|+++.++.. .|....+. ++.+|.|+|-..+.|.. . ...... -.
T Consensus 673 llDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (852)
T TIGR03345 673 LLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKV 750 (852)
T ss_pred EEechhhcCHHHHHHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999865 56666655 58999999975433211 1 000111 13
Q ss_pred CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHH
Q psy11213 502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG--KNPTVPSSLTEHIVKA 579 (621)
Q Consensus 502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~--~~p~ls~~a~~~l~~~ 579 (621)
++++|++|+| + +.+...+.+.-.+|+...+... .++ ++++ ....+++++.++|.+.
T Consensus 751 f~PEflnRi~-i-I~F~pLs~e~l~~Iv~~~L~~l-----------------~~r---l~~~~gi~l~i~d~a~~~La~~ 808 (852)
T TIGR03345 751 FKPAFLGRMT-V-IPYLPLDDDVLAAIVRLKLDRI-----------------ARR---LKENHGAELVYSEALVEHIVAR 808 (852)
T ss_pred ccHHHhccee-E-EEeCCCCHHHHHHHHHHHHHHH-----------------HHH---HHHhcCceEEECHHHHHHHHHH
Confidence 8999999998 3 4556778888788887654311 111 2222 2467899999988875
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHH--HHHHHHHhcCC
Q psy11213 580 YTELRKVARNSRDMSYTSARNLLAILR--LSTALARLRLC 617 (621)
Q Consensus 580 y~~lR~~~~~~~~~~~~t~R~leslir--la~A~Akl~lr 617 (621)
.. ......|.+..+|+ +..+.|.+-+.
T Consensus 809 g~-----------~~~~GAR~L~r~Ie~~i~~~la~~~l~ 837 (852)
T TIGR03345 809 CT-----------EVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred cC-----------CCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 21 12235677777764 34445544443
No 77
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.99 E-value=4.3e-09 Score=116.74 Aligned_cols=197 Identities=18% Similarity=0.220 Sum_probs=121.4
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
.++++++.|++||||+.++++++...++.. ..++..... ..|.+. .+...+|...-..|.+..|++|++||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l 234 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH-EKGAFTGANTRRQGRFEQADGGTLFL 234 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC-CCCCCCCcccCCCCcEEECCCCeEEE
Confidence 356999999999999999999998876531 122221111 001111 11111233333567888999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
||++.++.+.|..|+++++.+.+.. .|.....+.++.||+|+|.... .....-.+.+.|+.|+..+-+..++
T Consensus 235 ~ei~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPp 306 (463)
T TIGR01818 235 DEIGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQNLE------ALVRQGKFREDLFHRLNVIRIHLPP 306 (463)
T ss_pred EchhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCCHH------HHHHcCCcHHHHHHHhCcceecCCC
Confidence 9999999999999999999988765 3444455667889999987510 1122234677899998654444433
Q ss_pred CC-h-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 520 PD-R-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK---NPTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 520 ~d-~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~---~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
.. . +.-..+++|.+. ++ +++. .+.+++++.+.|..+ .+
T Consensus 307 Lr~R~~Di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~a~~~L~~~-------------~w 349 (463)
T TIGR01818 307 LRERREDIPRLARHFLA---------------------LA---ARELDVEPKLLDPEALERLKQL-------------RW 349 (463)
T ss_pred cccchhhHHHHHHHHHH---------------------HH---HHHhCCCCCCcCHHHHHHHHhC-------------CC
Confidence 32 2 222334444432 21 1211 246777777777654 34
Q ss_pred ccCHHHHHHHHHHHHH
Q psy11213 595 YTSARNLLAILRLSTA 610 (621)
Q Consensus 595 ~~t~R~leslirla~A 610 (621)
+-++|+|.++++-+-.
T Consensus 350 pgNvreL~~~~~~~~~ 365 (463)
T TIGR01818 350 PGNVRQLENLCRWLTV 365 (463)
T ss_pred CChHHHHHHHHHHHHH
Confidence 5566777766665544
No 78
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.99 E-value=2.1e-09 Score=116.45 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=81.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP- 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~- 446 (621)
+|||+||||||||++++++++.+....+..... .+..... . .+...+ ...+-.| ..+|+||||+|.+.
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~----~l~~~~~-g--~~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS----ELVQKFI-G--EGARLV-RELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEeehH----HHhHhhc-c--chHHHH-HHHHHHHHhcCCeEEEEechhhhhc
Confidence 799999999999999999999876544321100 0110000 0 001100 0111111 35799999999873
Q ss_pred ----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 447 ----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 447 ----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
...+..+.+.+.+-. |.. -..++.||||+|... .+++++++ |||. .
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~-~ 296 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATNRID-------------ILDPAILRPGRFDR-I 296 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecCChh-------------hCCHHHcCCccCce-E
Confidence 223344555443211 110 123578999999763 58899996 9995 4
Q ss_pred EecCCCChHHHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il 533 (621)
+.++.|+.+...+|.+..+
T Consensus 297 I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 297 IEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 6778899999998887654
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.98 E-value=1.7e-09 Score=126.19 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=113.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeecc-ce---eecCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-AL---VLADQG 435 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-al---vlAd~g 435 (621)
-|++|+||||||||.+++.+++.+-. .++....+ .+.+... ..|+|.-.-. .+ ....+.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----~l~a~~~---~~g~~e~~l~~i~~~~~~~~~~ 276 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----SLLAGTK---YRGDFEERLKAVVSEIEKEPNA 276 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----HHhhhcc---ccchHHHHHHHHHHHHhccCCe
Confidence 39999999999999999999987521 11211100 0111100 1122211000 01 012357
Q ss_pred eeEecCCCCCCh---------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 436 ICCIDEFDKLPD---------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 436 i~~IDEidk~~~---------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
|+||||++.+.. +..+.|..+|+.+. ..+|||+|+.+ +...+..+++|
T Consensus 277 ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e--------~~~~~~~d~al 333 (731)
T TIGR02639 277 ILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK---------------LRCIGSTTYEE--------YKNHFEKDRAL 333 (731)
T ss_pred EEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC---------------eEEEEecCHHH--------HHHHhhhhHHH
Confidence 999999998742 23455666666543 46799999852 33335789999
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYT 581 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~ 581 (621)
.+||. .+.+..|+.++..+|.+.+...+... ..-.++.+.+...+..+.++ .-.+++.|.+.+-+...
T Consensus 334 ~rRf~--~i~v~~p~~~~~~~il~~~~~~~e~~-----~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 334 SRRFQ--KIDVGEPSIEETVKILKGLKEKYEEF-----HHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHhCc--eEEeCCCCHHHHHHHHHHHHHHHHhc-----cCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 99996 46778889999999999876543211 12368899999999999887 55689999998876554
No 80
>PRK15115 response regulator GlrR; Provisional
Probab=98.97 E-value=2.4e-09 Score=118.16 Aligned_cols=139 Identities=17% Similarity=0.268 Sum_probs=94.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.++++.|++||||+.+++++++..++.. ..++..+.. ..|++. .+...+|......|.+-.|++|++|||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGH-ARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCC-CcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 45999999999999999999999876521 122211110 011111 111224444556788999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
|++.++.+.|..|+.+++++.+.- .|.....+.++.+|+|+|..- ......-.+.+.|+.|+...-+.
T Consensus 236 ~i~~l~~~~q~~L~~~l~~~~~~~--~g~~~~~~~~~rii~~~~~~l------~~~~~~~~f~~~l~~~l~~~~i~ 303 (444)
T PRK15115 236 EIGDMPAPLQVKLLRVLQERKVRP--LGSNRDIDIDVRIISATHRDL------PKAMARGEFREDLYYRLNVVSLK 303 (444)
T ss_pred ccccCCHHHHHHHHHHHhhCCEEe--CCCCceeeeeEEEEEeCCCCH------HHHHHcCCccHHHHHhhceeeec
Confidence 999999999999999999987743 455556677899999998531 01122235677788887544333
No 81
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.95 E-value=3.8e-09 Score=114.04 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=83.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE------Ee-cCCCCccccceEEEeecCcccceeeeccce----eec-----CC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ------YT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL----VLA-----DQ 434 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~------~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal----vlA-----d~ 434 (621)
|++|+|+||||||++++.++..+.... .+ -....+...+.... .+....+...+|.+ ..| .+
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~--rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY--RPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc--CCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 999999999999999999998753210 11 11111111111111 11123355566643 112 35
Q ss_pred CeeEecCCCCCChh-hhhhhHhhhcce------EEEE--ec-CCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH
Q psy11213 435 GICCIDEFDKLPDA-DRTAIHEVMEQQ------TISI--AK-AGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA 504 (621)
Q Consensus 435 gi~~IDEidk~~~~-~~~~L~eame~q------~isi--~k-~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~ 504 (621)
.+++|||+|+.+.+ .-..+..+||.+ .+.+ +. .+....+|.++.||||+|.... ++ ..++.
T Consensus 274 ~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr------s~---~~lD~ 344 (459)
T PRK11331 274 YVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADR------SL---AVVDY 344 (459)
T ss_pred cEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcccc------ch---hhccH
Confidence 79999999999855 356778888853 1222 12 2345678999999999998731 11 24899
Q ss_pred hHhccccEEEEe
Q psy11213 505 ALLSRFDLLWLI 516 (621)
Q Consensus 505 aLlsRFDli~~~ 516 (621)
||++||..+-+.
T Consensus 345 AlrRRF~fi~i~ 356 (459)
T PRK11331 345 ALRRRFSFIDIE 356 (459)
T ss_pred HHHhhhheEEec
Confidence 999999544444
No 82
>KOG2028|consensus
Probab=98.95 E-value=1.5e-09 Score=111.45 Aligned_cols=138 Identities=22% Similarity=0.372 Sum_probs=87.9
Q ss_pred eeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccccEE--e--cCCCCccccceEEEeecC---ccccee
Q psy11213 351 SGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQY--T--TGRGSSGVGLTAAVMKDP---ITNEMV 423 (621)
Q Consensus 351 ~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~--~--~g~~~s~~gLta~~~~~~---~~g~~~ 423 (621)
.|++..++..+ .--.++|+||||||||+|++.+++.+...-| + +...+... -.++. ...+..
T Consensus 150 ~gllrs~ieq~------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~-----dvR~ife~aq~~~~ 218 (554)
T KOG2028|consen 150 DGLLRSLIEQN------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTN-----DVRDIFEQAQNEKS 218 (554)
T ss_pred chHHHHHHHcC------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchH-----HHHHHHHHHHHHHh
Confidence 46666555443 1226899999999999999999988654321 1 11111100 00110 001111
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQ 501 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~ 501 (621)
....+-|+||||+++.+...|..++...|.+.|.+ |+|+ ||. +.
T Consensus 219 ------l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~l---------------IGATTENPS-------------Fq 264 (554)
T KOG2028|consen 219 ------LTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITL---------------IGATTENPS-------------FQ 264 (554)
T ss_pred ------hhcceeEEEeHHhhhhhhhhhhcccceeccCceEE---------------EecccCCCc-------------cc
Confidence 11235699999999999999999999999988765 3333 777 47
Q ss_pred CCHhHhccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213 502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~ 535 (621)
|..||+||+ .+|++ .....+.-..|..+-+..
T Consensus 265 ln~aLlSRC-~VfvL-ekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 265 LNAALLSRC-RVFVL-EKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hhHHHHhcc-ceeEe-ccCCHHHHHHHHHHHHHh
Confidence 999999999 45554 555566666666665543
No 83
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.94 E-value=1e-08 Score=121.55 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=118.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCC-Cc---cccceEEEeecCcccceee-ecccee----ecCCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRG-SS---GVGLTAAVMKDPITNEMVL-EGGALV----LADQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~-~s---~~gLta~~~~~~~~g~~~l-~~Galv----lAd~gi~ 437 (621)
.+||+||||||||.+++++++.+... . +..... .. ...|.++. .|..-. +.|.+. .....|+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~-----~g~~g~~~~g~l~~~v~~~p~~vl 671 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP-----PGYVGYEEGGQLTEAVRRKPYSVV 671 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC-----CCccCcccccHHHHHHHcCCCcEE
Confidence 69999999999999999999975321 1 111000 00 00011110 111111 123322 1234699
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC---C---CCcc------cccCCCHh
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP---K---RSIE------QNIQLPAA 505 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~---~---~~~~------~~~~L~~a 505 (621)
++|||++++++.++.|+++|+++.++.. .|....+. ++.||+|+|-....+.. . .... -.-.+.+.
T Consensus 672 llDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe 749 (852)
T TIGR03346 672 LFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE 749 (852)
T ss_pred EEeccccCCHHHHHHHHHHHhcCceecC-CCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence 9999999999999999999999998864 45555543 48899999974321111 0 0011 11248899
Q ss_pred HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy11213 506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~ 585 (621)
|+.|+|-+++. .+++.+.-..|+...+. .+.+.+. .+.....+++++.++|.+.-.
T Consensus 750 l~~Rid~IivF-~PL~~e~l~~I~~l~L~------------------~l~~~l~-~~~~~l~i~~~a~~~L~~~~~---- 805 (852)
T TIGR03346 750 FLNRIDEIVVF-HPLGREQIARIVEIQLG------------------RLRKRLA-ERKITLELSDAALDFLAEAGY---- 805 (852)
T ss_pred HhcCcCeEEec-CCcCHHHHHHHHHHHHH------------------HHHHHHH-HCCCeecCCHHHHHHHHHhCC----
Confidence 99999955544 56677777777776543 2232221 112257889999998876410
Q ss_pred HhhcCCCCCccCHHHHHHHHH
Q psy11213 586 VARNSRDMSYTSARNLLAILR 606 (621)
Q Consensus 586 ~~~~~~~~~~~t~R~leslir 606 (621)
......|.|..+++
T Consensus 806 -------~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 806 -------DPVYGARPLKRAIQ 819 (852)
T ss_pred -------CCCCCchhHHHHHH
Confidence 12245676666654
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.93 E-value=1.3e-08 Score=120.17 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=110.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC--C---ccccceEEEeecCcccceee-eccce----eecCCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG--S---SGVGLTAAVMKDPITNEMVL-EGGAL----VLADQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~--~---s~~gLta~~~~~~~~g~~~l-~~Gal----vlAd~gi~ 437 (621)
.+||+||||+|||.|++.+|+.+-. .....+.. . +...|.++ ..|.... +.|.| -....+|+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~-----~~gyvg~~~~~~l~~~~~~~p~~Vv 615 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS-----PPGYVGYNEGGQLTEAVRKKPYTVV 615 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC-----CCcccCcCccchHHHHHHhCCCeEE
Confidence 5899999999999999999997521 11111100 0 00001111 0111001 12222 22234799
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC---------CCCCCC------Cc---cc-
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG---------RYNPKR------SI---EQ- 498 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g---------~~~~~~------~~---~~- 498 (621)
++||++|+.++.++.|+++||++.++.. .|....+ .++.+|.|+|.... .|.... .+ ..
T Consensus 616 llDeieka~~~v~~~Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~ 693 (821)
T CHL00095 616 LFDEIEKAHPDIFNLLLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNL 693 (821)
T ss_pred EECChhhCCHHHHHHHHHHhccCceecC-CCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHH
Confidence 9999999999999999999999999876 3665555 36999999997522 122111 00 00
Q ss_pred -----ccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHH
Q psy11213 499 -----NIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSL 572 (621)
Q Consensus 499 -----~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a 572 (621)
.-.++|.|++|+|-+++. .+.+.+.-.+|++..++. +.+-+ ..+ ....+++++
T Consensus 694 ~~~~~~~~f~peflnRid~ii~F-~pL~~~~l~~Iv~~~l~~------------------l~~rl--~~~~i~l~~~~~~ 752 (821)
T CHL00095 694 VNEELKQFFRPEFLNRLDEIIVF-RQLTKNDVWEIAEIMLKN------------------LFKRL--NEQGIQLEVTERI 752 (821)
T ss_pred HHHHHHHhcCHHHhccCCeEEEe-CCCCHHHHHHHHHHHHHH------------------HHHHH--HHCCcEEEECHHH
Confidence 013789999999955554 556667777777766531 11111 222 267789999
Q ss_pred HHHHHHH
Q psy11213 573 TEHIVKA 579 (621)
Q Consensus 573 ~~~l~~~ 579 (621)
.++|.+.
T Consensus 753 ~~~La~~ 759 (821)
T CHL00095 753 KTLLIEE 759 (821)
T ss_pred HHHHHHh
Confidence 8888764
No 85
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.91 E-value=5.4e-09 Score=113.04 Aligned_cols=134 Identities=24% Similarity=0.298 Sum_probs=79.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee---cCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL---ADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl---Ad~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+.... +. +.... .. .+...+. -.+-. ...+|+||||+|.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~~-s~---l~~k~-~g--e~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG-SE---FVQKY-LG--EGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh-HH---HHHHh-cc--hhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence 79999999999999999999986554432110 00 00000 00 0000000 00001 1357999999998632
Q ss_pred -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
..+..+.+.+.+- .|.. -..++.||+|+|... .|++++++ |||-.
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~l------d~~~--~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~- 310 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQM------DGFD--QTTNVKVIMATNRAD-------------TLDPALLRPGRLDRK- 310 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHh------hccC--CCCCEEEEEecCCch-------------hCCHHHcCCCcccEE-
Confidence 1223344444321 1110 123567899999763 68999997 99955
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+.++.|+.+....|.+..+.
T Consensus 311 I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 311 IEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred EEeCCcCHHHHHHHHHHHHh
Confidence 56689999988888886654
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=5.9e-09 Score=113.72 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=72.8
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEE----ecCCCCcc----ccceEEE-eecCc--ccc---eeeeccceee---cCC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGSSG----VGLTAAV-MKDPI--TNE---MVLEGGALVL---ADQ 434 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~s~----~gLta~~-~~~~~--~g~---~~l~~Galvl---Ad~ 434 (621)
+||+||||||||++++.+++.+..... .+|.-.+- .|....+ ..++. .|. ..+...+... ...
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~ 122 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCC
Confidence 799999999999999999998654211 11100000 0000000 01110 000 0010111111 123
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
-|++|||+++|+.+.+++|+..||+- +..+.+| ||.++. .|+++++||+- .
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~viFILaTte~~--------------kI~~TI~SRCq-~ 174 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIVFILATTEFH--------------KIPETILSRCQ-D 174 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcC-------------CCceEEEeecCChh--------------hccHHHHhhhh-e
Confidence 49999999999999999999999862 2234444 444443 69999999983 4
Q ss_pred EEecCCCChHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il 533 (621)
|.+. ..+.+.-....++++
T Consensus 175 ~~f~-~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 175 FIFK-KVPLSVLQDYSEKLC 193 (484)
T ss_pred eeec-CCCHHHHHHHHHHHH
Confidence 4433 333333334444443
No 87
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.91 E-value=7.2e-09 Score=121.10 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=111.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC--CCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG--RGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g--~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~ 445 (621)
-++||.|.||+|||.|+.++|+.......-.. ..+.-..|.|+-.--...|++.+...++..| +||.+++||++.+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 48999999999999999999998544321111 1122234555544333568887776666555 8999999999999
Q ss_pred ChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 446 PDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 446 ~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
+.++...|...++. +..-|..-.++...+.++.|.||-||... -.+.-.||.+++.|| .++..|-...+.
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q-------ggGRKgLPkSF~nRF--svV~~d~lt~dD 1694 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ-------GGGRKGLPKSFLNRF--SVVKMDGLTTDD 1694 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc-------CCCcccCCHHHhhhh--heEEecccccch
Confidence 99999999999986 44566666677888899999999999731 112247999999999 445556666666
Q ss_pred HHHHHHHH
Q psy11213 525 DLKLAQHI 532 (621)
Q Consensus 525 d~~ia~~i 532 (621)
-..||.+.
T Consensus 1695 i~~Ia~~~ 1702 (4600)
T COG5271 1695 ITHIANKM 1702 (4600)
T ss_pred HHHHHHhh
Confidence 66667665
No 88
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.91 E-value=1.1e-08 Score=112.83 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=91.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.++++.|++||||+.++++++...++.. ..++..... ..|++. .....+|.-.-..|.+..|++|++|||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC-CCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 35899999999999999999998766431 222221111 001111 011112222345788999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
|++.|++..|..|+.+++.+.+.- .|.....+.++.+|+|++.... .....-.+...|+.|+...
T Consensus 241 ei~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 241 EIGDISPMMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred ccccCCHHHHHHHHHHHccCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhccc
Confidence 999999999999999999988654 4555566777889999876411 1112234677888887533
No 89
>KOG0745|consensus
Probab=98.91 E-value=4.2e-10 Score=117.79 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=92.8
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCC-ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS-SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~-s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
...||||+||.|+|||.|++.+|+.+.-.+..++-.+ +.+|..+--+..-...-..-..+.+-.|..||+||||+||+.
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 5679999999999999999999999876665554332 333333311100000111112345667789999999999975
Q ss_pred --------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCCCCCcccccCCCHhHhcc
Q psy11213 447 --------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 447 --------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
+..|.+|+..+|--.+.+.+.|.....+-....|-|+|-. .|.| .+|...+-+|
T Consensus 305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF---------~~Ldk~I~rR 375 (564)
T KOG0745|consen 305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAF---------VGLDKIISRR 375 (564)
T ss_pred ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccc---------cchHHHHHHh
Confidence 4468899999999888997777767777778888888875 4555 2555555555
Q ss_pred cc
Q psy11213 510 FD 511 (621)
Q Consensus 510 FD 511 (621)
.|
T Consensus 376 ~~ 377 (564)
T KOG0745|consen 376 LD 377 (564)
T ss_pred hc
Confidence 54
No 90
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.91 E-value=5.4e-10 Score=101.33 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=72.1
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
|||+||||||||++++.+++.+...++........ .+-+.... ..+.-++.. .+..+|++|||+|.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i-----~~~~~~~~~--~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI-----RDFFKKAKK--SAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH-----HHHHHHHHH--TSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc-----ccccccccc--cccceeeeeccchhcccc
Confidence 69999999999999999999976544322111100 00000000 000000000 002589999999999887
Q ss_pred h-----------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh-ccccEEEEe
Q psy11213 449 D-----------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL-SRFDLLWLI 516 (621)
Q Consensus 449 ~-----------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl-sRFDli~~~ 516 (621)
. ...|+..|+... ..+.++.+|+|+|... .++++++ +|||-.+.+
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred cccccccccccccceeeecccccc----------cccccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence 6 567777776421 0145689999999863 6999999 999866543
No 91
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.91 E-value=6.6e-09 Score=116.21 Aligned_cols=131 Identities=26% Similarity=0.307 Sum_probs=80.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC-CC--CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RG--SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~--~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+... .. ....|.+....++ - ++. + .....+|+||||+|.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~----~--f~~-a-~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRD----L--FEQ-A-KKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHH----H--HHH-H-HhcCCCEEEEechhhhhh
Confidence 7999999999999999999998655443211 10 0001111000000 0 000 0 011348999999998753
Q ss_pred hhh--------------hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 448 ADR--------------TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 448 ~~~--------------~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
... +.++..|+. . .-+..+.||||+|... .|+++|++ |||
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRfd 217 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPD-------------VLDPALLRPGRFD 217 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChh-------------hcCHHHhcCCcce
Confidence 221 223333321 0 0123478999999873 68999997 999
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~ 534 (621)
..+.++.|+.+...+|.+..+.
T Consensus 218 -~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 218 -RQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred -EEEEcCCCCHHHHHHHHHHHHh
Confidence 5577789999999998887654
No 92
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.90 E-value=1.2e-08 Score=111.65 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=88.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeec-cceeecCCCeeEecCCCCCChhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG-GALVLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~-GalvlAd~gi~~IDEidk~~~~~ 449 (621)
|++|+||||||||++++.+++.+....+.......+. . .. .++.-.. .......+++++|||+++++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~--~--~i-----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~ 108 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGV--K--DL-----REVIEEARQRRSAGRRTILFIDEIHRFNKAQ 108 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccH--H--HH-----HHHHHHHHHhhhcCCceEEEEechhhhCHHH
Confidence 8999999999999999999987654433211111100 0 00 0000000 00112246799999999999999
Q ss_pred hhhhHhhhcceEEEEecCCeEEecCCcceEEee--cCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHH
Q psy11213 450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAA--ANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK 527 (621)
Q Consensus 450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa--~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ 527 (621)
+..|+..||.+++ .+|++ .||. ..+.++|+||| ..+....++.+.-..
T Consensus 109 q~~LL~~le~~~i---------------ilI~att~n~~-------------~~l~~aL~SR~--~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 109 QDALLPHVEDGTI---------------TLIGATTENPS-------------FEVNPALLSRA--QVFELKPLSEEDIEQ 158 (413)
T ss_pred HHHHHHHhhcCcE---------------EEEEeCCCChh-------------hhccHHHhccc--eeeEeCCCCHHHHHH
Confidence 9999999987653 33443 3554 35889999999 334455666666666
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 528 LAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 528 ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
+.++.+..... ....++.+.+...+.++
T Consensus 159 lL~~~l~~~~~------~~i~i~~~al~~l~~~s 186 (413)
T PRK13342 159 LLKRALEDKER------GLVELDDEALDALARLA 186 (413)
T ss_pred HHHHHHHHhhc------CCCCCCHHHHHHHHHhC
Confidence 67666543210 00245566555555543
No 93
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.89 E-value=1.1e-08 Score=120.58 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=114.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE---ecCCCC--cccc-ceEEEeecCcccceeeecc-ce---ee-cCCCeeEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY---TTGRGS--SGVG-LTAAVMKDPITNEMVLEGG-AL---VL-ADQGICCI 439 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~---~~g~~~--s~~g-Lta~~~~~~~~g~~~l~~G-al---vl-Ad~gi~~I 439 (621)
|++|+||||||||++++.+++.+..... ..+... -..| +.+. ....|+|.-+-. .+ .. ..+.|+||
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag---~~~~ge~e~~lk~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG---ASVKGEFENRLKSVIDEVKASPQPIILFI 286 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc---cccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999987643210 000000 0000 1110 011233311000 00 00 13569999
Q ss_pred cCCCCCCh-----hhh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 440 DEFDKLPD-----ADR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 440 DEidk~~~-----~~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
||++.+.. ..+ +.|..+|+.+. ..+|||+++.+ +..-+.++++|.+||.
T Consensus 287 DEih~l~~~g~~~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e--------~~~~~~~d~AL~rRf~ 343 (852)
T TIGR03345 287 DEAHTLIGAGGQAGQGDAANLLKPALARGE---------------LRTIAATTWAE--------YKKYFEKDPALTRRFQ 343 (852)
T ss_pred eChHHhccCCCccccccHHHHhhHHhhCCC---------------eEEEEecCHHH--------HhhhhhccHHHHHhCe
Confidence 99999853 112 24666666543 46788998752 2233678999999994
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR 584 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR 584 (621)
.+.+..|+.+.-..|.+.+....... ..-.++.+.++..+..+.++ ...+++.|.+.|-+.-...|
T Consensus 344 --~i~v~eps~~~~~~iL~~~~~~~e~~-----~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 344 --VVKVEEPDEETAIRMLRGLAPVLEKH-----HGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred --EEEeCCCCHHHHHHHHHHHHHhhhhc-----CCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 56778999999999977665432211 12458899999999999887 77899999999888654444
No 94
>CHL00176 ftsH cell division protein; Validated
Probab=98.87 E-value=8.5e-09 Score=117.47 Aligned_cols=134 Identities=28% Similarity=0.369 Sum_probs=79.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
++||+||||||||.+++++|..+....+.. +... ...|..+...++ -+. .+ .....+|+||||+|.+..
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~----lF~-~A---~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD----LFK-KA---KENSPCIVFIDEIDAVGR 289 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH----HHH-HH---hcCCCcEEEEecchhhhh
Confidence 799999999999999999999865443321 1110 001111000000 000 00 011246999999998732
Q ss_pred -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
..+..|...+.+- .|. .-+.++.||||+|... .++++|++ |||. .
T Consensus 290 ~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIaaTN~~~-------------~LD~ALlRpGRFd~-~ 347 (638)
T CHL00176 290 QRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIAATNRVD-------------ILDAALLRPGRFDR-Q 347 (638)
T ss_pred cccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEEecCchH-------------hhhhhhhccccCce-E
Confidence 1222333333210 011 1134578999999863 47889986 9995 5
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+..+.|+.+...+|.+..+.
T Consensus 348 I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 56688999999998887654
No 95
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.87 E-value=6.4e-09 Score=108.78 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=83.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeecccee--ecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALV--LADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~Galv--lAd~gi~~IDEidk~ 445 (621)
-++|.||||||||.+++++++.+.-..+....+ +..+|-....++. ..-++.... .....|+||||||.+
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~-----~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQ-----RYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHH-----HHHHHHHHhhccCCCeEEEEehhhhc
Confidence 689999999999999999999965543321110 0111111100000 001111111 112479999999985
Q ss_pred Chhh---------h---hhhHhhhcceE-EEEecCCe--EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 446 PDAD---------R---TAIHEVMEQQT-ISIAKAGI--MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 446 ~~~~---------~---~~L~eame~q~-isi~k~gi--~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
-..- | ..|+..|+.-+ +++ .|. ...-..++.||||+|... .|++||++
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpG 289 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSL--GGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccc--cccccccccCCCceEEEeCCCcc-------------cCCHhHcCCC
Confidence 4321 1 23445554311 111 232 123356789999999873 69999999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|||-.+. .|+.+....|.+.+++
T Consensus 290 RfDk~i~---lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 290 RMEKFYW---APTREDRIGVVHGIFR 312 (413)
T ss_pred CCCceeC---CCCHHHHHHHHHHHhc
Confidence 9997653 6899999988886653
No 96
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-08 Score=116.33 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=115.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---cEEecCCC-----CccccceEEEeecCcccce-eeeccceeec----CCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---SQYTTGRG-----SSGVGLTAAVMKDPITNEM-VLEGGALVLA----DQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~g~~-----~s~~gLta~~~~~~~~g~~-~l~~GalvlA----d~gi~ 437 (621)
..|++||+|+|||.|++++|..+-. ....-+.+ .|-..|.++ ..|.. .-++|.|.-| .-+|+
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa-----PPGYVGyeeGG~LTEaVRr~PySVi 597 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA-----PPGYVGYEEGGQLTEAVRRKPYSVI 597 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC-----CCCCceeccccchhHhhhcCCCeEE
Confidence 8899999999999999999998542 11100000 000001111 01111 1134444433 24799
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCC---------CCCcccc------cCC
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNP---------KRSIEQN------IQL 502 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~---------~~~~~~~------~~L 502 (621)
++|||+|+.+++.+.|+++|++|+++-++ |.+..+. ++.||+|+|-....-.. .....+. --+
T Consensus 598 LlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F 675 (786)
T COG0542 598 LLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHF 675 (786)
T ss_pred EechhhhcCHHHHHHHHHHhcCCeeecCC-CCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999874 4454443 37999999976321110 1111111 158
Q ss_pred CHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy11213 503 PAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYT 581 (621)
Q Consensus 503 ~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~ 581 (621)
+|+++.|+|-+++ ....+.+.-.+|+...+. .+.+-+. -+.....+++++.++|.+...
T Consensus 676 ~PEFLNRid~II~-F~~L~~~~l~~Iv~~~L~------------------~l~~~L~-~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 676 RPEFLNRIDEIIP-FNPLSKEVLERIVDLQLN------------------RLAKRLA-ERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred CHHHHhhcccEEe-ccCCCHHHHHHHHHHHHH------------------HHHHHHH-hCCceEEECHHHHHHHHHhcc
Confidence 9999999996444 456667777777766543 2333333 122277889999999887543
No 97
>PLN03025 replication factor C subunit; Provisional
Probab=98.86 E-value=1e-08 Score=108.26 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=77.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
.|+||+||||||||++++++++.+....+. .....+.++..+... -..+.-....+......|++|||+|.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~----~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~ 110 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYK----EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 110 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCc----cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence 389999999999999999999885221110 000011111100000 00000000001112346999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
|+...+++|+..||.- +..+.++.++|... .+.++|.||+ ..+-...++.++
T Consensus 111 lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~-------------~i~~~L~SRc--~~i~f~~l~~~~ 162 (319)
T PLN03025 111 MTSGAQQALRRTMEIY-------------SNTTRFALACNTSS-------------KIIEPIQSRC--AIVRFSRLSDQE 162 (319)
T ss_pred cCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc-------------ccchhHHHhh--hcccCCCCCHHH
Confidence 9999999999999841 22244666777542 4778999998 344555566555
Q ss_pred HHHHHHHHH
Q psy11213 525 DLKLAQHIT 533 (621)
Q Consensus 525 d~~ia~~il 533 (621)
-....+.+.
T Consensus 163 l~~~L~~i~ 171 (319)
T PLN03025 163 ILGRLMKVV 171 (319)
T ss_pred HHHHHHHHH
Confidence 555555554
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.86 E-value=2.6e-09 Score=97.53 Aligned_cols=124 Identities=22% Similarity=0.188 Sum_probs=77.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc---ccEEecCCCCccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR---RSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p---r~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEidk 444 (621)
.+++++|+||+|||++++.+++.+. ..++......... ........+. ...........+.++++|||++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE----GLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh----hhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 4899999999999999999998863 1111111000000 0000000000 00111222334679999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
+.+.....+++.|++..... ..+.++.+|+++|+... ..+.+++.+|||..+.
T Consensus 96 ~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~ 148 (151)
T cd00009 96 LSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIV 148 (151)
T ss_pred hhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-----------CCcChhHHhhhccEee
Confidence 98888888888888754322 33567899999998731 3578899999975443
No 99
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.85 E-value=1.5e-08 Score=122.68 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=47.7
Q ss_pred CCeeEecCCCCCChhhh-----hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 434 QGICCIDEFDKLPDADR-----TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~-----~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
.+|++|||||.+...+. ..|+..|+...- ..-...+.||||+|... .|++||++
T Consensus 1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~--------~~s~~~VIVIAATNRPD-------------~LDPALLR 1791 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE--------RCSTRNILVIASTHIPQ-------------KVDPALIA 1791 (2281)
T ss_pred CeEEEEEchhhcCCCccceehHHHHHHHhccccc--------cCCCCCEEEEEeCCCcc-------------cCCHhHcC
Confidence 58999999999876532 344444542100 01123478999999874 69999998
Q ss_pred --cccEEEEecCCCChHHHHHHHH
Q psy11213 509 --RFDLLWLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 509 --RFDli~~~~d~~d~~~d~~ia~ 530 (621)
|||-. +.++.|+....+++..
T Consensus 1792 PGRFDR~-I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1792 PNKLNTC-IKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred CCCCCeE-EEeCCCCchhHHHHHH
Confidence 99944 4555566544444443
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.6e-08 Score=111.65 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=75.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec---------------CCCCccccceEEEeecCcc-cceeeecc-ceeecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT---------------GRGSSGVGLTAAVMKDPIT-NEMVLEGG-ALVLAD 433 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~---------------g~~~s~~gLta~~~~~~~~-g~~~l~~G-alvlAd 433 (621)
.+||+||||||||++|+.+++.+....... |.......+.++..+.-.. .+..-... .-..++
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~ 117 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGK 117 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCC
Confidence 489999999999999999999864321100 0000000111110000000 00000000 012346
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++|||++.+..+.+++|+..||+. +..+. |++|+||. .+++++.|||.
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv~Ilattn~~--------------kl~~~L~SR~~- 169 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVVFVLATTNLE--------------KVPPTIISRCQ- 169 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEEEEEEeCChH--------------hhhHHHhcCcE-
Confidence 679999999999998999999999862 11233 45566654 47899999993
Q ss_pred EEEecCCCChHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il 533 (621)
.+....++.+.-..+++.+.
T Consensus 170 -vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 170 -VIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred -EEEECCccHHHHHHHHHHHH
Confidence 44445555555444444443
No 101
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.85 E-value=7.3e-09 Score=114.50 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=81.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCccccee--ee---ccceeec---CCCeeEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMV--LE---GGALVLA---DQGICCIDE 441 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~--l~---~GalvlA---d~gi~~IDE 441 (621)
++||+||||||||++++++++.+....+..... .....+.++.......|+.. +. ..+.-.+ ...|+||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence 799999999999999999999876543321000 00000000000000011100 00 0011111 246999999
Q ss_pred CCCCChh------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213 442 FDKLPDA------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS- 508 (621)
Q Consensus 442 idk~~~~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls- 508 (621)
+|.+... ..+.|+..|+. ... ..+..||||+|... .|+++|++
T Consensus 298 iD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d-------------~LDpALlRp 353 (512)
T TIGR03689 298 MDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNRED-------------MIDPAILRP 353 (512)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChh-------------hCCHhhcCc
Confidence 9986421 11345554542 111 13578999999874 59999998
Q ss_pred -cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 -RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 -RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|||.. +.++.|+.+...+|.++.+.
T Consensus 354 GRfD~~-I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 354 GRLDVK-IRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccceE-EEeCCCCHHHHHHHHHHHhh
Confidence 99955 67789999999999987764
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.85 E-value=1.6e-08 Score=119.55 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=106.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---EE-e-cCCCC---ccccceEEEeecCcccceee-eccc----eeecCCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---QY-T-TGRGS---SGVGLTAAVMKDPITNEMVL-EGGA----LVLADQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~-~-~g~~~---s~~gLta~~~~~~~~g~~~l-~~Ga----lvlAd~gi~ 437 (621)
++||+||||||||.+++++++.+.+. .. . +.... +...|.++. .|.... +.|. +-....+|+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~-----pgy~g~~~~g~l~~~v~~~p~~vL 674 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAP-----PGYVGYEEGGYLTEAVRRRPYSVI 674 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCC-----CcccccchhHHHHHHHHhCCCCeE
Confidence 69999999999999999999886321 11 1 00000 000111100 010000 1122 222245899
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCC----CCCCCC--Ccc------cccCCCHh
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYG----RYNPKR--SIE------QNIQLPAA 505 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g----~~~~~~--~~~------~~~~L~~a 505 (621)
+|||+++++++.++.|+.+|+++.++-. .|....+. ++.||+|+|.... +|.... ... ..-.+.++
T Consensus 675 llDEieka~~~v~~~Ll~ile~g~l~d~-~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 752 (857)
T PRK10865 675 LLDEVEKAHPDVFNILLQVLDDGRLTDG-QGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPE 752 (857)
T ss_pred EEeehhhCCHHHHHHHHHHHhhCceecC-CceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHH
Confidence 9999999999999999999999988753 35444443 3779999997421 121110 001 12248899
Q ss_pred HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Q psy11213 506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVK 578 (621)
Q Consensus 506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~ 578 (621)
|++|+|-+++. .+++.+.-.+|+++.+... .++ ..+. ....+++++.++|.+
T Consensus 753 LlnRld~iivF-~PL~~edl~~Iv~~~L~~l-----------------~~r---l~~~gi~l~is~~al~~L~~ 805 (857)
T PRK10865 753 FINRIDEVVVF-HPLGEQHIASIAQIQLQRL-----------------YKR---LEERGYEIHISDEALKLLSE 805 (857)
T ss_pred HHHhCCeeEec-CCCCHHHHHHHHHHHHHHH-----------------HHH---HHhCCCcCcCCHHHHHHHHH
Confidence 99999965555 4566666667776665321 111 1111 246788888888775
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.84 E-value=8.3e-09 Score=110.98 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=79.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+... ..++..... . .+...+ ...+-.| ..+|++|||+|.+..
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~-g--~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYI-G--EGARLV-REIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhh-h--HHHHHH-HHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 6999999999999999999998765543221 001110000 0 000000 0011111 347999999998732
Q ss_pred -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
..+..+.+.+.+- .|. .-..++.||||+|... .+++++++ |||- .
