Query psy11213
Match_columns 621
No_of_seqs 439 out of 3162
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 21:01:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 5.4E-82 1.8E-86 713.9 26.2 484 86-621 5-576 (595)
2 3f8t_A Predicted ATPase involv 100.0 4.2E-58 1.4E-62 491.9 19.0 295 301-621 108-472 (506)
3 2vl6_A SSO MCM N-TER, minichro 100.0 2.1E-43 7.3E-48 360.9 19.5 227 86-359 11-242 (268)
4 1ltl_A DNA replication initiat 100.0 1.6E-42 5.4E-47 356.0 21.7 210 87-357 16-227 (279)
5 2r44_A Uncharacterized protein 99.9 9.8E-23 3.3E-27 213.9 21.4 231 371-621 48-286 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 1E-21 3.4E-26 216.6 16.3 247 341-621 22-275 (500)
7 1g8p_A Magnesium-chelatase 38 99.9 9.3E-22 3.2E-26 207.3 14.6 228 371-621 47-311 (350)
8 3k1j_A LON protease, ATP-depen 99.7 2.2E-17 7.7E-22 187.1 11.2 155 424-621 192-364 (604)
9 1ojl_A Transcriptional regulat 99.6 4.2E-15 1.4E-19 154.3 11.3 201 369-612 25-235 (304)
10 2bjv_A PSP operon transcriptio 99.6 1.1E-14 3.8E-19 147.6 11.9 197 370-612 30-240 (265)
11 1ofh_A ATP-dependent HSL prote 99.5 3.4E-14 1.2E-18 146.5 10.5 209 370-614 51-275 (310)
12 3pfi_A Holliday junction ATP-d 99.5 1E-13 3.5E-18 145.3 12.9 135 370-533 56-197 (338)
13 1um8_A ATP-dependent CLP prote 99.5 5.7E-14 1.9E-18 149.9 10.9 216 369-613 72-340 (376)
14 4fcw_A Chaperone protein CLPB; 99.5 1.2E-13 4E-18 142.9 12.3 201 371-608 49-274 (311)
15 3hws_A ATP-dependent CLP prote 99.5 9.1E-15 3.1E-19 155.3 3.0 218 370-616 52-326 (363)
16 3m6a_A ATP-dependent protease 99.4 9E-13 3.1E-17 147.3 12.7 143 371-533 110-266 (543)
17 1r6b_X CLPA protein; AAA+, N-t 99.4 1.1E-12 3.8E-17 152.5 13.2 184 371-579 490-693 (758)
18 3dzd_A Transcriptional regulat 99.4 1.7E-12 5.8E-17 138.2 12.5 202 368-612 151-361 (368)
19 1ny5_A Transcriptional regulat 99.4 8.6E-13 2.9E-17 141.4 8.7 201 369-612 160-370 (387)
20 3syl_A Protein CBBX; photosynt 99.4 7.3E-13 2.5E-17 136.8 7.9 184 369-613 67-263 (309)
21 1hqc_A RUVB; extended AAA-ATPa 99.4 5.1E-12 1.8E-16 131.2 14.1 135 370-533 39-181 (324)
22 3pxi_A Negative regulator of g 99.3 1.3E-12 4.4E-17 152.0 6.7 189 371-606 523-718 (758)
23 4b4t_J 26S protease regulatory 99.3 1.3E-11 4.3E-16 131.5 12.0 128 371-534 184-333 (405)
24 3vfd_A Spastin; ATPase, microt 99.3 1.3E-11 4.4E-16 132.3 12.1 165 370-578 149-327 (389)
25 3pvs_A Replication-associated 99.3 7.6E-12 2.6E-16 136.4 10.0 126 371-534 52-179 (447)
26 3h4m_A Proteasome-activating n 99.2 1.1E-11 3.8E-16 126.5 8.7 133 371-534 53-202 (285)
27 3eie_A Vacuolar protein sortin 99.2 2.2E-11 7.6E-16 127.1 9.7 132 370-534 52-198 (322)
28 4b4t_I 26S protease regulatory 99.2 2.6E-11 8.9E-16 129.6 10.0 128 371-534 218-367 (437)