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~-~ 287 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAEL------DGF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDR-I 287 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHh------hCC--CCCCCEEEEEecCChh-------------hCChhhcCcccCce-E
Confidence 2233444544321 110 1123578999999763 58899986 9995 4
Q ss_pred EecCCCChHHHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il 533 (621)
+.++.|+.+...+|.+..+
T Consensus 288 i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 6778899988888876543
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.84 E-value=1.3e-08 Score=117.40 Aligned_cols=124 Identities=24% Similarity=0.324 Sum_probs=77.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecc--ce-eecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG--AL-VLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G--al-vlAd~gi~~IDEidk~~~ 447 (621)
|++|+||||||||++++.+++........... +..|+ .+ ..+. ++.. .+ ....+++++|||++.++.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna--~~~~i-----~d--ir~~-i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNA--VLAGV-----KD--LRAE-VDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceeehh--hhhhh-----HH--HHHH-HHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 99999999999999999999875432211110 00000 00 0000 0000 00 012357999999999999
Q ss_pred hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
..+.+|+..||++.+ .+|+++ ||. ..+.++++||+. ++....++.+.-
T Consensus 124 ~qQdaLL~~lE~g~I---------------iLI~aTTenp~-------------~~l~~aL~SR~~--v~~l~pLs~edi 173 (725)
T PRK13341 124 AQQDALLPWVENGTI---------------TLIGATTENPY-------------FEVNKALVSRSR--LFRLKSLSDEDL 173 (725)
T ss_pred HHHHHHHHHhcCceE---------------EEEEecCCChH-------------hhhhhHhhcccc--ceecCCCCHHHH
Confidence 999999999987654 344444 443 257899999984 344566666666
Q ss_pred HHHHHHHHh
Q psy11213 526 LKLAQHITY 534 (621)
Q Consensus 526 ~~ia~~il~ 534 (621)
..++++++.
T Consensus 174 ~~IL~~~l~ 182 (725)
T PRK13341 174 HQLLKRALQ 182 (725)
T ss_pred HHHHHHHHH
Confidence 666666553
No 105
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.84 E-value=7e-09 Score=120.15 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=111.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeec----cceeecCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEG----GALVLADQG 435 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~----GalvlAd~g 435 (621)
.|+||+||||||||.+++.++...-. .+|.... ..+.+.. ...|+|.-.- ..+..+.++
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~----~~llaG~---~~~Ge~e~rl~~l~~~l~~~~~~ 280 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI----GSLLAGT---KYRGDFEKRFKALLKQLEQDTNS 280 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH----HHHhccc---chhhhHHHHHHHHHHHHHhcCCC
Confidence 39999999999999999999875311 1111100 0011100 0122222110 011123568
Q ss_pred eeEecCCCCCC------h---hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 436 ICCIDEFDKLP------D---ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 436 i~~IDEidk~~------~---~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
|+||||++.+- . +..+.|..+++.+ +..+|||+|+.+ +..-+..+++|
T Consensus 281 ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------------~i~vIgATt~~E--------~~~~~~~D~AL 337 (758)
T PRK11034 281 ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVIGSTTYQE--------FSNIFEKDRAL 337 (758)
T ss_pred EEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------------CeEEEecCChHH--------HHHHhhccHHH
Confidence 99999999762 1 1122344455433 356899999862 33335789999
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHH
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTEL 583 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~l 583 (621)
.+||+ .+.++.|+.++...|.+.+....... ..-.++.+.++..+..+.++ .-.+++.|.+.+-+.-...
T Consensus 338 ~rRFq--~I~v~ePs~~~~~~IL~~~~~~ye~~-----h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~ 409 (758)
T PRK11034 338 ARRFQ--KIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_pred HhhCc--EEEeCCCCHHHHHHHHHHHHHHhhhc-----cCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence 99996 46778999999999998775443221 23467888888888888876 5678899998887765433
No 106
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.83 E-value=7.2e-09 Score=102.31 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=82.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcc--cceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPIT--NEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~--g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
|||++||||||||++++++|..+.-..+.... ..|.+..+-|... .+..-.+. .+-.+|+||||+|.+.-+
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vka----t~liGehVGdgar~Ihely~rA~---~~aPcivFiDE~DAiaLd 225 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKA----TELIGEHVGDGARRIHELYERAR---KAAPCIVFIDELDAIALD 225 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEech----HHHHHHHhhhHHHHHHHHHHHHH---hcCCeEEEehhhhhhhhh
Confidence 99999999999999999999987655543211 1122211111100 00000111 123589999999986432
Q ss_pred ------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 449 ------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 449 ------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
.-++|+.-|+ |+. -+..+..|||+|... -|++++.|||. --+-
T Consensus 226 RryQelRGDVsEiVNALLTelD---------gi~--eneGVvtIaaTN~p~-------------~LD~aiRsRFE-eEIE 280 (368)
T COG1223 226 RRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVTIAATNRPE-------------LLDPAIRSRFE-EEIE 280 (368)
T ss_pred hhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEEEeecCChh-------------hcCHHHHhhhh-heee
Confidence 3356776664 322 234456677777653 58999999995 5555
Q ss_pred cCCCChHHHHHHHHHHHh
Q psy11213 517 QDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il~ 534 (621)
.-.|+.++..+|.+..+.
T Consensus 281 F~LP~~eEr~~ile~y~k 298 (368)
T COG1223 281 FKLPNDEERLEILEYYAK 298 (368)
T ss_pred eeCCChHHHHHHHHHHHH
Confidence 667888888888876654
No 107
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.82 E-value=1.9e-08 Score=103.29 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=128.8
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~I 439 (621)
-+-++|+.|++||||-.++|+++..+||.. ..+...+.. ..|++.. .| -.=..|.+-+|+||.+++
T Consensus 226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~a-----pg-~~gk~GffE~AngGTVlL 299 (511)
T COG3283 226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHA-----PG-DEGKKGFFEQANGGTVLL 299 (511)
T ss_pred cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCC-----CC-CCCccchhhhccCCeEEe
Confidence 466999999999999999999999988853 222222211 1122211 11 112468889999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
|||..|++.-|..|+..+.++++.- -|.......++.||+|+--.- ..+.+.-.+.+.|+-|....-+..++
T Consensus 300 DeIgEmSp~lQaKLLRFL~DGtFRR--VGee~Ev~vdVRVIcatq~nL------~~lv~~g~fReDLfyRLNVLtl~~Pp 371 (511)
T COG3283 300 DEIGEMSPRLQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQVNL------VELVQKGKFREDLFYRLNVLTLNLPP 371 (511)
T ss_pred ehhhhcCHHHHHHHHHHhcCCceee--cCCcceEEEEEEEEecccccH------HHHHhcCchHHHHHHHhheeeecCCc
Confidence 9999999999999999999999865 577777788899999986430 01233335667777787533333221
Q ss_pred CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213 520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599 (621)
Q Consensus 520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R 599 (621)
. ++...+..++..-++.++......-.|+++++...++.+| .++-++|
T Consensus 372 L-------------------Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y-------------~WpGNVR 419 (511)
T COG3283 372 L-------------------RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY-------------AWPGNVR 419 (511)
T ss_pred c-------------------ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc-------------CCCccHH
Confidence 1 1111122223333344444433333899999998888765 5667899
Q ss_pred HHHHHHHHH
Q psy11213 600 NLLAILRLS 608 (621)
Q Consensus 600 ~leslirla 608 (621)
||.+.+--|
T Consensus 420 qL~N~iyRA 428 (511)
T COG3283 420 QLKNAIYRA 428 (511)
T ss_pred HHHHHHHHH
Confidence 999887544
No 108
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.81 E-value=5.1e-08 Score=104.29 Aligned_cols=139 Identities=19% Similarity=0.323 Sum_probs=90.9
Q ss_pred CCCeeEecCCCCCC------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc
Q psy11213 433 DQGICCIDEFDKLP------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI 500 (621)
Q Consensus 433 d~gi~~IDEidk~~------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~ 500 (621)
+.||+|||||||+. +.+|..|+..||.-++++ |.|..-+-+ ..+|| .|.|+..++ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~--ILFI~-----~GAF~~~kp----~ 316 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDH--ILFIA-----SGAFHVSKP----S 316 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCc--eeEEe-----cCCcCCCCh----h
Confidence 88999999999965 236889999999888876 333222211 23333 355554322 3
Q ss_pred CCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Q psy11213 501 QLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVK 578 (621)
Q Consensus 501 ~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~ 578 (621)
+|-|.|.-||- +.+..+..+.+.-..|... -....+++|.+.-+.. .-.++++|.+.|++
T Consensus 317 DlIPEl~GR~P-i~v~L~~L~~~dL~~ILte-----------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~ 378 (443)
T PRK05201 317 DLIPELQGRFP-IRVELDALTEEDFVRILTE-----------------PKASLIKQYQALLATEGVTLEFTDDAIRRIAE 378 (443)
T ss_pred hccHHHhCccc-eEEECCCCCHHHHHHHhcC-----------------ChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHH
Confidence 57899999996 5566677777665554421 1245788888876655 56789999999998
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q psy11213 579 AYTELRKVARNSRDMSYTSARNLLAILRL 607 (621)
Q Consensus 579 ~y~~lR~~~~~~~~~~~~t~R~leslirl 607 (621)
...++... ...+..|.|.+++.=
T Consensus 379 ~A~~~N~~------~~~iGAR~LrtI~E~ 401 (443)
T PRK05201 379 IAYQVNEK------TENIGARRLHTVMEK 401 (443)
T ss_pred HHHHhccc------ccccchhhHHHHHHH
Confidence 76543221 122567887777653
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.79 E-value=7e-08 Score=96.78 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=98.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
+++|+|+||||||+|++++++.+.. ..|.+..... ... -...++++++|||++.++
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~--------------~~~------~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL--------------LAF------DFDPEAELYAVDDVERLD 103 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH--------------HHH------hhcccCCEEEEeChhhcC
Confidence 8999999999999999999987421 1121111000 000 112346899999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCChHHH
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDND 525 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~~~d 525 (621)
...+..|+.+|+.-. -.....++.+++... ....+.+.|.|||.- ..+....++.+.+
T Consensus 104 ~~~~~~L~~~~~~~~-----------~~~~~~vl~~~~~~~----------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~ 162 (227)
T PRK08903 104 DAQQIALFNLFNRVR-----------AHGQGALLVAGPAAP----------LALPLREDLRTRLGWGLVYELKPLSDADK 162 (227)
T ss_pred chHHHHHHHHHHHHH-----------HcCCcEEEEeCCCCH----------HhCCCCHHHHHHHhcCeEEEecCCCHHHH
Confidence 888888888886421 011233444544321 012366889999842 4555566666555
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q psy11213 526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL 605 (621)
Q Consensus 526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~lesli 605 (621)
..++..+ +++.+..+++++.++|.+. ++-++|++..++
T Consensus 163 ~~~l~~~----------------------------~~~~~v~l~~~al~~L~~~--------------~~gn~~~l~~~l 200 (227)
T PRK08903 163 IAALKAA----------------------------AAERGLQLADEVPDYLLTH--------------FRRDMPSLMALL 200 (227)
T ss_pred HHHHHHH----------------------------HHHcCCCCCHHHHHHHHHh--------------ccCCHHHHHHHH
Confidence 4444332 2223577888888877752 223678888777
Q ss_pred HHHHHHHHhcC
Q psy11213 606 RLSTALARLRL 616 (621)
Q Consensus 606 rla~A~Akl~l 616 (621)
+.-.+.|....
T Consensus 201 ~~l~~~~~~~~ 211 (227)
T PRK08903 201 DALDRYSLEQK 211 (227)
T ss_pred HHHHHHHHHhC
Confidence 77666665544
No 110
>KOG0736|consensus
Probab=98.79 E-value=2.1e-08 Score=111.63 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=89.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
...|||+||||||||.+||++|....-..+ +=+|+.- +|-....+++ +++. | -.|..+|+|+||+|.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~Fl-SVKGPELLNMYVGqSE~NVR~------VFer-A-R~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFL-SVKGPELLNMYVGQSEENVRE------VFER-A-RSAAPCVIFFDELDS 775 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEE-eecCHHHHHHHhcchHHHHHH------HHHH-h-hccCCeEEEeccccc
Confidence 357999999999999999999998654433 3333321 1111111111 1110 0 023468999999999
Q ss_pred CChh-------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 445 LPDA-------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 445 ~~~~-------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
+.|. +-+.|+.-|+ |....-...+.||||+|... -|+++||+ |
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFViGATNRPD-------------LLDpALLRPGR 833 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVIGATNRPD-------------LLDPALLRPGR 833 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEEecCCCcc-------------ccChhhcCCCc
Confidence 7654 2234554443 44443345689999999763 48999997 9
Q ss_pred ccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il~~ 535 (621)
||-.+.+-...+.+....+.+.+.+.
T Consensus 834 FDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 834 FDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred cceeEEecCCccHHHHHHHHHHHHHH
Confidence 99888888877888877888777543
No 111
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.78 E-value=1.6e-08 Score=110.29 Aligned_cols=132 Identities=23% Similarity=0.281 Sum_probs=78.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~~ 446 (621)
++||+||||||||++++++++.+....+... ++ .+.. ...|+- ......+..| ..+|+||||+|.+.
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V~-~s---eL~~-----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRVV-GS---ELIQ-----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIG 289 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEEe-cc---hhhh-----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHh
Confidence 7999999999999999999998654432211 00 0111 001110 0000111112 24799999998753
Q ss_pred hh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 447 DA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 447 ~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
.. .+..+.+.+.+- .|.. -..++.||+|+|... .|++++++ |||.
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~- 347 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDR- 347 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEE-
Confidence 21 233344444321 0111 123478999999763 58899985 9984
Q ss_pred EEecCCCChHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il 533 (621)
.+.++.|+.+....|.+..+
T Consensus 348 ~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 348 KIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56778999999988888654
No 112
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.78 E-value=3.1e-08 Score=116.04 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=109.5
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEe-c-CCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCC
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT-T-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFD 443 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEid 443 (621)
...++|+-||+.+|||.++.++|+...+-+.- . ...+......|+.+.+ .+|...++.|+||-| .|-.+++||++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccc
Confidence 67899999999999999999999997665432 2 2222223334443333 378899999999988 56789999999
Q ss_pred CCChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 444 KLPDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 444 k~~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
.++.++..+|...+++ +.+-|........-+..|.+.||.||.+| +.+.-.|+.|+..|| |-....|.|
T Consensus 966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-------YgGRK~LSrAFRNRF-lE~hFddip 1035 (4600)
T COG5271 966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-------YGGRKGLSRAFRNRF-LEMHFDDIP 1035 (4600)
T ss_pred cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-------ccchHHHHHHHHhhh-HhhhcccCc
Confidence 9999999999999975 66778777777777888999999999854 344457999999999 444444443
No 113
>KOG0730|consensus
Probab=98.77 E-value=9.3e-09 Score=113.20 Aligned_cols=131 Identities=23% Similarity=0.295 Sum_probs=84.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeec---cceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEG---GALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~---GalvlAd~gi~~IDEidk~~~ 447 (621)
.|||+||||||||+++|++|+.+....... +++ .|....+- .+|..+.. -|--.| ..|+|+||||.+..
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~~~nFlsv-kgp---EL~sk~vG---eSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEAGMNFLSV-KGP---ELFSKYVG---ESERAIREVFRKARQVA-PCIIFFDEIDALAG 541 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhhcCCeeec-cCH---HHHHHhcC---chHHHHHHHHHHHhhcC-CeEEehhhHHhHhh
Confidence 699999999999999999999865443221 111 11110000 11111100 011122 38999999998533
Q ss_pred -----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 448 -----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 448 -----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
...+.|+.-|+. +... .++.||||+|... .|++|||+ ||| -.
T Consensus 542 ~R~g~~~~v~~RVlsqLLtEmDG---------~e~~--k~V~ViAATNRpd-------------~ID~ALlRPGRlD-~i 596 (693)
T KOG0730|consen 542 SRGGSSSGVTDRVLSQLLTEMDG---------LEAL--KNVLVIAATNRPD-------------MIDPALLRPGRLD-RI 596 (693)
T ss_pred ccCCCccchHHHHHHHHHHHccc---------cccc--CcEEEEeccCChh-------------hcCHHHcCCcccc-ee
Confidence 234566666653 2211 3578999999873 69999999 999 55
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+.++.||.+...+|.+.-++
T Consensus 597 iyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 597 IYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred EeecCccHHHHHHHHHHHHh
Confidence 66799999999988875543
No 114
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.76 E-value=1.7e-08 Score=111.25 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCcc---ccceEEEeecCccccee-eeccceeecCCCeeEe
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSG---VGLTAAVMKDPITNEMV-LEGGALVLADQGICCI 439 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~---~gLta~~~~~~~~g~~~-l~~GalvlAd~gi~~I 439 (621)
-++++||.|.|||||-.|+|++.+.+... ...++..+.. ..|++++- ...+|.+. --.|.+-+||+|.+|+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~-GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA-GAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCc-cccccchhccccccceecCCCccHH
Confidence 57899999999999999999999885421 1222222111 11222111 11122221 2357888999999999
Q ss_pred cCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 440 DEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 440 DEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
|||..|+-+.|+.|+.+++++.|.- -|... .+.++.||+|++..- ..+.++-.+.+.|+.|..-..+..+.
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p--~g~~~-~~vdirvi~ath~dl------~~lv~~g~fredLyyrL~~~~i~lP~ 484 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTP--LGGTR-IKVDIRVIAATHRDL------AQLVEQGRFREDLYYRLNAFVITLPP 484 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceec--cCCcc-eeEEEEEEeccCcCH------HHHHHcCCchHHHHHHhcCeeeccCc
Confidence 9999999999999999999999874 24444 788899999998651 12444556788888887644444433
Q ss_pred C-ChHHHHHHHHHHHh
Q psy11213 520 P-DRDNDLKLAQHITY 534 (621)
Q Consensus 520 ~-d~~~d~~ia~~il~ 534 (621)
. +...+..+..+++.
T Consensus 485 lr~R~d~~~~l~~~~~ 500 (606)
T COG3284 485 LRERSDRIPLLDRILK 500 (606)
T ss_pred hhcccccHHHHHHHHH
Confidence 2 22333344444443
No 115
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.7e-08 Score=110.28 Aligned_cols=126 Identities=25% Similarity=0.297 Sum_probs=83.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccc-----eee---cCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGA-----LVL---ADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Ga-----lvl---Ad~gi~~IDEi 442 (621)
.+||+||||||||.|+++++..+...++... +++ ++ +.|.-+... +-. ...+|+||||+
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~-~~~---l~---------sk~vGesek~ir~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVK-GSE---LL---------SKWVGESEKNIRELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEee-CHH---Hh---------ccccchHHHHHHHHHHHHHcCCCcEEEEEch
Confidence 7999999999999999999997544443211 111 11 122211111 111 23689999999
Q ss_pred CCCChh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 443 DKLPDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 443 dk~~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
|++.+. ..+.++..|+... -..++.||||+|... .+++++++ |
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN~p~-------------~ld~a~lR~gR 400 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATNRPD-------------DLDPALLRPGR 400 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCCCcc-------------ccCHhhcccCc
Confidence 995432 3344555553211 012267999999884 68999999 9
Q ss_pred ccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|| ..+.++.||.+...++.++.+.
T Consensus 401 fd-~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 401 FD-RLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred cc-eEeecCCCCHHHHHHHHHHHhc
Confidence 99 6666789999999998887764
No 116
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.74 E-value=5.2e-08 Score=104.16 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=92.5
Q ss_pred cCCCeeEecCCCCCCh------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc
Q psy11213 432 ADQGICCIDEFDKLPD------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN 499 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~ 499 (621)
+..||+|||||||+.. .+|..|+..||..++++ |.|...+-+ ..+|| .|.|...+ .
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~--ILFI~-----~GAF~~~k----p 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDH--ILFIA-----AGAFQLAK----P 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCc--eeEEe-----cCCcCCCC----h
Confidence 5789999999999653 26789999999888876 444322222 23333 34554322 2
Q ss_pred cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHH
Q psy11213 500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIV 577 (621)
Q Consensus 500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~ 577 (621)
.+|-|.|.-||- +.+..+..+.+.-..|... -....+++|.+.-+.. .-.++++|.+.|+
T Consensus 314 ~DlIPEl~GR~P-i~v~L~~L~~edL~rILte-----------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA 375 (441)
T TIGR00390 314 SDLIPELQGRFP-IRVELQALTTDDFERILTE-----------------PKNSLIKQYKALMKTEGVNIEFSDEAIKRIA 375 (441)
T ss_pred hhccHHHhCccc-eEEECCCCCHHHHHHHhcC-----------------ChhHHHHHHHHHHhhcCcEEEEeHHHHHHHH
Confidence 357899999996 5666677777665554421 1135788888877765 5677999999999
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHH
Q psy11213 578 KAYTELRKVARNSRDMSYTSARNLLAILRLS 608 (621)
Q Consensus 578 ~~y~~lR~~~~~~~~~~~~t~R~leslirla 608 (621)
+...++... ...+..|.|.+++.-.
T Consensus 376 ~~A~~~N~~------~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 376 ELAYNVNEK------TENIGARRLHTVLERL 400 (441)
T ss_pred HHHHHhccc------ccccchhhHHHHHHHH
Confidence 876554222 1225678887776543
No 117
>KOG0733|consensus
Probab=98.73 E-value=1.6e-08 Score=109.98 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=87.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
.|||-||||||||.||+++|..+.-..+......--.|..+.... .-.+..-++- ..-.+|+||||||-+.+.-.
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEk--kiRelF~~A~---~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEK--KIRELFDQAK---SNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHH--HHHHHHHHHh---ccCCeEEEeecccccccchh
Confidence 699999999999999999999976665542211100111111000 0000000111 11258999999999877533
Q ss_pred hhhHhhhcceEEE-----EecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCCCChH
Q psy11213 451 TAIHEVMEQQTIS-----IAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDKPDRD 523 (621)
Q Consensus 451 ~~L~eame~q~is-----i~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~~d~~ 523 (621)
. -.+-||++-+. ...-+...+....+.||||+|... .|.++|.+ ||| .-+....|++.
T Consensus 300 ~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFd-rEI~l~vP~e~ 364 (802)
T KOG0733|consen 300 E-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFD-REICLGVPSET 364 (802)
T ss_pred h-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-------------ccCHHHhcccccc-ceeeecCCchH
Confidence 2 23334433221 100111122346699999999763 48899986 999 77778899999
Q ss_pred HHHHHHHHHHh
Q psy11213 524 NDLKLAQHITY 534 (621)
Q Consensus 524 ~d~~ia~~il~ 534 (621)
...+|.+.+..
T Consensus 365 aR~~IL~~~~~ 375 (802)
T KOG0733|consen 365 AREEILRIICR 375 (802)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 118
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=8.2e-08 Score=110.77 Aligned_cols=134 Identities=24% Similarity=0.260 Sum_probs=74.8
Q ss_pred cE-EEeCCCCcchhHHHHHHHhhccccEEe----cCCCCc----cccceEE-EeecCc--ccc---eeeeccce---eec
Q psy11213 371 NI-CLMGDPGVAKSQLLSYIERLARRSQYT----TGRGSS----GVGLTAA-VMKDPI--TNE---MVLEGGAL---VLA 432 (621)
Q Consensus 371 ~v-LL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~s----~~gLta~-~~~~~~--~g~---~~l~~Gal---vlA 432 (621)
|. ||+||||||||++++.+++.+...... +|.-.+ ..|...- ...+.. .|. ..+..-.. ..+
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~g 118 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRG 118 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence 64 899999999999999999986542111 111000 0000000 001111 010 00000000 112
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
...|++|||+++|+.+.+++|+..||+- +..+. |++|+|+. .|.++|+||+
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vrFILaTTe~~--------------kLl~TIlSRC- 170 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVKFLLATTDPQ--------------KLPVTVLSRC- 170 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeEEEEECCCch--------------hchHHHHHhh-
Confidence 4469999999999999999999999962 22333 34444443 4789999999
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il 533 (621)
.+| -+...+.+.-...+++++
T Consensus 171 q~f-~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 171 LQF-NLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred eEE-eCCCCCHHHHHHHHHHHH
Confidence 343 344444444444445554
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.72 E-value=5e-08 Score=115.40 Aligned_cols=175 Identities=18% Similarity=0.221 Sum_probs=105.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCcccceeeecc-c---eeec-CCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-A---LVLA-DQG 435 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-a---lvlA-d~g 435 (621)
|++|+||||||||++++.++..+... ++....+. +.+.. ...|+|.-.-- . +..+ .+.
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~----l~ag~---~~~g~~e~~lk~~~~~~~~~~~~~ 273 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----LVAGA---KYRGEFEERLKGVLNDLAKQEGNV 273 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh----hhhcc---chhhhhHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999886432 11110000 11100 01232211000 0 0111 235
Q ss_pred eeEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 436 ICCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 436 i~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
|+||||++.+... ..+.|..+++. ....+|||+|+.+ +..-++++++|.
T Consensus 274 ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~---------------g~l~~IgaTt~~e--------~r~~~~~d~al~ 330 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDE--------YRQYIEKDAALE 330 (857)
T ss_pred EEEEecHHHhccCCCCccchhHHHHhcchhhc---------------CCCeEEEcCCCHH--------HHHHhhhcHHHH
Confidence 9999999987633 23344444433 2467899999873 333367899999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTE 582 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~ 582 (621)
+||+. +....|+.+....|.+.+...... ...-.++.+.+...+..+.++ ...+++.|.+.+-..-..
T Consensus 331 rRf~~--i~v~eP~~~~~~~iL~~l~~~~e~-----~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 331 RRFQK--VFVAEPSVEDTIAILRGLKERYEL-----HHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred hhCCE--EEeCCCCHHHHHHHHHHHhhhhcc-----CCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 99974 446778888877777765432211 112346677777766666665 678899998877655433
No 120
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.71 E-value=5.5e-08 Score=111.80 Aligned_cols=131 Identities=25% Similarity=0.287 Sum_probs=81.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+.. +... ...|..+...++ .+ ..+ ......|+||||+|.+..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~----~f-~~a---~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD----MF-EQA---KKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHH----HH-HHH---HhcCCcEEEehhHhhhhh
Confidence 699999999999999999999876554331 1110 001111100000 00 000 001347999999998732
Q ss_pred h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
. ..+.++..|+.- .-+.++.+|||+|+.. .|++++++ |||
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd 314 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD 314 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence 1 123344444421 1145688999999874 58999996 999
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~ 534 (621)
..+.++.|+.+...+|.+..+.
T Consensus 315 -r~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 315 -RQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred -eEEEcCCCCHHHHHHHHHHHhh
Confidence 5666889999888888776553
No 121
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.70 E-value=4.1e-08 Score=114.96 Aligned_cols=130 Identities=23% Similarity=0.303 Sum_probs=79.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee---ecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV---LADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv---lAd~gi~~IDEidk~~~ 447 (621)
.+||+||||||||++++++|+.+....+... ++ .+....+ . ..+..+. -.+. .+..+|+||||+|.+.+
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v~-~~---~l~~~~v-G--ese~~i~-~~f~~A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAVR-GP---EILSKWV-G--ESEKAIR-EIFRKARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEe-hH---HHhhccc-C--cHHHHHH-HHHHHHHhcCCEEEEEEChhhhhc
Confidence 6999999999999999999998654433211 00 0110000 0 0000000 0011 12358999999998643
Q ss_pred h------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 448 A------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 448 ~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
. ..+.|+..|+. .. -+.++.||||+|... .|++++++ |||.
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg---------~~--~~~~v~vI~aTn~~~-------------~ld~allRpgRfd~- 615 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDG---------IQ--ELSNVVVIAATNRPD-------------ILDPALLRPGRFDR- 615 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhc---------cc--CCCCEEEEEeCCChh-------------hCCHhhcCCCccce-
Confidence 2 22345555542 11 134588999999873 58999996 9995
Q ss_pred EEecCCCChHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il 533 (621)
.+.++.|+.+...+|.+...
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHh
Confidence 46678999999988876443
No 122
>KOG0733|consensus
Probab=98.69 E-value=6.2e-08 Score=105.54 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=84.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--ccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
-.|||+||||||||.|||++|+.+.-. |.+=+|+. |....+-+.. -.....++-+- -.+|+|+||+|.+-+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~N-FisVKGPE---LlNkYVGESErAVR~vFqRAR~s---aPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGAN-FISVKGPE---LLNKYVGESERAVRQVFQRARAS---APCVIFFDEIDALVP 618 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCc-eEeecCHH---HHHHHhhhHHHHHHHHHHHhhcC---CCeEEEecchhhcCc
Confidence 379999999999999999999985433 22223222 1110000000 00000111111 258999999998754
Q ss_pred h-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 448 A-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 448 ~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
. ..+.|+.-|+. ... .-.+.||||+|... -+++|+|+ ||| -.
T Consensus 619 ~R~~~~s~~s~RvvNqLLtElDG---------l~~--R~gV~viaATNRPD-------------iIDpAiLRPGRlD-k~ 673 (802)
T KOG0733|consen 619 RRSDEGSSVSSRVVNQLLTELDG---------LEE--RRGVYVIAATNRPD-------------IIDPAILRPGRLD-KL 673 (802)
T ss_pred ccCCCCchhHHHHHHHHHHHhcc---------ccc--ccceEEEeecCCCc-------------ccchhhcCCCccC-ce
Confidence 3 33556665642 111 11278999999763 48899997 999 56
Q ss_pred EecCCCChHHHHHHHHHHHhh
Q psy11213 515 LIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~ 535 (621)
+.++.|+.++...|.+.+.+.
T Consensus 674 LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 674 LYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred eeecCCCHHHHHHHHHHHhcc
Confidence 667999999999999888764
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.68 E-value=1.5e-07 Score=94.07 Aligned_cols=167 Identities=16% Similarity=0.230 Sum_probs=97.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
+++|+|+||||||++++++++.+.. .+|........ .... + + .. +...++++|||++.+.
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~-~-~--~~--~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ----------ADPE-V-L--EG--LEQADLVCLDDVEAIA 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH----------hHHH-H-H--hh--cccCCEEEEeChhhhc
Confidence 8999999999999999999987532 12221111000 0000 0 0 00 1234799999999998
Q ss_pred hhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC-HhHhcccc-EEEEecCCCCh
Q psy11213 447 DAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP-AALLSRFD-LLWLIQDKPDR 522 (621)
Q Consensus 447 ~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~-~aLlsRFD-li~~~~d~~d~ 522 (621)
... +..|..+++... ..+..+|.|+|..... ..+. +.|.+||. ...+....++.
T Consensus 104 ~~~~~~~~L~~~l~~~~------------~~~~~iIits~~~~~~----------~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVR------------EAGGRLLIAGRAAPAQ----------LPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred CChHHHHHHHHHHHHHH------------HcCCeEEEECCCChHH----------CCcccHHHHHHHhcCeeEecCCCCH
Confidence 754 777887765311 0112456666653211 1233 78899985 23444555555
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213 523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL 602 (621)
Q Consensus 523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le 602 (621)
+++..++++.. .+....+++++.+.|... ++-++|+|.
T Consensus 162 ~e~~~~l~~~~----------------------------~~~~~~~~~~~l~~L~~~--------------~~gn~r~L~ 199 (226)
T TIGR03420 162 EEKIAALQSRA----------------------------ARRGLQLPDEVADYLLRH--------------GSRDMGSLM 199 (226)
T ss_pred HHHHHHHHHHH----------------------------HHcCCCCCHHHHHHHHHh--------------ccCCHHHHH
Confidence 55554443321 122466788888777752 123688888
Q ss_pred HHHHHHHHHHHhcCC
Q psy11213 603 AILRLSTALARLRLC 617 (621)
Q Consensus 603 slirla~A~Akl~lr 617 (621)
.++.-+.+.|.-..+
T Consensus 200 ~~l~~~~~~~~~~~~ 214 (226)
T TIGR03420 200 ALLDALDRASLAAKR 214 (226)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888876655443
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.65 E-value=5.6e-08 Score=114.91 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=110.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeeeccce----eecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL----VLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal----vlAd~gi 436 (621)
|++|+||||||||.+++.+|..... .++....+ .+.+.. ...|+|.-.-..+ ....+.|
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~----~l~ag~---~~~ge~e~rl~~i~~~~~~~~~~I 274 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG----LLLAGT---KYRGEFEERLKRIFDEIQENNNII 274 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH----HHhccC---CCccHHHHHHHHHHHHHHhcCCeE
Confidence 8999999999999999999887532 12211110 011110 1123332110111 1123468
Q ss_pred eEecCCCCCChh--------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 437 CCIDEFDKLPDA--------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 437 ~~IDEidk~~~~--------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
+||||++.+... ..+.|..++..+ ...+|||+|+.+ +..-+...++|.+
T Consensus 275 LfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg---------------~l~~IgaTt~~e--------y~~~ie~D~aL~r 331 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEGAIDAANILKPALARG---------------ELQCIGATTLDE--------YRKHIEKDPALER 331 (821)
T ss_pred EEEecHHHHhcCCCCCCcccHHHHhHHHHhCC---------------CcEEEEeCCHHH--------HHHHHhcCHHHHh
Confidence 999999865421 233444444433 367789999863 3333567899999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~ 585 (621)
||.. +..+.|+.++...|.+.+........ .-.++.+.+......+.++ .-.+++.|.+.|-+.....|-
T Consensus 332 Rf~~--I~v~ep~~~e~~aILr~l~~~~e~~~-----~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 332 RFQP--VYVGEPSVEETIEILFGLRSRYEKHH-----NLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred cceE--EecCCCCHHHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHh
Confidence 9964 35566888888888887765432111 1127899999999999877 556899999988887665544
No 125
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.65 E-value=8.1e-07 Score=91.68 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=88.6
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
.||+||||.+.++-+.-+.|+.|||+--- -.||.|+|....+-... ++..-..+|..||||. ||
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGT-d~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGT-DIESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC--------------cEEEEEcCCceeeeccc-CCcCCCCCCHhhhhhe-eE
Confidence 48999999999999999999999997432 24667778642211111 1334457999999998 55
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL-CKGKNPTVPSSLTEHIVKAYTELRKVARNSRD 592 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~-ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~ 592 (621)
.-..+ ++.+++|.+|.- |+.....++++|.++|.+.
T Consensus 356 I~t~p------------------------------y~~~EireIi~iRa~ee~i~l~~~Ale~L~~i------------- 392 (450)
T COG1224 356 ISTRP------------------------------YSREEIREIIRIRAKEEDIELSDDALEYLTDI------------- 392 (450)
T ss_pred EecCC------------------------------CCHHHHHHHHHHhhhhhccccCHHHHHHHHhh-------------
Confidence 44433 334445555432 3333788999999998864
Q ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 593 MSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 593 ~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
....|.|-...|+.-|.-.|+.+++..|+
T Consensus 393 g~etSLRYa~qLL~pa~iiA~~rg~~~V~ 421 (450)
T COG1224 393 GEETSLRYAVQLLTPASIIAKRRGSKRVE 421 (450)
T ss_pred chhhhHHHHHHhccHHHHHHHHhCCCeee
Confidence 12247888888888888889888887663
No 126
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=2.1e-07 Score=105.58 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=86.2
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCc--------ccc-ceEEEeecCcc--cc--e--eeec--cceeecCC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSS--------GVG-LTAAVMKDPIT--NE--M--VLEG--GALVLADQ 434 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s--------~~g-Lta~~~~~~~~--g~--~--~l~~--GalvlAd~ 434 (621)
+||+|++|||||++++.+++.+.......+.... ..| .......+..+ |. . .++. .....+..
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~ 120 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCc
Confidence 4899999999999999999986431110000000 000 00001111110 00 0 0110 00112345
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
.|++|||+++|+....++|+..||+- +..+.+|.++|... .|+++|+||| ..
T Consensus 121 KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------KIp~TIrSRC--q~ 172 (830)
T PRK07003 121 KVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKFILATTDPQ-------------KIPVTVLSRC--LQ 172 (830)
T ss_pred eEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEEEEEECChh-------------hccchhhhhe--EE
Confidence 79999999999999999999999972 22344444554331 5889999999 34
Q ss_pred EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
+-+...+.++-....++++... .-.++.+.|+.+...+.
T Consensus 173 f~Fk~Ls~eeIv~~L~~Il~~E---------gI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 173 FNLKQMPAGHIVSHLERILGEE---------RIAFEPQALRLLARAAQ 211 (830)
T ss_pred EecCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence 4445555555555555554321 12456666766666654
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.64 E-value=1.8e-07 Score=98.52 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=77.4
Q ss_pred cEEE-eCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Ch
Q psy11213 371 NICL-MGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PD 447 (621)
Q Consensus 371 ~vLL-~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~ 447 (621)
|++| +|+||+|||++++++++.....++ ..... .... ..++. -.++. .... ..++.++++|||++.+ ..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~----~i~~~-l~~~~-~~~~-~~~~~~vliiDe~d~l~~~ 115 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRID----FVRNR-LTRFA-STVS-LTGGGKVIIIDEFDRLGLA 115 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHH----HHHHH-HHHHH-Hhhc-ccCCCeEEEEECcccccCH
Confidence 5555 899999999999999987543221 11111 0000 00000 00010 0000 1245789999999999 66
Q ss_pred hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHH
Q psy11213 448 ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK 527 (621)
Q Consensus 448 ~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ 527 (621)
+.+..|...|+.. +..+.+|.++|... .+.++|.|||. .+..+.|+.+....
T Consensus 116 ~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~-------------~l~~~l~sR~~--~i~~~~p~~~~~~~ 167 (316)
T PHA02544 116 DAQRHLRSFMEAY-------------SKNCSFIITANNKN-------------GIIEPLRSRCR--VIDFGVPTKEEQIE 167 (316)
T ss_pred HHHHHHHHHHHhc-------------CCCceEEEEcCChh-------------hchHHHHhhce--EEEeCCCCHHHHHH
Confidence 6677787778752 34567888888652 58899999994 34556777766665
Q ss_pred HHHHHH
Q psy11213 528 LAQHIT 533 (621)
Q Consensus 528 ia~~il 533 (621)
+++.++
T Consensus 168 il~~~~ 173 (316)
T PHA02544 168 MMKQMI 173 (316)
T ss_pred HHHHHH
Confidence 655443
No 128
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.63 E-value=2e-07 Score=93.60 Aligned_cols=184 Identities=21% Similarity=0.300 Sum_probs=105.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
.-.+.||+|||||..++.+++.+.+.+++-.- ......+. .+-.|+. ..|..+|+||||+++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~------------ril~G~~--~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS------------RILKGLA--QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH------------HHHHHHH--HHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH------------HHHHHHh--hcCchhhhhhhhhhhHH
Confidence 45689999999999999999999987765322 11110000 0011211 13667899999999988
Q ss_pred hhhhhHh-------hhcc--eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC
Q psy11213 449 DRTAIHE-------VMEQ--QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK 519 (621)
Q Consensus 449 ~~~~L~e-------ame~--q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~ 519 (621)
..+.+.+ ++.. ..+.+ .|....++..+.+..|+||.+ ....+||+.|..-| .-+....
T Consensus 100 vLS~i~~~i~~i~~al~~~~~~~~~--~g~~i~l~~~~~iFiT~np~y---------~gr~~LP~nLk~lF--Rpvam~~ 166 (231)
T PF12774_consen 100 VLSVISQQIQSIQDALRAKQKSFTL--EGQEIKLNPNCGIFITMNPGY---------AGRSELPENLKALF--RPVAMMV 166 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCTSSEEEE--TTCEEE--TT-EEEEEE-B-C---------CCC--S-HHHCTTE--EEEE--S
T ss_pred HHHHHHHHHHHHHHhhccccccccc--CCCEEEEccceeEEEeecccc---------CCcccCCHhHHHHh--heeEEeC
Confidence 8765543 4433 34444 688899999999999999973 33457999998888 4555555
Q ss_pred CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213 520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599 (621)
Q Consensus 520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R 599 (621)
||.. .|++-.+-.+ .-.=+....+.+...|..+++.-.. ......+.|
T Consensus 167 PD~~---~I~ei~L~s~----------------------------GF~~a~~La~kl~~l~~l~~~~lS~-q~hydfgLR 214 (231)
T PF12774_consen 167 PDLS---LIAEILLLSQ----------------------------GFKDAKSLAKKLVSLFQLCKEQLSK-QDHYDFGLR 214 (231)
T ss_dssp --HH---HHHHHHHHCC----------------------------CTSSHHHHHHHHHHHHHHHHHCS-S-STT---SHH
T ss_pred CCHH---HHHHHHHHHc----------------------------CchhHHHHHHHHHHHHHHHHHhhcc-CccccccHH
Confidence 5533 2333333211 1122345667778877666654322 234458899
Q ss_pred HHHHHHHHHHHHHH
Q psy11213 600 NLLAILRLSTALAR 613 (621)
Q Consensus 600 ~leslirla~A~Ak 613 (621)
.+.+++++|...-|
T Consensus 215 alk~vl~~a~~~kr 228 (231)
T PF12774_consen 215 ALKSVLRMAGSLKR 228 (231)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999977644
No 129
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.5e-07 Score=105.73 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=82.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--cc--ce--eeecc--cee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TN--EM--VLEGG--ALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g--~~--~l~~G--alv 430 (621)
.+||+||||+|||++++.+|+.+....-. +|.-. +...+. ..+.. .+ .+ .+... .-.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi---EIDAAs~~~VddIReli~~~~y~P~ 115 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI---EIDAASRTKVEDTRELLDNVPYAPT 115 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE---EecccccCCHHHHHHHHHHHhhhhh
Confidence 56999999999999999999985421100 01000 000010 01110 01 00 00000 001
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.+...|++|||+++|+....++|+..||+- +..+. |++|.++. .++.+++||
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~FILaTtd~~--------------kIp~TIlSR 168 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVKFLFATTDPQ--------------KLPITVISR 168 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcEEEEEECChH--------------hhhHHHHHh
Confidence 123469999999999999999999999862 22233 44444443 478899999
Q ss_pred ccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
+ ..+-+..++.+.-...+++++... ...++.+.+..++..+
T Consensus 169 C--q~feFkpLs~eEI~k~L~~Il~kE---------gI~id~eAL~~IA~~S 209 (702)
T PRK14960 169 C--LQFTLRPLAVDEITKHLGAILEKE---------QIAADQDAIWQIAESA 209 (702)
T ss_pred h--heeeccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 9 344444555555555555554321 1235555555555544
No 130
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=4.7e-07 Score=97.38 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=84.6
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccE-Ee---cCCCCc----cccceEEE-eecCcc--c-----ce--eeeccceeecC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQ-YT---TGRGSS----GVGLTAAV-MKDPIT--N-----EM--VLEGGALVLAD 433 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~-~~---~g~~~s----~~gLta~~-~~~~~~--g-----~~--~l~~GalvlAd 433 (621)
+||.||||+|||++++.+++.+.... +. +|.-.+ ..|....+ ..++.+ + +. .+...+ ..++
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p-~~~~ 119 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP-SKSR 119 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc-ccCC
Confidence 69999999999999999998864211 00 010000 00000000 001100 0 00 000000 1234
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++|||+++|+....++|+..||+- +..+. |++|.|+. .+++++.||+
T Consensus 120 ~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~fIl~t~~~~--------------~l~~tI~SRc-- 170 (363)
T PRK14961 120 FKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIKFILATTDVE--------------KIPKTILSRC-- 170 (363)
T ss_pred ceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEcCChH--------------hhhHHHHhhc--
Confidence 569999999999999999999999862 22333 44443432 4889999999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..+....++.++-...+.+++... ...++.+.+..++..+
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~---------g~~i~~~al~~ia~~s 210 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKE---------SIDTDEYALKLIAYHA 210 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 555666677666666666655421 1235556665555544
No 131
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.9e-07 Score=103.78 Aligned_cols=135 Identities=20% Similarity=0.218 Sum_probs=78.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCcccc-------ce----EE-EeecCc--ccce----ee---eccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVG-------LT----AA-VMKDPI--TNEM----VL---EGGA 428 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~g-------Lt----a~-~~~~~~--~g~~----~l---~~Ga 428 (621)
++||.||||||||++++.+++.+....... +......| +. .- ...+.. +|.- .+ +..+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P 124 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP 124 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999864321111 10000000 00 00 001110 1100 00 0011
Q ss_pred eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
..++..|++|||++.++....++|+..||+. +..+.+|.++|... .+++++.|
T Consensus 125 -~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTte~~-------------kI~~tI~S 177 (507)
T PRK06645 125 -LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PPHIIFIFATTEVQ-------------KIPATIIS 177 (507)
T ss_pred -ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeCChH-------------HhhHHHHh
Confidence 2346789999999999999999999999852 33444444444321 48899999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|+ ..+-...++.++-....++++.
T Consensus 178 Rc--~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 178 RC--QRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred cc--eEEEccCCCHHHHHHHHHHHHH
Confidence 99 3444555666655555555553
No 132
>PRK06620 hypothetical protein; Validated
Probab=98.61 E-value=9.9e-07 Score=87.71 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=87.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
.++|+||||+|||+|++++++... ..+.+.... . . + ......++||||++.......
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~~~~~-----------~--~-~--------~~~~~d~lliDdi~~~~~~~l 102 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN-AYIIKDIFF-----------N--E-E--------ILEKYNAFIIEDIENWQEPAL 102 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC-CEEcchhhh-----------c--h-h--------HHhcCCEEEEeccccchHHHH
Confidence 699999999999999999887743 222221000 0 0 0 012346899999997643222
Q ss_pred hhhHhh-hcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChHHHHHH
Q psy11213 451 TAIHEV-MEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRDNDLKL 528 (621)
Q Consensus 451 ~~L~ea-me~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~~d~~i 528 (621)
-.++.. +|.+. ..++++..+.. .+.+ +.|.||+. ..++-...|+.+....+
T Consensus 103 f~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 103 LHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDELIKIL 155 (214)
T ss_pred HHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHHHHHHH
Confidence 222222 24332 23444443331 1357 89999995 12444555555543333
Q ss_pred HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHH
Q psy11213 529 AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLS 608 (621)
Q Consensus 529 a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla 608 (621)
.+... +..+..+++++.++|++.. .-+.|.++.++...
T Consensus 156 l~k~~----------------------------~~~~l~l~~ev~~~L~~~~--------------~~d~r~l~~~l~~l 193 (214)
T PRK06620 156 IFKHF----------------------------SISSVTISRQIIDFLLVNL--------------PREYSKIIEILENI 193 (214)
T ss_pred HHHHH----------------------------HHcCCCCCHHHHHHHHHHc--------------cCCHHHHHHHHHHH
Confidence 33221 1124678999999888742 12578888777776
Q ss_pred HHHHHhcCC
Q psy11213 609 TALARLRLC 617 (621)
Q Consensus 609 ~A~Akl~lr 617 (621)
.+.|....+
T Consensus 194 ~~~~~~~~~ 202 (214)
T PRK06620 194 NYFALISKR 202 (214)
T ss_pred HHHHHHcCC
Confidence 655555443
No 133
>KOG0652|consensus
Probab=98.60 E-value=3.8e-08 Score=97.13 Aligned_cols=130 Identities=24% Similarity=0.327 Sum_probs=81.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecC---CCeeEecCCCCCC-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLAD---QGICCIDEFDKLP- 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd---~gi~~IDEidk~~- 446 (621)
.+|++||||||||.++|++|....... ..-.++. |....+- .|. .+.-.++.+|. ..|+||||+|.+.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTF-LKLAgPQ---LVQMfIG---dGA-kLVRDAFaLAKEkaP~IIFIDElDAIGt 278 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATF-LKLAGPQ---LVQMFIG---DGA-KLVRDAFALAKEKAPTIIFIDELDAIGT 278 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchH-HHhcchH---HHhhhhc---chH-HHHHHHHHHhhccCCeEEEEechhhhcc
Confidence 799999999999999999987632211 1000111 1100000 111 12222333442 4799999998753
Q ss_pred ----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 447 ----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 447 ----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
.+.|..++|.+.|- .| .+-+.+.-||||+|... -|.|+||+ |.| .-
T Consensus 279 KRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlRSGRLD-RK 336 (424)
T KOG0652|consen 279 KRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLRSGRLD-RK 336 (424)
T ss_pred ccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhhccccc-cc
Confidence 34567888988763 23 23467789999999873 37888886 787 55
Q ss_pred EecCCCChHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~ 530 (621)
+-++.|+++...+|.+
T Consensus 337 IEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQ 352 (424)
T ss_pred ccCCCCChHHHHHHHH
Confidence 6677888887766654
No 134
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.59 E-value=2.2e-07 Score=93.80 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+++|+||||+|||+|++++++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999887643
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.58 E-value=2.1e-07 Score=110.45 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=109.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe---cCCCC---ccccceEEEeecCcccceeee-cccee---ec-CCCeeEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT---TGRGS---SGVGLTAAVMKDPITNEMVLE-GGALV---LA-DQGICCI 439 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~---~g~~~---s~~gLta~~~~~~~~g~~~l~-~Galv---lA-d~gi~~I 439 (621)
|++|+||||+|||++++.++..+...... .+... ....+.+... ..|+|.-. ...+- .. .+.|+||
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~---~~g~~e~~l~~~l~~~~~~~~~~ILfI 272 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK---YRGEFEERLKAVLNEVTKSEGQIILFI 272 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch---hhhhHHHHHHHHHHHHHhcCCCeEEEe
Confidence 89999999999999999998875432100 00000 0000111000 01222100 00010 11 2469999
Q ss_pred cCCCCCCh--------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 440 DEFDKLPD--------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 440 DEidk~~~--------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
||++.+.. +..+.|..+++. .+..+|||+|+.+ +...++++++|.+||.
T Consensus 273 DEih~l~~~g~~~~~~d~~~~Lk~~l~~---------------g~i~~IgaTt~~e--------~r~~~~~d~al~rRf~ 329 (852)
T TIGR03346 273 DELHTLVGAGKAEGAMDAGNMLKPALAR---------------GELHCIGATTLDE--------YRKYIEKDAALERRFQ 329 (852)
T ss_pred ccHHHhhcCCCCcchhHHHHHhchhhhc---------------CceEEEEeCcHHH--------HHHHhhcCHHHHhcCC
Confidence 99998753 122333333322 2467889998763 3333578999999997
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~ 585 (621)
. +.+..|+.+.-..|.+.+...... ...-.++.+.+...+..+.++ .-.+++.|.+.|-+.-...|-
T Consensus 330 ~--i~v~~p~~~~~~~iL~~~~~~~e~-----~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 330 P--VFVDEPTVEDTISILRGLKERYEV-----HHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred E--EEeCCCCHHHHHHHHHHHHHHhcc-----ccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence 4 456788888888877766443211 122347788899999888877 667999999988877654443
No 136
>KOG0731|consensus
Probab=98.57 E-value=2.5e-07 Score=105.00 Aligned_cols=125 Identities=30% Similarity=0.363 Sum_probs=81.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCC--ccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGS--SGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.+||+||||||||.|||++|..+.-.+++. |... .-+|.-++.+++- +..| -..|+||||||.
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l-----------f~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL-----------FPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH-----------HHHhhccCCeEEEeccccc
Confidence 699999999999999999999987666542 2211 1111212222221 1111 147999999997
Q ss_pred CChhh---------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213 445 LPDAD---------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS- 508 (621)
Q Consensus 445 ~~~~~---------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls- 508 (621)
....- .+.|+--|+ |-.++ ..+.++||+|... -|++||++
T Consensus 415 ~~~~r~G~~~~~~~~e~e~tlnQll~emD---------gf~~~--~~vi~~a~tnr~d-------------~ld~allrp 470 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDEREQTLNQLLVEMD---------GFETS--KGVIVLAATNRPD-------------ILDPALLRP 470 (774)
T ss_pred ccccccccccCCCChHHHHHHHHHHHHhc---------CCcCC--CcEEEEeccCCcc-------------ccCHHhcCC
Confidence 54321 123333332 33332 4588999999874 48999997
Q ss_pred -cccEEEEecCCCChHHHHHHHHH
Q psy11213 509 -RFDLLWLIQDKPDRDNDLKLAQH 531 (621)
Q Consensus 509 -RFDli~~~~d~~d~~~d~~ia~~ 531 (621)
||| .-+..|.|+......|.+-
T Consensus 471 GRfd-r~i~i~~p~~~~r~~i~~~ 493 (774)
T KOG0731|consen 471 GRFD-RQIQIDLPDVKGRASILKV 493 (774)
T ss_pred Cccc-cceeccCCchhhhHHHHHH
Confidence 999 7777899999888877663
No 137
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=3.1e-07 Score=104.27 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=75.7
Q ss_pred c-EEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--cc--c-eeeeccce---
Q psy11213 371 N-ICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TN--E-MVLEGGAL--- 429 (621)
Q Consensus 371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g--~-~~l~~Gal--- 429 (621)
| +||.|+||+|||++++.+++.+...... +|.-. +...+. ..+.. .+ . ..+....-
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i---eidaas~~~VddiR~li~~~~~~p 115 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI---EIDAASRTKVEDTRELLDNVQYAP 115 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce---eecccccCCHHHHHHHHHHHHhhh
Confidence 5 5899999999999999999986542110 11000 000010 01111 01 0 00000000
Q ss_pred eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
......|++|||+++|+....++|+..||+- |..+ .|++|+++. .|+++++|
T Consensus 116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v~FIL~Tt~~~--------------kLl~TI~S 168 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ--------------KLPVTILS 168 (647)
T ss_pred hcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCeEEEEecCCcc--------------ccchHHHh
Confidence 1123459999999999999999999999972 2223 445555554 58999999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|+ ..|. +..++.++-....++++
T Consensus 169 RC-~~~~-f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 169 RC-LQFH-LKALDVEQIRQQLEHIL 191 (647)
T ss_pred hh-eEee-CCCCCHHHHHHHHHHHH
Confidence 99 3444 45555555444555554
No 138
>KOG0727|consensus
Probab=98.55 E-value=3e-07 Score=90.54 Aligned_cols=126 Identities=27% Similarity=0.346 Sum_probs=77.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccc------eeec---CCCeeEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGA------LVLA---DQGICCID 440 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Ga------lvlA---d~gi~~ID 440 (621)
.|||+||||||||+|++++|+....+... .|. .. .. . .+-.|+ +-+| ...|+|||
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgs--ef--------vq----k-ylgegprmvrdvfrlakenapsiifid 255 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS--EF--------VQ----K-YLGEGPRMVRDVFRLAKENAPSIIFID 255 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccH--HH--------HH----H-HhccCcHHHHHHHHHHhccCCcEEEee
Confidence 69999999999999999999873322211 110 00 00 0 011111 1122 24799999
Q ss_pred CCCCC-----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213 441 EFDKL-----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS- 508 (621)
Q Consensus 441 Eidk~-----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls- 508 (621)
|+|.+ ..+.|..|+|.+.|- .|-.. .+.+-||.|+|... .|.++||+
T Consensus 256 eidaiatkrfdaqtgadrevqril~ellnqm------dgfdq--~~nvkvimatnrad-------------tldpallrp 314 (408)
T KOG0727|consen 256 EIDAIATKRFDAQTGADREVQRILIELLNQM------DGFDQ--TTNVKVIMATNRAD-------------TLDPALLRP 314 (408)
T ss_pred hhhhHhhhhccccccccHHHHHHHHHHHHhc------cCcCc--ccceEEEEecCccc-------------ccCHhhcCC
Confidence 99874 344567888887763 23222 34467999999863 58888886
Q ss_pred -cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 -RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 -RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|.| .-+-.+.||.-+.+-+-..+.
T Consensus 315 grld-rkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 315 GRLD-RKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cccc-ccccCCCCchhhhhhhHHhhh
Confidence 777 445556777766665555443
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=4.5e-07 Score=101.24 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=72.5
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEe----cCC-----------CCccccceEEEeecCc-ccceeeec--cceeecC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYT----TGR-----------GSSGVGLTAAVMKDPI-TNEMVLEG--GALVLAD 433 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~-----------~~s~~gLta~~~~~~~-~g~~~l~~--GalvlAd 433 (621)
+||+||||||||++++.+++.+...... +|. ...-..+.++....-. ..+. ++. -.-..+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l-~~~~~~~p~~~~ 119 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTREL-LDNIPYAPTKGR 119 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHH-HHHHhhccccCC
Confidence 6999999999999999999986432110 110 0000001111000000 0000 000 0001223
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++|||+++|+.+..++|+..||+- |..+. |++|.+|. .++++++||+ .
T Consensus 120 ~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~fIlattd~~--------------kl~~tI~SRc-~ 171 (509)
T PRK14958 120 FKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKFILATTDHH--------------KLPVTVLSRC-L 171 (509)
T ss_pred cEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEEEEEECChH--------------hchHHHHHHh-h
Confidence 469999999999999999999999962 33343 44444443 5788899999 3
Q ss_pred EEEecCCCChHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il 533 (621)
.|- ....+.+.-....++++
T Consensus 172 ~~~-f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 172 QFH-LAQLPPLQIAAHCQHLL 191 (509)
T ss_pred hhh-cCCCCHHHHHHHHHHHH
Confidence 333 33344444334444444
No 140
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3e-07 Score=102.83 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=74.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecC--ccc--c--eeeec--ccee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDP--ITN--E--MVLEG--GALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~--~~g--~--~~l~~--Galv 430 (621)
.+||+||||+|||++++.+++.+...... +|.- .+...+.. .+. ..| + -.++. ..-.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie---idaas~~gvd~ir~ii~~~~~~p~ 116 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE---IDAASRTGVEETKEILDNIQYMPS 116 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE---eecccccCHHHHHHHHHHHHhhhh
Confidence 37899999999999999999875421100 0000 00001110 010 000 0 00000 0012
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.++..|++|||+++|+.+.+++|+..||+. |..+ .|++|+++. .++++++||
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~fIL~Ttd~~--------------kil~tI~SR 169 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKFILATTDYH--------------KIPVTILSR 169 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceEEEEECChh--------------hhhhhHHHh
Confidence 335679999999999999999999999973 2223 345555543 577889999
Q ss_pred ccEEEEecCCCChHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il 533 (621)
+ ..+-+..++.+.-...+.+++
T Consensus 170 c--~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 170 C--IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred e--eeEEeCCCCHHHHHHHHHHHH
Confidence 9 344444555554444444444
No 141
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.7e-07 Score=105.04 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++|||+|+|+....++|+..||+- +.++. |++|.|+. .|+++++||+
T Consensus 125 ~KViIIDEah~Ls~~AaNALLKTLEEP-------------P~~v~FILaTtep~--------------kLlpTIrSRC-- 175 (700)
T PRK12323 125 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC-- 175 (700)
T ss_pred ceEEEEEChHhcCHHHHHHHHHhhccC-------------CCCceEEEEeCChH--------------hhhhHHHHHH--
Confidence 459999999999999999999999872 23334 44454444 5889999999
Q ss_pred EEEecCCCChHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il 533 (621)
..+.+..++.+.-.+..++++
T Consensus 176 q~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred HhcccCCCChHHHHHHHHHHH
Confidence 344444555554444444554
No 142
>KOG0740|consensus
Probab=98.54 E-value=2.4e-08 Score=106.86 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=91.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~ 447 (621)
.+||.||||+|||+|++++|..+.-..|. -|+..|+....- .++..+. ..+-.| .-+|+||||+|++..
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~atff~----iSassLtsK~~G---e~eK~vr-alf~vAr~~qPsvifidEidslls 259 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGATFFN----ISASSLTSKYVG---ESEKLVR-ALFKVARSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcceEee----ccHHHhhhhccC---hHHHHHH-HHHHHHHhcCCeEEEechhHHHHh
Confidence 68999999999999999999986444332 122223322111 1111000 011111 358999999998543
Q ss_pred hhhhhhHhhhc--ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 448 ADRTAIHEVME--QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 448 ~~~~~L~eame--~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
+-....||.=. .-+.-+...|....-+.|..|+||+|-.+ .+++++++|| .-++.+..||.+..
T Consensus 260 ~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~-------------e~Dea~~Rrf-~kr~yiplPd~etr 325 (428)
T KOG0740|consen 260 KRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW-------------ELDEAARRRF-VKRLYIPLPDYETR 325 (428)
T ss_pred hcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch-------------HHHHHHHHHh-hceeeecCCCHHHH
Confidence 32222222110 00111223455555567899999999874 6899999999 68888999999999
Q ss_pred HHHHHHHHhhh
Q psy11213 526 LKLAQHITYVH 536 (621)
Q Consensus 526 ~~ia~~il~~~ 536 (621)
..+..+++.-+
T Consensus 326 ~~~~~~ll~~~ 336 (428)
T KOG0740|consen 326 SLLWKQLLKEQ 336 (428)
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 143
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.7e-07 Score=100.76 Aligned_cols=130 Identities=23% Similarity=0.271 Sum_probs=73.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE----EecCC--------CCccccceEEEeecCc--ccc--e--eeec-c-cee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGR--------GSSGVGLTAAVMKDPI--TNE--M--VLEG-G-ALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~--------~~s~~gLta~~~~~~~--~g~--~--~l~~-G-alv 430 (621)
++||.||||+|||++++.+|+.+.-.. --+|. ..+...+. ..+.. .|. . .++. . .-+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~---eidaas~~~vddIR~Iie~~~~~P~ 113 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI---EIDAASNTSVDDIKVILENSCYLPI 113 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE---EEecccCCCHHHHHHHHHHHHhccc
Confidence 699999999999999999998642110 00010 00000000 01110 110 0 0000 0 012
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.+...|++|||+++++.+..++|+..||+- |..+ .|++|.++. .++.++.||
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v~fIlatte~~--------------Kl~~tI~SR 166 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHVKFILATTEVK--------------KIPVTIISR 166 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChH--------------HHHHHHHHh
Confidence 346679999999999999999999999962 2223 344444433 488999999
Q ss_pred ccEEEEecCCCChHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~i 532 (621)
+ ..+-...++.+.-.....++
T Consensus 167 c--~~~~f~~l~~~el~~~L~~i 187 (491)
T PRK14964 167 C--QRFDLQKIPTDKLVEHLVDI 187 (491)
T ss_pred h--eeeecccccHHHHHHHHHHH
Confidence 9 33444444444444444443
No 144
>KOG0989|consensus
Probab=98.51 E-value=3.2e-07 Score=93.06 Aligned_cols=136 Identities=20% Similarity=0.249 Sum_probs=77.6
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc-cEEecCCC---Ccc-ccceEEEeecCcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR-SQYTTGRG---SSG-VGLTAAVMKDPIT 419 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr-~~~~~g~~---~s~-~gLta~~~~~~~~ 419 (621)
||+..|..+..++..+ +..|.|++||||||||..++++++.+.. ..+-+|.- .|. -|.. +.+...
T Consensus 40 gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Ki- 109 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKI- 109 (346)
T ss_pred chHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhh-
Confidence 5655554444444432 2459999999999999999998877432 22222211 111 1111 111110
Q ss_pred ccee----eeccc--eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCC
Q psy11213 420 NEMV----LEGGA--LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPK 493 (621)
Q Consensus 420 g~~~----l~~Ga--lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~ 493 (621)
..|. ...+. -+...-.|++|||.|.|..+.+++|...||.-. -..||.+| ||...
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-----------~~trFiLI--cnyls------ 170 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-----------RTTRFILI--CNYLS------ 170 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-----------cceEEEEE--cCChh------
Confidence 0000 00000 111122699999999999999999999999621 12234444 46552
Q ss_pred CCcccccCCCHhHhccccEEEEec
Q psy11213 494 RSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 494 ~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
.|+.++.||+- -|...
T Consensus 171 -------rii~pi~SRC~-KfrFk 186 (346)
T KOG0989|consen 171 -------RIIRPLVSRCQ-KFRFK 186 (346)
T ss_pred -------hCChHHHhhHH-HhcCC
Confidence 69999999983 44443
No 145
>KOG0739|consensus
Probab=98.51 E-value=1.1e-07 Score=95.78 Aligned_cols=124 Identities=28% Similarity=0.377 Sum_probs=74.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeee-----ccceeec---CCCeeEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLE-----GGALVLA---DQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~-----~GalvlA---d~gi~~IDE 441 (621)
-.|||+||||||||.|++++|..+....|... +|. |. ..|.=+ ...+-+| ...|+||||
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS--SSD--Lv---------SKWmGESEkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVS--SSD--LV---------SKWMGESEKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEee--hHH--HH---------HHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 37999999999999999999998763333211 111 21 122211 1122233 248999999
Q ss_pred CCCCC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 442 FDKLP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 442 idk~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
||.+- +..|..--|.+-| . .|. -.-+..+.|++|+|..+ -|+.++.+||+ -
T Consensus 234 iDslcg~r~enEseasRRIKTEfLVQ----M--qGV-G~d~~gvLVLgATNiPw-------------~LDsAIRRRFe-k 292 (439)
T KOG0739|consen 234 IDSLCGSRSENESEASRRIKTEFLVQ----M--QGV-GNDNDGVLVLGATNIPW-------------VLDSAIRRRFE-K 292 (439)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHh----h--hcc-ccCCCceEEEecCCCch-------------hHHHHHHHHhh-c
Confidence 99753 2222222222221 0 011 11234588999999885 68999999997 6
Q ss_pred EEecCCCChHHHHH
Q psy11213 514 WLIQDKPDRDNDLK 527 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ 527 (621)
.+.++.|+......
T Consensus 293 RIYIPLPe~~AR~~ 306 (439)
T KOG0739|consen 293 RIYIPLPEAHARAR 306 (439)
T ss_pred ceeccCCcHHHhhh
Confidence 66667776654443
No 146
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=3.4e-07 Score=102.61 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=75.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCCCc--------cccceEEEeecCcc----c---cee--eeccce
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGSS--------GVGLTAAVMKDPIT----N---EMV--LEGGAL 429 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~s--------~~gLta~~~~~~~~----g---~~~--l~~Gal 429 (621)
.+|+.||||+|||++|+.+|+.+..... .+|.-.+ ...+. ..+..+ + +.. ....+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii---eIdaas~igVd~IReIi~~~~~~P- 115 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV---ELDAASNNGVDEIRNIIDNINYLP- 115 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE---EeccccccCHHHHHHHHHHHHhch-
Confidence 4899999999999999999998532111 1111000 00000 001100 0 000 00011
Q ss_pred eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
..++.+|++|||++.|+.+.+++|+..||+- |..+. |++|.++. .|+++++|
T Consensus 116 ~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~tvfIL~Tt~~~--------------KLl~TI~S 168 (605)
T PRK05896 116 TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKHVVFIFATTEFQ--------------KIPLTIIS 168 (605)
T ss_pred hhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CCcEEEEEECCChH--------------hhhHHHHh
Confidence 2346789999999999999999999999962 22233 44454443 58899999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|+. .+-...++.+.-......++
T Consensus 169 Rcq--~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 169 RCQ--RYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hhh--hcccCCCCHHHHHHHHHHHH
Confidence 993 44445555555444444444
No 147
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=1.4e-06 Score=92.41 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=58.6
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeec-CCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA-NPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~-Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
++.++++|||++.+.++.+..|+..|++.. ..+.+|.++ |+. .+.++|.+|+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~--------------~~~~~L~sr~ 176 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYS-------------RTCRFIIATRQPS--------------KLIPPIRSRC 176 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------------CCCeEEEEeCChh--------------hCchhhcCCc
Confidence 456899999999999988999999988531 123344444 443 3567899998
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..+....++.++-..+.+.+.... ...++.+.+..++.++
T Consensus 177 --~~v~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 177 --LPLFFRAPTDDELVDVLESIAEAE---------GVDYDDDGLELIAYYA 216 (337)
T ss_pred --eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 344455666655555555554321 1235666666666654
No 148
>KOG0742|consensus
Probab=98.49 E-value=3.9e-07 Score=95.20 Aligned_cols=135 Identities=23% Similarity=0.256 Sum_probs=84.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE--EecCCCCccccceEE-EeecCcccceeeeccceeecCCC-eeEecCCCC--
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ--YTTGRGSSGVGLTAA-VMKDPITNEMVLEGGALVLADQG-ICCIDEFDK-- 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~--~~~g~~~s~~gLta~-~~~~~~~g~~~l~~GalvlAd~g-i~~IDEidk-- 444 (621)
|||++||||||||+++|-++..+.-.. .|-|.. +.|-+- |..-..--.|.. .+.+| ++||||.|-
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV---APlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV---APLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFL 456 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc---cccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHH
Confidence 999999999999999999998854322 121111 001100 000000011221 11223 679999975
Q ss_pred -------CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 445 -------LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 445 -------~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
|+++.|++|...+=. .|.. .-++.++-|+|..+ +|+.+.-|||| -++.+
T Consensus 457 ceRnktymSEaqRsaLNAlLfR-------TGdq---SrdivLvlAtNrpg-------------dlDsAV~DRid-e~veF 512 (630)
T KOG0742|consen 457 CERNKTYMSEAQRSALNALLFR-------TGDQ---SRDIVLVLATNRPG-------------DLDSAVNDRID-EVVEF 512 (630)
T ss_pred HHhchhhhcHHHHHHHHHHHHH-------hccc---ccceEEEeccCCcc-------------chhHHHHhhhh-heeec
Confidence 888888887766521 1111 11245556667653 68999999999 66777
Q ss_pred CCCChHHHHHHHHHHHhhhcc
Q psy11213 518 DKPDRDNDLKLAQHITYVHKH 538 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~~~~~ 538 (621)
+.|.+++..+|....++.+..
T Consensus 513 pLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 513 PLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred CCCChHHHHHHHHHHHHHHhc
Confidence 999999999999988876653
No 149
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1e-06 Score=99.92 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=83.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe----cCCCC--------ccccceEEEeecCc--ccc----eeeec--ccee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT----TGRGS--------SGVGLTAAVMKDPI--TNE----MVLEG--GALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~~--------s~~gLta~~~~~~~--~g~----~~l~~--Galv 430 (621)
.+||+|+||+|||++++.+++.+...... +|.-. ....+ ...+.. .|. -.++. -.-.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv---lEidaAs~~gVd~IRelle~a~~~P~ 116 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL---LEIDAASNTGIDNIREVLENAQYAPT 116 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce---EEEeccccCCHHHHHHHHHHHHhhhh
Confidence 47999999999999999999975321111 11000 00001 001110 110 00110 0002
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.+...|++|||+++|+....++|+..||+. +..+.+|.++|-.. .++.+++||+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~fILaTtd~~-------------kL~~TIrSRC 170 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPH-------------KVPVTVLSRC 170 (709)
T ss_pred hCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccchHHHHHH
Confidence 235579999999999999999999999862 23344444444331 5889999999
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..+-+..++.++-.....+++... ...++.+.++.++..+
T Consensus 171 --~~f~f~~Ls~eeI~~~L~~Il~kE---------gi~id~eAL~~Ia~~A 210 (709)
T PRK08691 171 --LQFVLRNMTAQQVADHLAHVLDSE---------KIAYEPPALQLLGRAA 210 (709)
T ss_pred --hhhhcCCCCHHHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHh
Confidence 333334455555455555554321 1234555555555554
No 150
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-06 Score=97.55 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=120.2
Q ss_pred ecCCCCccccceEEEeecCccc------ceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecC-----
Q psy11213 399 TTGRGSSGVGLTAAVMKDPITN------EMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA----- 467 (621)
Q Consensus 399 ~~g~~~s~~gLta~~~~~~~~g------~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~----- 467 (621)
....+.....|.|++..++..| .-.++||++..||||||+|||++.+....+..++.+|.++...+.-.
T Consensus 185 v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~ 264 (647)
T COG1067 185 VFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSS 264 (647)
T ss_pred EecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCcccc
Confidence 3344455555999988887655 45689999999999999999999999999999999998765443211
Q ss_pred Ce---EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCC-C-ChHHHHHHHHHHHhhhccCCCC
Q psy11213 468 GI---MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDK-P-DRDNDLKLAQHITYVHKHSRQP 542 (621)
Q Consensus 468 gi---~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~-~-d~~~d~~ia~~il~~~~~~~~~ 542 (621)
|. .-..|+++.++++.|+.. +..-..+.+.++.=|+....+.+. | .++...++++++...
T Consensus 265 ~~~v~~e~vP~d~klI~~Gn~~~--------l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~------- 329 (647)
T COG1067 265 GAPVRPESVPLDLKLILAGNRED--------LEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQE------- 329 (647)
T ss_pred CcccCCCCcccceEEEeeCCHHH--------HHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHH-------
Confidence 11 224678899999999862 222223333333334332333332 2 223333333333221
Q ss_pred CCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 543 PTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 543 ~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
.++. .-|.++..|.+.|... .++.+ ...+...+.+|.+-.|+|.|--.|+++.++.++
T Consensus 330 -----------------v~~d~~ip~~~~~Av~~li~~---a~R~A-g~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ 388 (647)
T COG1067 330 -----------------LARDGNIPHLDKDAVEELIRE---AARRA-GDQNKLTLRLRDLGNLVREAGDIAVSEGRKLIT 388 (647)
T ss_pred -----------------HHhcCCCCCCCHHHHHHHHHH---HHHhc-cccceeccCHHHHHHHHHHhhHHHhcCCcccCc
Confidence 1222 2588888888777664 23332 223456688999999999999999999887764
No 151
>PRK06893 DNA replication initiation factor; Validated
Probab=98.47 E-value=1.1e-06 Score=88.42 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=77.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
.++|+|+||||||+|++++++.+- +..|.+...... . ..+ .++ -..+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~---~~~-~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------F---SPA-VLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------h---hHH-HHh----hcccCCEEEEeChhhhc
Confidence 579999999999999999998742 223332110000 0 000 000 01235699999999875
Q ss_pred h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChH
Q psy11213 447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRD 523 (621)
Q Consensus 447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~ 523 (621)
. ..+..|+..++... .. ....++.|+|-....|+ .+.+.|.||+- -..+-...|+.+
T Consensus 105 ~~~~~~~~l~~l~n~~~----~~-------~~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 105 GNEEWELAIFDLFNRIK----EQ-------GKTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred CChHHHHHHHHHHHHHH----Hc-------CCcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeCCCCCHH
Confidence 3 33446666665321 00 11233444443211110 13378899873 013345666666
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213 524 NDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA 579 (621)
Q Consensus 524 ~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~ 579 (621)
...++.+... ...+..+++++.++|.+.
T Consensus 165 ~~~~iL~~~a----------------------------~~~~l~l~~~v~~~L~~~ 192 (229)
T PRK06893 165 QKIIVLQRNA----------------------------YQRGIELSDEVANFLLKR 192 (229)
T ss_pred HHHHHHHHHH----------------------------HHcCCCCCHHHHHHHHHh
Confidence 5555544332 122467888888888764
No 152
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.46 E-value=1.3e-06 Score=91.91 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=74.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
|++|+|+||+|||++++.+++.+....+. .....+.++...... -.++ ....+...++..+++|||++.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~vviiDe~~~l 114 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERGIDVIRNKIKEF-ARTAPVGGAPFKIIFLDEADNL 114 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccchHHHHHHHHHH-HhcCCCCCCCceEEEEeCcccC
Confidence 79999999999999999998875321110 000001000000000 0000 0001111234579999999999
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
..+.+..|+..|++. +..+.+|.++|... .+.+++.+|+. ++....++.++-
T Consensus 115 ~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~~--~~~~~~l~~~ei 166 (319)
T PRK00440 115 TSDAQQALRRTMEMY-------------SQNTRFILSCNYSS-------------KIIDPIQSRCA--VFRFSPLKKEAV 166 (319)
T ss_pred CHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc-------------ccchhHHHHhh--eeeeCCCCHHHH
Confidence 998889999988752 22345555666431 46788999983 345555555554
Q ss_pred HHHHHHHH
Q psy11213 526 LKLAQHIT 533 (621)
Q Consensus 526 ~~ia~~il 533 (621)
..+.++.+
T Consensus 167 ~~~l~~~~ 174 (319)
T PRK00440 167 AERLRYIA 174 (319)
T ss_pred HHHHHHHH
Confidence 44454444
No 153
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.4e-06 Score=97.05 Aligned_cols=73 Identities=27% Similarity=0.337 Sum_probs=49.9
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
+...|++|||+++|+.+.+++|+..||+- |..+. |++|.+|. .|++++.||+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~FIL~ttd~~--------------kL~~tI~SRc 168 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKFILATTDPL--------------KLPATILSRT 168 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEEEEEECChh--------------hCchHHHhhc
Confidence 45679999999999999999999999962 22333 44444442 5889999998
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il 533 (621)
..+-...++.+.-...+.+++
T Consensus 169 --~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 169 --QHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred --eeEEcCCCCHHHHHHHHHHHH
Confidence 344445555544444444444
No 154
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.9e-07 Score=101.53 Aligned_cols=127 Identities=26% Similarity=0.318 Sum_probs=84.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCC--ccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGS--SGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~--s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
.+||+||||||||.|+|+++..+.-..|. +|... -.+|.-++.++|... ++. -.| .+|+||||+|....
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~-----qAk--k~a-P~IIFIDEiDAvGr 256 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE-----QAK--KNA-PCIIFIDEIDAVGR 256 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH-----Hhh--ccC-CCeEEEehhhhccc
Confidence 79999999999999999999998776654 23221 123444444444211 110 111 38999999998643
Q ss_pred hh--------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 448 AD--------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 448 ~~--------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
.- .+.|+--|+- -. -+....|+||+|... -|++||++ |||
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEmDG---------F~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFD 312 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEMDG---------FG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFD 312 (596)
T ss_pred ccCCCCCCCchHHHHHHHHHHhhhcc---------CC--CCCceEEEecCCCcc-------------cchHhhcCCCCcc
Confidence 22 2344444442 11 234578999999763 37899987 999
Q ss_pred EEEEecCCCChHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~ 530 (621)
.-++++.||-.-.++|.+
T Consensus 313 -RqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 313 -RQILVELPDIKGREQILK 330 (596)
T ss_pred -eeeecCCcchhhHHHHHH
Confidence 788889999777777766
No 155
>PRK08727 hypothetical protein; Validated
Probab=98.44 E-value=1.4e-06 Score=87.77 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=70.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~ 445 (621)
.++|+|++|||||.|+++++..+.+ ..|.+... + .+.+. ..+ -..+-.+++|||++.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-----~---------~~~~~---~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-----A---------AGRLR---DALEALEGRSLVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH-----h---------hhhHH---HHHHHHhcCCEEEEeCcccc
Confidence 5999999999999999998776432 22322100 0 00000 000 0113358999999988
Q ss_pred C--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCCh
Q psy11213 446 P--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDR 522 (621)
Q Consensus 446 ~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~ 522 (621)
. +..+..++..++... ..+..+|.|+|-....| -.+.+.|.|||.- ..+..+.|+.
T Consensus 106 ~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l---------~~~~~dL~SRl~~~~~~~l~~~~~ 164 (233)
T PRK08727 106 AGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGL---------ALVLPDLRSRLAQCIRIGLPVLDD 164 (233)
T ss_pred cCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhh---------hhhhHHHHHHHhcCceEEecCCCH
Confidence 5 334556776665431 11235777777432222 2467899999732 3445566666
Q ss_pred HHHHHHHHH
Q psy11213 523 DNDLKLAQH 531 (621)
Q Consensus 523 ~~d~~ia~~ 531 (621)
+....+.++
T Consensus 165 e~~~~iL~~ 173 (233)
T PRK08727 165 VARAAVLRE 173 (233)
T ss_pred HHHHHHHHH
Confidence 655555554
No 156
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.43 E-value=5.1e-07 Score=98.60 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=72.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
+++|+|+||+|||.|++++++.+.. .+|.+...... .+..+. .+.....+. .. +.+..+++|||++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~~--~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFK---EK--YRSVDLLLIDDIQF 210 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHH---HH--HHhCCEEEEehhhh
Confidence 6899999999999999999886522 22322111000 000000 000000000 00 11346999999998
Q ss_pred CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213 445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD 521 (621)
Q Consensus 445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d 521 (621)
+... .+..++..++... . .| ..+|.|+|-.. .+--.+.+.|.|||.- ..+....|+
T Consensus 211 l~~~~~~~~~l~~~~n~~~---~-~~--------~~iiits~~~p---------~~l~~l~~~l~SRl~~g~~v~i~~pd 269 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALH---E-NG--------KQIVLTSDRPP---------KELPGLEERLRSRFEWGLVVDIEPPD 269 (405)
T ss_pred hcCCHHHHHHHHHHHHHHH---H-CC--------CCEEEecCCCH---------HHHhhhhhhhhhhccCCeEEEeCCCC
Confidence 7543 3445555554210 0 01 22344444221 1111367889999963 456678888
Q ss_pred hHHHHHHHHHHHh
Q psy11213 522 RDNDLKLAQHITY 534 (621)
Q Consensus 522 ~~~d~~ia~~il~ 534 (621)
.+....|++....
T Consensus 270 ~~~r~~il~~~~~ 282 (405)
T TIGR00362 270 LETRLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776543
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.2e-06 Score=98.71 Aligned_cols=152 Identities=18% Similarity=0.151 Sum_probs=84.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecCc--ccc---eeee--cc-ce
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDPI--TNE---MVLE--GG-AL 429 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~~--~g~---~~l~--~G-al 429 (621)
.++||.||||+|||++++.+++.+...... +|.- .+...+. ..+.. .+. ..+. .+ .-
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~---eId~a~~~~Id~iR~L~~~~~~~p 115 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV---EIDGASNRGIDDAKRLKEAIGYAP 115 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE---EEecccccCHHHHHHHHHHHHhhh
Confidence 378899999999999999999986431100 0000 0000000 01110 000 0000 00 01
Q ss_pred eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceE-EeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSI-LAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~v-iAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
..+...|++|||+++|+.+.+++|+..||+- +..+.+ ++|.++. .+..+|+|
T Consensus 116 ~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~ifILaTt~~~--------------kll~TI~S 168 (624)
T PRK14959 116 MEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVTFVLATTEPH--------------KFPVTIVS 168 (624)
T ss_pred hcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEEEEEecCChh--------------hhhHHHHh
Confidence 2234579999999999999999999999862 122334 4444443 47788999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
|+- .+.+..++.++-....+.++... ...++.+.+..++.++.
T Consensus 169 Rcq--~i~F~pLs~~eL~~~L~~il~~e---------gi~id~eal~lIA~~s~ 211 (624)
T PRK14959 169 RCQ--HFTFTRLSEAGLEAHLTKVLGRE---------GVDYDPAAVRLIARRAA 211 (624)
T ss_pred hhh--ccccCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence 993 33445555555444444443211 12356666666666553
No 158
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.41 E-value=3.1e-07 Score=107.61 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=79.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceee-eccceee---cCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVL-EGGALVL---ADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l-~~Galvl---Ad~gi~~IDEidk~~ 446 (621)
++||+||||||||+|++++++.+....+...... +.. ...|+..- ....+-. ...+|+||||+|.+.
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~----i~~-----~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~ 284 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPE----IMS-----KYYGESEERLREIFKEAEENAPSIIFIDEIDAIA 284 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHH----Hhc-----ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhc
Confidence 7999999999999999999998765443211100 000 00010000 0000001 124799999998864
Q ss_pred hh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 447 DA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 447 ~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
+. .++.|+..|+.-. -..++.||||+|+.. .|++++.+ |||.
T Consensus 285 ~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~- 339 (733)
T TIGR01243 285 PKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR- 339 (733)
T ss_pred ccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE-
Confidence 32 3456777775321 123468899999873 57888886 9985
Q ss_pred EEecCCCChHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~i 532 (621)
.+..+.|+.+...+|.+..
T Consensus 340 ~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 340 EIVIRVPDKRARKEILKVH 358 (733)
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 4556888888888887743
No 159
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.6e-06 Score=98.38 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++|||+++|+....++|+..||+- +..+ .|++|.+|. .++.+++||+ +
T Consensus 125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P~~~~fIL~Ttd~~--------------kil~TIlSRc-~ 176 (618)
T PRK14951 125 FKVFMIDEVHMLTNTAFNAMLKTLEEP-------------PEYLKFVLATTDPQ--------------KVPVTVLSRC-L 176 (618)
T ss_pred ceEEEEEChhhCCHHHHHHHHHhcccC-------------CCCeEEEEEECCch--------------hhhHHHHHhc-e
Confidence 469999999999999999999999862 2233 345555554 4788899999 3
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
.|- +...+.++-....++++... ...++.+.++.++..+
T Consensus 177 ~~~-f~~Ls~eei~~~L~~i~~~e---------gi~ie~~AL~~La~~s 215 (618)
T PRK14951 177 QFN-LRPMAPETVLEHLTQVLAAE---------NVPAEPQALRLLARAA 215 (618)
T ss_pred eee-cCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 444 44444444444444444311 1234555555555544
No 160
>KOG0743|consensus
Probab=98.41 E-value=7.2e-07 Score=95.12 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=87.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh--h
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD--A 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~--~ 448 (621)
.-||+||||||||+++-++|+.+.-.+|.-. -+.+.+ +.+ +..=.+..+++.|++|.+||..-+ .
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLe---------Lt~v~~--n~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLE---------LTEVKL--DSD--LRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEee---------eccccC--cHH--HHHHHHhCCCCcEEEEeeccccccccc
Confidence 3699999999999999999999988887622 212222 111 232233455789999999997522 1
Q ss_pred hhhhhHhhhc--ceEEEEe-----cCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCC
Q psy11213 449 DRTAIHEVME--QQTISIA-----KAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDK 519 (621)
Q Consensus 449 ~~~~L~eame--~q~isi~-----k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~ 519 (621)
.+..=.+..+ ...++.+ -+|....--..-.|+.|+|..+ .|+|||++ |.|+... .++
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-------------kLDPALlRpGRmDmhI~-mgy 369 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRMDMHIY-MGY 369 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-------------hcCHhhcCCCcceeEEE-cCC
Confidence 1111001111 1223321 1344433322347788889875 69999999 9996554 588
Q ss_pred CChHHHHHHHHHHHhh
Q psy11213 520 PDRDNDLKLAQHITYV 535 (621)
Q Consensus 520 ~d~~~d~~ia~~il~~ 535 (621)
...+.-+.+|...+..
T Consensus 370 Ctf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGI 385 (457)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 8889889999887753
No 161
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2.8e-06 Score=96.19 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=75.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC----------CccccceEEEeecCcccce-----ee--ec-cceeec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG----------SSGVGLTAAVMKDPITNEM-----VL--EG-GALVLA 432 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~----------~s~~gLta~~~~~~~~g~~-----~l--~~-GalvlA 432 (621)
.+||+||||||||++++.+++.+....-..|.. .++...- -...++.++.- .+ .. -+-..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas~~~vd~ir~i~~~v~~~p~~~ 118 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAASNNGVDEIRDIRDKVKYAPSEA 118 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeeccccCCHHHHHHHHHHHhhCcccC
Confidence 378899999999999999998853211100100 0000000 01111111000 00 00 001234
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
+..|++|||+++|.....++|+..||+- |.. +.|++|.+|. .++++++||+.
T Consensus 119 ~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ifIlatt~~~--------------ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIFILATTEPH--------------KIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChh--------------hCcHHHHhHhe
Confidence 5679999999999999999999999863 223 3455555553 58899999993
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il 533 (621)
. +-...++...-....+.++
T Consensus 172 -~-~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 172 -R-FDFKRISVEDIVERLKYIL 191 (559)
T ss_pred -E-EecCCCCHHHHHHHHHHHH
Confidence 3 3344555544444444443
No 162
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=2.4e-06 Score=95.35 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=81.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh---
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD--- 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~--- 447 (621)
++||+||||||||++++++++.+...+.... .+... +...... ..+. ......+.-....+++|||+|.+..
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~ieln--asd~r-~~~~i~~-~i~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d 115 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIELN--ASDQR-TADVIER-VAGE-AATSGSLFGARRKLILLDEVDGIHGNED 115 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEEc--ccccc-cHHHHHH-HHHH-hhccCcccCCCCeEEEEecCcccccccc
Confidence 8999999999999999999998754332211 11100 0000000 0000 0001111112467999999999876
Q ss_pred -hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH-hHhccccEEEEecCCCChHHH
Q psy11213 448 -ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA-ALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 448 -~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~-aLlsRFDli~~~~d~~d~~~d 525 (621)
....+|+..|+. .++.+|.++|... .++. +|.+|+ ..+.+..++...-
T Consensus 116 ~~~~~aL~~~l~~---------------~~~~iIli~n~~~-------------~~~~k~Lrsr~--~~I~f~~~~~~~i 165 (482)
T PRK04195 116 RGGARAILELIKK---------------AKQPIILTANDPY-------------DPSLRELRNAC--LMIEFKRLSTRSI 165 (482)
T ss_pred hhHHHHHHHHHHc---------------CCCCEEEeccCcc-------------ccchhhHhccc--eEEEecCCCHHHH
Confidence 345677777653 2345667777652 2444 788888 3445566666666
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..+++.++... ...++.+.+..++..+
T Consensus 166 ~~~L~~i~~~e---------gi~i~~eaL~~Ia~~s 192 (482)
T PRK04195 166 VPVLKRICRKE---------GIECDDEALKEIAERS 192 (482)
T ss_pred HHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 66666555321 1235555555555443
No 163
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2.9e-06 Score=95.81 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=74.4
Q ss_pred c-EEEeCCCCcchhHHHHHHHhhccccEE----ecCC-------CCccccceEEEeecCcc--cc--e-eeec---ccee
Q psy11213 371 N-ICLMGDPGVAKSQLLSYIERLARRSQY----TTGR-------GSSGVGLTAAVMKDPIT--NE--M-VLEG---GALV 430 (621)
Q Consensus 371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~-------~~s~~gLta~~~~~~~~--g~--~-~l~~---Galv 430 (621)
| +||+||+|||||++++.+++.+....- -+|. ..+..+-.--+..+..+ |- . .+.. -.-.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~ 115 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA 115 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 6 589999999999999999987542100 0010 00000000001111110 00 0 0000 0012
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.++..|++|||+++|+.+.+++|+..||+- +.. +.|++|.++. .|.++|.||
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~~~~fIL~tte~~--------------kll~TI~SR 168 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PEHLIFIFATTEPE--------------KVLPTIRSR 168 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCChH--------------hhHHHHHHh
Confidence 356789999999999999999999999971 222 3455565553 588999999
Q ss_pred ccEEEEecCCCChHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il 533 (621)
+ ..|- +...+.+.-.+...+++
T Consensus 169 c-~~~~-F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 169 T-HHYP-FRLLPPRTMRALIARIC 190 (584)
T ss_pred c-eEEE-eeCCCHHHHHHHHHHHH
Confidence 8 3333 33444443333344443
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.38 E-value=3.6e-07 Score=82.37 Aligned_cols=129 Identities=24% Similarity=0.302 Sum_probs=69.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceE----EEeec--CcccceeeeccceeecCC---Ce
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTA----AVMKD--PITNEMVLEGGALVLADQ---GI 436 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta----~~~~~--~~~g~~~l~~GalvlAd~---gi 436 (621)
.+++|+||||||||++++.++..+... + +............. ....+ ...+....+ ..+..+.. ++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCCE
Confidence 489999999999999999999987664 2 22222111100000 00000 001111111 22233333 99
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
++|||++.+.............. ..............+|+|+|+. ....+..+..|+|..+..
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDE------------KDLGPALLRRRFDRRIVL 144 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCC------------ccCchhhhhhccceEEEe
Confidence 99999999988766654433111 0000111224457899999961 123566666688755544
No 165
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=2.7e-06 Score=85.33 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=64.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
.++|+|++|+|||+|++++++.. ...|.+... + +. ..+.....++++||+++.+.. .+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~~-----~---------~~------~~~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPNE-----I---------GS------DAANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCEEecHHH-----c---------ch------HHHHhhhcCeEEEECCCCCCC-CH
Confidence 49999999999999999988663 222322210 0 00 001111236899999998753 45
Q ss_pred hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCChHHHHHHH
Q psy11213 451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDNDLKLA 529 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d~~~d~~ia 529 (621)
..|+..++.- ......+|.|++.....|. ...+.|.|||.- .++....|+.+...++.
T Consensus 104 ~~lf~l~n~~------------~~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 104 TGLFHLINSV------------RQAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred HHHHHHHHHH------------HhCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 5566655421 1112345555543221111 235789999841 33334556655555555
Q ss_pred HHH
Q psy11213 530 QHI 532 (621)
Q Consensus 530 ~~i 532 (621)
+..
T Consensus 163 ~~~ 165 (226)
T PRK09087 163 FKL 165 (226)
T ss_pred HHH
Confidence 443
No 166
>PHA01747 putative ATP-dependent protease
Probab=98.38 E-value=1.8e-06 Score=89.87 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=105.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh-
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD- 447 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~- 447 (621)
+.|++=.||+|||||.+.+.+.+.+|.++ +|..+|-+.|. .+..+|. .|.+.+ .-++++||+..+..
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~LF----yN~~t~~----~GLVg~--~D~VaFDEVa~i~f~ 257 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANLV----YDAKTNA----LGLVFL--SNGLIFDEIQTWKDS 257 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHhe----EecCCCc----eeEEee--ccEEEEEccccccCC
Confidence 46999999999999999999999888877 55555555455 3444443 354443 35789999998662
Q ss_pred ---hhhhhhHhhhcceEEEEecCCeEE--ecCCcceEEeecCCCC---CCCCCCC---C-ccc--cc-CCCHhHhccccE
Q psy11213 448 ---ADRTAIHEVMEQQTISIAKAGIMT--RLNARVSILAAANPAY---GRYNPKR---S-IEQ--NI-QLPAALLSRFDL 512 (621)
Q Consensus 448 ---~~~~~L~eame~q~isi~k~gi~~--~l~ar~~viAa~Np~~---g~~~~~~---~-~~~--~~-~L~~aLlsRFDl 512 (621)
+....|...||++..+-.+.+... +.++.++++-+.|+.. ++|.... . +.+ -+ .+.+||||||-+
T Consensus 258 ~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi 337 (425)
T PHA01747 258 NMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI 337 (425)
T ss_pred CHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence 345667777999999986654444 7788899999888762 2232200 0 111 11 247899999952
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG 563 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~ 563 (621)
+ -...|....|..+ .-..+....||.+|++.++
T Consensus 338 ~--g~~~pkIs~d~~~----------------sG~vL~~tilr~~i~~~q~ 370 (425)
T PHA01747 338 I--IVNEKKITYDDII----------------SGRVLYPTILRGLISLVQS 370 (425)
T ss_pred c--ccccCcCCHHHhc----------------ccceeHHHHHHHHHHHHHH
Confidence 2 2222221111111 2234667788888887764
No 167
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.6e-06 Score=95.72 Aligned_cols=130 Identities=23% Similarity=0.234 Sum_probs=73.1
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEe----cCCC--------CccccceEEEeecCc--ccc---e-eee-c-cceee
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYT----TGRG--------SSGVGLTAAVMKDPI--TNE---M-VLE-G-GALVL 431 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~----~g~~--------~s~~gLta~~~~~~~--~g~---~-~l~-~-Galvl 431 (621)
+||.||||+|||++++.+++.+...... +|.- .....+. ..+.. .+. . .++ . ..-..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~---ei~~~~~~~vd~ir~l~~~~~~~p~~ 117 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI---EVDAASNTQVDAMRELLDNAQYAPTR 117 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee---EeeccccCCHHHHHHHHHHHhhCccc
Confidence 5899999999999999999886321100 0110 0000000 00100 000 0 000 0 00012
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
+...|++|||+++|+....++|+..||+- |.. +.|++|.||. .++.+++||+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~fIL~t~d~~--------------kil~tI~SRc 170 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC 170 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEEEEEEeCChh--------------hCchhHHHHH
Confidence 34579999999999999999999999872 222 3455565554 4677899999
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il 533 (621)
..+-+..++.+.-.....+++
T Consensus 171 --~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 171 --LQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred --HHHhcCCCCHHHHHHHHHHHH
Confidence 334444454444444444444
No 168
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.36 E-value=3e-06 Score=92.08 Aligned_cols=162 Identities=13% Similarity=0.103 Sum_probs=84.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCcc-ccce----EEEee--cCcccceeee------ccceee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSG-VGLT----AAVMK--DPITNEMVLE------GGALVL 431 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~-~gLt----a~~~~--~~~~g~~~l~------~Galvl 431 (621)
+++++|+||||||++++.+++.+.. .+|......+. ..+. ..... .+..| +..+ ...+-.
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSG-LSFDELFDKIAEYLDE 135 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHHHHHHHh
Confidence 8999999999999999999876532 22332221111 0000 00000 00000 0000 000000
Q ss_pred c-CCCeeEecCCCCCC----hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 432 A-DQGICCIDEFDKLP----DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 432 A-d~gi~~IDEidk~~----~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
. ..-|++|||+|.+. .+....|+.++++. -..++++|+++|+.. +.+ .+.+.+
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~------------~~~~v~vI~i~~~~~--------~~~--~l~~~~ 193 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY------------PGARIGVIGISSDLT--------FLY--ILDPRV 193 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc------------CCCeEEEEEEECCcc--------hhh--hcCHHH
Confidence 0 12479999999986 22333444444321 012578899999762 112 267788
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
.+||.-..+.....+.++-..+.++.+.... ....++.+.+....+.+.
T Consensus 194 ~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-------~~~~~~~~~l~~i~~~~~ 242 (394)
T PRK00411 194 KSVFRPEEIYFPPYTADEIFDILKDRVEEGF-------YPGVVDDEVLDLIADLTA 242 (394)
T ss_pred HhcCCcceeecCCCCHHHHHHHHHHHHHhhc-------ccCCCCHhHHHHHHHHHH
Confidence 8888655667777777777777665543210 112355555555555443
No 169
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.34 E-value=3.4e-06 Score=90.67 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=51.1
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEec-CCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRL-NARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l-~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
.|++|||+|.+.......|.+.+.-... ..+ +.++.+|+++|... ..+ .+.+.+.+||.-.
T Consensus 131 ~vlvIDE~d~L~~~~~~~L~~l~~~~~~--------~~~~~~~v~lI~i~n~~~--------~~~--~l~~~~~s~~~~~ 192 (365)
T TIGR02928 131 LIIVLDEIDYLVGDDDDLLYQLSRARSN--------GDLDNAKVGVIGISNDLK--------FRE--NLDPRVKSSLCEE 192 (365)
T ss_pred EEEEECchhhhccCCcHHHHhHhccccc--------cCCCCCeEEEEEEECCcc--------hHh--hcCHHHhccCCcc
Confidence 4899999999964333444443321000 011 24578888888652 111 4778889999655
Q ss_pred EEecCCCChHHHHHHHHHHHh
Q psy11213 514 WLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~ 534 (621)
.+...+++.++-..+.++.+.
T Consensus 193 ~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 193 EIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred eeeeCCCCHHHHHHHHHHHHH
Confidence 566777777777777776654
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=9.9e-07 Score=97.65 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=94.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
+++|+|+||+|||+|++++++.+.. ..|.+...... .+..+. .+....++. . .+..-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~--~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNAL-RNNTMEEFK---E--KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HcCcHHHHH---H--HHhcCCEEEEehhhh
Confidence 6999999999999999999987532 12322111000 000000 000000000 0 011345999999998
Q ss_pred CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213 445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD 521 (621)
Q Consensus 445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d 521 (621)
+... .+..++..++... ..| ...|+++.+|.. +--.+.+.|.|||.- ..+....|+
T Consensus 223 l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~----------~l~~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPK----------ELPGLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHH----------HHHHHHHHHHhHhcCCeeEEecCCC
Confidence 7543 3445555443211 001 123444433321 001267899999952 455567888
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213 522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL 601 (621)
Q Consensus 522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l 601 (621)
.+....|++..... .+..+++++.++|++.+ .-++|.|
T Consensus 282 ~~~r~~il~~~~~~----------------------------~~~~l~~e~l~~ia~~~--------------~~~~R~l 319 (450)
T PRK00149 282 LETRIAILKKKAEE----------------------------EGIDLPDEVLEFIAKNI--------------TSNVREL 319 (450)
T ss_pred HHHHHHHHHHHHHH----------------------------cCCCCCHHHHHHHHcCc--------------CCCHHHH
Confidence 88777777665431 13456777777666531 1256666
Q ss_pred HHHHHHHHHHHHhcCC
Q psy11213 602 LAILRLSTALARLRLC 617 (621)
Q Consensus 602 eslirla~A~Akl~lr 617 (621)
++++.-..+.|.+..+
T Consensus 320 ~~~l~~l~~~~~~~~~ 335 (450)
T PRK00149 320 EGALNRLIAYASLTGK 335 (450)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 6666666666665543
No 171
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=4.5e-06 Score=93.14 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=76.0
Q ss_pred cE-EEeCCCCcchhHHHHHHHhhcccc--E-EecCC-----------CCccccceEEEeecC-cccceeeeccc-eeecC
Q psy11213 371 NI-CLMGDPGVAKSQLLSYIERLARRS--Q-YTTGR-----------GSSGVGLTAAVMKDP-ITNEMVLEGGA-LVLAD 433 (621)
Q Consensus 371 ~v-LL~G~PGtGKS~ll~~ia~~~pr~--~-~~~g~-----------~~s~~gLta~~~~~~-~~g~~~l~~Ga-lvlAd 433 (621)
|. ||+||||||||++++++++.+... . -.+|. ...-..+.++....- .-.+..-.... -..++
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~ 116 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG 116 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 55 999999999999999999875320 0 01110 000000111100000 00000000010 12345
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
..|++|||++.++....+.|+..||+. +..+.+|.++|.. -.+.+++.||+.
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep-------------~~~t~~Il~t~~~-------------~kl~~~I~SRc~-- 168 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEP-------------PEHVIFILATTEP-------------EKMPPTILSRTQ-- 168 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhC-------------CCCEEEEEEcCCh-------------hhCChHHhcceE--
Confidence 679999999999999999999999862 1223444444422 158899999993
Q ss_pred EEecCCCChHHHHHHHHHHHh
Q psy11213 514 WLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~ 534 (621)
.+-...++.++-....++++.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHH
Confidence 444455666655555555543
No 172
>KOG0726|consensus
Probab=98.31 E-value=2.4e-07 Score=92.98 Aligned_cols=127 Identities=21% Similarity=0.299 Sum_probs=77.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec---CCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA---DQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA---d~gi~~IDEidk~~ 446 (621)
.|+|+|+||||||.|++++|+.....+. -.+++.......|+- .+.--.+-.| ...|+||||||.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFl---------RvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFL---------RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhh---------hhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc
Confidence 6999999999999999999987322110 011111111101100 0000000011 24799999999853
Q ss_pred -----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 447 -----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 447 -----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
.+.|..++|.++|- +|-.. ..++-||.|+|..+ .|+++|++ |.| .
T Consensus 292 tKRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie-------------~LDPaLiRPGrID-r 349 (440)
T KOG0726|consen 292 TKRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRID-R 349 (440)
T ss_pred cccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEeccccc-------------ccCHhhcCCCccc-c
Confidence 34567888988873 23222 34578999999985 58899986 887 5
Q ss_pred EEecCCCChHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKL 528 (621)
Q Consensus 514 ~~~~d~~d~~~d~~i 528 (621)
-+.+..||+...++|
T Consensus 350 KIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 350 KIEFPLPDEKTKKKI 364 (440)
T ss_pred ccccCCCchhhhcee
Confidence 566677777665544
No 173
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.1e-06 Score=98.06 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=66.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEE------ecCCCCc----cccceEEE-eecCc--cc-----ceeeec-ccee
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQY------TTGRGSS----GVGLTAAV-MKDPI--TN-----EMVLEG-GALV 430 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~------~~g~~~s----~~gLta~~-~~~~~--~g-----~~~l~~-Galv 430 (621)
.++||+||||+|||++++.+++.+..... .+|.-.. ..|....+ ..+.. .+ +..-.. ..-+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~ 118 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV 118 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence 48999999999999999999998643211 1111000 00000000 01110 01 000000 0012
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.+...|++|||+++|+.+..++|+..||+- +..+. |++|.||. .+.++|.||
T Consensus 119 ~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~tvfIL~t~~~~--------------~llpTIrSR 171 (620)
T PRK14948 119 QARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPRVVFVLATTDPQ--------------RVLPTIISR 171 (620)
T ss_pred cCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcCeEEEEEeCChh--------------hhhHHHHhh
Confidence 345679999999999999999999999952 22333 44454443 477899999
Q ss_pred cc
Q psy11213 510 FD 511 (621)
Q Consensus 510 FD 511 (621)
+.
T Consensus 172 c~ 173 (620)
T PRK14948 172 CQ 173 (620)
T ss_pred ee
Confidence 93
No 174
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.30 E-value=3.8e-07 Score=84.22 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=73.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
+.+|||.|+|||||+.+|++++....+.. .. ...+.-.... ...+-.+.+|+++|+|++.++++
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~-----~~-----~~~~~~~~~~------~~~l~~a~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRAN-----GP-----FIVIDCASLP------AELLEQAKGGTLYLKNIDRLSPE 84 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCC-----S------CCCCCHHCTC------HHHHHHCTTSEEEEECGCCS-HH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccC-----CC-----eEEechhhCc------HHHHHHcCCCEEEECChHHCCHH
Confidence 45999999999999999999999865421 00 0000000001 11222358999999999999999
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
.|..|.+++++.. +.++.+|+++...-. ...+.-.+.+.|+.||+-..+.
T Consensus 85 ~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l~------~l~~~~~~~~~L~~~l~~~~i~ 134 (138)
T PF14532_consen 85 AQRRLLDLLKRQE------------RSNVRLIASSSQDLE------ELVEEGRFSPDLYYRLSQLEIH 134 (138)
T ss_dssp HHHHHHHHHHHCT------------TTTSEEEEEECC-CC------CHHHHSTHHHHHHHHCSTCEEE
T ss_pred HHHHHHHHHHhcC------------CCCeEEEEEeCCCHH------HHhhccchhHHHHHHhCCCEEe
Confidence 9999999998621 345678888765411 2344456788899988755443
No 175
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=4e-06 Score=95.94 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=75.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-----cCCCCccccceEEEe-ecCcc--c-----ceeeeccce-eecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----TGRGSSGVGLTAAVM-KDPIT--N-----EMVLEGGAL-VLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~~~s~~gLta~~~-~~~~~--g-----~~~l~~Gal-vlAd~gi 436 (621)
.+||+||||+|||++|+.+|+.+...... ++.-.+-.|....+. .+..+ | +..-....+ ..++..|
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV 121 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI 121 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEE
Confidence 36899999999999999999885432110 000000000000000 01100 0 000000001 1245679
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
++|||++.|..+..++|+..||+- |..+ .|++|.+|. .|+++++||+ ..+
T Consensus 122 ~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILaTte~~--------------KLl~TI~SRc--q~i 172 (725)
T PRK07133 122 YIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILATTEVH--------------KIPLTILSRV--QRF 172 (725)
T ss_pred EEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEEcCChh--------------hhhHHHHhhc--eeE
Confidence 999999999999999999999963 2233 345555553 5889999999 344
Q ss_pred ecCCCChHHHHHHHHHHH
Q psy11213 516 IQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il 533 (621)
-...++.+.-...+..++
T Consensus 173 eF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 173 NFRRISEDEIVSRLEFIL 190 (725)
T ss_pred EccCCCHHHHHHHHHHHH
Confidence 455555555444444443
No 176
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=1.6e-06 Score=97.46 Aligned_cols=134 Identities=19% Similarity=0.328 Sum_probs=73.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
.++|+|++|+|||.|++++++.+.. ..|.+...... .+..+. ++.....+. . ...+-.+++||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al-~~~~~~~f~--~---~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSI-RDGKGDSFR--R---RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HhccHHHHH--H---HhhcCCEEEEehhcc
Confidence 4999999999999999999987532 23333211000 011000 000000000 0 012347899999998
Q ss_pred CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213 445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD 521 (621)
Q Consensus 445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d 521 (621)
+..+. +..|+..++... ..+..||.|+|-... +--.+.+.|.|||.- +.+-+..||
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~---------eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPK---------QLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChH---------hhhhccHHHHhhhhcCceEEcCCCC
Confidence 75543 456666665421 112345556664321 112478899999952 334456777
Q ss_pred hHHHHHHHHHH
Q psy11213 522 RDNDLKLAQHI 532 (621)
Q Consensus 522 ~~~d~~ia~~i 532 (621)
.+....|++..
T Consensus 448 ~EtR~aIL~kk 458 (617)
T PRK14086 448 LETRIAILRKK 458 (617)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 177
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=3.1e-06 Score=93.08 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=69.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
+++|+|+||+|||+|++++++.+. +..|.+....... +..+. .......+. . ......+++|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l-~~~~~~~f~----~-~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAI-RSGEMQRFR----Q-FYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHH-hcchHHHHH----H-HcccCCEEEEcchhhhc
Confidence 799999999999999999998653 2233322110000 00000 000000000 0 01245799999999986
Q ss_pred hh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCChH
Q psy11213 447 DA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDRD 523 (621)
Q Consensus 447 ~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~~ 523 (621)
.. .+..++..++...- .| -.+|.|+|.. ..+-..+.+.|.|||. -+.+-...|+.+
T Consensus 216 ~k~~~qeelf~l~N~l~~----~~--------k~IIlts~~~---------p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHT----EG--------KLIVISSTCA---------PQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred CChhhHHHHHHHHHHHHH----CC--------CcEEEecCCC---------HHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 43 34555555432110 11 1344444432 1111247899999995 133444566666
Q ss_pred HHHHHHHHH
Q psy11213 524 NDLKLAQHI 532 (621)
Q Consensus 524 ~d~~ia~~i 532 (621)
....+.++.
T Consensus 275 ~r~~iL~~k 283 (445)
T PRK12422 275 GLRSFLERK 283 (445)
T ss_pred HHHHHHHHH
Confidence 655555543
No 178
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.29 E-value=2.6e-06 Score=91.18 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=76.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCC--------CccccceEEEeecCc--cc-----ceeeeccce-e
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRG--------SSGVGLTAAVMKDPI--TN-----EMVLEGGAL-V 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~--------~s~~gLta~~~~~~~--~g-----~~~l~~Gal-v 430 (621)
.+||+||||+|||++++.+++.+..... .+|.- .+...+ ...++. .+ +..-..... .
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~ 114 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV---IEIDAASNNGVDDIREILDNVKYAPS 114 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE---EEeeccccCCHHHHHHHHHHHhcCcc
Confidence 5799999999999999999988542210 01100 000001 001110 00 000000111 2
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.++..|++|||++.++....+.|+..||+. +..+.+|.++|... .+.+++.+|+
T Consensus 115 ~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~ 168 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEPH-------------KIPATILSRC 168 (355)
T ss_pred cCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccceeEEEEeCCHH-------------HHHHHHHhhe
Confidence 345679999999999998899999998752 33445555554321 4778999999
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~ 534 (621)
. .+....++.++-..+..+++.
T Consensus 169 ~--~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 169 Q--RFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred e--EEEcCCCCHHHHHHHHHHHHH
Confidence 3 344456666665556655543
No 179
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.29 E-value=2.2e-06 Score=98.11 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=65.9
Q ss_pred eeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 436 ICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 436 i~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
|++|||||.+....+..|+..++--. ...+++.|||.+|+.. +.+ .|.+.+.|||..-.+
T Consensus 872 IIILDEID~L~kK~QDVLYnLFR~~~----------~s~SKLiLIGISNdlD--------Lpe--rLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 872 ILIIDEIDYLITKTQKVLFTLFDWPT----------KINSKLVLIAISNTMD--------LPE--RLIPRCRSRLAFGRL 931 (1164)
T ss_pred EEEeehHhhhCccHHHHHHHHHHHhh----------ccCCeEEEEEecCchh--------cch--hhhhhhhhccccccc
Confidence 89999999998877788888876321 1245689999999762 111 356788899865446
Q ss_pred ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..++.+.++...|+++.+... ...++.+.+....+.+
T Consensus 932 vF~PYTaEQL~dILk~RAe~A---------~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 932 VFSPYKGDEIEKIIKERLENC---------KEIIDHTAIQLCARKV 968 (1164)
T ss_pred cCCCCCHHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHhh
Confidence 668888888888887765421 1245665555444443
No 180
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.5e-06 Score=94.10 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=50.7
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
+...|++|||+|+|++...++|+..||+-. +....|++|.||. .+.++++||+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~fIL~a~~~~--------------~llpTIrSRc- 168 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTVWLLCAPSPE--------------DVLPTIRSRC- 168 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCeEEEEECChH--------------HChHHHHhhC-
Confidence 345699999999999999999999998621 1225678888875 5899999999
Q ss_pred EEEEecCCCChHHHH
Q psy11213 512 LLWLIQDKPDRDNDL 526 (621)
Q Consensus 512 li~~~~d~~d~~~d~ 526 (621)
..+.+..|+.++-.
T Consensus 169 -~~i~f~~~~~~~i~ 182 (394)
T PRK07940 169 -RHVALRTPSVEAVA 182 (394)
T ss_pred -eEEECCCCCHHHHH
Confidence 45555666655543
No 181
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.9e-06 Score=93.29 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=74.0
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccE----EecCCC--------CccccceEEEeecCc--ccc---eeeec--cc-eee
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRG--------SSGVGLTAAVMKDPI--TNE---MVLEG--GA-LVL 431 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~--------~s~~gLta~~~~~~~--~g~---~~l~~--Ga-lvl 431 (621)
+||+||||+|||++++.+++.+.... -.+|.- .+...+. ..+.. .|. ..+.. .. -..
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~---eidaas~~gvd~ir~I~~~~~~~P~~ 117 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI---EIDAASNRGIDDIRALRDAVSYTPIK 117 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE---EEeCccCCCHHHHHHHHHHHHhCccc
Confidence 57899999999999999999864210 001100 0000111 00110 000 00000 00 013
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
++..|++|||+++|+.+..++|+..||+. |.. +.|++|.|+. .+++++.||+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~Il~tt~~~--------------kl~~tI~SRc 170 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIFILCTTEYD--------------KIPPTILSRC 170 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCHH--------------HHHHHHHHhc
Confidence 45679999999999999999999999863 222 3455554443 4788999999
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il 533 (621)
- .+....++.++-.....+++
T Consensus 171 ~--~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 171 Q--RFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred e--EEEcCCCCHHHHHHHHHHHH
Confidence 3 44445555555444444443
No 182
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=5.6e-06 Score=93.50 Aligned_cols=131 Identities=17% Similarity=0.190 Sum_probs=73.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCCC------ccccceEEEeecCc--cc--ce-ee----eccceee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRGS------SGVGLTAAVMKDPI--TN--EM-VL----EGGALVL 431 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~~------s~~gLta~~~~~~~--~g--~~-~l----~~Galvl 431 (621)
.+||+||||+|||++++.+++.+..... .+|.-. .+..+- -...+.. .+ .. .+ ...+ ..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idgas~~~vddIr~l~e~~~~~p-~~ 117 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDGASNTSVQDVRQIKEEIMFPP-AS 117 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecCcccCCHHHHHHHHHHHHhch-hc
Confidence 4899999999999999999998643210 011000 000000 0111110 00 00 00 0011 23
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
++..|++|||+++|+....++|+..||+- |..+.+| +|.++. .|+++|.||+
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vfI~~tte~~--------------kL~~tI~SRc 170 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVFIFATTEVH--------------KLPATIKSRC 170 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEEEEecCChH--------------HhHHHHHHhc
Confidence 46679999999999999999999999862 2334444 444442 4889999999
Q ss_pred cEEEEecCCCChHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~i 532 (621)
. .+ -...++.+.-...++.+
T Consensus 171 ~-~~-~f~~l~~~el~~~L~~i 190 (563)
T PRK06647 171 Q-HF-NFRLLSLEKIYNMLKKV 190 (563)
T ss_pred e-EE-EecCCCHHHHHHHHHHH
Confidence 4 33 33334444433333333
No 183
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.8e-06 Score=83.29 Aligned_cols=138 Identities=21% Similarity=0.335 Sum_probs=91.2
Q ss_pred CCCeeEecCCCCCCh------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc
Q psy11213 433 DQGICCIDEFDKLPD------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI 500 (621)
Q Consensus 433 d~gi~~IDEidk~~~------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~ 500 (621)
+.||+|||||||+.. ..|.-|+...|..+++- |-|.+.+-+ ..+||| |.|. ++.-.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkTdH--ILFIas-----GAFh----~sKPS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKTDH--ILFIAS-----GAFH----VAKPS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-cccccccce--EEEEec-----Ccee----cCChh
Confidence 569999999999532 23456777777666653 445443322 345554 3332 23334
Q ss_pred CCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Q psy11213 501 QLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVK 578 (621)
Q Consensus 501 ~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~ 578 (621)
+|-|.|--||. |.+-.+..+.+.-.+|.. .-...++++|.+..+.. ...+++++.+.|++
T Consensus 318 DLiPELQGRfP-IRVEL~~Lt~~Df~rILt-----------------ep~~sLikQY~aLlkTE~v~l~FtddaI~~iAe 379 (444)
T COG1220 318 DLIPELQGRFP-IRVELDALTKEDFERILT-----------------EPKASLIKQYKALLKTEGVELEFTDDAIKRIAE 379 (444)
T ss_pred hcChhhcCCCc-eEEEcccCCHHHHHHHHc-----------------CcchHHHHHHHHHHhhcCeeEEecHHHHHHHHH
Confidence 78899999995 667777776665554442 12356799999998876 67789999999999
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213 579 AYTELRKVARNSRDMSYTSARNLLAILR 606 (621)
Q Consensus 579 ~y~~lR~~~~~~~~~~~~t~R~leslir 606 (621)
...++.... -.+..|.|..++.
T Consensus 380 iA~~vN~~~------ENIGARRLhTvlE 401 (444)
T COG1220 380 IAYQVNEKT------ENIGARRLHTVLE 401 (444)
T ss_pred HHHHhcccc------cchhHHHHHHHHH
Confidence 877765442 2367788776653
No 184
>PRK05642 DNA replication initiation factor; Validated
Probab=98.26 E-value=1e-05 Score=81.66 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=84.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
+++|+|++|+|||.|++++++.+. +..|.+... +... ...+ ++ ...+..+++||+++...
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~-----~~~~------~~~~-~~----~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE-----LLDR------GPEL-LD----NLEQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH-----HHhh------hHHH-HH----hhhhCCEEEEechhhhc
Confidence 789999999999999999987532 222322111 1000 0000 00 01123589999999764
Q ss_pred h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCCCCh
Q psy11213 447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDKPDR 522 (621)
Q Consensus 447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~~d~ 522 (621)
. ..+..|+..++.-. ..+..+|.|+|-....| ..+.+.|.|||- +++- ...|+.
T Consensus 111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l---------~~~~~~L~SRl~~gl~~~-l~~~~~ 168 (234)
T PRK05642 111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPREL---------PIKLPDLKSRLTLALVFQ-MRGLSD 168 (234)
T ss_pred CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHc---------CccCccHHHHHhcCeeee-cCCCCH
Confidence 3 33456777665311 11123444444221111 124688999983 3333 344444
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213 523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL 602 (621)
Q Consensus 523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le 602 (621)
+....+.+. .|...+..+++++.++|.+.. .-+.|.++
T Consensus 169 e~~~~il~~----------------------------ka~~~~~~l~~ev~~~L~~~~--------------~~d~r~l~ 206 (234)
T PRK05642 169 EDKLRALQL----------------------------RASRRGLHLTDEVGHFILTRG--------------TRSMSALF 206 (234)
T ss_pred HHHHHHHHH----------------------------HHHHcCCCCCHHHHHHHHHhc--------------CCCHHHHH
Confidence 444333331 233334678888888887632 12577777
Q ss_pred HHHHHHHH
Q psy11213 603 AILRLSTA 610 (621)
Q Consensus 603 slirla~A 610 (621)
+++..-..
T Consensus 207 ~~l~~l~~ 214 (234)
T PRK05642 207 DLLERLDQ 214 (234)
T ss_pred HHHHHHHH
Confidence 76665543
No 185
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=7.3e-06 Score=88.32 Aligned_cols=134 Identities=17% Similarity=0.140 Sum_probs=73.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCC--CccccceEEEeecCcc-cceeeeccce-eecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRG--SSGVGLTAAVMKDPIT-NEMVLEGGAL-VLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~--~s~~gLta~~~~~~~~-g~~~l~~Gal-vlAd~gi~~IDEidk~ 445 (621)
++||+||||+|||++++.+++.+....... +.. .....+.+........ .+..-+.... ..++..+++|||++.+
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l 120 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML 120 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc
Confidence 799999999999999999988754321110 000 0000000000000000 0000000111 1345679999999999
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
.....+.++..||+. +..+.+|.++|.. -.+.+++.||+ .++-...++.++-
T Consensus 121 ~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~-------------~kl~~~l~sr~--~~v~~~~~~~~~l 172 (367)
T PRK14970 121 SSAAFNAFLKTLEEP-------------PAHAIFILATTEK-------------HKIIPTILSRC--QIFDFKRITIKDI 172 (367)
T ss_pred CHHHHHHHHHHHhCC-------------CCceEEEEEeCCc-------------ccCCHHHHhcc--eeEecCCccHHHH
Confidence 998889999888752 2233444444422 15788999999 3444555554444
Q ss_pred HHHHHHH
Q psy11213 526 LKLAQHI 532 (621)
Q Consensus 526 ~~ia~~i 532 (621)
......+
T Consensus 173 ~~~l~~~ 179 (367)
T PRK14970 173 KEHLAGI 179 (367)
T ss_pred HHHHHHH
Confidence 4344333
No 186
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=2.1e-06 Score=85.79 Aligned_cols=174 Identities=20% Similarity=0.300 Sum_probs=94.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
.++|+|++|+|||.|++++++.+- +.+|.+....... ... ...+....++ . --+.+-.++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~-~~~~~~~~~~--~---~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FAD-ALRDGEIEEF--K---DRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHH-HHHTTSHHHH--H---HHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHH-HHHcccchhh--h---hhhhcCCEEEEecchh
Confidence 689999999999999999987632 2233322111000 000 0000000000 0 0122457999999999
Q ss_pred CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE-EEEecCCCC
Q psy11213 445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPD 521 (621)
Q Consensus 445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl-i~~~~d~~d 521 (621)
+.... +..|...++.-. ..| -.+|.|++-.... --.+.+.|.|||.- ..+-...|+
T Consensus 109 l~~~~~~q~~lf~l~n~~~----~~~--------k~li~ts~~~P~~---------l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI----ESG--------KQLILTSDRPPSE---------LSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH----HTT--------SEEEEEESS-TTT---------TTTS-HHHHHHHHCSEEEEE----
T ss_pred hcCchHHHHHHHHHHHHHH----hhC--------CeEEEEeCCCCcc---------ccccChhhhhhHhhcchhhcCCCC
Confidence 87765 566766665421 011 2334444322111 12478899999953 233346666
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213 522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL 601 (621)
Q Consensus 522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l 601 (621)
.+....++++. |+..+..+++++.++|.+.+ .-++|.|
T Consensus 168 ~~~r~~il~~~----------------------------a~~~~~~l~~~v~~~l~~~~--------------~~~~r~L 205 (219)
T PF00308_consen 168 DEDRRRILQKK----------------------------AKERGIELPEEVIEYLARRF--------------RRDVREL 205 (219)
T ss_dssp HHHHHHHHHHH----------------------------HHHTT--S-HHHHHHHHHHT--------------TSSHHHH
T ss_pred HHHHHHHHHHH----------------------------HHHhCCCCcHHHHHHHHHhh--------------cCCHHHH
Confidence 66555555443 33345679999999988642 2368999
Q ss_pred HHHHHHHHHHHHh
Q psy11213 602 LAILRLSTALARL 614 (621)
Q Consensus 602 eslirla~A~Akl 614 (621)
++++.--.|+|++
T Consensus 206 ~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 206 EGALNRLDAYAQL 218 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999888888876
No 187
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=5.8e-06 Score=93.97 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE----ecCCC--------CccccceEEEeecCccc----ce-eeecc---cee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY----TTGRG--------SSGVGLTAAVMKDPITN----EM-VLEGG---ALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~----~~g~~--------~s~~gLta~~~~~~~~g----~~-~l~~G---alv 430 (621)
.+||+||||+|||++++.+++.+..... -+|.- .+...+ ...+..+. +. .+... .-.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~---~eid~~s~~~v~~ir~l~~~~~~~p~ 116 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV---FEIDGASNTGVDDIRELRENVKYLPS 116 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe---eeeeccCccCHHHHHHHHHHHHhccc
Confidence 3699999999999999999988542110 00100 000000 01111000 00 00000 012
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.++..|++|||+++|+....++|+..||+- +..+. |++|.+|. .|+++++||
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~fIl~t~~~~--------------kl~~tI~SR 169 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKFIFATTEPH--------------KVPITILSR 169 (576)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEEEEEeCChh--------------hhhHHHHHh
Confidence 346689999999999999999999999962 23334 44554453 589999999
Q ss_pred ccEEEEecCCCChHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il 533 (621)
+ ..+-+..++.+.-......++
T Consensus 170 c--~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 170 C--QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred h--hhhhcCCCCHHHHHHHHHHHH
Confidence 9 333334444444333444443
No 188
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4e-06 Score=91.28 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=25.7
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~ 459 (621)
.++..|++|||+++|+.+.++.|+..||+
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 45677999999999999999999999985
No 189
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.23 E-value=3.3e-06 Score=90.42 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~ 449 (621)
.|++++||||||||.|+..+...+ ...+|.-.+.+.|..... ++ ..|.+ +.-.+++|||+..++-+.
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~----~~----~lg~v--~~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIS----TR----QIGLV--GRWDVVAFDEVATLKFAK 276 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHH----HH----HHhhh--ccCCEEEEEcCCCCcCCc
Confidence 399999999999999999876551 122343333333332111 11 12222 234689999998854333
Q ss_pred ----hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCC
Q psy11213 450 ----RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485 (621)
Q Consensus 450 ----~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np 485 (621)
...|-..|+++..+..+ .. ..+.++++--.|-
T Consensus 277 ~~~~v~imK~yMesg~fsRG~--~~--~~a~as~vfvGNi 312 (449)
T TIGR02688 277 PKELIGILKNYMESGSFTRGD--ET--KSSDASFVFLGNV 312 (449)
T ss_pred hHHHHHHHHHHHHhCceeccc--ee--eeeeeEEEEEccc
Confidence 36677779999988733 22 3344455444443
No 190
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.21 E-value=1e-05 Score=80.89 Aligned_cols=164 Identities=22% Similarity=0.249 Sum_probs=93.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEE-EeecCcccce-eeeccceeecCCCeeEecCCCC-CC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAA-VMKDPITNEM-VLEGGALVLADQGICCIDEFDK-LP 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~-~~~~~~~g~~-~l~~GalvlAd~gi~~IDEidk-~~ 446 (621)
.|+||.|++|||||+++|++...... .||--- +.++. -+.. .+-.-.--....=|+|+|++.= ..
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~-----------~GLRlIev~k~~-L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~ 120 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYAD-----------QGLRLIEVSKED-LGDLPELLDLLRDRPYKFILFCDDLSFEEG 120 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhh-----------cCceEEEECHHH-hccHHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence 39999999999999999998876321 011110 00000 0000 0000000012356899999753 34
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCCCCCC-------cccccCCCHhHhccccEEEEe
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYNPKRS-------IEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~~~~~-------~~~~~~L~~aLlsRFDli~~~ 516 (621)
+..-..|-.+|| |.....|.++.|.||+|.. .-.|..+.+ ..+.++=.-+|-+||. +.+.
T Consensus 121 d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG-L~l~ 190 (249)
T PF05673_consen 121 DTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG-LWLS 190 (249)
T ss_pred cHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC-cEEE
Confidence 444556666665 3334558899999999974 222222221 1122222236889997 5666
Q ss_pred cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCC-HHHHHHHHHHHHcC
Q psy11213 517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPID-MSLVRRYIDLCKGK 564 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~-~~~lr~~i~~ar~~ 564 (621)
...|+.+.-.+|+++.+..+. -.++ .+.-++.++||...
T Consensus 191 F~~~~q~~YL~IV~~~~~~~g---------~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 191 FYPPDQEEYLAIVRHYAERYG---------LELDEEELRQEALQWALRR 230 (249)
T ss_pred ecCCCHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHHc
Confidence 688899999999998875331 1233 34446667777654
No 191
>KOG0744|consensus
Probab=98.19 E-value=3.2e-06 Score=86.24 Aligned_cols=134 Identities=24% Similarity=0.315 Sum_probs=78.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec----------CCC---ee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA----------DQG---IC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA----------d~g---i~ 437 (621)
=|||-||||||||+|.|++|+.+. +.+.++..-+. |.. +--......|--|.|.+|.- |.| .+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~-liE-inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQ-LIE-INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhe--eeecCccccce-EEE-EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 689999999999999999998753 33333322110 110 00000011232233322211 222 57
Q ss_pred EecCCCCCChh---------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCC
Q psy11213 438 CIDEFDKLPDA---------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQL 502 (621)
Q Consensus 438 ~IDEidk~~~~---------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L 502 (621)
+|||.+.+... .-++++.-|++= +-...+.++||+|-.. .|
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------K~~~NvliL~TSNl~~-------------si 310 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------KRYPNVLILATSNLTD-------------SI 310 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----------ccCCCEEEEeccchHH-------------HH
Confidence 89999874321 123444444431 1134589999999763 58
Q ss_pred CHhHhccccEEEEecCCCChHHHHHHHHHHH
Q psy11213 503 PAALLSRFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 503 ~~aLlsRFDli~~~~d~~d~~~d~~ia~~il 533 (621)
+.|+.||=| +...+.+|......+|.+.-+
T Consensus 311 D~AfVDRAD-i~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 311 DVAFVDRAD-IVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHhhhHhh-heeecCCccHHHHHHHHHHHH
Confidence 899999999 555568888887777766544
No 192
>KOG0728|consensus
Probab=98.18 E-value=1.5e-06 Score=85.68 Aligned_cols=129 Identities=21% Similarity=0.311 Sum_probs=81.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCC-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKL- 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~- 445 (621)
.+||+||||||||.|+++++.....-. .++|.. |....+ ..|.. ..-..++.| -..|+|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgse-----lvqk~i---gegsr-mvrelfvmarehapsiifmdeidsig 253 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE-----LVQKYI---GEGSR-MVRELFVMAREHAPSIIFMDEIDSIG 253 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHH-----HHHHHh---hhhHH-HHHHHHHHHHhcCCceEeeecccccc
Confidence 799999999999999999998743322 122211 110000 01110 001122333 2479999999985
Q ss_pred ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
+.+.|..++|.+.|- +|-..+- ..-||.|+|... -|+++||+ |.| .
T Consensus 254 s~r~e~~~ggdsevqrtmlellnql------dgfeatk--nikvimatnrid-------------ild~allrpgrid-r 311 (404)
T KOG0728|consen 254 SSRVESGSGGDSEVQRTMLELLNQL------DGFEATK--NIKVIMATNRID-------------ILDPALLRPGRID-R 311 (404)
T ss_pred cccccCCCCccHHHHHHHHHHHHhc------ccccccc--ceEEEEeccccc-------------cccHhhcCCCccc-c
Confidence 355678899998873 3433332 357899999873 37888886 777 5
Q ss_pred EEecCCCChHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~ 530 (621)
-+-++.|+++....|.+
T Consensus 312 kiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILK 328 (404)
T ss_pred cccCCCCCHHHHHHHHH
Confidence 56678888887777665
No 193
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=4.3e-06 Score=92.05 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=71.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
+++|+|+||+|||.|++++++.+. +..|.+...... .+..+. +.....++. . -......+++|||++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~-~~~~~~~f~--~--~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEFR--E--KYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-hcccHHHHH--H--HHHhcCCEEEEechhh
Confidence 799999999999999999988642 223433211000 000000 000000000 0 0011346999999997
Q ss_pred CChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCC
Q psy11213 445 LPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPD 521 (621)
Q Consensus 445 ~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d 521 (621)
+... .+..++..++.-.- .| ...|+++.++.. +--.+.+.+.|||. -..+-.+.||
T Consensus 206 l~~~~~~q~elf~~~n~l~~----~~-------k~iIitsd~~p~----------~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHD----SG-------KQIVICSDREPQ----------KLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHH----cC-------CeEEEECCCCHH----------HHHHHHHHHhhHHhcCceEeeCCCC
Confidence 6432 34455555432110 11 123343333321 11136788999995 2355668888
Q ss_pred hHHHHHHHHHHH
Q psy11213 522 RDNDLKLAQHIT 533 (621)
Q Consensus 522 ~~~d~~ia~~il 533 (621)
.+....|++...
T Consensus 265 ~e~r~~IL~~~~ 276 (440)
T PRK14088 265 EETRKKIARKML 276 (440)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 194
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.3e-05 Score=91.59 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred c-EEEeCCCCcchhHHHHHHHhhccccEEe-----cCCC------CccccceEEEeecCc--cc--ce-e-e---eccce
Q psy11213 371 N-ICLMGDPGVAKSQLLSYIERLARRSQYT-----TGRG------SSGVGLTAAVMKDPI--TN--EM-V-L---EGGAL 429 (621)
Q Consensus 371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~~------~s~~gLta~~~~~~~--~g--~~-~-l---~~Gal 429 (621)
| +||+||+|+|||++++.+++.+.-...+ +|.- ....... -...+.. .+ .. . + ...+
T Consensus 40 hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir~li~~~~~~P- 117 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIRNLIEQVRIPP- 117 (614)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHHHHHHHHhhCc-
Confidence 5 7999999999999999999975311100 1100 0000000 0011111 00 00 0 0 0011
Q ss_pred eecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEE-eecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL-AAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 430 vlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~vi-Aa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
..++..|++|||+++|+.+.+++|+..||+- |..+.+| +|.++. .|.++|.|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~tifIL~tt~~~--------------kIl~tI~S 170 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYAIFILATTEKH--------------KILPTILS 170 (614)
T ss_pred ccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCch--------------hchHHHHh
Confidence 2345679999999999999999999999962 2223344 443332 58899999
Q ss_pred ccc
Q psy11213 509 RFD 511 (621)
Q Consensus 509 RFD 511 (621)
|+.
T Consensus 171 Rc~ 173 (614)
T PRK14971 171 RCQ 173 (614)
T ss_pred hhh
Confidence 993
No 195
>KOG0735|consensus
Probab=98.16 E-value=6e-06 Score=91.77 Aligned_cols=131 Identities=26% Similarity=0.338 Sum_probs=84.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
-+|||+||||||||.|+.+++...+-.+ .+-+|+.- .|-..-.+++-.. +| -.|..+|+|+||||.+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~f-isvKGPElL~KyIGaSEq~vR~lF~-----rA---~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLRF-ISVKGPELLSKYIGASEQNVRDLFE-----RA---QSAKPCILFFDEFDSI 772 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCeeE-EEecCHHHHHHHhcccHHHHHHHHH-----Hh---hccCCeEEEecccccc
Confidence 3799999999999999999999865443 33333321 0000001111000 11 1234689999999997
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL 512 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl 512 (621)
.|. .-+.|+.-|+.-. | |. .+.|+||+.... -+++|||+ |+|
T Consensus 773 APkRGhDsTGVTDRVVNQlLTelDG~E------g----l~-GV~i~aaTsRpd-------------liDpALLRpGRlD- 827 (952)
T KOG0735|consen 773 APKRGHDSTGVTDRVVNQLLTELDGAE------G----LD-GVYILAATSRPD-------------LIDPALLRPGRLD- 827 (952)
T ss_pred CcccCCCCCCchHHHHHHHHHhhcccc------c----cc-eEEEEEecCCcc-------------ccCHhhcCCCccc-
Confidence 553 3457777775321 1 11 256666665442 48899997 999
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~ 534 (621)
..+..+.|++.+..+|.+-+.+
T Consensus 828 ~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 828 KLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred eeeeCCCCCcHHHHHHHHHHhh
Confidence 6777899999999999887755
No 196
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=5.8e-06 Score=96.90 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=76.1
Q ss_pred c-EEEeCCCCcchhHHHHHHHhhccccE----EecCC----------CCccccceEEEeecCcc--c--c-eeeec---c
Q psy11213 371 N-ICLMGDPGVAKSQLLSYIERLARRSQ----YTTGR----------GSSGVGLTAAVMKDPIT--N--E-MVLEG---G 427 (621)
Q Consensus 371 ~-vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~----------~~s~~gLta~~~~~~~~--g--~-~~l~~---G 427 (621)
| +||.|++|+|||++++.+++.+.... .-+|. +.....+. ..+..+ | + ..+.. -
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~---eidaas~~~Vd~iR~l~~~~~~ 114 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT---EIDAASHGGVDDARELRERAFF 114 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE---EecccccCCHHHHHHHHHHHHh
Confidence 5 79999999999999999999864210 00111 00011111 111100 0 0 00000 0
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
.-......|++|||+++|+....++|+..||+- +..+. |++|.|+. .|.++|
T Consensus 115 ~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~~~~fIl~tt~~~--------------kLl~TI 167 (824)
T PRK07764 115 APAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PEHLKFIFATTEPD--------------KVIGTI 167 (824)
T ss_pred chhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh--------------hhhHHH
Confidence 012345679999999999999999999999972 22333 44444433 478899
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
.||+ ..+-+..++.+.-...+..++.
T Consensus 168 rSRc--~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 168 RSRT--HHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred Hhhe--eEEEeeCCCHHHHHHHHHHHHH
Confidence 9999 3444455555555555555543
No 197
>KOG0991|consensus
Probab=98.16 E-value=1.5e-06 Score=84.89 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=69.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeeccceeecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
-|+++.||||||||+-+..+|+.+-...|..|.. .|.|+..+.-. -..|.-+.=.+......|+++||.|.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL----ELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVL----ELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS 124 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh----hccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence 3999999999999999999888753322222211 13332221110 00111111111112346999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
|....|.+|...||=-+ ..+.+.-|||... .+-+|+-||+-
T Consensus 125 MT~gAQQAlRRtMEiyS-------------~ttRFalaCN~s~-------------KIiEPIQSRCA 165 (333)
T KOG0991|consen 125 MTAGAQQALRRTMEIYS-------------NTTRFALACNQSE-------------KIIEPIQSRCA 165 (333)
T ss_pred hhhHHHHHHHHHHHHHc-------------ccchhhhhhcchh-------------hhhhhHHhhhH
Confidence 99999999999998321 1245556778653 47789999984
No 198
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.9e-05 Score=88.30 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=85.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-E--------ecCCCC--------ccccceEEEeecCc--cc-----ce--ee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-Y--------TTGRGS--------SGVGLTAAVMKDPI--TN-----EM--VL 424 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~--------~~g~~~--------s~~gLta~~~~~~~--~g-----~~--~l 424 (621)
.+||.|++|+|||++++.+++.+.-.. . .+|... +..++. ..++. .| +. ..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~---e~~a~s~~gvd~IReIie~~ 124 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL---EMDAASHTGVDDIREIIESV 124 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE---EecccccCCHHHHHHHHHHH
Confidence 599999999999999999999753211 0 011100 000000 00110 11 00 00
Q ss_pred eccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH
Q psy11213 425 EGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA 504 (621)
Q Consensus 425 ~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~ 504 (621)
+..+ +.++..|++|||+++|+....++|+..||+- +..+.+|.++|... .++.
T Consensus 125 ~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tte~~-------------kll~ 177 (598)
T PRK09111 125 RYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATTEIR-------------KVPV 177 (598)
T ss_pred Hhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeCChh-------------hhhH
Confidence 1111 3456789999999999999999999999862 33344444444321 4778
Q ss_pred hHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 505 ALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 505 aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
++.||+ ..+-...++.++-....+.++... ...++.+.+..++..+
T Consensus 178 tI~SRc--q~~~f~~l~~~el~~~L~~i~~ke---------gi~i~~eAl~lIa~~a 223 (598)
T PRK09111 178 TVLSRC--QRFDLRRIEADVLAAHLSRIAAKE---------GVEVEDEALALIARAA 223 (598)
T ss_pred HHHhhe--eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 899999 445555566555555555444311 1235555555555544
No 199
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=1.3e-05 Score=88.38 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=76.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-----cCC---------CCccccceEEEeecC--ccc-cee---ee-cc-c
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-----TGR---------GSSGVGLTAAVMKDP--ITN-EMV---LE-GG-A 428 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-----~g~---------~~s~~gLta~~~~~~--~~g-~~~---l~-~G-a 428 (621)
.+||+||||+|||++++.+++.+-..... +|. +. ...+. ..+. ..| +-. .+ .. .
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~-~~d~~---~i~g~~~~gid~ir~i~~~l~~~ 116 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT-SLDVL---EIDGASHRGIEDIRQINETVLFT 116 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC-CCceE---EeeccccCCHHHHHHHHHHHHhh
Confidence 48999999999999999999875321100 000 00 00000 0010 000 000 00 00 0
Q ss_pred eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc
Q psy11213 429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS 508 (621)
Q Consensus 429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls 508 (621)
-..++..|++|||+++|+.+..++|+..||+- +..+.+|.++|-. ..|.++|.|
T Consensus 117 ~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~~Il~t~~~-------------~kl~~tI~s 170 (451)
T PRK06305 117 PSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVKFFLATTEI-------------HKIPGTILS 170 (451)
T ss_pred hhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCceEEEEeCCh-------------HhcchHHHH
Confidence 02256789999999999999999999999862 2234455455432 158899999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|+ ..+-...+++++-...+..++
T Consensus 171 Rc--~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 171 RC--QKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred hc--eEEeCCCCCHHHHHHHHHHHH
Confidence 99 445556666665555554443
No 200
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=1.5e-05 Score=90.98 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=80.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE-----ecCCCCc----cccceEEE-eecCc--cc-----ce--eeeccceee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY-----TTGRGSS----GVGLTAAV-MKDPI--TN-----EM--VLEGGALVL 431 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-----~~g~~~s----~~gLta~~-~~~~~--~g-----~~--~l~~Galvl 431 (621)
.+||+|+||+|||++++.+++.+..... .+|.-.+ ..|....+ ..+.. .+ +. .+.... ..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~ 118 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-AL 118 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-cc
Confidence 4699999999999999999988532110 0010000 00000000 00110 00 00 001111 23
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
++..|++|||+++|+.+..+.|+..||+- +..+.+|.+++.. -.+.+++.||+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEep-------------p~~tv~Il~t~~~-------------~kll~tI~SR~~ 172 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHAIFILATTEV-------------HKVPATILSRCQ 172 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCCh-------------hhhhHHHHhccc
Confidence 56789999999999999999999999862 1223344333322 137788999993
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
.+.+..++..+-......+.... ...++.+.+..++.++
T Consensus 173 --~i~f~~l~~~el~~~L~~~a~~e---------gl~i~~eal~~La~~s 211 (585)
T PRK14950 173 --RFDFHRHSVADMAAHLRKIAAAE---------GINLEPGALEAIARAA 211 (585)
T ss_pred --eeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 33444455444333333333211 1235556666555544
No 201
>KOG1808|consensus
Probab=98.12 E-value=3.7e-06 Score=103.11 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=109.3
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEecC-C-CCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCC
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTG-R-GSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFD 443 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~-~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEid 443 (621)
|..++||.||.|+|||.+++++|+...+-+.... . ......+.++- ....+|+..++-|+||.| +|-.+++||++
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y-~~~~~g~l~freg~LV~Alr~G~~~vlD~ln 517 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTY-VADDNGDLVFREGVLVQALRNGDWIVLDELN 517 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhh-hcCCCCCeeeehhHHHHHHHhCCEEEecccc
Confidence 6689999999999999999999998655433221 1 11112222211 112378889999999998 78899999999
Q ss_pred CCChhhhhhhHhhhcc-eEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 444 KLPDADRTAIHEVMEQ-QTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 444 k~~~~~~~~L~eame~-q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
.++.++..+|..+++. +.+.+.........+.++.+.||-||.. .+.+.-.+..++++||. .+...+.+.
T Consensus 518 la~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~-------~y~grk~lsRa~~~rf~-e~~f~~~~e 588 (1856)
T KOG1808|consen 518 LAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG-------TYGGRKILSRALRNRFI-ELHFDDIGE 588 (1856)
T ss_pred ccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc-------ccchhhhhhhcccccch-hhhhhhcCc
Confidence 9999999999999988 8888887777777888899999999983 24455578999999994 444444443
No 202
>KOG0651|consensus
Probab=98.11 E-value=2.3e-06 Score=86.95 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=74.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe--cCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC--
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT--TGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-- 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-- 445 (621)
.++|+||||||||.+++++++...-.... ++.. .-.+|-.|..+++. | -.+.-+ -.+|+|+||||..
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem----f-~yA~~~---~pciifmdeiDAigG 239 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM----F-RYAREV---IPCIIFMDEIDAIGG 239 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH----H-HHHhhh---CceEEeehhhhhhcc
Confidence 68999999999999999999885433221 1111 11111111111111 0 001111 1389999999873
Q ss_pred ---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEE
Q psy11213 446 ---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLW 514 (621)
Q Consensus 446 ---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~ 514 (621)
+..++..|.+.++|- .| ..-..|+-+|.|+|... .|.+||++ |.| .+
T Consensus 240 Rr~se~Ts~dreiqrTLMeLlnqm------dg--fd~l~rVk~ImatNrpd-------------tLdpaLlRpGRld-rk 297 (388)
T KOG0651|consen 240 RRFSEGTSSDREIQRTLMELLNQM------DG--FDTLHRVKTIMATNRPD-------------TLDPALLRPGRLD-RK 297 (388)
T ss_pred EEeccccchhHHHHHHHHHHHHhh------cc--chhcccccEEEecCCcc-------------ccchhhcCCcccc-ce
Confidence 233455666666531 11 23356788999999763 58888886 776 55
Q ss_pred EecCCCChHHHHH
Q psy11213 515 LIQDKPDRDNDLK 527 (621)
Q Consensus 515 ~~~d~~d~~~d~~ 527 (621)
+..+.|++.....
T Consensus 298 ~~iPlpne~~r~~ 310 (388)
T KOG0651|consen 298 VEIPLPNEQARLG 310 (388)
T ss_pred eccCCcchhhcee
Confidence 6666777665554
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.4e-05 Score=91.53 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=114.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCcccceeee----ccceeecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMVLE----GGALVLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~l~----~GalvlAd~gi 436 (621)
|-+|+|+||+|||.++..+|.....+ +++-+.++ |.|+..+ .|+|.-. -..+-.+.+-|
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~----LvAGaky---RGeFEeRlk~vl~ev~~~~~vI 265 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS----LVAGAKY---RGEFEERLKAVLKEVEKSKNVI 265 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----Hhccccc---cCcHHHHHHHHHHHHhcCCCeE
Confidence 78899999999999999988763221 12211111 1111111 2322100 00112233568
Q ss_pred eEecCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 437 CCIDEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 437 ~~IDEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
+||||++.+- -+.-+.|-.++..+++ .+|||+.-.+ +..-++-++||-
T Consensus 266 LFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL---------------~~IGATT~~E--------YRk~iEKD~AL~ 322 (786)
T COG0542 266 LFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL---------------RCIGATTLDE--------YRKYIEKDAALE 322 (786)
T ss_pred EEEechhhhcCCCcccccccchhhhhHHHHhcCCe---------------EEEEeccHHH--------HHHHhhhchHHH
Confidence 9999998742 1233444455555443 4577776543 334467889999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~ 585 (621)
+|| .-+.++.|+.+.-..|.+-+-..+... ..-.++.+.|........++ ...|++.|.+.|-+.-..+|-
T Consensus 323 RRF--Q~V~V~EPs~e~ti~ILrGlk~~yE~h-----H~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 323 RRF--QKVLVDEPSVEDTIAILRGLKERYEAH-----HGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred hcC--ceeeCCCCCHHHHHHHHHHHHHHHHHc-----cCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 999 677889999999999988775543221 12467888999999988887 888999999999887766655
Q ss_pred H
Q psy11213 586 V 586 (621)
Q Consensus 586 ~ 586 (621)
.
T Consensus 396 ~ 396 (786)
T COG0542 396 E 396 (786)
T ss_pred c
Confidence 3
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=98.09 E-value=1.5e-05 Score=93.16 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=87.4
Q ss_pred ccEEEeC--CCCcchhHHHHHHHhhccccEEecCCCCccccceEEE------eecCcccceeeeccceeecCCCeeEecC
Q psy11213 370 INICLMG--DPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAV------MKDPITNEMVLEGGALVLADQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G--~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~------~~~~~~g~~~l~~GalvlAd~gi~~IDE 441 (621)
+|-+.-| |.+.|||++++++|+.+-.. +....-..+.|+. +++. -.++.- -..+..++..|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rgid~IR~i-Ik~~a~-~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERGINVIREK-VKEFAR-TKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCcccHHHHHHH-HHHHHh-cCCcCCCCCEEEEEEC
Confidence 4555667 88889999999999885211 0101111122221 1110 001000 0001001235999999
Q ss_pred CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
+|+|+.+.+++|+..||+- +..+.+|.+||+.. .+.++|.||+ ..+-+..++
T Consensus 639 aD~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC--~~i~F~~ls 690 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRC--AIFRFRPLR 690 (846)
T ss_pred cccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhc--eEEeCCCCC
Confidence 9999999999999999962 33467788888773 6889999999 444555666
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
.++-......+.... .-.++.+.+...+..+
T Consensus 691 ~~~i~~~L~~I~~~E---------gi~i~~e~L~~Ia~~s 721 (846)
T PRK04132 691 DEDIAKRLRYIAENE---------GLELTEEGLQAILYIA 721 (846)
T ss_pred HHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc
Confidence 665555555554321 1224556666555544
No 205
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=1.3e-05 Score=88.35 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=74.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
+++|+|++|+|||.|++++++.+. +..|.+...... .+..+. ... .+.. +.-.-...+-.+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l-~~~-~~~~--~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDIL-QKT-HKEI--EQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH-HHh-hhHH--HHHHHHhccCCEEEEecccc
Confidence 799999999999999999988532 122332211000 000000 000 0000 00000012346899999998
Q ss_pred CC--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCC
Q psy11213 445 LP--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPD 521 (621)
Q Consensus 445 ~~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d 521 (621)
+. +..+..|+..++...- .| -.+|.|+|-.. ..--.+.+.|.|||. -+.+-...|+
T Consensus 218 l~~k~~~~e~lf~l~N~~~~----~~--------k~iIltsd~~P---------~~l~~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFIE----ND--------KQLFFSSDKSP---------ELLNGFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred ccCCHHHHHHHHHHHHHHHH----cC--------CcEEEECCCCH---------HHHhhccHHHHHHHhCCceeccCCcC
Confidence 76 4456667666653210 11 13455555321 111247899999995 3455567777
Q ss_pred hHHHHHHHHHHHh
Q psy11213 522 RDNDLKLAQHITY 534 (621)
Q Consensus 522 ~~~d~~ia~~il~ 534 (621)
.+....+.++.+.
T Consensus 277 ~e~r~~iL~~~~~ 289 (450)
T PRK14087 277 NKTATAIIKKEIK 289 (450)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 206
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=9.2e-06 Score=78.97 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=44.9
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
++..|++|||+++|+++.++.|+..||+. +..+.+|.++|.. ..+.+++.||+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~-------------~~l~~~i~sr~- 147 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP-------------EKLLPTIRSRC- 147 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh-------------HhChHHHHhhc-
Confidence 45579999999999999999999999862 2233444444422 15889999999
Q ss_pred EEEEecCCCChHH
Q psy11213 512 LLWLIQDKPDRDN 524 (621)
Q Consensus 512 li~~~~d~~d~~~ 524 (621)
..+....++.++
T Consensus 148 -~~~~~~~~~~~~ 159 (188)
T TIGR00678 148 -QVLPFPPLSEEA 159 (188)
T ss_pred -EEeeCCCCCHHH
Confidence 345455555443
No 207
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.07 E-value=1.4e-05 Score=88.16 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=70.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCcc----ccceEE-----EeecCcc--c---ceeeeccce---eecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSG----VGLTAA-----VMKDPIT--N---EMVLEGGAL---VLAD 433 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~----~gLta~-----~~~~~~~--g---~~~l~~Gal---vlAd 433 (621)
--|+.|+-|||||+++|.+|+.+.-..-..+.-... .+++.+ +..|..+ | -..+.-... +.+.
T Consensus 40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r 119 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR 119 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence 568999999999999999999864332111110000 000000 1111111 1 000111111 2234
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
..|.+|||.++++....++||.-+|+---.+ ..|+||++|. .+|..++||+
T Consensus 120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV------------~FIlATTe~~--------------Kip~TIlSRc 170 (515)
T COG2812 120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHV------------KFILATTEPQ--------------KIPNTILSRC 170 (515)
T ss_pred ceEEEEecHHhhhHHHHHHHhcccccCccCe------------EEEEecCCcC--------------cCchhhhhcc
Confidence 4699999999999999999999998743222 4688999987 6999999998
No 208
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=1.7e-05 Score=90.21 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=45.1
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.++.-|++|||+++|+....++|+..||+- +..+ .|++|.++. .|.+++.||
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------------p~~tv~IL~t~~~~--------------kLl~TI~SR 177 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------------PPHAIFIFATTELH--------------KIPATIASR 177 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh--------------hhhHHHHhh
Confidence 456789999999999999999999999971 2223 344554432 588899999
Q ss_pred ccEEEEecCCCChHH
Q psy11213 510 FDLLWLIQDKPDRDN 524 (621)
Q Consensus 510 FDli~~~~d~~d~~~ 524 (621)
+ ..+-...++.++
T Consensus 178 c--~~vef~~l~~~e 190 (620)
T PRK14954 178 C--QRFNFKRIPLDE 190 (620)
T ss_pred c--eEEecCCCCHHH
Confidence 9 333334444443
No 209
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.04 E-value=1.6e-06 Score=87.07 Aligned_cols=113 Identities=22% Similarity=0.274 Sum_probs=80.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh-------ccccE-EecC--CCCcc-ccceEEEeecCcccceeeeccceeecCCCeeE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL-------ARRSQ-YTTG--RGSSG-VGLTAAVMKDPITNEMVLEGGALVLADQGICC 438 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~-------~pr~~-~~~g--~~~s~-~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ 438 (621)
.++||.||.|.|||-|++.+-.+ ..+-+ ..+. .+-++ ..|++ .++...+|.-.-.+|.|-.||||.+|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg-hvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG-HVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh-hhccccccchhhhhhhhccCCCceEe
Confidence 49999999999999999998665 11111 1111 11111 11343 33444567667788999999999999
Q ss_pred ecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCC
Q psy11213 439 IDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485 (621)
Q Consensus 439 IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np 485 (621)
+|||..+..+.|..|+.++|+..+-- -|-.....+++.+||.+-.
T Consensus 288 ldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtvr 332 (531)
T COG4650 288 LDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred hHhhhhcCccHHHHHHHHHHhhccCC--CCCccccccchHHhhhhHH
Confidence 99999999999999999999876543 3555566777888887643
No 210
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.95 E-value=9.1e-05 Score=80.01 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=73.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC---
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--- 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--- 446 (621)
.|++=.||.|||||.+-+ +++|-+...+|...|.+.|.. +..+| +.|.+.. --++++||+..++
T Consensus 209 ~NliELgPrGTGKS~vy~---eiSp~~~liSGG~~T~A~LFy----n~~~~----~~GlV~~--~D~VafDEv~~i~f~d 275 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYK---EISPYGILISGGQVTVAKLFY----NMSTG----QIGLVGR--WDVVAFDEVAGIKFKD 275 (457)
T ss_pred cceEEEcCCCCCceeehh---hcCcccEEEECCCcchHHhee----eccCC----cceeeee--ccEEEEEeccCcccCC
Confidence 599999999999999965 556778888888777776664 33344 3454443 4689999998876
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
++....|-..||++..+..+ .+..+.++++-..|..
T Consensus 276 ~d~i~imK~YMesG~fsRG~----~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 276 KDEIQIMKDYMESGSFSRGK----EEINADASMVFVGNIN 311 (457)
T ss_pred hHHHHHHHHHHhccceeecc----cccccceeEEEEcCcC
Confidence 34446777789999999854 2667778888888865
No 211
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.89 E-value=1.4e-05 Score=84.03 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=69.8
Q ss_pred cc-EEEeCCCCcchhHHHHHHHhhccccEEe---------------cCCCCccccceEEEeecCc-cccee---eeccce
Q psy11213 370 IN-ICLMGDPGVAKSQLLSYIERLARRSQYT---------------TGRGSSGVGLTAAVMKDPI-TNEMV---LEGGAL 429 (621)
Q Consensus 370 i~-vLL~G~PGtGKS~ll~~ia~~~pr~~~~---------------~g~~~s~~gLta~~~~~~~-~g~~~---l~~Gal 429 (621)
.| +||.||||+|||+++.++++.+...... .|....-..++++..+... .-+-+ .+....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 47 9999999999999999999875421100 0111111112222221110 00000 000001
Q ss_pred e--ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 430 V--LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 430 v--lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
. .+..-|++|||+|.|+.+..++++..||+. +.++.+|-++|-.. .+.+++.
T Consensus 104 ~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~~~~~~il~~n~~~-------------~il~tI~ 157 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------PKNTRFILITNDPS-------------KILPTIR 157 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CCCeEEEEEcCChh-------------hccchhh
Confidence 1 123469999999999999999999999874 34566777777331 5777999
Q ss_pred cccc
Q psy11213 508 SRFD 511 (621)
Q Consensus 508 sRFD 511 (621)
||+-
T Consensus 158 SRc~ 161 (325)
T COG0470 158 SRCQ 161 (325)
T ss_pred hcce
Confidence 9993
No 212
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.88 E-value=4.7e-05 Score=84.49 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=71.4
Q ss_pred ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-CCCCCCCCCcccccCCCH
Q psy11213 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-YGRYNPKRSIEQNIQLPA 504 (621)
Q Consensus 426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~~~~~~~~L~~ 504 (621)
.|+|..|++|++=+=|+-|.+.+...-|+.+-+++.+.- .+....++.+-.|||.+|-. +.+|. .| .-.+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E~~~F~------~n-k~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESEWQTFR------NN-KNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHHHHHHh------cC-ccch
Confidence 589999998887777999999999999999998888754 24445678888999999975 22222 11 3468
Q ss_pred hHhccccEEEEecCC-CChHHHHHHHHHHHhh
Q psy11213 505 ALLSRFDLLWLIQDK-PDRDNDLKLAQHITYV 535 (621)
Q Consensus 505 aLlsRFDli~~~~d~-~d~~~d~~ia~~il~~ 535 (621)
||+||. +.+-+++ ..-.++.+|.+.+++.
T Consensus 319 A~~DRi--~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 319 AFLDRI--YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhhceE--EEEeCCccCChhHHHHHHHHHhcC
Confidence 999998 3333333 3445677788877754
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.88 E-value=0.00012 Score=75.00 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++|+|+||+|||++++.+++.++
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999998865
No 214
>KOG0730|consensus
Probab=97.88 E-value=1.7e-05 Score=88.07 Aligned_cols=135 Identities=25% Similarity=0.275 Sum_probs=85.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEec-CC--CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTT-GR--GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~--~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
-++|++||||||||.+++++++...--.+.. |. .....|-+.+..+. .+ .-+.-.+-..+|+|||+|.+-
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~------~f-~~a~k~~~psii~IdEld~l~ 291 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRK------AF-AEALKFQVPSIIFIDELDALC 291 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHH------HH-HHHhccCCCeeEeHHhHhhhC
Confidence 4799999999999999999999854222221 11 01111111111110 00 001111126899999999876
Q ss_pred h----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-cccEEEE
Q psy11213 447 D----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-RFDLLWL 515 (621)
Q Consensus 447 ~----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-RFDli~~ 515 (621)
+ ..-..|+..|+.-. -.....||||+|... .|.+++.+ ||| .-+
T Consensus 292 p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRfd-~ev 346 (693)
T KOG0730|consen 292 PKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRFD-REV 346 (693)
T ss_pred CcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCCc-cee
Confidence 4 22346677775421 123467889988763 58889886 999 667
Q ss_pred ecCCCChHHHHHHHHHHHhhh
Q psy11213 516 IQDKPDRDNDLKLAQHITYVH 536 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il~~~ 536 (621)
.+..|+......|++...+.+
T Consensus 347 ~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred eecCCCchhHHHHHHHHHHhc
Confidence 778999999999999887654
No 215
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.7e-05 Score=79.61 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=108.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc------EEecCCC-CccccceEE----EeecCcccceeee-----cccee-ec
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS------QYTTGRG-SSGVGLTAA----VMKDPITNEMVLE-----GGALV-LA 432 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~-~s~~gLta~----~~~~~~~g~~~l~-----~Galv-lA 432 (621)
.|++++|+||||||..++++++.+... +|..... .+.-..... ...-+.+|.-..+ ...+. ..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 389999999999999999998874332 3332221 110000000 0011112211000 00000 01
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..-|+.+||+|.+.......|++...-.+ .+ ..++++++.+|-.. + ...|.+.+.|||-.
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~-----~~-----~~~v~vi~i~n~~~--------~--~~~ld~rv~s~l~~ 182 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPG-----EN-----KVKVSIIAVSNDDK--------F--LDYLDPRVKSSLGP 182 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHhhcc-----cc-----ceeEEEEEEeccHH--------H--HHHhhhhhhhccCc
Confidence 12378999999998887666666654221 11 56788999999762 1 22467777777754
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc--C-CCCCCHHHHHHHHHHHHHHHHHhhc
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG--K-NPTVPSSLTEHIVKAYTELRKVARN 589 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~--~-~p~ls~~a~~~l~~~y~~lR~~~~~ 589 (621)
.-+.+++.+ .++|+.++..-.. . ...+++.+.+++.....+ ..
T Consensus 183 ~~I~F~pY~-----------------------------a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~-----~~ 228 (366)
T COG1474 183 SEIVFPPYT-----------------------------AEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA-----ES 228 (366)
T ss_pred ceeeeCCCC-----------------------------HHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH-----cC
Confidence 444444444 4444444433211 2 566777777777654321 11
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 590 SRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 590 ~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
-..|....++|.|--.|.-+.++.|+
T Consensus 229 ------GDAR~aidilr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 229 ------GDARKAIDILRRAGEIAEREGSRKVS 254 (366)
T ss_pred ------ccHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 15788888888888888877777664
No 216
>KOG1051|consensus
Probab=97.85 E-value=9.9e-05 Score=85.92 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=73.5
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE---EecCCCC--ccccceEEE--eecCcccceeeeccceeecCCCeeEec
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRGS--SGVGLTAAV--MKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~~--s~~gLta~~--~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
++.-+|+.||.|+|||.|++++|..+-.+. ..-+... ....+.++. .+....|. .-.+++-.-...|+++|
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfd 667 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFE 667 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEe
Confidence 567899999999999999999999853211 0001100 000011100 00000110 01123333356799999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
||+|+.+++++.|+++|+.|.++-+ .|....+. ++.||+|+|-.
T Consensus 668 eIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~k-N~I~IMTsn~~ 711 (898)
T KOG1051|consen 668 EIEKAHPDVLNILLQLLDRGRLTDS-HGREVDFK-NAIFIMTSNVG 711 (898)
T ss_pred chhhcCHHHHHHHHHHHhcCccccC-CCcEeecc-ceEEEEecccc
Confidence 9999999999999999999999876 46666654 38999999864
No 217
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=3.2e-05 Score=81.90 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=46.3
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
..-|++|||+++|+.+..++|+..||+- |.. +.|+.|.||. .|.++++||+-
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~ll~TI~SRc~ 158 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS--------------RLLPTIKSRCQ 158 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh--------------hCcHHHHhhce
Confidence 4569999999999999999999999972 122 3456666665 58999999993
Q ss_pred EEEEecCCCChHH
Q psy11213 512 LLWLIQDKPDRDN 524 (621)
Q Consensus 512 li~~~~d~~d~~~ 524 (621)
.+.+..++.+.
T Consensus 159 --~~~~~~~~~~~ 169 (328)
T PRK05707 159 --QQACPLPSNEE 169 (328)
T ss_pred --eeeCCCcCHHH
Confidence 34445555443
No 218
>KOG0741|consensus
Probab=97.79 E-value=3.4e-06 Score=90.87 Aligned_cols=169 Identities=20% Similarity=0.315 Sum_probs=99.2
Q ss_pred CCCCCcccceeeecccccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc--EE
Q psy11213 321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS--QY 398 (621)
Q Consensus 321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~--~~ 398 (621)
+..|-+-..+.-+.++-.+..+.|-+.++-.||-. -. .+||+||||||||.+||.+-+.+..- -.
T Consensus 221 mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H----VK---------GiLLyGPPGTGKTLiARqIGkMLNArePKI 287 (744)
T KOG0741|consen 221 MGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH----VK---------GILLYGPPGTGKTLIARQIGKMLNAREPKI 287 (744)
T ss_pred cccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc----ee---------eEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence 44466666666667777777888776666556531 11 68999999999999999998885321 11
Q ss_pred ecCC--CCccccceEEEeecC---cccceeeeccceeecCCCeeEecCCCCC-------------ChhhhhhhHhhhcce
Q psy11213 399 TTGR--GSSGVGLTAAVMKDP---ITNEMVLEGGALVLADQGICCIDEFDKL-------------PDADRTAIHEVMEQQ 460 (621)
Q Consensus 399 ~~g~--~~s~~gLta~~~~~~---~~g~~~l~~GalvlAd~gi~~IDEidk~-------------~~~~~~~L~eame~q 460 (621)
+.|- ..-.+|-+...+++- ...+|.-.++. +.=.|+++||||.+ .+..-+.|+.-|+.
T Consensus 288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~---SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG- 363 (744)
T KOG0741|consen 288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN---SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG- 363 (744)
T ss_pred cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc---CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-
Confidence 1111 011112111111110 12233221111 01158999999862 34455677776642
Q ss_pred EEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEEecCCCChHHHHHHHH
Q psy11213 461 TISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 461 ~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~~~d~~d~~~d~~ia~ 530 (621)
+-.|| ...||+-+|... -+++|||+ ||. +-.-...||+.-..+|.+
T Consensus 364 ---------VeqLN-NILVIGMTNR~D-------------lIDEALLRPGRlE-VqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 364 ---------VEQLN-NILVIGMTNRKD-------------LIDEALLRPGRLE-VQMEISLPDEKGRLQILK 411 (744)
T ss_pred ---------HHhhh-cEEEEeccCchh-------------hHHHHhcCCCceE-EEEEEeCCCccCceEEEE
Confidence 12233 268899999873 47889997 995 555567888776665543
No 219
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.72 E-value=3.9e-05 Score=67.61 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=55.9
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh---
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA--- 448 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~--- 448 (621)
|.|.|+||+|||.+++.+++.+-+...... ... . ..+.+...-| .|- ....++++|||....+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~--~~~--v---y~~~~~~~~w---~gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT--KDS--V---YTRNPGDKFW---DGY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC--CCc--E---EeCCCccchh---hcc---CCCcEEEEeecCccccccch
Confidence 579999999999999998876443220000 000 0 0011111111 010 13578999999988754
Q ss_pred -hhhhhHhhhcceEEEEecCCeE---EecCCcceEEeecC
Q psy11213 449 -DRTAIHEVMEQQTISIAKAGIM---TRLNARVSILAAAN 484 (621)
Q Consensus 449 -~~~~L~eame~q~isi~k~gi~---~~l~ar~~viAa~N 484 (621)
....+...+.........|+.. ..+++ -.||+|+|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 5566777777666655444432 33333 36677777
No 220
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00022 Score=75.13 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=72.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--c-cce--eee---ccceeecCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--T-NEM--VLE---GGALVLADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~-g~~--~l~---~GalvlAd~gi~~IDEi 442 (621)
-.|++||+|+||+++++.+++.+-... ..+ +...+..-...+.. + .+. ..+ -.+ ..++.-|++||+.
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~---~~~-~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~a 102 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKS---QQR-EYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNS 102 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCC---CCC-CCCCeEEeccccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEech
Confidence 348999999999999999998642100 000 00001000000000 0 000 000 111 2345679999999
Q ss_pred CCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 443 DKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 443 dk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
++|+++..++|+..+|+- |.. +.|+.|.||. .+.+++.||+ ..+....++
T Consensus 103 d~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~~--------------~ll~TI~SRc--~~~~~~~~~ 153 (313)
T PRK05564 103 EKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENLE--------------QILDTIKSRC--QIYKLNRLS 153 (313)
T ss_pred hhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCcHHHHhhc--eeeeCCCcC
Confidence 999999999999999861 222 3445555664 5889999999 444455555
Q ss_pred hHHHHHH
Q psy11213 522 RDNDLKL 528 (621)
Q Consensus 522 ~~~d~~i 528 (621)
.+.-...
T Consensus 154 ~~~~~~~ 160 (313)
T PRK05564 154 KEEIEKF 160 (313)
T ss_pred HHHHHHH
Confidence 5544333
No 221
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.71 E-value=2.5e-05 Score=81.93 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=73.2
Q ss_pred ccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC-CCCCCCCCcccccCCCH
Q psy11213 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY-GRYNPKRSIEQNIQLPA 504 (621)
Q Consensus 426 ~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~-g~~~~~~~~~~~~~L~~ 504 (621)
.|.+..|++|++=+=|+-|.+.+....||.+.+++.+... |....++.+..|||.+|+.+ .+|. .+ .-.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~------~~-~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFK------NN-KNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHh------cc-ccch
Confidence 5899999999998889999999999999999999998873 33445678889999999873 2221 11 2237
Q ss_pred hHhccccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 505 ALLSRFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 505 aLlsRFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
||.||+. ++-+.-..+-..+.+|.+.++.
T Consensus 297 Af~DRi~-~I~VPY~L~~s~E~kIY~k~~~ 325 (358)
T PF08298_consen 297 AFKDRIE-VIKVPYCLRVSEEVKIYEKLIG 325 (358)
T ss_pred hhhhheE-EEeccccCCHHHHHHHHHHHhh
Confidence 9999992 3333334456677778877764
No 222
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.71 E-value=0.00012 Score=86.71 Aligned_cols=207 Identities=16% Similarity=0.136 Sum_probs=118.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh--ccccEEec---CCCCc-cc-cceEEEeecCcccceeeeccceeecCCCeeEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL--ARRSQYTT---GRGSS-GV-GLTAAVMKDPITNEMVLEGGALVLADQGICCIDEF 442 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~--~pr~~~~~---g~~~s-~~-gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEi 442 (621)
-.++++||||+|||+|.--.... .-..++.. ...+. .. -|--...+-+.+|...+-|...+ ..+|+|.|||
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDeI 1572 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDEI 1572 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeecc
Confidence 37999999999999975432211 11111111 11100 00 00001111122344444343333 3689999999
Q ss_pred CC------CChhhhhhhHhhhcceEE--EEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 443 DK------LPDADRTAIHEVMEQQTI--SIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 443 dk------~~~~~~~~L~eame~q~i--si~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
+. .++++...|...||.|-+ ++++.. .+ -++..+.+||||. +-.+.++.+..+++|= ++
T Consensus 1573 nLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~w--vT-I~~i~l~Gacnp~--------td~gRv~~~eRf~r~~--v~ 1639 (3164)
T COG5245 1573 NLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSW--VT-ICGIILYGACNPG--------TDEGRVKYYERFIRKP--VF 1639 (3164)
T ss_pred CCccccccCCCceEEeeHHHHHhcccccchhhhH--hh-hcceEEEccCCCC--------CCcccCccHHHHhcCc--eE
Confidence 84 344455566677776432 121111 11 1357889999997 2334478899999996 67
Q ss_pred EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-
Q psy11213 515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDM- 593 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~- 593 (621)
+..++|.......|.+.++... .+-.++.+ .++++....-+..|...|...+..-..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~s-----------~l~~~ef~-----------~~se~~~~aSv~ly~~~k~~~k~~lq~~ 1697 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMGS-----------YLCFDEFN-----------RLSEETMSASVELYLSSKDKTKFFLQMN 1697 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHHH-----------HHhhHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 7778999888888887554311 01112222 345566677788898888876554323
Q ss_pred CccCHHHHHHHHHHHHHHHH
Q psy11213 594 SYTSARNLLAILRLSTALAR 613 (621)
Q Consensus 594 ~~~t~R~leslirla~A~Ak 613 (621)
...+||.|..++|.-...|-
T Consensus 1698 y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1698 YGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred cccChHHHHHHHHHHHhHHh
Confidence 44689999888887665543
No 223
>KOG0729|consensus
Probab=97.71 E-value=3.4e-05 Score=76.86 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=67.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeec-CCCeeEecCCCCC---
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLA-DQGICCIDEFDKL--- 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlA-d~gi~~IDEidk~--- 445 (621)
.|||+||||||||..+|++|+.......- -.++. |....+ ..|.. +-+--.+... ..+|+|+||+|.+
T Consensus 213 gvllygppgtgktl~aravanrtdacfir-vigse---lvqkyv---gegarmvrelf~martkkaciiffdeidaigga 285 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIR-VIGSE---LVQKYV---GEGARMVRELFEMARTKKACIIFFDEIDAIGGA 285 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEe-ehhHH---HHHHHh---hhhHHHHHHHHHHhcccceEEEEeeccccccCc
Confidence 79999999999999999999874322211 00110 000000 00100 0000001111 2479999999874
Q ss_pred --------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEEEE
Q psy11213 446 --------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLLWL 515 (621)
Q Consensus 446 --------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli~~ 515 (621)
..+.|..++|.+.|-. |-. -....-|+.|+|... .|.++||+ |.| .-+
T Consensus 286 rfddg~ggdnevqrtmleli~qld------gfd--prgnikvlmatnrpd-------------tldpallrpgrld-rkv 343 (435)
T KOG0729|consen 286 RFDDGAGGDNEVQRTMLELINQLD------GFD--PRGNIKVLMATNRPD-------------TLDPALLRPGRLD-RKV 343 (435)
T ss_pred cccCCCCCcHHHHHHHHHHHHhcc------CCC--CCCCeEEEeecCCCC-------------CcCHhhcCCcccc-cce
Confidence 3456788889887632 211 112256788888652 47777775 665 333
Q ss_pred ecCCCChH
Q psy11213 516 IQDKPDRD 523 (621)
Q Consensus 516 ~~d~~d~~ 523 (621)
-...||-+
T Consensus 344 ef~lpdle 351 (435)
T KOG0729|consen 344 EFGLPDLE 351 (435)
T ss_pred eccCCccc
Confidence 33444443
No 224
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0001 Score=78.29 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=47.4
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhcc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsR 509 (621)
.++..|++|||+++|+.+..++|+..||+- |..+ .|+.|.|+. .|.+++.||
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~~~~~Il~t~~~~--------------~ll~TIrSR 160 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SGGTTAILLTENKH--------------QILPTILSR 160 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CCCceEEEEeCChH--------------hCcHHHHhh
Confidence 345679999999999999999999999962 2233 344555554 588999999
Q ss_pred ccEEEEecCCCChHH
Q psy11213 510 FDLLWLIQDKPDRDN 524 (621)
Q Consensus 510 FDli~~~~d~~d~~~ 524 (621)
+ ..+....++.++
T Consensus 161 c--~~i~~~~~~~~~ 173 (329)
T PRK08058 161 C--QVVEFRPLPPES 173 (329)
T ss_pred c--eeeeCCCCCHHH
Confidence 9 455555555544
No 225
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=3.6e-05 Score=82.18 Aligned_cols=68 Identities=26% Similarity=0.267 Sum_probs=49.7
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
-|++|||++.|+....++|+..||+- +.+ ..|+.|.+|. .+.+++.||+ .
T Consensus 143 rVviIDeAd~l~~~aanaLLk~LEEp-------------p~~~~fiLit~~~~--------------~llptIrSRc--~ 193 (351)
T PRK09112 143 RIVIIDPADDMNRNAANAILKTLEEP-------------PARALFILISHSSG--------------RLLPTIRSRC--Q 193 (351)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhcC-------------CCCceEEEEECChh--------------hccHHHHhhc--c
Confidence 49999999999999999999999862 222 3344555554 4679999999 4
Q ss_pred EEecCCCChHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQH 531 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~ 531 (621)
.+....++.+.-..+.++
T Consensus 194 ~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 194 PISLKPLDDDELKKALSH 211 (351)
T ss_pred EEEecCCCHHHHHHHHHH
Confidence 555566776666666554
No 226
>PRK06526 transposase; Provisional
Probab=97.63 E-value=6.1e-06 Score=84.15 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=62.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC--hh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--DA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--~~ 448 (621)
|++|+||||||||.|+.+++..+...-+..... +...+..........|.. ....--+..-.+++|||++... +.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHHHHHHHhcCcH--HHHHHHhccCCEEEEcccccCCCCHH
Confidence 899999999999999999987643211110000 000000000000000100 0000012334789999999864 55
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.+..|++.++...- +.++|.|+|-..+.|.... +.-.+..+++||.
T Consensus 177 ~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w~~~~---~d~~~a~ai~dRl 222 (254)
T PRK06526 177 AANLFFQLVSSRYE-------------RASLIVTSNKPFGRWGEVF---GDDVVAAAMIDRL 222 (254)
T ss_pred HHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHHHHHc---CChHHHHHHHHHH
Confidence 56678888865321 1257778887654443111 1112445667775
No 227
>PRK08181 transposase; Validated
Probab=97.60 E-value=7.8e-06 Score=83.94 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=63.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
|++|+||||||||.|+.+++..+.. ..|.+. ..|..........+. +..-.-.+..-.+++|||+....
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~-----~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT-----TDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH-----HHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccccc
Confidence 8999999999999999999876432 112111 001110000000010 00000012344699999998765
Q ss_pred h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
. ..+..|+++++.+. . +.++|.|+|-..+.|... .+.-.+..+++||.
T Consensus 181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~~---~~D~~~a~aildRL 230 (269)
T PRK08181 181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWNRV---FPDPAMTLAAVDRL 230 (269)
T ss_pred CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHHh---cCCccchhhHHHhh
Confidence 4 34567888887542 1 135777888765444321 11223667888886
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.57 E-value=9e-05 Score=70.42 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=38.3
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
..-|++|||+|+|+.+.+++|+..||+- |..+ .|+.|.|+. .|.+++.||+
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fiL~t~~~~--------------~il~TI~SRc 153 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFILITNNPS--------------KILPTIRSRC 153 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEEEEES-GG--------------GS-HHHHTTS
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEEEEECChH--------------HChHHHHhhc
Confidence 3469999999999999999999999972 3333 345555665 6999999999
No 229
>PRK12377 putative replication protein; Provisional
Probab=97.56 E-value=8e-06 Score=82.85 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=64.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecC-cccceeeeccceeecCCCeeEecCCC-
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGGALVLADQGICCIDEFD- 443 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~GalvlAd~gi~~IDEid- 443 (621)
.+++|.|+||||||.|+.++++.+... .|++- ..+.... +.. ..++ ....-.-.+.+-.+++|||+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~-----~~l~~~l-~~~~~~~~-~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV-----PDVMSRL-HESYDNGQ-SGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH-----HHHHHHH-HHHHhccc-hHHHHHHHhcCCCEEEEcCCCC
Confidence 389999999999999999999886431 11110 0000000 000 0010 000000012356799999994
Q ss_pred -CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 444 -KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 444 -k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
..++..+..|+++++.+. ..+..+|-|+|-....| .+ .+...++||.
T Consensus 175 ~~~s~~~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l------~~--~~~~ri~dRl 222 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAM------ST--LLGERVMDRM 222 (248)
T ss_pred CCCCHHHHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHH------HH--HhhHHHHHHH
Confidence 466777888999988653 22345677788653221 11 2556777776
No 230
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00023 Score=74.96 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=51.7
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
+...|++||+.++|+....++|+..||+- | + ..|+.|.||. .|.+++.||+
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEP-------------p-~~~fILi~~~~~--------------~Ll~TI~SRc 174 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEP-------------G-NGTLILIAPSPE--------------SLLPTIVSRC 174 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCC-------------C-CCeEEEEECChH--------------hCcHHHHhhc
Confidence 45679999999999999999999999972 1 2 3455555664 6899999999
Q ss_pred cEEEEecCCCChHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQH 531 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~ 531 (621)
..+....++.+.-......
T Consensus 175 --q~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 175 --QIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred --eEEecCCCCHHHHHHHHHH
Confidence 5555666666655555443
No 231
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00029 Score=74.23 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=47.1
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
..|++||+.++|+....++|+..||+- |.. ..|+.|.||. .|.++++||+
T Consensus 108 ~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRC-- 158 (325)
T PRK06871 108 NKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA--------------ALLPTIYSRC-- 158 (325)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH--------------hCchHHHhhc--
Confidence 459999999999999999999999973 222 4566777776 6999999999
Q ss_pred EEEecCCCChHH
Q psy11213 513 LWLIQDKPDRDN 524 (621)
Q Consensus 513 i~~~~d~~d~~~ 524 (621)
..+....++.+.
T Consensus 159 ~~~~~~~~~~~~ 170 (325)
T PRK06871 159 QTWLIHPPEEQQ 170 (325)
T ss_pred eEEeCCCCCHHH
Confidence 444455555443
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00024 Score=75.44 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
...|++||+.++|+....++|+..||+- |.+ ..|+.|.||. .|.+++.||+
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTIrSRC- 159 (334)
T PRK07993 108 GAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA--------------RLLATLRSRC- 159 (334)
T ss_pred CceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhcc-
Confidence 4569999999999999999999999972 222 4567777776 6999999999
Q ss_pred EEEEecCCCChHH
Q psy11213 512 LLWLIQDKPDRDN 524 (621)
Q Consensus 512 li~~~~d~~d~~~ 524 (621)
..+....++.+.
T Consensus 160 -q~~~~~~~~~~~ 171 (334)
T PRK07993 160 -RLHYLAPPPEQY 171 (334)
T ss_pred -ccccCCCCCHHH
Confidence 344555555444
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.00088 Score=66.34 Aligned_cols=144 Identities=23% Similarity=0.239 Sum_probs=79.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Chhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PDAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~~~ 449 (621)
||||.|-.|||||+|.|++..... +.+.. |. -+.++....--.+..-.-....+=|+|+|++.-= .++.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~------~~glr---LV-EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~ 156 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYA------DEGLR---LV-EVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDA 156 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHH------hcCCe---EE-EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchH
Confidence 999999999999999999876631 11110 11 1111110000000000001223568999998543 3334
Q ss_pred hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC---CCCCCCCCcc------cccCCCHhHhccccEEEEecCCC
Q psy11213 450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY---GRYNPKRSIE------QNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~---g~~~~~~~~~------~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
-.+|-.+|| |....-|+++.+.||+|... ..+..+.... +.++=.-+|-+||. ..+...++
T Consensus 157 yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFG-LwL~F~~~ 226 (287)
T COG2607 157 YKALKSALE---------GGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFG-LWLSFYPC 226 (287)
T ss_pred HHHHHHHhc---------CCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcc-eeecccCC
Confidence 456666775 44455688999999999751 1121111111 11111125678996 56666777
Q ss_pred ChHHHHHHHHHHHh
Q psy11213 521 DRDNDLKLAQHITY 534 (621)
Q Consensus 521 d~~~d~~ia~~il~ 534 (621)
+.++-.+|..|...
T Consensus 227 ~Q~~YL~~V~~~a~ 240 (287)
T COG2607 227 DQDEYLKIVDHYAK 240 (287)
T ss_pred CHHHHHHHHHHHHH
Confidence 87777788777764
No 234
>KOG1942|consensus
Probab=97.50 E-value=0.00089 Score=67.84 Aligned_cols=129 Identities=21% Similarity=0.219 Sum_probs=82.5
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
.||+||||++.++-+--+.||.++|+.- .-.||-|+|..-.--........-..+|+.||||. +|
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 5899999999999999999999999732 12456666653111111122334457999999998 44
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTVPSSLTEHIVKAYTELRKVARNSRD 592 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~-~~p~ls~~a~~~l~~~y~~lR~~~~~~~~ 592 (621)
.-...+ +.+.+|++|..-.+ .+..+++++.+.+.+.
T Consensus 362 irt~~y------------------------------~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~------------- 398 (456)
T KOG1942|consen 362 IRTLPY------------------------------DEEEIRQIIKIRAQVEGLQVEEEALDLLAEI------------- 398 (456)
T ss_pred EeeccC------------------------------CHHHHHHHHHHHHhhhcceecHHHHHHHHhh-------------
Confidence 444333 33334444432222 2567788888877653
Q ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 593 MSYTSARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 593 ~~~~t~R~leslirla~A~Akl~lr~~V 620 (621)
....|.|....|+-=+--.|++++++.|
T Consensus 399 gt~tsLRy~vqLl~p~~~~ak~~g~~~i 426 (456)
T KOG1942|consen 399 GTSTSLRYAVQLLTPASILAKTNGRKEI 426 (456)
T ss_pred ccchhHHHHHHhcCHHHHHHHHcCCcee
Confidence 2235677777777777778888888654
No 235
>KOG0990|consensus
Probab=97.49 E-value=0.00011 Score=75.27 Aligned_cols=135 Identities=18% Similarity=0.139 Sum_probs=79.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-----ccceeeecc-ceee--cCCCeeEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-----TNEMVLEGG-ALVL--ADQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-----~g~~~l~~G-alvl--Ad~gi~~IDE 441 (621)
-|.|++||||||||....+.+..+...- +.++--..|.++..++.. ...+...-+ .+.. +-=..+++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPH---PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCC---CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 3999999999999999998888865531 111001112222111110 000100000 0000 1124789999
Q ss_pred CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
.|.|..+.|++|..+.|+-+ +++.+.--+|+.. .+.+++.||| ..+-..+.+
T Consensus 140 ADaMT~~AQnALRRviek~t-------------~n~rF~ii~n~~~-------------ki~pa~qsRc--trfrf~pl~ 191 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEKYT-------------ANTRFATISNPPQ-------------KIHPAQQSRC--TRFRFAPLT 191 (360)
T ss_pred hhHhhHHHHHHHHHHHHHhc-------------cceEEEEeccChh-------------hcCchhhccc--ccCCCCCCC
Confidence 99999999999998666533 2333334457762 5789999999 444445556
Q ss_pred hHHHHHHHHHHHhh
Q psy11213 522 RDNDLKLAQHITYV 535 (621)
Q Consensus 522 ~~~d~~ia~~il~~ 535 (621)
...+.....|+...
T Consensus 192 ~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 192 MAQQTERQSHIRES 205 (360)
T ss_pred hhhhhhHHHHHHhc
Confidence 66666777777653
No 236
>KOG0732|consensus
Probab=97.46 E-value=0.0003 Score=82.68 Aligned_cols=151 Identities=22% Similarity=0.316 Sum_probs=86.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcccceeeecc----ce-eec---CCCeeE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPITNEMVLEGG----AL-VLA---DQGICC 438 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~g~~~l~~G----al-vlA---d~gi~~ 438 (621)
.||+.|+||||||..+++++...++.. |-..++.- --+.|+.++- .| --| .-.|+|
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD------------~lskwvgEaERqlrllFeeA~k~qPSIIf 368 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD------------CLSKWVGEAERQLRLLFEEAQKTQPSIIF 368 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch------------hhccccCcHHHHHHHHHHHHhccCceEEe
Confidence 599999999999999999998866532 11111110 0123433221 00 011 247999
Q ss_pred ecCCCCCCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 439 IDEFDKLPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 439 IDEidk~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
.||||-+.+ .+.+.|+..|. |... ..++.||+|+|... .+.+||.
T Consensus 369 fdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Glds--RgqVvvigATnRpd-------------a~dpaLR 424 (1080)
T KOG0732|consen 369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLDS--RGQVVVIGATNRPD-------------AIDPALR 424 (1080)
T ss_pred ccccccccccccchHHHhhhhHHHHHHHhcc---------CCCC--CCceEEEcccCCcc-------------ccchhhc
Confidence 999995433 23345555553 2111 12478999999773 4788885
Q ss_pred c--cccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCC----------CCCCCCHHHHHHHHHHHH
Q psy11213 508 S--RFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPT----------ELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 508 s--RFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~----------~~~~i~~~~lr~~i~~ar 562 (621)
+ ||| .-+....|+.+...+|. ..|...+.++. ....+-..+||.++..|.
T Consensus 425 RPgrfd-ref~f~lp~~~ar~~Il----~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 425 RPGRFD-REFYFPLPDVDARAKIL----DIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred CCcccc-eeEeeeCCchHHHHHHH----HHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 4 898 44455667766655544 44544443321 123345556888877663
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0004 Score=73.13 Aligned_cols=62 Identities=26% Similarity=0.327 Sum_probs=45.9
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
.-|++||+.|+|+....++|+..||+- |.++ .|+.|.||. .|.+++.||+
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~--------------~lLpTIrSRC-- 164 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA--------------RLPATIRSRC-- 164 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh--------------hCchHHHhhh--
Confidence 359999999999999999999999972 3344 455555565 5899999999
Q ss_pred EEEecCCCChHH
Q psy11213 513 LWLIQDKPDRDN 524 (621)
Q Consensus 513 i~~~~d~~d~~~ 524 (621)
..+....|+.++
T Consensus 165 q~i~~~~~~~~~ 176 (319)
T PRK08769 165 QRLEFKLPPAHE 176 (319)
T ss_pred eEeeCCCcCHHH
Confidence 444445555543
No 238
>KOG2035|consensus
Probab=97.37 E-value=0.00046 Score=69.56 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=59.5
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
.++.|.|.|++..+.|.+|...||.= ...|.+|-.+|... .+-+|+.||+ ++
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S-------------riIepIrSRC--l~ 180 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS-------------RIIEPIRSRC--LF 180 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc-------------cchhHHhhhe--eE
Confidence 58999999999999999999999852 23478888889773 6889999999 77
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+-..-|+.++-..+...++.
T Consensus 181 iRvpaps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 181 IRVPAPSDEEITSVLSKVLK 200 (351)
T ss_pred EeCCCCCHHHHHHHHHHHHH
Confidence 77788888877777777765
No 239
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=3.9e-05 Score=78.97 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=56.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecC--cccceeeeccce-eecCCCeeEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDP--ITNEMVLEGGAL-VLADQGICCIDEF 442 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~--~~g~~~l~~Gal-vlAd~gi~~IDEi 442 (621)
..++|+|+||||||.|+.++++.+-. .+|.+.. .+.... +.. ..+... +...+ .+.+..+++|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~-----~ll~~i-~~~~~~~~~~~-~~~~~~~l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP-----QLLNRI-KSTYKSSGKED-ENEIIRSLVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-----HHHHHH-HHHHhcccccc-HHHHHHHhcCCCEEEEecc
Confidence 46999999999999999999887532 1222110 010000 000 000000 00001 1335579999999
Q ss_pred --CCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 443 --DKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 443 --dk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
++..+..+..|+++++.+. .....+|.|+|-.
T Consensus 188 g~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 5577777888988887642 1223578888864
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.00061 Score=72.37 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
.-|++||+.|+|+....++|+..||+- |.. +.|+.|.||. .|.++++||+
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRc-- 183 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRC-- 183 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcC--
Confidence 359999999999999999999999962 223 3566677776 6999999999
Q ss_pred EEEecCCCChHH
Q psy11213 513 LWLIQDKPDRDN 524 (621)
Q Consensus 513 i~~~~d~~d~~~ 524 (621)
..+.+..++.+.
T Consensus 184 q~i~~~~~~~~~ 195 (342)
T PRK06964 184 RQFPMTVPAPEA 195 (342)
T ss_pred EEEEecCCCHHH
Confidence 344444555443
No 241
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.35 E-value=0.00098 Score=75.04 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=67.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC---
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP--- 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~--- 446 (621)
.|++=.||.|||||.+-+ +++|.+...+|...|.+.|+. +..+|. .|.+-+ --++++||+..+.
T Consensus 217 ~Nl~ELgPrgTGKS~~y~---eiSp~~~liSGG~~T~A~LFy----n~~~~~----~GlVg~--~D~VaFDEva~i~f~d 283 (675)
T TIGR02653 217 YNLCELGPRGTGKSHVYK---ECSPNSILMSGGQTTVANLFY----NMSTRQ----IGLVGM--WDVVAFDEVAGIEFKD 283 (675)
T ss_pred cceEEECCCCCCcceeee---ccCCceEEEECCccchhHeeE----EcCCCc----eeEEee--ccEEEEeeccccccCC
Confidence 599999999999999977 677888999987777666664 333443 343332 4689999997743
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecC
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAAN 484 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~N 484 (621)
++..+.|-..|+.+.++..+ .+..+.++++--.|
T Consensus 284 ~d~v~imK~YM~sG~FsRG~----~~~~a~as~vfvGN 317 (675)
T TIGR02653 284 KDGVQIMKDYMASGSFARGK----ESIEGKASIVFVGN 317 (675)
T ss_pred HHHHHHHHHHhhcCcccccc----cccccceeEEEEcc
Confidence 33445666779999988743 23445556555444
No 242
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.00046 Score=74.12 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=47.3
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
-|++|||++.|+....++|+..+|+- +.++ .|+.|.||. .+.+++.||+ .
T Consensus 143 kVviIDead~m~~~aanaLLK~LEep-------------p~~~~~IL~t~~~~--------------~llpti~SRc--~ 193 (365)
T PRK07471 143 RVVIVDTADEMNANAANALLKVLEEP-------------PARSLFLLVSHAPA--------------RLLPTIRSRC--R 193 (365)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCch--------------hchHHhhccc--e
Confidence 49999999999999999999999862 2223 445555554 4678999999 4
Q ss_pred EEecCCCChHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~ 530 (621)
.+.+..++.+.-...+.
T Consensus 194 ~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 194 KLRLRPLAPEDVIDALA 210 (365)
T ss_pred EEECCCCCHHHHHHHHH
Confidence 44555665555544444
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.00033 Score=74.09 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=46.5
Q ss_pred cCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 432 ADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 432 Ad~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
+...|++||+++.|++..+++|+..||+.. . ..+.|+.|.|+. .+++++.||+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----~-------~~~~Ilvth~~~--------------~ll~ti~SRc- 164 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-----P-------QVVFLLVSHAAD--------------KVLPTIKSRC- 164 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-----C-------CCEEEEEeCChH--------------hChHHHHHHh-
Confidence 345699999999999999999999999741 1 123566666665 5889999999
Q ss_pred EEEEecCCCChHH
Q psy11213 512 LLWLIQDKPDRDN 524 (621)
Q Consensus 512 li~~~~d~~d~~~ 524 (621)
..+....++.+.
T Consensus 165 -~~~~~~~~~~~~ 176 (325)
T PRK08699 165 -RKMVLPAPSHEE 176 (325)
T ss_pred -hhhcCCCCCHHH
Confidence 333344454443
No 244
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.0017 Score=60.68 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=22.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+.+.+.|+||+|||+++..++..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 47899999999999999999976543
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=97.24 E-value=2.5e-05 Score=79.97 Aligned_cols=117 Identities=23% Similarity=0.400 Sum_probs=61.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceEEEeecCcccce--eeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTAAVMKDPITNEM--VLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta~~~~~~~~g~~--~l~~GalvlAd~gi~~IDEidk 444 (621)
|++|+||||+|||+|+.+++..+... + |.+.. .+..........+.+ .+.. . .....+++|||+..
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~-----~l~~~l~~a~~~~~~~~~~~~-~--~~~~dlLiiDdlg~ 175 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA-----DLLLQLSTAQRQGRYKTTLQR-G--VMAPRLLIIDEIGY 175 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH-----HHHHHHHHHHHCCcHHHHHHH-H--hcCCCEEEEccccc
Confidence 89999999999999999997664321 1 11100 010000000000110 0100 0 12346999999987
Q ss_pred CC--hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 445 LP--DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 445 ~~--~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.. ......|+++++... . +.++|.|+|...+.|... +.+.-.+..+++||.
T Consensus 176 ~~~~~~~~~~lf~li~~r~------------~-~~s~iiTsn~~~~~w~~~--~~~d~~~~~ai~dRl 228 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRY------------E-KGSMILTSNLPFGQWDQT--FAGDAALTSAMLDRL 228 (259)
T ss_pred CCCChHHHHHHHHHHHHHH------------h-cCcEEEecCCCHHHHHHH--hcCchhHHHHHHHHH
Confidence 43 344456888876532 0 124677888775544321 101223556777775
No 246
>KOG0736|consensus
Probab=97.23 E-value=0.00098 Score=75.39 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=93.6
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc-------ccceeeeccceeecCCCeeEec
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI-------TNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~-------~g~~~l~~GalvlAd~gi~~ID 440 (621)
...-+||-|+||+|||++.+++|+.+..-++...-.+ +++....... .......+-.+.+++-.++-||
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~e----l~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYE----LVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID 505 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHH----HhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec
Confidence 4568999999999999999999999888776543211 1111110000 0111234556666666777777
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
-..-..-.....|+..|+. ... ..-..+..++||++... ++|+.+.+-| +.-+..+.+
T Consensus 506 ~dgged~rl~~~i~~~ls~---e~~-----~~~~~~~ivv~t~~s~~-------------~lp~~i~~~f-~~ei~~~~l 563 (953)
T KOG0736|consen 506 QDGGEDARLLKVIRHLLSN---EDF-----KFSCPPVIVVATTSSIE-------------DLPADIQSLF-LHEIEVPAL 563 (953)
T ss_pred CCCchhHHHHHHHHHHHhc---ccc-----cCCCCceEEEEeccccc-------------cCCHHHHHhh-hhhccCCCC
Confidence 6663333334555555541 111 11123478899998874 6999999988 677888999
Q ss_pred ChHHHHHHHHHHHhhhc
Q psy11213 521 DRDNDLKLAQHITYVHK 537 (621)
Q Consensus 521 d~~~d~~ia~~il~~~~ 537 (621)
++++..++.+.+++.+.
T Consensus 564 se~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLP 580 (953)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998876553
No 247
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.22 E-value=0.00066 Score=64.91 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=47.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCC--CCcccc------------ceEEEe--ecCcccceeee---
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGR--GSSGVG------------LTAAVM--KDPITNEMVLE--- 425 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~--~~s~~g------------Lta~~~--~~~~~g~~~l~--- 425 (621)
|++|.|+||+|||++++.+.+.+. .+++|... +....| ..+... ..+..|.|...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 799999999999999999888762 23444221 111111 111111 00112443321
Q ss_pred ---cc--ceee--cCCCeeEecCCCCC---ChhhhhhhHhhhcce
Q psy11213 426 ---GG--ALVL--ADQGICCIDEFDKL---PDADRTAIHEVMEQQ 460 (621)
Q Consensus 426 ---~G--alvl--Ad~gi~~IDEidk~---~~~~~~~L~eame~q 460 (621)
.| +|-. .+..+++||||.+| .+.-+.++.++|+..
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~ 125 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSN 125 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCC
Confidence 11 2222 36679999999886 455677888888743
No 248
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0023 Score=69.01 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=91.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc------ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR------RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p------r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
+++|+|+.|.|||.|++++...+- +.+|.+.......-.. ..++....+|. ... +-.++|||+++.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~--a~~~~~~~~Fk----~~y--~~dlllIDDiq~ 186 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK--ALRDNEMEKFK----EKY--SLDLLLIDDIQF 186 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH--HHHhhhHHHHH----Hhh--ccCeeeechHhH
Confidence 899999999999999999987632 1122211110000000 00000000000 000 246899999988
Q ss_pred CChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE-EEecCCCC
Q psy11213 445 LPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL-WLIQDKPD 521 (621)
Q Consensus 445 ~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli-~~~~d~~d 521 (621)
+..+. +..+....+.=. -+.+ .|+.|+.... .+-..+.+.|.|||.-- .+-...||
T Consensus 187 l~gk~~~qeefFh~FN~l~-----------~~~k-qIvltsdr~P---------~~l~~~~~rL~SR~~~Gl~~~I~~Pd 245 (408)
T COG0593 187 LAGKERTQEEFFHTFNALL-----------ENGK-QIVLTSDRPP---------KELNGLEDRLRSRLEWGLVVEIEPPD 245 (408)
T ss_pred hcCChhHHHHHHHHHHHHH-----------hcCC-EEEEEcCCCc---------hhhccccHHHHHHHhceeEEeeCCCC
Confidence 65543 443333332100 0011 3444443221 11124678999999733 22234455
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHH
Q psy11213 522 RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL 601 (621)
Q Consensus 522 ~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~l 601 (621)
.+....+... .|...+..+++++.++|+.... -++|.|
T Consensus 246 ~e~r~aiL~k----------------------------ka~~~~~~i~~ev~~~la~~~~--------------~nvReL 283 (408)
T COG0593 246 DETRLAILRK----------------------------KAEDRGIEIPDEVLEFLAKRLD--------------RNVREL 283 (408)
T ss_pred HHHHHHHHHH----------------------------HHHhcCCCCCHHHHHHHHHHhh--------------ccHHHH
Confidence 4444444332 1223367888999888876421 257888
Q ss_pred HHHHHHHHHHHHhcCC
Q psy11213 602 LAILRLSTALARLRLC 617 (621)
Q Consensus 602 eslirla~A~Akl~lr 617 (621)
+.++.-.-+.|....+
T Consensus 284 egaL~~l~~~a~~~~~ 299 (408)
T COG0593 284 EGALNRLDAFALFTKR 299 (408)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 8777666666666655
No 249
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0008 Score=70.79 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=72.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE---EecCCC--------CccccceEEEeecCc-ccc-ee------eec---cc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRG--------SSGVGLTAAVMKDPI-TNE-MV------LEG---GA 428 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~--------~s~~gLta~~~~~~~-~g~-~~------l~~---Ga 428 (621)
-+||.||.|+||+.+++.+++.+--.. -.+|.= .+..++. . ..+. .|. .. +.. ..
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~--~-i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH--V-IKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE--E-EecCcCCCcCCHHHHHHHHHHHhhC
Confidence 589999999999999999988742111 011110 0000011 0 0110 010 00 000 00
Q ss_pred eeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 429 LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 429 lvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
-..+..-|++||+.++|+....++|+..+|+- |.+ ..|+.|.||. .|.+++.
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~ 156 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIV 156 (319)
T ss_pred cccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHH
Confidence 11223459999999999999999999999972 222 3556667776 6899999
Q ss_pred ccccEEEEecCCCChHH
Q psy11213 508 SRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~ 524 (621)
||+ ..+....|+.+.
T Consensus 157 SRC--q~~~~~~~~~~~ 171 (319)
T PRK06090 157 SRC--QQWVVTPPSTAQ 171 (319)
T ss_pred hcc--eeEeCCCCCHHH
Confidence 999 444555555543
No 250
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.00056 Score=67.25 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=25.3
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
|+.|.|++||||+|||+++|-+|+.+..
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 6889999999999999999999998543
No 251
>PRK06921 hypothetical protein; Provisional
Probab=97.12 E-value=8.2e-05 Score=76.49 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++|+|+||+|||.|+.++++.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999998754
No 252
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0018 Score=73.96 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=74.3
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEe--cCC----CCcc--------ccceEEEeecCcccceeeeccc----e---e
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYT--TGR----GSSG--------VGLTAAVMKDPITNEMVLEGGA----L---V 430 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~----~~s~--------~gLta~~~~~~~~g~~~l~~Ga----l---v 430 (621)
++|.||||+|||++++.+++.+...+.. ... ..+. ..+.........-.++...+.. + .
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~ 192 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDL 192 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccccccc
Confidence 8999999999999999999886543211 000 0000 0000000000000111111110 0 0
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhc-ceEEEEecCCeEEecCCcceEEeecC--CCCCCCCCCCCcccccCCCHhHh
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVME-QQTISIAKAGIMTRLNARVSILAAAN--PAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame-~q~isi~k~gi~~~l~ar~~viAa~N--p~~g~~~~~~~~~~~~~L~~aLl 507 (621)
..+.-|++||||+.+......+++++|. . .+ + ..++.+|+++| |..+.......+...--|.++++
T Consensus 193 ~~~~~IILIDEiPn~~~r~~~~lq~lLr~~---~~-e-------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLl 261 (637)
T TIGR00602 193 MTDKKIILVEDLPNQFYRDTRALHEILRWK---YV-S-------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEIL 261 (637)
T ss_pred CCceeEEEeecchhhchhhHHHHHHHHHHH---hh-c-------CCCceEEEEecCCccccccccccccchhcccCHhHh
Confidence 1234599999997766544445555554 1 00 0 12334444444 43211000111111111558999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~ 535 (621)
++.-+..+.+.+.....-.+.++.++..
T Consensus 262 s~~rv~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 262 EEPRVSNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred cccceeEEEeCCCCHHHHHHHHHHHHHh
Confidence 8554456667777777777777777754
No 253
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.95 E-value=0.00012 Score=77.44 Aligned_cols=97 Identities=16% Similarity=0.263 Sum_probs=54.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEE---eecCcccceeeeccceeecCCCeeEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAV---MKDPITNEMVLEGGALVLADQGICCIDEF 442 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~---~~~~~~g~~~l~~GalvlAd~gi~~IDEi 442 (621)
-+++|+|+||||||.|+.++++.+-+ ..|.+.. .+.... ..+. ..+ .+...-.+.+--+++||++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~-----~l~~~l~~~~~~~-~~~--~~~~~~~l~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD-----ELIEILREIRFNN-DKE--LEEVYDLLINCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH-----HHHHHHHHHHhcc-chh--HHHHHHHhccCCEEEEecc
Confidence 48999999999999999999987532 1122110 011000 0000 000 0000011224578999999
Q ss_pred CC--CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 443 DK--LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 443 dk--~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
.. .++..+..|+++++... ..+..+|.|+|-.
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~ 289 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRL------------LRQKKMIISTNLS 289 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 65 45666778888887542 1223567777754
No 254
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.91 E-value=0.0013 Score=72.63 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=25.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG 403 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~ 403 (621)
-+|+.|+||+|||+|+..++.... +..|.++..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 789999999999999998876543 346666543
No 255
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.84 E-value=0.00088 Score=65.75 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=66.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~ 449 (621)
.-++|+|+-|+|||++++.+... .|+....... .++. ...+...-++.+||++.+...+
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------------~kd~-----~~~l~~~~iveldEl~~~~k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------------DKDF-----LEQLQGKWIVELDELDGLSKKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCccccCC------------CcHH-----HHHHHHhHheeHHHHhhcchhh
Confidence 46889999999999999988433 3332211100 1111 1112334688999999999888
Q ss_pred hhhhHhhhcceEEEEec--CCeEEecCCcceEEeecCCC
Q psy11213 450 RTAIHEVMEQQTISIAK--AGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 450 ~~~L~eame~q~isi~k--~gi~~~l~ar~~viAa~Np~ 486 (621)
.+.|-..+-..+..+-+ +.....+|-+++++||+|..
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 88888888887777644 34457788889999999975
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.81 E-value=0.00044 Score=70.10 Aligned_cols=111 Identities=16% Similarity=0.283 Sum_probs=60.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---E-EecCCCCccccceEEEe---ecC-cccceeeeccceeecCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTTGRGSSGVGLTAAVM---KDP-ITNEMVLEGGALVLADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~g~~~s~~gLta~~~---~~~-~~g~~~l~~GalvlAd~gi~~IDEi 442 (621)
+++|.|+||||||.|+.+++..+... + |.+ ...+..... .+. .+.+..++. +..-.+++|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----~~~l~~~l~~~~~~~~~~~~~~l~~----l~~~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----VADIMSAMKDTFSNSETSEEQLLND----LSNVDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----HHHHHHHHHHHHhhccccHHHHHHH----hccCCEEEEeCC
Confidence 79999999999999999999876331 1 110 000110000 000 000011111 234579999999
Q ss_pred CCCChhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 443 DKLPDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 443 dk~~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
......+ ...|+++++.+. ..+..+|-|+|-....+ .+ .+...++||+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l------~~--~~g~ri~sRl 221 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEM------TK--LLGERVMDRM 221 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHH------HH--HhChHHHHHH
Confidence 8865443 446778876542 22346677788652211 11 2456667776
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.00016 Score=73.83 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=62.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc-EEecCCCCccccceEEEeecC-cccceeeecccee-ecCCCeeEecCCCC--C
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS-QYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGGALV-LADQGICCIDEFDK--L 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~Galv-lAd~gi~~IDEidk--~ 445 (621)
|++|+|+||||||.|+-++++.+-+. ..+.- .+...+... .+.. ..|. .+.-..- +..--+++|||+.. +
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f--~~~~el~~~-Lk~~~~~~~--~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLF--ITAPDLLSK-LKAAFDEGR--LEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EEHHHHHHH-HHHHHhcCc--hHHHHHHHhhcCCEEEEecccCccC
Confidence 99999999999999999998875321 10000 000000000 0000 0000 0000011 23457999999988 4
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
....++.+++++.+...+ +.. +.|+|-..+.|+.-.. ...+.++++||.
T Consensus 182 ~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~~~~~---~~~~~e~~~dRi 230 (254)
T COG1484 182 SQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWDELFG---DDALTEALLDRI 230 (254)
T ss_pred CHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHHhhcc---CchhHHHHHHHH
Confidence 444578888887765422 223 7788877554432111 111457777774
No 258
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.003 Score=67.26 Aligned_cols=34 Identities=41% Similarity=0.664 Sum_probs=25.0
Q ss_pred cEEEeCCCCcchhHHHHHHHh-hcc--ccEEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIER-LAR--RSQYTTGRGS 404 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~-~~p--r~~~~~g~~~ 404 (621)
-+|+=|+||.|||+||-.++. ++. +..|++|..+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES 131 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEES 131 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcC
Confidence 678888999999997766544 333 4678888754
No 259
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.77 E-value=0.0067 Score=64.21 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
.||+||||.+.++-+--+.|..|||...- -.||.|+|..--+ -....+..-..+|..||||+ |+
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~-irGt~~~sphGiP~DlLDRl-lI 342 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITK-IRGTDIISPHGIPLDLLDRL-LI 342 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE--BTTS-EEETT--HHHHTTE-EE
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeee-ccCccCcCCCCCCcchHhhc-EE
Confidence 48999999999999999999999997432 2466677753100 00112344457999999999 55
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL-CKGKNPTVPSSLTEHIVKAYTELRKVARNSRD 592 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~-ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~ 592 (621)
... .+ ++.+++++.+.- |+..+..++++|.++|.+.-.+
T Consensus 343 I~t-~p-----------------------------y~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~---------- 382 (398)
T PF06068_consen 343 IRT-KP-----------------------------YSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVE---------- 382 (398)
T ss_dssp EEE----------------------------------HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHH----------
T ss_pred EEC-CC-----------------------------CCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhh----------
Confidence 444 32 333444444432 3444789999999998875332
Q ss_pred CCccCHHHHHHHHHHH
Q psy11213 593 MSYTSARNLLAILRLS 608 (621)
Q Consensus 593 ~~~~t~R~leslirla 608 (621)
.|.|-...|+-.|
T Consensus 383 ---~SLRYAiqLi~~a 395 (398)
T PF06068_consen 383 ---TSLRYAIQLITPA 395 (398)
T ss_dssp ---S-HHHHHHCHHHH
T ss_pred ---ccHHHHHHhhhhh
Confidence 3677666666554
No 260
>PHA02774 E1; Provisional
Probab=96.74 E-value=0.0042 Score=69.39 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC-Chh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL-PDA 448 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~-~~~ 448 (621)
-+++|+||||||||.|+-++++.+...+.. . ... ...|.++ .+++.-++++||+..- ..-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~------f-----vN~----~s~FwLq----pl~d~ki~vlDD~t~~~w~y 495 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVIS------F-----VNS----KSHFWLQ----PLADAKIALLDDATHPCWDY 495 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEE------E-----EEC----ccccccc----hhccCCEEEEecCcchHHHH
Confidence 479999999999999999999986421110 0 000 1223333 2557789999999332 122
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
....|..+++.+.++|.+....-.--...-+|-|+|..
T Consensus 496 ~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 496 IDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred HHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 33467888888888885433221111123467788854
No 261
>KOG1969|consensus
Probab=96.61 E-value=0.0013 Score=73.96 Aligned_cols=83 Identities=31% Similarity=0.362 Sum_probs=49.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee-cC--CCeeEecCCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL-AD--QGICCIDEFDKLP 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl-Ad--~gi~~IDEidk~~ 446 (621)
--+||+||||.|||+||.-+|+.+.-++.- .++|.. =|+..+.....+. +.-. -++ || .-.++|||||-..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvE--INASDe-Rt~~~v~~kI~~a--vq~~-s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE--INASDE-RTAPMVKEKIENA--VQNH-SVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEE--eccccc-ccHHHHHHHHHHH--Hhhc-cccccCCCcceEEEecccCCc
Confidence 368999999999999999999997655533 222221 1222111111000 0000 112 22 2578899999998
Q ss_pred hhhhhhhHhhhc
Q psy11213 447 DADRTAIHEVME 458 (621)
Q Consensus 447 ~~~~~~L~eame 458 (621)
......|+..++
T Consensus 401 ~~~Vdvilslv~ 412 (877)
T KOG1969|consen 401 RAAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 262
>KOG2680|consensus
Probab=96.57 E-value=0.035 Score=56.85 Aligned_cols=102 Identities=24% Similarity=0.270 Sum_probs=62.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
-.|+.||.|-=|+..=..+.+.. -+|.-++.|-. -.||+||||.+.++-+--
T Consensus 254 lALFsGdTGEIr~EvRdqin~KV--------------------------~eWreEGKAei--vpGVLFIDEvHMLDIEcF 305 (454)
T KOG2680|consen 254 LALFSGDTGEIRSEVRDQINTKV--------------------------AEWREEGKAEI--VPGVLFIDEVHMLDIECF 305 (454)
T ss_pred EEEEeCCcccccHHHHHHHHHHH--------------------------HHHHhcCCeee--ccceEEEeeehhhhhHHH
Confidence 56888999988887655543321 12322222211 159999999999999889
Q ss_pred hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
+.|..|+|...-. .++.|+|...-+-. .-++..-..+|-.||+|. ||...
T Consensus 306 sFlNrAlE~d~~P--------------iiimaTNrgit~iR-GTn~~SphGiP~D~lDR~-lII~t 355 (454)
T KOG2680|consen 306 SFLNRALENDMAP--------------IIIMATNRGITRIR-GTNYRSPHGIPIDLLDRM-LIIST 355 (454)
T ss_pred HHHHHHhhhccCc--------------EEEEEcCCceEEee-cCCCCCCCCCcHHHhhhh-heeec
Confidence 9999999874322 35556665311100 001222246999999998 44444
No 263
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.0054 Score=63.50 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=66.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccE--EecCC--CCccccceEEEeecCccccee------eeccce---eecCCCe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQ--YTTGR--GSSGVGLTAAVMKDPITNEMV------LEGGAL---VLADQGI 436 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~--~~~g~--~~s~~gLta~~~~~~~~g~~~------l~~Gal---vlAd~gi 436 (621)
+-.|+.|++|+||..++..+++.+-... ..+.. ..+..++.- +..+..+.... +..-.- +.+..-|
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 3578999999999999999988742110 00000 000000100 00000000000 000000 1123469
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
++||+.|+|+.+..++|+..||+- |.. ..|+.|.||. .|.++++||+-
T Consensus 99 ~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~--------------~ll~TI~SRcq 147 (290)
T PRK05917 99 YIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ--------------RLPPTIRSRSL 147 (290)
T ss_pred EEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh--------------hCcHHHHhcce
Confidence 999999999999999999999972 122 4567777776 58999999993
No 264
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.55 E-value=0.00036 Score=63.06 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-+++++|+||+|||.+++.+++..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998875
No 265
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.51 E-value=0.021 Score=59.97 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=67.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
=++|+|+.|+|||++++.+.++++....+. .+...+.. .+ ...+. .-.+...-+++.||++.-.....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~~---~~~~~~~~---~~--~~~f~----~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATTA---VASLKMNE---FQ--EHRFG----LARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhccC---Ccchhhhh---cc--CCCch----hhhhcCCEEEEecCCCCCccccH
Confidence 578999999999999999999975432110 00100110 00 11111 11133455788999975433333
Q ss_pred hhhHhhhcceEEEEecCCe-EEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 451 TAIHEVMEQQTISIAKAGI-MTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi-~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
..|-.+.....+++.+.+. .......+.++.++|....- -+-+.++.+|+
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~----------~~~~~a~~RR~ 196 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRI----------RGFDGGIKRRL 196 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCcc----------CCCChhheeeE
Confidence 4555555556677644332 33445567888888865210 13467899998
No 266
>PHA02624 large T antigen; Provisional
Probab=96.27 E-value=0.0068 Score=68.04 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=67.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh-
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD- 447 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~- 447 (621)
.--++|+||||||||+|+.++++.+...+.... +++. .-.|.+. +++|.-++++|+.....-
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN-sPt~------------ks~FwL~----pl~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN-CPPD------------KLNFELG----CAIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee-CCcc------------hhHHHhh----hhhhceEEEeeeccccccc
Confidence 347999999999999999999999733222110 0100 1112222 255777888888742111
Q ss_pred ----------hhhhhhHhhhcce-EEEEecCC---eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 448 ----------ADRTAIHEVMEQQ-TISIAKAG---IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 448 ----------~~~~~L~eame~q-~isi~k~g---i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
+...-|..+++.. .|++.+.. .....|. .|-|+|.. -||..+.-||-.+
T Consensus 494 ~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~Ney--------------~iP~T~~~Rf~~~ 556 (647)
T PHA02624 494 NKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMNEY--------------LIPQTVKARFAKV 556 (647)
T ss_pred cccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeecCc--------------ccchhHHHHHHHh
Confidence 0124566667766 66664422 2223333 57788875 5999999999544
Q ss_pred EEe
Q psy11213 514 WLI 516 (621)
Q Consensus 514 ~~~ 516 (621)
+..
T Consensus 557 ~~F 559 (647)
T PHA02624 557 LDF 559 (647)
T ss_pred ccc
Confidence 333
No 267
>PRK13695 putative NTPase; Provisional
Probab=96.25 E-value=0.011 Score=56.57 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+++|.|+||+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999976653
No 268
>KOG0735|consensus
Probab=96.19 E-value=0.0022 Score=72.11 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=75.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-----EecCCCCccccceEEEeecCccc---ceeeeccceeecCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-----YTTGRGSSGVGLTAAVMKDPITN---EMVLEGGALVLADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-----~~~g~~~s~~gLta~~~~~~~~g---~~~l~~GalvlAd~gi~~IDEi 442 (621)
||||.|++|+|||.|++++++.+.... +.++.. |-+.. .+.... .|..+ ++ .-...|+++|++
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~-----l~~~~-~e~iQk~l~~vfse--~~-~~~PSiIvLDdl 503 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST-----LDGSS-LEKIQKFLNNVFSE--AL-WYAPSIIVLDDL 503 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh-----ccchh-HHHHHHHHHHHHHH--HH-hhCCcEEEEcch
Confidence 999999999999999999999865322 111111 00000 000000 00000 00 002478899999
Q ss_pred CCCChh---------hhh-hhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213 443 DKLPDA---------DRT-AIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF 510 (621)
Q Consensus 443 dk~~~~---------~~~-~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF 510 (621)
|-+-.. ... .|-..+.| .+ -+..+.+.+..+||+.|... .|++-|.| +|
T Consensus 504 d~l~~~s~~e~~q~~~~~~rla~flnq-vi-----~~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~F 564 (952)
T KOG0735|consen 504 DCLASASSNENGQDGVVSERLAAFLNQ-VI-----KIYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLF 564 (952)
T ss_pred hhhhccCcccCCcchHHHHHHHHHHHH-HH-----HHHHccCcEEEEEEechhhh-------------hcChhhcCccce
Confidence 875431 111 11111211 11 12234466688999988652 34444443 78
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhh
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~~ 535 (621)
+ +.+-...|+..+..+|..+++..
T Consensus 565 q-~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 565 Q-IVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred E-EEEecCCcchhHHHHHHHHHHHh
Confidence 6 66777889999999999988754
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.07 E-value=0.0082 Score=64.69 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=24.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG 403 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~ 403 (621)
=+|+.|+||+|||+|+..++.... +..|.++..
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 689999999999999988775532 345666543
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.02 E-value=0.0044 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|++.|+||+|||++++.+++.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68999999999999999999853
No 271
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.01 E-value=0.048 Score=61.32 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=82.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec--CCC---C--ccccceEE-Eeec------Ccccceeeec---------c
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRG---S--SGVGLTAA-VMKD------PITNEMVLEG---------G 427 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~---~--s~~gLta~-~~~~------~~~g~~~l~~---------G 427 (621)
-+||.||||+|||+.++.+|+.+...+... ... + ...+.... ...+ ..-++|.+.+ |
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 578899999999999999999965544221 111 0 00000000 0000 0112222221 1
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEee-cCCCCCCCCCC-CCcccccCCCHh
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA-ANPAYGRYNPK-RSIEQNIQLPAA 505 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa-~Np~~g~~~~~-~~~~~~~~L~~a 505 (621)
.-...++-|++|+|+..+...+...++++|.+=.-+ .+. + .+.+|.+ ++-..|.-+.. ..+...--+++.
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~---~~~---~--PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~ 198 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRS---SRC---L--PLVFIISETESLSGDNSYRSNSFTAERLFPKE 198 (519)
T ss_pred CCcCCCceEEEeeccccccchhHHHHHHHHHHHHHc---CCC---C--CEEEEEecccccCCCCcccccchhhhhccCHH
Confidence 111234679999999887666668888888752211 000 0 3444444 12111110000 111111237888
Q ss_pred HhccccEEEEecCCCChHHHHHHHHHHHhhh
Q psy11213 506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVH 536 (621)
Q Consensus 506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~ 536 (621)
++....+..+-+.+.....-++....|+...
T Consensus 199 il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 199 ILNHPGITRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHhCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence 8887766777777777766666666666544
No 272
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.01 E-value=0.0099 Score=65.83 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=24.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc-c---ccEEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA-R---RSQYTTGRG 403 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~-p---r~~~~~g~~ 403 (621)
-+|+.|+||+|||+|+..++... . +..|.++..
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 67899999999999999886643 2 345666543
No 273
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.97 E-value=0.017 Score=59.87 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
++||+||+|.|||++++...+.-|.
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCC
Confidence 8999999999999999999887554
No 274
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.95 E-value=0.006 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+++|+||+|||++++.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998765
No 275
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.025 Score=59.12 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=69.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE---EecCCCCccccceEEEeecCccccee------eec----cceeecCCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ---YTTGRGSSGVGLTAAVMKDPITNEMV------LEG----GALVLADQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~---~~~g~~~s~~gLta~~~~~~~~g~~~------l~~----GalvlAd~gi~ 437 (621)
-.||+|+.|+||+++++.+++.+-... ...+..+ .. -...+...+... +.. .+...++.-|+
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p----~n-~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kvv 94 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELP----AN-IILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKIL 94 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCC----cc-eEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEE
Confidence 456999999999999999988751100 0000000 00 000111000000 000 01111256799
Q ss_pred EecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 438 CIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
+||+.++|+....++|+..||+- |..+ .|+.|.||. .|.+++.||+ ..+-
T Consensus 95 II~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~--------------kll~TI~SRc--~~~~ 145 (299)
T PRK07132 95 IIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN--------------KVLPTIVSRC--QVFN 145 (299)
T ss_pred EEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH--------------hChHHHHhCe--EEEE
Confidence 99999999999999999999962 3333 344555664 5889999999 4555
Q ss_pred cCCCChHH
Q psy11213 517 QDKPDRDN 524 (621)
Q Consensus 517 ~d~~d~~~ 524 (621)
...++.+.
T Consensus 146 f~~l~~~~ 153 (299)
T PRK07132 146 VKEPDQQK 153 (299)
T ss_pred CCCCCHHH
Confidence 55554443
No 276
>PRK14532 adenylate kinase; Provisional
Probab=95.92 E-value=0.0074 Score=58.45 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
+|+|+|+||+|||++++.+++......+.+|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 7999999999999999999998765555444
No 277
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.86 E-value=0.019 Score=57.38 Aligned_cols=82 Identities=20% Similarity=0.104 Sum_probs=42.2
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceee---cCCCeeEecCCCCCChh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL---ADQGICCIDEFDKLPDA 448 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl---Ad~gi~~IDEidk~~~~ 448 (621)
+++.|.||+|||++++.+.+.. .+++..... ..-.+...........+.++...... .....++|||+..+++.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISPT-IELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--ccccccccc-ceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4678999999999999988873 111111110 00011111111111112222211111 23679999999999976
Q ss_pred hhhhhHhh
Q psy11213 449 DRTAIHEV 456 (621)
Q Consensus 449 ~~~~L~ea 456 (621)
....|...
T Consensus 78 ~l~~l~~~ 85 (234)
T PF01443_consen 78 YLLLLLSL 85 (234)
T ss_pred HHHHHHhh
Confidence 65554443
No 278
>PRK13947 shikimate kinase; Provisional
Probab=95.83 E-value=0.0085 Score=56.93 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=27.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
||+|+|+||+|||++++.+++.+....+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999998776665543
No 279
>PF13173 AAA_14: AAA domain
Probab=95.71 E-value=0.0054 Score=55.67 Aligned_cols=79 Identities=28% Similarity=0.301 Sum_probs=43.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc---ccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR---RSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p---r~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
.++|.|+.|+|||++++.+++... ...|..........+. +...-++..+. ......+++|||+.+++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence 689999999999999999887643 3334332221111000 00000011110 111467899999999974
Q ss_pred hhhhhhHhhhc
Q psy11213 448 ADRTAIHEVME 458 (621)
Q Consensus 448 ~~~~~L~eame 458 (621)
....+-...+
T Consensus 76 -~~~~lk~l~d 85 (128)
T PF13173_consen 76 -WEDALKFLVD 85 (128)
T ss_pred -HHHHHHHHHH
Confidence 4445544444
No 280
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=95.71 E-value=0.019 Score=64.26 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=90.7
Q ss_pred CCCccccceEEEeecCcccce-----eeeccceeecCCCeeEecCCCCCC-hhhhhhhHhhhcceEEEEecCCeEEecCC
Q psy11213 402 RGSSGVGLTAAVMKDPITNEM-----VLEGGALVLADQGICCIDEFDKLP-DADRTAIHEVMEQQTISIAKAGIMTRLNA 475 (621)
Q Consensus 402 ~~~s~~gLta~~~~~~~~g~~-----~l~~GalvlAd~gi~~IDEidk~~-~~~~~~L~eame~q~isi~k~gi~~~l~a 475 (621)
..++...|+|.+......|.+ .++||+|..|+||+++||--+-+. +.....|..++..+++.+.-.+. ..+..
T Consensus 296 ~~Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~-~~~~~ 374 (509)
T PF13654_consen 296 DNPTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEE-YGLSS 374 (509)
T ss_dssp TT--HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S----TTSG
T ss_pred CCCCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccc-cccCC
Confidence 344555577777666544543 379999999999999999998876 56789999999999999864421 11000
Q ss_pred cceEEeecCCCCCCCCCCCCcccccCC-CHhHhccccEEEEecCCCChH-----HHHHHHHHHHhhhccCCCCCCCCCCC
Q psy11213 476 RVSILAAANPAYGRYNPKRSIEQNIQL-PAALLSRFDLLWLIQDKPDRD-----NDLKLAQHITYVHKHSRQPPTELKPI 549 (621)
Q Consensus 476 r~~viAa~Np~~g~~~~~~~~~~~~~L-~~aLlsRFDli~~~~d~~d~~-----~d~~ia~~il~~~~~~~~~~~~~~~i 549 (621)
+ ..| |+|+ -+|+-++++..+..- .|....+.. +.. ......-..
T Consensus 375 -------~----------------~~l~PepI--pl~vKVILiG~~~~y~~L~~~D~dF~~lF-kv~----aef~~~~~~ 424 (509)
T PF13654_consen 375 -------T----------------VSLEPEPI--PLDVKVILIGDRELYYLLYEYDPDFYKLF-KVK----AEFDSEMPR 424 (509)
T ss_dssp -------G----------------GG-B-S-E--E---EEEEEE-TTHHHHS-HHHHHHHHHH-SEE----EE--SEEE-
T ss_pred -------C----------------CCCCCCCc--ceEEEEEEEcCHHHHHHHHHhCHHHHhCC-CEE----EEccccCCC
Confidence 0 001 1111 123334443333321 111111110 000 000112234
Q ss_pred CHHHHHHHHHHHH----cC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 550 DMSLVRRYIDLCK----GK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 550 ~~~~lr~~i~~ar----~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+.+-++.|+.+.+ +. -+.++.+|...|.++...+ ..+...+....+..|++-|-+.|+...++.|+
T Consensus 425 ~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~------~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~ 495 (509)
T PF13654_consen 425 TEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL------DQDKLSLRFSWLADLLREANYWARKEGAKVIT 495 (509)
T ss_dssp -HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC------C-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH------hCCEeCCCHHHHHHHHHHHHHHHHHhCCCccC
Confidence 5666666666654 33 5789999999999886554 12244566779999999999999999888774
No 281
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.64 E-value=0.011 Score=54.92 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|+|+||+|||++++.+++.+....+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999886554443
No 282
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.01 Score=57.32 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=26.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.|+++|+||+|||++++.+++.++-....+|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHh
Confidence 6899999999999999999999765555444
No 283
>PHA00729 NTP-binding motif containing protein
Probab=95.58 E-value=0.0091 Score=59.54 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-.|+++.|+||||||+|+..+++.+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999874
No 284
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.56 E-value=0.012 Score=55.66 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.+|+|+|+||+|||++++.+++.+....+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 48999999999999999999998755444
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.54 E-value=0.006 Score=59.80 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=45.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---c-EEecCCCCcc------ccceEEEeecCcccceee--eccceeecCCCeeE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---S-QYTTGRGSSG------VGLTAAVMKDPITNEMVL--EGGALVLADQGICC 438 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~-~~~~g~~~s~------~gLta~~~~~~~~g~~~l--~~GalvlAd~gi~~ 438 (621)
-.++.|+||||||++++.+.+.+.. . +..+..+... .|..+..+ ...-..+.. ..+........+++
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti-~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTI-HSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEH-HHHTTEECCEECCSSCC-TSTSEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhH-HHHHhcCCcccccccccCCcccEEE
Confidence 4677899999999999998776432 1 2221111100 01111111 000000000 00011134457999
Q ss_pred ecCCCCCChhhhhhhHhhhcc
Q psy11213 439 IDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 439 IDEidk~~~~~~~~L~eame~ 459 (621)
|||...++......|++....
T Consensus 99 VDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T
T ss_pred EecccccCHHHHHHHHHHHHh
Confidence 999999999888888888765
No 286
>PRK00625 shikimate kinase; Provisional
Probab=95.54 E-value=0.012 Score=56.56 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=25.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
||+|+|.||+|||++++.+++.+....+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~ 31 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDT 31 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEh
Confidence 799999999999999999999876555443
No 287
>PRK03839 putative kinase; Provisional
Probab=95.53 E-value=0.012 Score=56.58 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
.|+|+|.||+|||++++.+++.+....+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999976554443
No 288
>KOG3347|consensus
Probab=95.52 E-value=0.011 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
-|||+.|-||||||+++.++|..+.-.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~ 34 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLE 34 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCc
Confidence 399999999999999999999885433
No 289
>PRK08118 topology modulation protein; Reviewed
Probab=95.52 E-value=0.012 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
.|+++|+||+|||+|++.+++.+.-..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 589999999999999999999865443
No 290
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.50 E-value=0.0054 Score=65.77 Aligned_cols=92 Identities=14% Similarity=0.240 Sum_probs=49.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc------cccEEecCCCCccccceEEEeecC---cccceeeeccce---------eec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA------RRSQYTTGRGSSGVGLTAAVMKDP---ITNEMVLEGGAL---------VLA 432 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~------pr~~~~~g~~~s~~gLta~~~~~~---~~g~~~l~~Gal---------vlA 432 (621)
-+++.|.||||||.||-.+++.+ ....|.++..+...-+-....... ..+.....+..+ ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 47889999999999999988876 223344433221110000000000 000111111111 123
Q ss_pred CCCeeEecCCCCCChh--------hhhhhHhhhcceEE
Q psy11213 433 DQGICCIDEFDKLPDA--------DRTAIHEVMEQQTI 462 (621)
Q Consensus 433 d~gi~~IDEidk~~~~--------~~~~L~eame~q~i 462 (621)
+-.++++||..++... ..+.|.+.|....+
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv 120 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKV 120 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCE
Confidence 4589999999999872 23667777776443
No 291
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.031 Score=56.88 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=40.7
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.-|++||++++|+....++|+..+|+- |.+ ..++.|.|+. .+.+++.||+
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRC 139 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRC 139 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhhe
Confidence 469999999999999999999999972 222 3556666665 6999999998
No 292
>PRK14530 adenylate kinase; Provisional
Probab=95.40 E-value=0.015 Score=57.77 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=25.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
.+|+|+|+||+|||++++.+++.++-..+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3799999999999999999999876544433
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.37 E-value=0.016 Score=55.70 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
|+++|+||+|||++++.+++..+-..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~ 27 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 68999999999999999999865433
No 294
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.35 E-value=0.0042 Score=66.66 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.+.|.|++|+|||.|+-.....+|.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCc
Confidence 7999999999999999998888764
No 295
>PRK13949 shikimate kinase; Provisional
Probab=95.32 E-value=0.016 Score=55.36 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=24.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|+|+||+|||++++.+++.+....+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 69999999999999999999987654443
No 296
>PRK04296 thymidine kinase; Provisional
Probab=95.29 E-value=0.073 Score=51.88 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=17.1
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++++|+||+|||+++..++..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999877766554
No 297
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.18 E-value=0.013 Score=63.14 Aligned_cols=89 Identities=25% Similarity=0.264 Sum_probs=49.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc---EEecCC-CCcc----ccceEEEeec-Cc-cccee---ee---ccceeecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS---QYTTGR-GSSG----VGLTAAVMKD-PI-TNEMV---LE---GGALVLAD 433 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~-~~s~----~gLta~~~~~-~~-~g~~~---l~---~GalvlAd 433 (621)
.++++.|+.|||||.+++++...+... +..++. |..+ .|.|...... +. ..... .. .-.-.+.+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~ 102 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRK 102 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhh
Confidence 489999999999999999998776432 322221 1111 1222211111 00 00000 00 00112234
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVME 458 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame 458 (621)
-.+++|||+..++......|...|.
T Consensus 103 ~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 103 ADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred heeeecccccchhHHHHHHHHHhhh
Confidence 4699999999998887777766654
No 298
>PRK07261 topology modulation protein; Provisional
Probab=95.16 E-value=0.021 Score=54.73 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.|+++|+||+|||+|++.+++.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998774
No 299
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=95.15 E-value=0.072 Score=57.45 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=88.6
Q ss_pred CCeeEecCCCC----CCh----hhhhhhHhhhcceEEEEecCCeE-Ee-cCCcceEEeecCCCC--CCCCCCCCcccccC
Q psy11213 434 QGICCIDEFDK----LPD----ADRTAIHEVMEQQTISIAKAGIM-TR-LNARVSILAAANPAY--GRYNPKRSIEQNIQ 501 (621)
Q Consensus 434 ~gi~~IDEidk----~~~----~~~~~L~eame~q~isi~k~gi~-~~-l~ar~~viAa~Np~~--g~~~~~~~~~~~~~ 501 (621)
+..++.||+.. +.. .++..++++-+.+.+++.+.+.. .. -+.+++|++++-|.- ..+- +.....-
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~---~~~~~~~ 226 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL---SAEDPEF 226 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh---hhhcccc
Confidence 34678888754 332 56778888888888888665432 23 357799999999862 1110 0000011
Q ss_pred CCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHH-------HHHHHHHHH---c--C-CCCC
Q psy11213 502 LPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSL-------VRRYIDLCK---G--K-NPTV 568 (621)
Q Consensus 502 L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~-------lr~~i~~ar---~--~-~p~l 568 (621)
...=|++|| | |.+.+....... ........+.+. ++.+..... . . ...+
T Consensus 227 ~~~Gll~Rf-L-~~~p~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~l 288 (378)
T PF13148_consen 227 RGDGLLARF-L-FVIPDSRKGRRF----------------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLEL 288 (378)
T ss_pred cCCChHhhe-e-eeccCccccccc----------------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEec
Confidence 455789999 5 555443221110 000111112222 222333222 0 1 3478
Q ss_pred CHHHHHHHHHHHHHHHHHhhc-CCC--CCccCHHHHHHHHHHHHHHHHhc
Q psy11213 569 PSSLTEHIVKAYTELRKVARN-SRD--MSYTSARNLLAILRLSTALARLR 615 (621)
Q Consensus 569 s~~a~~~l~~~y~~lR~~~~~-~~~--~~~~t~R~leslirla~A~Akl~ 615 (621)
+++|.+...++|..++..... .+. ....-.|.-+.+.|+|--++-++
T Consensus 289 s~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~ 338 (378)
T PF13148_consen 289 SDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFE 338 (378)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999998888877532 211 11233466677777777776666
No 300
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.11 E-value=0.021 Score=55.22 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+++|+||+|||++++.+++...-..+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 48999999999999999999985444333
No 301
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.10 E-value=0.014 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 302
>PRK14531 adenylate kinase; Provisional
Probab=94.99 E-value=0.023 Score=54.90 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|+++|+||+|||++++.+++...-..+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 68999999999999999999886544333
No 303
>KOG1514|consensus
Probab=94.89 E-value=0.067 Score=60.61 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=56.7
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh-----c
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL-----S 508 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl-----s 508 (621)
..|++|||+|.+-...|..|+...+= .+.-+++..|||-+|.. +||+.+| |
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdW----------pt~~~sKLvvi~IaNTm--------------dlPEr~l~nrvsS 564 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDW----------PTLKNSKLVVIAIANTM--------------DLPERLLMNRVSS 564 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcC----------CcCCCCceEEEEecccc--------------cCHHHHhccchhh
Confidence 46999999999877777777766541 22336778999999976 4666554 6
Q ss_pred cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|.++..+.+.+.+..+..+|...-+
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhh
Confidence 9999999998888888777766444
No 304
>PRK06217 hypothetical protein; Validated
Probab=94.87 E-value=0.028 Score=54.31 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
+|+|+|.||+|||++++.+++.+....+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 6899999999999999999998754443
No 305
>PF13245 AAA_19: Part of AAA domain
Probab=94.86 E-value=0.032 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=17.1
Q ss_pred cEEEeCCCCcchh-HHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKS-QLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS-~ll~~ia~~~ 393 (621)
-+++.|+|||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555999999999 5666666664
No 306
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.86 E-value=0.025 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.3
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999885
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.86 E-value=0.028 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
++|+|+||+|||++++.+++.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999998853
No 308
>KOG1970|consensus
Probab=94.84 E-value=0.037 Score=60.97 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
--+||.||+|+|||+.++-+++.+.-.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 3688999999999999999999965543
No 309
>KOG3595|consensus
Probab=94.83 E-value=0.42 Score=60.30 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=85.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc-cccEEe-cCCCCccccceEEEeecCcccceeeeccceeec--CCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA-RRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA--DQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA--d~gi~~IDEidk~ 445 (621)
..++++|++|+|||.+........ ++.++. +....+...++..... .... ...+|...-. ..=++|+||++.-
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~-~~~~--k~~~~~~~~~~~~~~~~f~ddinmp 204 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIE-SKLD--KRRSGNYGPPLGKKLVLFVDDINMP 204 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHH-HHHH--HhcccCCCCCCCceeEEEEeccCCc
Confidence 389999999999999888765543 333222 0000000001100000 0000 0111221111 1238999999873
Q ss_pred C------hhhhhhhHhhhcceEE-EEecCCeEEecCCcceEEeecCCC-CCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 446 P------DADRTAIHEVMEQQTI-SIAKAGIMTRLNARVSILAAANPA-YGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 446 ~------~~~~~~L~eame~q~i-si~k~gi~~~l~ar~~viAa~Np~-~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
. ......++..+|.+-. ...+ +.... --++.+++|+||. .|| .++++.+++.| ..+..
T Consensus 205 ~~~~yg~q~~~~~lrq~~e~~g~~~~~~-~~~~~-i~~i~~~~a~~~~~~gr----------~~i~~r~~r~f--~~~~~ 270 (1395)
T KOG3595|consen 205 ALDKYGDQPPIELLRQMLEHGGFYDRKK-SEWVE-IENVQLVGAMNPPGGGR----------NDITERFLRHF--LIVSL 270 (1395)
T ss_pred hhhhcCCccHHHHHHHHHHhceeecccc-cceeE-EeeeEEEeecCCCCCcc----------CcccHHHHHHe--eeEee
Confidence 2 2234566666775443 3333 33333 2347899999964 444 47999999999 66677
Q ss_pred CCCChHHHHHHHHHHHhhh
Q psy11213 518 DKPDRDNDLKLAQHITYVH 536 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~~~ 536 (621)
+.|+.+.-..|-.+++..|
T Consensus 271 ~~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 271 NYPSQESLTQIFNTILTGH 289 (1395)
T ss_pred CCCChhhHHHHHHHHHhcc
Confidence 8899999999999888765
No 310
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.81 E-value=0.031 Score=53.58 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
+|+|+|++|+|||++++.+++.+....+.++
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 7999999999999999999998765554443
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.80 E-value=0.054 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+++.||.|+|||+|+|.+|.+.+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 689999999999999999999854
No 312
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.78 E-value=0.023 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-++++|+||+|||++++.+++.+.-
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999977543
No 313
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.77 E-value=0.031 Score=56.17 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=27.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
..|+|+|+||+|||++++.+++........+|.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 479999999999999999999987666665554
No 314
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.76 E-value=0.019 Score=55.42 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=53.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc-c---EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR-S---QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr-~---~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
-|++|.|+||||||.|+.++++.+-+ + .|.+- ..|..........+... .-.-.+.+-.+++|||+...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~-----~~L~~~l~~~~~~~~~~--~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA-----SDLLDELKQSRSDGSYE--ELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH-----HHHHHHHHCCHCCTTHC--HHHHHHHTSSCEEEETCTSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec-----Cceeccccccccccchh--hhcCccccccEeccccccee
Confidence 38999999999999999999876432 1 11110 00111000000011100 00011235579999999764
Q ss_pred --ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 446 --PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 446 --~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
++.....|+++++.+. .. -+.|-|+|.....|.. ..++-.+..+++||.
T Consensus 121 ~~~~~~~~~l~~ii~~R~------------~~-~~tIiTSN~~~~~l~~---~~~d~~~a~aildRl 171 (178)
T PF01695_consen 121 PLSEWEAELLFEIIDERY------------ER-KPTIITSNLSPSELEE---VLGDRALAEAILDRL 171 (178)
T ss_dssp ---HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT------------------
T ss_pred eecccccccchhhhhHhh------------cc-cCeEeeCCCchhhHhh---ccccccccccccccc
Confidence 5556778888887642 11 2455588876322211 111224677888885
No 315
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.75 E-value=0.028 Score=65.86 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=48.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc-----cEEec-CCCCccccceEEEeecCccc--ceeeecccee------ecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR-----SQYTT-GRGSSGVGLTAAVMKDPITN--EMVLEGGALV------LADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~~~~-g~~~s~~gLta~~~~~~~~g--~~~l~~Galv------lAd~gi 436 (621)
.++|.|.||||||++++.+.+.+.. .++.. ..+..+..|..+.-....|- -....++... ..+..+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 7899999999999999998776542 22221 11111100110000000000 0000111100 124579
Q ss_pred eEecCCCCCChhhhhhhHhhhcc
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~ 459 (621)
++|||..+++......|++++..
T Consensus 420 lIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 420 LIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred EEEeccccCCHHHHHHHHHhCCC
Confidence 99999999998888888887654
No 316
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.66 E-value=0.029 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
++|+|+||+|||++++.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999875
No 317
>PRK06762 hypothetical protein; Provisional
Probab=94.65 E-value=0.032 Score=52.76 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-++++|.||+|||++++.+++.++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999988743
No 318
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.029 Score=53.44 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=28.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
-||.|+|.+|+|||++.+.+|+.+....+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 489999999999999999999998877765543
No 319
>PRK10536 hypothetical protein; Provisional
Probab=94.61 E-value=0.074 Score=54.10 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVME 458 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame 458 (621)
++++++|||...+++.....++..+-
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhcC
Confidence 57899999999999988777776654
No 320
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.59 E-value=0.035 Score=53.79 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
..+.|+|++|+|||+|++.++...+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 378999999999999999999886544433
No 321
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.57 E-value=0.02 Score=67.29 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=48.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---EE-ecCCCCc------cccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---QY-TTGRGSS------GVGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~-~~g~~~s------~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
-++|.|+||||||++++.+...+... +. ..-.+.. ..|..+..+.. -...+..|.-.+.+..+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~---~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLAS---LEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHH---HHhhhccCcccCCCCcEEEEE
Confidence 57899999999999999987764321 11 1111100 11111110000 000112233334467899999
Q ss_pred CCCCCChhhhhhhHhhhc
Q psy11213 441 EFDKLPDADRTAIHEVME 458 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame 458 (621)
|+.+++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999888777777543
No 322
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.57 E-value=0.044 Score=55.80 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=30.9
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|.+..+.++-..+..+. -+.|+||.|+|||+|+|.++.+++
T Consensus 13 ~~~~il~~ls~~i~~G~---------i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 13 GGKPILDDLSFSIPKGE---------ITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCeeEEecceEEecCCc---------EEEEECCCCCCHHHHHHHHhccCC
Confidence 34555666654444444 788899999999999999999865
No 323
>PRK14526 adenylate kinase; Provisional
Probab=94.57 E-value=0.034 Score=55.20 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=25.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
+++|+|+||+|||++++.+++...-..+.+|.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~ 33 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGD 33 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecCh
Confidence 68999999999999999999876544444443
No 324
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.56 E-value=0.033 Score=55.09 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=24.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
.|+++|+||+|||++++.+++......+.+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 378999999999999999998765544443
No 325
>PRK14528 adenylate kinase; Provisional
Probab=94.52 E-value=0.036 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
++++.|+||+|||++++.+++...-..+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 68999999999999999999876544443
No 326
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.50 E-value=0.031 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
.|+|.|+||+|||++++.+++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 58999999999999999999987654
No 327
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.45 E-value=0.032 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.|+++|++|+|||+|++.++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998774
No 328
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.16 Score=54.03 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC-
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP- 446 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~- 446 (621)
|+.|++=.||.+||||.+-|- .+|.....+|...+-+.|+.... +-++|.+-+ -.++.+||.-++.
T Consensus 224 nNyN~cElGPr~TGKshvYke---vSpn~~liSGGqttvAnLFYNma--------trqiGlvg~--wDvVaFDEVagirF 290 (683)
T COG4930 224 NNYNMCELGPRQTGKSHVYKE---VSPNVRLISGGQTTVANLFYNMA--------TRQIGLVGL--WDVVAFDEVAGIRF 290 (683)
T ss_pred CCcchhhcCCCccCccceehc---cCCceEEeeCCcccHHHHHHHHh--------hccccceee--eeeeeehhhccccc
Confidence 456999999999999999774 45667777887776665653211 123343332 3578899987753
Q ss_pred --hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecC
Q psy11213 447 --DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAAN 484 (621)
Q Consensus 447 --~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~N 484 (621)
++-...|-..|+.+...-.+ ....-+|...+++--|
T Consensus 291 kdkDg~qilKDYMaSGsf~RG~--~~v~~~ASlVFvGNvn 328 (683)
T COG4930 291 KDKDGMQILKDYMASGSFERGD--KKVVSDASLVFVGNVN 328 (683)
T ss_pred cCccHHHHHHHHHhcCCccccc--ccccccceEEEEeccc
Confidence 33456778889998876522 2222334344444444
No 329
>PRK02496 adk adenylate kinase; Provisional
Probab=94.29 E-value=0.037 Score=53.39 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.+++.|+||+|||++++.+++........
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999876543433
No 330
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.28 E-value=0.03 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++++|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987753
No 331
>PLN02200 adenylate kinase family protein
Probab=94.27 E-value=0.043 Score=55.34 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.++++|+||+|||++++.+++.++-..+.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 78999999999999999999886544433
No 332
>PTZ00202 tuzin; Provisional
Probab=94.21 E-value=0.04 Score=59.84 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=55.6
Q ss_pred cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy11213 500 IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKA 579 (621)
Q Consensus 500 ~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~ 579 (621)
..+....|-|.| |.++++-+.++-..-.+|.+...... ...+.-.-+..++.+.++.+++......+-..++|.+.
T Consensus 403 lt~~~~~lprld--f~~vp~fsr~qaf~y~~h~~dal~l~--~fve~vgtns~d~del~aav~qr~vs~~~yt~~kl~ka 478 (550)
T PTZ00202 403 LTIANTLLPRLD--FYLVPNFSRSQAFAYTQHAIDALSLE--HFVDVVGTNSNDLDELLAAVRQRRVSAAEYTNQKLLKA 478 (550)
T ss_pred cchhcccCccce--eEecCCCCHHHHHHHHhhccchHHhh--HHHHhhcCCcccHHHHHHHHHhcCCCHHHHhhHHHHHH
Confidence 345667788987 55567777777777777776421100 00011112344567777777777666666677777776
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHHH
Q psy11213 580 YTELRKVARNSRDMSYTSARNLLAILRLST 609 (621)
Q Consensus 580 y~~lR~~~~~~~~~~~~t~R~leslirla~ 609 (621)
-.+++..... ++.--.++.+||+
T Consensus 479 mrql~aa~~~-------~~~lr~a~~~la~ 501 (550)
T PTZ00202 479 MRQLQAAWAG-------DPQLRAAVKRLAA 501 (550)
T ss_pred HHHHHHHhCC-------CHHHHHHHHHHhc
Confidence 4444443221 2333345566654
No 333
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.21 E-value=0.046 Score=50.15 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=24.2
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
|.+.|+||+|||++++.+++.+.-..+..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999998654444433
No 334
>PF05729 NACHT: NACHT domain
Probab=94.19 E-value=0.036 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
++|.|+||+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999988663
No 335
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.16 E-value=0.036 Score=62.63 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=23.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
++|+.|++|+|||+|+|+++.+.|-
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCcc
Confidence 8999999999999999999999874
No 336
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.07 Score=53.17 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=41.3
Q ss_pred ccccccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 337 ENTRQVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 337 ~lv~~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+-+.+..||+...+..|-..+..+. .|-++|+.|.|||+|+|.+..+.+.
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE---------~VaiIG~SGaGKSTLLR~lngl~d~ 56 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGE---------MVAIIGPSGAGKSTLLRSLNGLVDP 56 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCc---------EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4566788898888888876666666 8999999999999999999987543
No 337
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.14 E-value=0.032 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-++++.|+||+|||+|++.+...+..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999988777543
No 338
>PRK13948 shikimate kinase; Provisional
Probab=94.10 E-value=0.055 Score=52.44 Aligned_cols=31 Identities=23% Similarity=0.109 Sum_probs=27.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
+|+|+|.+|+|||++.+.+++.+...++.++
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 8999999999999999999998877665544
No 339
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.10 E-value=0.083 Score=56.34 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
=++++|||+||||.+.-.+.+.+...+.+- . .....|-++| ++|..|.+||+....-=+..
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf-~--------------Ns~ShFWLqP----L~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-V--------------NSKSHFWLQP----LADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-G-G--------------GTTSCGGGGG----GCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEe-c--------------CCCCcccccc----hhcCcEEEEcCCcccHHHHH
Confidence 688999999999999999988864333221 1 1122344444 77889999999865221111
Q ss_pred -hhhHhhhcceEEEEec---CCeEEecCCcceEEeecCCC
Q psy11213 451 -TAIHEVMEQQTISIAK---AGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 451 -~~L~eame~q~isi~k---~gi~~~l~ar~~viAa~Np~ 486 (621)
.-|..+++...|+|.. +-+...+|. +|-|+|-.
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~d 361 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNID 361 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCC
Confidence 3466778888999843 233444443 56677754
No 340
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.09 E-value=0.051 Score=53.92 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=26.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.|+++|+||+|||++++.+++...-..+..|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~ 32 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 5899999999999999999998766555544
No 341
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.04 E-value=0.054 Score=51.45 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
+++|+|.||+|||++++.+++.+....+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 789999999999999999999876555543
No 342
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.034 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|++.|.||||||++++.++..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh
Confidence 5899999999999999999843
No 343
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.2 Score=50.30 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=75.9
Q ss_pred cEEEeCCCC-cchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc---ccc-ee------eeccc---eeecCCCe
Q psy11213 371 NICLMGDPG-VAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI---TNE-MV------LEGGA---LVLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PG-tGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~---~g~-~~------l~~Ga---lvlAd~gi 436 (621)
.-|+.|+.+ +||.-++..+++.+-......|..+. +. -+..+.. .|. .. +..-. -..+..-|
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD---~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPD---YH-FIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCC---EE-EEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 679999997 99999999988875221111111110 00 0000000 000 00 00000 01224469
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
++|+++++|+....++|+..+|+- |.. ..++.|.|+. .+.+++.||+ ..+
T Consensus 93 iII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~~~--------------~LLpTIrSRC--q~i 143 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSRAA--------------SIISTIRSRC--FKI 143 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCChh--------------hCchhHhhce--EEE
Confidence 999999999999999999999973 222 3456677776 6899999999 555
Q ss_pred ecCCCChHHHHHHHHH
Q psy11213 516 IQDKPDRDNDLKLAQH 531 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~ 531 (621)
....|+.....++..+
T Consensus 144 ~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 144 NVRSSILHAYNELYSQ 159 (263)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 5566666555554443
No 344
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.96 E-value=0.041 Score=62.89 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=22.5
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~ 459 (621)
-.+++|||+.+++......|++++..
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCC
Confidence 36999999999999888889888864
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.96 E-value=0.053 Score=52.27 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecC-c-cccee-eeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDP-I-TNEMV-LEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~-~-~g~~~-l~~GalvlAd~gi~~IDEidk 444 (621)
-+.|+|+.|+|||+|++.++.+.+.. +...|.. .+....+. . .|+.. +.-......+..++++||-..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------PVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------EEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 67899999999999999999986431 1111110 11111111 1 12111 011112223678999999764
Q ss_pred -CChhhhhhhHhhhcc
Q psy11213 445 -LPDADRTAIHEVMEQ 459 (621)
Q Consensus 445 -~~~~~~~~L~eame~ 459 (621)
++...+..+.+++.+
T Consensus 101 ~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 101 YLDIEQRLNAARAIRR 116 (177)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 667777777777654
No 346
>PRK13946 shikimate kinase; Provisional
Probab=93.92 E-value=0.06 Score=52.09 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=27.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
-+|+|+|.||+|||++++.+++.+....+.++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 38999999999999999999999766555444
No 347
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.85 E-value=0.055 Score=56.44 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=23.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
-++++|+||+|||++++.+++.++...+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~ 31 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVN 31 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEE
Confidence 5788999999999999999998753333
No 348
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.85 E-value=0.048 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++++|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988754
No 349
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.83 E-value=0.067 Score=52.66 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=29.3
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
|+...+.||=.....+. -+.++||.|+|||+|+|.+..+
T Consensus 13 g~~~VLkgi~l~v~~Ge---------vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 13 GDKEVLKGISLSVEKGE---------VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCeEEecCcceeEcCCC---------EEEEECCCCCCHHHHHHHHHCC
Confidence 55555666654444444 6889999999999999999776
No 350
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=93.83 E-value=0.082 Score=54.38 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=79.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
-+.++|||+||||.|+++|++.+|.--..... ...+.+.. ..++-+++-||. .|.++..
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~----------------n~nF~f~d----~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN----------------NNNFPFQD----CFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT----------------TTCCCCCC----CCCECEEECTCG-GCCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC----------------CCCCChhh----hhhccEEEeccc-CccHHHH
Confidence 68999999999999999999887542211111 12222211 123456677887 4555566
Q ss_pred hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHH
Q psy11213 451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQ 530 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~ 530 (621)
..+-..+.-..+.|.........=.++-||.++|-.--....... ....-..||-+|+. .+-+.
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~di~~v~~g~~--~s~~h~~~L~~rm~-~~~~~------------- 237 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNNDITFVVDGNT--VSDAHAQPLKDRMY-KFNFT------------- 237 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECCECTSCEESSC--EE-TCHHCCCCCEE-CCCHH-------------
T ss_pred HHHHHHhCCCceEeecccCCceEecCCceEEEeccceEEEeeCCE--ecHHHHHHHHHHhH-hhhhh-------------
Confidence 667677777777775333333333345566677653111000000 00112346777772 22211
Q ss_pred HHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHc
Q psy11213 531 HITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG 563 (621)
Q Consensus 531 ~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~ 563 (621)
..+. .....++.++++.++.+++.
T Consensus 238 ~~l~---------~~~g~it~~d~~~~l~W~~~ 261 (271)
T PF01057_consen 238 RQLP---------PAFGPITPEDVKQFLQWSEQ 261 (271)
T ss_dssp CHHH---------CCSS-SSHHCCHHHHHHHCH
T ss_pred eecC---------cccCCcCHHHHHHHHHHHhc
Confidence 0111 12467888888999888876
No 351
>PRK08233 hypothetical protein; Provisional
Probab=93.83 E-value=0.049 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
=|.+.|+||+|||++++.+++.++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467889999999999999999875
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.82 E-value=0.11 Score=48.28 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=49.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecCccccee--eeccceeecCCCeeEecCCC-C
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDPITNEMV--LEGGALVLADQGICCIDEFD-K 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~~~g~~~--l~~GalvlAd~gi~~IDEid-k 444 (621)
.+.++|++|+|||+|++.++...+.. ++..|. ...+....-..|+.. .-+-++ ..+..++++||-. .
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral-~~~p~illlDEP~~~ 100 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLL-LENPNLLLLDEPTNH 100 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHH-hcCCCEEEEeCCccC
Confidence 78899999999999999999886531 111111 000111111122211 012222 2367899999975 5
Q ss_pred CChhhhhhhHhhhcc
Q psy11213 445 LPDADRTAIHEVMEQ 459 (621)
Q Consensus 445 ~~~~~~~~L~eame~ 459 (621)
++...+..+.+.+.+
T Consensus 101 LD~~~~~~l~~~l~~ 115 (144)
T cd03221 101 LDLESIEALEEALKE 115 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777788888888864
No 353
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.2 Score=52.07 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD 511 (621)
..-|++||+.|+|++...++|+..+|+- |.+ ..|+.|.|+. .+.+++.||+-
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRcq 156 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRTQ 156 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcce
Confidence 4469999999999999999999999972 222 3456666765 68999999993
No 354
>PRK14527 adenylate kinase; Provisional
Probab=93.71 E-value=0.05 Score=52.88 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++++|+||+|||++++.+++...
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987753
No 355
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.68 E-value=0.046 Score=57.43 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=22.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++|+|+||||||.|+.++++.+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998864
No 356
>PRK14529 adenylate kinase; Provisional
Probab=93.65 E-value=0.053 Score=54.26 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
+|+|+|+||+|||++++.+++.+....+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 6899999999999999999998654333
No 357
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.59 E-value=0.048 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=16.8
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998776665553
No 358
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.54 E-value=0.15 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.1
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.++|+++|+||+|||+|++.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999988765
No 359
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.51 E-value=0.13 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
||+++|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 6899999999999999998764
No 360
>KOG2545|consensus
Probab=93.49 E-value=2.7 Score=45.21 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=121.3
Q ss_pred CcccEEEeCCCCc--chhHHHHHHHhhccccEEecCCCCccccce-EEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 368 GNINICLMGDPGV--AKSQLLSYIERLARRSQYTTGRGSSGVGLT-AAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 368 g~i~vLL~G~PGt--GKS~ll~~ia~~~pr~~~~~g~~~s~~gLt-a~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
|+.-+=|+|=|-- =-|+|-+.+..++|++++..-.... |. ++..-.+.-+.-.+.+|.|-+|+|--++|||=..
T Consensus 308 GkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~---lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeL 384 (543)
T KOG2545|consen 308 GKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEE---LNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETEL 384 (543)
T ss_pred eeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHh---hcccCccccccccccccccceeecCCCceEEeehhhc
Confidence 5666666665543 4567777788888888765322111 11 1111111122235789999999999999999643
Q ss_pred -------CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 445 -------LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 445 -------~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
..-..-+.|-..+++|.+.-.-.--....++++.|+-.+- || .-||+.+-=|.+ .
T Consensus 385 qqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSe---Gr----------silPADl~i~lq-----p 446 (543)
T KOG2545|consen 385 QQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSE---GR----------SILPADLGIRLQ-----P 446 (543)
T ss_pred CCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeC---Cc----------ccCcccccccCC-----C
Confidence 2222335666778888876533333345566666665542 33 113333211211 1
Q ss_pred CCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213 518 DKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS 597 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t 597 (621)
+.++. . .-..+=+....|.|+..+|...-.++++..++|..-|+++|+.... ..
T Consensus 447 ~~v~~------l--------------e~~tps~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq~n~~------sn 500 (543)
T KOG2545|consen 447 DSVDT------L--------------EFPTPSDLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQYNKE------SN 500 (543)
T ss_pred CCCCc------c--------------ccCChhHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhhCcc------cc
Confidence 11110 0 0001123445677888888878889999999999999999987443 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q psy11213 598 ARNLLAILRLSTALARLRLCDEF 620 (621)
Q Consensus 598 ~R~leslirla~A~Akl~lr~~V 620 (621)
...|-.++-+|+-.++-.++..+
T Consensus 501 addLs~lLv~sRlls~S~G~ttl 523 (543)
T KOG2545|consen 501 ADDLSLLLVCSRLLSKSFGRTTL 523 (543)
T ss_pred hhHHHHHHHHHHHHHHhhccchh
Confidence 56677777788888887777654
No 361
>PLN02459 probable adenylate kinase
Probab=93.49 E-value=0.077 Score=54.18 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=26.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
.+++|+|+||+|||++++.+++...-..+.+|.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gd 62 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGD 62 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence 489999999999999999999986554444443
No 362
>PLN02674 adenylate kinase
Probab=93.46 E-value=0.07 Score=54.08 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=25.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.+|+|+|+||+||+++++.+++...-....+|
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~G 63 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATG 63 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence 38999999999999999999998654443333
No 363
>KOG0482|consensus
Probab=93.46 E-value=0.036 Score=60.36 Aligned_cols=45 Identities=44% Similarity=0.516 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhhHHHhhhhHHHHH
Q psy11213 45 FSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFL 93 (621)
Q Consensus 45 ~k~~~~~fl~~f~~~~~~~~k~~~~~~~~~~~a~reei~~~i~~~~~Fl 93 (621)
-|++++.||.+|+..+..| +|.++|.+.++||+.+.++||||-+.
T Consensus 13 dk~~~~~fl~e~~e~~~~~----kY~~~L~eia~Re~~ai~vdldDi~~ 57 (721)
T KOG0482|consen 13 DKNKIKKFLDEFYEDNELG----KYMNQLQEIANREQNAIEVDLDDIAE 57 (721)
T ss_pred hhHHHHHHHHhhhccCchh----HHHHHHHHHhcccceeEEEehHHHhh
Confidence 5899999999999777666 99999999999999999999998553
No 364
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.41 E-value=0.059 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-++|+|++|+|||+|++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997655
No 365
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.28 E-value=0.06 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.8
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
|.|.|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.18 E-value=0.085 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++|.|+.|+|||+|+|.+++.+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999865
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.18 E-value=0.16 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++|++|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 899999999999999999887654
No 368
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.16 E-value=0.053 Score=54.07 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.2
Q ss_pred ccEEEeCCCCcchhHHHHHHH
Q psy11213 370 INICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia 390 (621)
..+|++|+||+|||++++.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 479999999999999999885
No 369
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.13 E-value=0.059 Score=64.77 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=47.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---cEEec-CCCCccccceEEEeecCcc-cce--eeeccceeecCCCeeEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---SQYTT-GRGSSGVGLTAAVMKDPIT-NEM--VLEGGALVLADQGICCIDEFD 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---~~~~~-g~~~s~~gLta~~~~~~~~-g~~--~l~~GalvlAd~gi~~IDEid 443 (621)
-+++.|.||||||++++.+...+.. .+... -.+..+..|....-....| ..| .+..|...+....+++|||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999999987766432 12111 1111111111000000000 001 112233334566799999999
Q ss_pred CCChhhhhhhHhhhc
Q psy11213 444 KLPDADRTAIHEVME 458 (621)
Q Consensus 444 k~~~~~~~~L~eame 458 (621)
+++......|+...+
T Consensus 444 Mv~~~~m~~LL~~a~ 458 (988)
T PRK13889 444 MVGTRQLERVLSHAA 458 (988)
T ss_pred cCCHHHHHHHHHhhh
Confidence 999887777776543
No 370
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.13 E-value=0.088 Score=41.47 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..+|.|+.|+|||+|+.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987763
No 371
>PRK04040 adenylate kinase; Provisional
Probab=93.09 E-value=0.09 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999875
No 372
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.06 E-value=0.08 Score=48.70 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.7
Q ss_pred EEEeCCCCcchhHHHHHHHhhccc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+.|+||+|+|||+|++.+++..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999998664
No 373
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=92.98 E-value=0.079 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+++++|+|+||+|||+|++++.+-
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999998644
No 374
>KOG0064|consensus
Probab=92.98 E-value=0.12 Score=56.85 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+.|+|+.||.|||||.|.|.+..+.|-
T Consensus 508 G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred CceEEEECCCCccHHHHHHHHhccCcc
Confidence 469999999999999999999999874
No 375
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.96 E-value=0.27 Score=50.64 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
|.||+|.+|+||.+++|.++.+..-.++..
T Consensus 33 h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i 62 (268)
T PF12780_consen 33 HALLVGVGGSGRQSLARLAAFICGYEVFQI 62 (268)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHTTEEEE-T
T ss_pred CeEEecCCCccHHHHHHHHHHHhccceEEE
Confidence 999999999999999999998876666543
No 376
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.93 E-value=0.08 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999999876
No 377
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.90 E-value=0.069 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+-.+||.||||||||.|+-++++.+..
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 458999999999999999999999654
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.89 E-value=0.09 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++++|++|+|||+++++++...|
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999999999999998865
No 379
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.87 E-value=0.11 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999987743
No 380
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.87 E-value=0.079 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 381
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.87 E-value=0.071 Score=47.08 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.4
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999986
No 382
>PRK01184 hypothetical protein; Provisional
Probab=92.83 E-value=0.1 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|+|+|+||+|||++++ +++...
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g 25 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMG 25 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcC
Confidence 57899999999999988 445443
No 383
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.81 E-value=0.084 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|+||+|||+|+.++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999988754
No 384
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.80 E-value=0.14 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
=|.++||.|||||+|++.+|.+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578899999999999999999854
No 385
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=92.77 E-value=0.086 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+|+|+|+||+|||+|++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988754
No 386
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.76 E-value=0.084 Score=56.30 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.|+|++|++|+|||++++++....|.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 39999999999999999999988764
No 387
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.74 E-value=0.12 Score=54.77 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-+.|+||.|||||++||.+|.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57788999999999999999884
No 388
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.74 E-value=0.099 Score=49.11 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
|-+-|+||+|||++++.+|+.+.-..+.+|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 5678999999999999999998776666554
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.16 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999997743
No 390
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.69 E-value=0.15 Score=50.89 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+.|++..+.++=..+..+. .+.|+|++|+|||+|++.++...
T Consensus 31 ~~~~~~il~~vs~~i~~Ge---------~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGE---------RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred hcCCeEEEeeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhCCC
Confidence 4455555555544444444 78999999999999999998764
No 391
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.68 E-value=0.079 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 392
>PRK04182 cytidylate kinase; Provisional
Probab=92.67 E-value=0.095 Score=49.86 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|+|.|.||+|||++++.+++.+....+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999986654443
No 393
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.66 E-value=0.09 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999987754
No 394
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.65 E-value=0.12 Score=50.84 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
-+++.|.||+|||++++.++..+....
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 588999999999999999998865433
No 395
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.55 E-value=0.068 Score=64.68 Aligned_cols=84 Identities=13% Similarity=0.250 Sum_probs=51.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCc---------cccceEEEeecCcccce--eeeccceeecCCCeeE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSS---------GVGLTAAVMKDPITNEM--VLEGGALVLADQGICC 438 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s---------~~gLta~~~~~~~~g~~--~l~~GalvlAd~gi~~ 438 (621)
-.++.|.+|||||++++.+...+...-+ +.|..++ ..|+.+..+ -.| .+..|.-.+..+.+++
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHHhhhccCccCCCCCcEEE
Confidence 5789999999999999999876432111 1111111 112221111 011 1123444455567999
Q ss_pred ecCCCCCChhhhhhhHhhhcc
Q psy11213 439 IDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 439 IDEidk~~~~~~~~L~eame~ 459 (621)
|||..+++......|+...+.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh
Confidence 999999998888888887763
No 396
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.55 E-value=0.1 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.|++++|++|+|||++++++....|.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 39999999999999999999988774
No 397
>PF13479 AAA_24: AAA domain
Probab=92.47 E-value=0.092 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=22.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.+.++|+|+||+|||+++..+ |+..+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 468999999999999998877 665554
No 398
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.46 E-value=0.15 Score=58.22 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|.|+|.||+|||++++.+++.+.
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhh
Confidence 789999999999999999999865
No 399
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.44 E-value=0.097 Score=48.62 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|++.+...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988644
No 400
>PRK06547 hypothetical protein; Provisional
Probab=92.40 E-value=0.13 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|++.|++|+|||++++.+++.+.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 677789999999999999998754
No 401
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.38 E-value=0.11 Score=48.90 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
-|.+.|+||+|||++++.+++.++-..+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999986554444
No 402
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.37 E-value=0.1 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|.++|++|+|||+|++.++..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999876
No 403
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.35 E-value=0.24 Score=49.20 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.2
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
-++|.||.|+|||+++|.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 588999999999999999874
No 404
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.33 E-value=0.1 Score=47.28 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 405
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.33 E-value=0.17 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 789999999999999999998753
No 406
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=92.32 E-value=0.11 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988654
No 407
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.30 E-value=0.11 Score=47.45 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|+..+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988654
No 408
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.28 E-value=0.1 Score=49.90 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..|+++|.||+|||++++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 409
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.28 E-value=0.1 Score=59.92 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.0
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQ 460 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q 460 (621)
..+++|||..+++-.....|++++..+
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccC
Confidence 369999999999988888899988653
No 410
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.22 E-value=0.11 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++++++|+||+|||+|++.+...
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988643
No 411
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.21 E-value=0.11 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|+++|+||+|||+|++.+..-
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999888753
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.21 E-value=0.12 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.++|++|+|||+|++.++...+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 788999999999999999988753
No 413
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.098 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.2
Q ss_pred EEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
|+|.|.||+|||++++.+++.+..-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6899999999999999999997543
No 414
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.20 E-value=0.19 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-++|+|+.|+|||+|+.++...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7889999999999999988765
No 415
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.19 E-value=0.11 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.5
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+.++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.17 E-value=0.095 Score=51.31 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=46.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecC-cccceeeecc--ceeecCCCeeEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDP-ITNEMVLEGG--ALVLADQGICCIDEFD 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~-~~g~~~l~~G--alvlAd~gi~~IDEid 443 (621)
-+.|+|.+|+|||+|++.++..+.. .++..|..... .+........ ...++...-+ +..+++.|..+|..+.
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~~~ 104 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-GLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFI 104 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-hhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 6889999999999999999987531 23332211100 0111000100 0111111100 1223345666667676
Q ss_pred CCChhhhhhhHhhhcc
Q psy11213 444 KLPDADRTAIHEVMEQ 459 (621)
Q Consensus 444 k~~~~~~~~L~eame~ 459 (621)
....+.+..+.+.|.+
T Consensus 105 ~~~~~~R~~~r~~l~~ 120 (198)
T PRK03846 105 SPHRAERQMVRERLGE 120 (198)
T ss_pred CCCHHHHHHHHHHccc
Confidence 6666778778777754
No 417
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.14 E-value=0.19 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999987753
No 418
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=92.13 E-value=0.12 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999888764
No 419
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.11 E-value=0.11 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.7
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|+.|+||+|||+|+..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999988776543
No 420
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.10 E-value=0.19 Score=49.59 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 788999999999999999988753
No 421
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=92.09 E-value=0.12 Score=48.72 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|+||+|||+|+.++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 48999999999999999988754
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.08 E-value=0.12 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
|.|.|++|+|||+|++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 423
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.03 E-value=0.17 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998864
No 424
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.97 E-value=0.092 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.5
Q ss_pred EeCCCCcchhHHHHHHHhhccc
Q psy11213 374 LMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 374 L~G~PGtGKS~ll~~ia~~~pr 395 (621)
|+|+||+|||++++.+++...-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999998643
No 425
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.93 E-value=0.12 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=19.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|++.+...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999887653
No 426
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=91.92 E-value=0.54 Score=43.65 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|+.++.+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 58999999999999999998664
No 427
>KOG2170|consensus
Probab=91.83 E-value=0.056 Score=55.54 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=51.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccc---cee-----eeccceeecCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITN---EMV-----LEGGALVLADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g---~~~-----l~~GalvlAd~gi~~IDEi 442 (621)
-+-|-|.|||||+..++.+|+-+- ..|..+.-+-...+...=|... .+. ...|.+-.-...+.++||.
T Consensus 112 vLSfHG~tGTGKN~Va~iiA~n~~----~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~ 187 (344)
T KOG2170|consen 112 VLSFHGWTGTGKNYVAEIIAENLY----RGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEV 187 (344)
T ss_pred EEEecCCCCCchhHHHHHHHHHHH----hccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechh
Confidence 455679999999999999998743 3344433332222111101000 000 0123333446789999999
Q ss_pred CCCChhhhhhhHhhhc
Q psy11213 443 DKLPDADRTAIHEVME 458 (621)
Q Consensus 443 dk~~~~~~~~L~eame 458 (621)
|||++.....|...++
T Consensus 188 DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 188 DKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhcCHhHHHHHhhhhc
Confidence 9999999888888887
No 428
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.23 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998754
No 429
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.79 E-value=0.2 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999988753
No 430
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.76 E-value=0.13 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++++||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998877754
No 431
>PLN02165 adenylate isopentenyltransferase
Probab=91.75 E-value=0.17 Score=53.49 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.+.|+||+|+|||+|+..+++.++..+...+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 6899999999999999999999775544433
No 432
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=91.72 E-value=0.12 Score=47.95 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|+++|+||+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999988764
No 433
>PRK08356 hypothetical protein; Provisional
Probab=91.70 E-value=0.2 Score=48.86 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=19.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
..++|+|+||+|||++++++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999965
No 434
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.68 E-value=0.25 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 889999999999999999987743
No 435
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.66 E-value=0.18 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.+.++|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999998654
No 436
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=91.66 E-value=0.14 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|++|+|||+|+.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988764
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.65 E-value=0.23 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|+.|+|||+|++.++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999998774
No 438
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.64 E-value=0.14 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-|+++|+||+|||+|++++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
No 439
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.64 E-value=0.24 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 789999999999999999988753
No 440
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.63 E-value=0.14 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=22.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.-|.|.|++|+|||+|++.+++.+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999986
No 441
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.63 E-value=0.22 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998753
No 442
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.62 E-value=0.22 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999988753
No 443
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.62 E-value=0.19 Score=50.70 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 788999999999999999998754
No 444
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=1 Score=44.03 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc-ceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR-VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar-~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.|.++||+.++|+....++|+..+|+- |.+ ..+++|.||. .+.++++||+
T Consensus 55 ~~k~iI~~a~~l~~~A~NaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRc 105 (206)
T PRK08485 55 EEKIIVIAAPSYGIEAQNALLKILEEP-------------PKNICFIIVAKSKN--------------LLLPTIRSRL 105 (206)
T ss_pred CcEEEEEchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCchHHHhhh
Confidence 355679999999999999999999972 222 4677787876 6899999999
No 445
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.58 E-value=0.24 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998754
No 446
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.58 E-value=0.22 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998754
No 447
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.57 E-value=0.24 Score=49.81 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998854
No 448
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=91.56 E-value=0.13 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|+++|+||+|||+|++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999988654
No 449
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.56 E-value=0.14 Score=48.00 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.9
Q ss_pred cEEEeCCCCcchhHHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia 390 (621)
+|+++|+||+|||+|+..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 68999999999999997664
No 450
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.55 E-value=0.27 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.+.|+|+.|+|||+|++.++...+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8899999999999999999988653
No 451
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.55 E-value=0.21 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
=+.|.||.|||||++||.||..
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999987
No 452
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.54 E-value=0.14 Score=48.87 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998863
No 453
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.24 Score=47.77 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=32.4
Q ss_pred cccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 342 VVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 342 ~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
|.-|++....++-..+..+. -+.+.|+.|+|||+|+|.++.++..
T Consensus 10 ~~R~e~~lf~~L~f~l~~Ge---------~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 10 CERGERTLFSDLSFTLNAGE---------ALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred hccCcceeecceeEEEcCCC---------EEEEECCCCCcHHHHHHHHHcccCC
Confidence 44566666655544444444 5778999999999999999988643
No 454
>PLN02199 shikimate kinase
Probab=91.51 E-value=0.18 Score=52.24 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=26.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
+|+|+|.+|+|||++++.+++.+...++.++
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 9999999999999999999998766655444
No 455
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.51 E-value=0.15 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|+++|+||+|||+|+..+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988644
No 456
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.51 E-value=0.18 Score=49.03 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=22.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.-+.|+||+|+|||+|++.+.+..|.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 35889999999999999999887665
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.51 E-value=0.13 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=24.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
.++++.|++|+|||++++++....|..
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred eEEEEECCCccccchHHHHHhhhcccc
Confidence 499999999999999999999887665
No 458
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=91.46 E-value=0.12 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=18.7
Q ss_pred cEEEeCCCCcchhH-HHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQ-LLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~-ll~~ia~~~ 393 (621)
++++.|++|+|||. ++..+....
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHh
Confidence 89999999999999 666665553
No 459
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=91.43 E-value=0.15 Score=46.75 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|+||+|||+|+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 58999999999999999988653
No 460
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.41 E-value=1.1 Score=45.36 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=100.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcc-cceeee-------ccceeec----CC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPIT-NEMVLE-------GGALVLA----DQ 434 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~-g~~~l~-------~GalvlA----d~ 434 (621)
-+.++|+-|+|||.+.|++...++... +......+..++..+...+-.. ..|... -+...+. .+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 678899999999999997777766532 3333333443333322221111 111111 0111111 12
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCccccc--CCCHhHhccccE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNI--QLPAALLSRFDL 512 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~--~L~~aLlsRFDl 512 (621)
-++++||...++.+...+|.-.++--.= + ..+.+|+-..-|.- .... .--..+-.|+++
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~~-----~-----~~~l~ivL~Gqp~L---------~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEED-----S-----SKLLSIVLIGQPKL---------RPRLRLPVLRELEQRIDI 193 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhccc-----c-----cCceeeeecCCccc---------chhhchHHHHhhhheEEE
Confidence 4789999999988888777665542110 0 11133444444431 0000 011244458864
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRD 592 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~ 592 (621)
.+. .++.+.++-....+|.+ .-|....|.+++++...|... .
T Consensus 194 r~~-l~P~~~~~t~~yl~~~L-------------------------e~a~~~~~l~~~~a~~~i~~~-----s------- 235 (269)
T COG3267 194 RIE-LPPLTEAETGLYLRHRL-------------------------EGAGLPEPLFSDDALLLIHEA-----S------- 235 (269)
T ss_pred EEe-cCCcChHHHHHHHHHHH-------------------------hccCCCcccCChhHHHHHHHH-----h-------
Confidence 433 33333333333333332 223222577888888776542 1
Q ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 593 MSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 593 ~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
...||....+..+|.-.|....++.|+
T Consensus 236 --qg~P~lin~~~~~Al~~a~~a~~~~v~ 262 (269)
T COG3267 236 --QGIPRLINNLATLALDAAYSAGEDGVS 262 (269)
T ss_pred --ccchHHHHHHHHHHHHHHHHcCCCccc
Confidence 125888888888888888877777653
No 461
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.41 E-value=0.2 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEeCCCCcchhHHHHHHHhhcc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999864
No 462
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.40 E-value=0.13 Score=46.95 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
|.++|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999998654
No 463
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.37 E-value=0.23 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998754
No 464
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.26 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998753
No 465
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.25 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 789999999999999999998854
No 466
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=91.35 E-value=0.15 Score=47.60 Aligned_cols=23 Identities=52% Similarity=0.748 Sum_probs=20.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+|+++|+||+|||+|++++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998643
No 467
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.35 E-value=0.27 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999987743
No 468
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.31 E-value=0.27 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998864
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.29 E-value=0.26 Score=43.33 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.4
Q ss_pred cEEEeCCCCcchhHHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia 390 (621)
-+.|+|++|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999875
No 470
>PRK13808 adenylate kinase; Provisional
Probab=91.29 E-value=0.19 Score=53.25 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
+|+|+|+||+|||++++.+++......+.+|
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~g 32 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTG 32 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 6899999999999999999998655444433
No 471
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.29 E-value=0.16 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++++|++|+|||++++++....|
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 472
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=91.29 E-value=0.16 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++++++|+||+|||+|+..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 58999999999999999887654
No 473
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.27 E-value=0.16 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|++|+|||+|+..+..-
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999987653
No 474
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.23 E-value=0.26 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999987753
No 475
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.21 E-value=0.21 Score=49.79 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
.|.+.|++|+|||++++.+++.++-..+.+|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 57899999999999999999887766655553
No 476
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.20 E-value=0.29 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++.+.+
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 788999999999999999998864
No 477
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.19 E-value=0.24 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++.+.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 788999999999999999998864
No 478
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.19 E-value=0.28 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999988743
No 479
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.16 E-value=0.29 Score=49.28 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998854
No 480
>KOG0060|consensus
Probab=91.14 E-value=0.25 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=23.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|+|++||.|||||.|+|.++.+.|
T Consensus 462 ~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 462 QNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred CeEEEECCCCCchhHHHHHHhcccc
Confidence 4999999999999999999999976
No 481
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=91.14 E-value=0.17 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.++++|++|+|||+|++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999988754
No 482
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.12 E-value=0.25 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 788999999999999999988753
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.12 E-value=0.17 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=23.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+++++|++|+|||++++++....|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 9999999999999999999988764
No 484
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=91.11 E-value=0.25 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998864
No 485
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=91.10 E-value=0.17 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..++++|+||+|||+|+..+...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988654
No 486
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.08 E-value=0.25 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999988753
No 487
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.08 E-value=0.28 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 788999999999999999997753
No 488
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.05 E-value=0.3 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 788999999999999999987743
No 489
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.04 E-value=0.24 Score=47.61 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.1
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
|.|.|.||+|||++++.+++ ..-.++.++
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 68999999999999999998 444444443
No 490
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.04 E-value=0.17 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.++|+||+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988744
No 491
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=91.03 E-value=0.16 Score=47.56 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|.++|+||+|||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 492
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=91.03 E-value=0.18 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
+.|+++|++|+|||+|++.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999988754
No 493
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.02 E-value=0.2 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccC
Confidence 789999999999999999987753
No 494
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=91.01 E-value=0.34 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 789999999999999999998754
No 495
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.99 E-value=0.15 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.4
Q ss_pred EEEeCCCCcchhHHHHHHHhhccc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
|.+.|++|+|||++++.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999998753
No 496
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=90.97 E-value=0.16 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+++||.|+|||.+++++.-.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999997554
No 497
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.96 E-value=0.16 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.++|+||+|||+|+.++...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999988644
No 498
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.96 E-value=0.31 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998753
No 499
>KOG0058|consensus
Probab=90.96 E-value=0.29 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+-||||.|.|||+++..+.+.-
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999999999999988873
No 500
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.95 E-value=0.3 Score=49.33 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999998854
Done!