29 1xwi_A SKD1 protein; VPS4B, AA 99.2 6.8E-11 2.3E-15 123.5 12.8 134 371-534 47-193 (322)
30 3co5_A Putative two-component 99.2 3E-12 1E-16 117.5 2.1 112 369-516 27-138 (143)
31 4b4t_H 26S protease regulatory 99.2 4.7E-11 1.6E-15 128.8 11.6 128 371-534 245-394 (467)
32 2qp9_X Vacuolar protein sortin 99.2 5.6E-11 1.9E-15 125.8 11.7 132 370-534 85-231 (355)
33 4b4t_M 26S protease regulatory 99.2 2.4E-11 8.3E-16 131.0 8.8 128 371-534 217-366 (434)
34 4b4t_L 26S protease subunit RP 99.2 3.9E-11 1.4E-15 129.5 10.4 129 371-534 217-366 (437)
35 1qvr_A CLPB protein; coiled co 99.2 3.3E-11 1.1E-15 141.9 10.6 198 370-607 589-814 (854)
36 4b4t_K 26S protease regulatory 99.2 3E-11 1E-15 130.2 9.5 129 371-534 208-358 (428)
37 3uk6_A RUVB-like 2; hexameric 99.2 7.1E-11 2.4E-15 124.9 11.7 82 435-533 191-272 (368)
38 3n70_A Transport activator; si 99.2 9.2E-12 3.1E-16 114.5 4.0 114 369-513 24-137 (145)
39 3d8b_A Fidgetin-like protein 1 99.2 7.5E-11 2.6E-15 124.9 11.2 164 370-578 118-296 (357)
40 4akg_A Glutathione S-transfera 99.2 9.4E-11 3.2E-15 149.5 13.9 202 368-606 1266-1483(2695)
41 2zan_A Vacuolar protein sortin 99.2 1.8E-10 6E-15 125.7 13.8 136 370-534 168-315 (444)
42 3b9p_A CG5977-PA, isoform A; A 99.2 1.6E-10 5.5E-15 118.6 12.6 137 370-534 55-203 (297)
43 1in4_A RUVB, holliday junction 99.1 2.9E-10 9.9E-15 119.2 14.0 134 371-533 53-193 (334)
44 3t15_A Ribulose bisphosphate c 99.1 2.3E-11 7.8E-16 125.4 5.5 141 370-534 37-199 (293)
45 3pxg_A Negative regulator of g 99.1 4.6E-10 1.6E-14 123.2 15.3 195 371-606 203-404 (468)
46 3vkg_A Dynein heavy chain, cyt 99.1 3.9E-10 1.3E-14 144.6 16.6 201 368-606 1303-1521(3245)
47 2qz4_A Paraplegin; AAA+, SPG7, 99.1 1.1E-10 3.7E-15 117.3 9.1 134 371-535 41-192 (262)
48 4akg_A Glutathione S-transfera 99.1 5.5E-10 1.9E-14 142.6 17.5 190 368-614 644-842 (2695)
49 2c9o_A RUVB-like 1; hexameric 99.1 1.3E-09 4.4E-14 119.2 18.3 130 435-621 297-426 (456)
50 1lv7_A FTSH; alpha/beta domain 99.1 2.6E-10 9E-15 114.7 11.0 129 371-533 47-195 (257)
51 1g41_A Heat shock protein HSLU 99.1 4.3E-10 1.5E-14 121.5 12.7 133 433-606 250-401 (444)
52 2r62_A Cell division protease 99.0 7.7E-11 2.6E-15 119.2 2.2 132 371-534 46-197 (268)
53 3hu3_A Transitional endoplasmi 99.0 3.3E-10 1.1E-14 124.8 7.2 131 369-533 238-385 (489)
54 2chg_A Replication factor C sm 99.0 6E-10 2E-14 107.8 7.9 130 371-533 40-174 (226)
55 3u61_B DNA polymerase accessor 99.0 1.4E-09 5E-14 113.0 11.0 128 371-533 50-178 (324)
56 3cf0_A Transitional endoplasmi 99.0 5.8E-10 2E-14 115.2 7.0 132 371-535 51-201 (301)
57 2ce7_A Cell division protein F 98.9 1.8E-09 6.2E-14 118.1 10.3 128 371-534 51-200 (476)
58 1sxj_D Activator 1 41 kDa subu 98.9 3.7E-09 1.3E-13 110.7 12.2 152 371-562 60-225 (353)
59 3pxi_A Negative regulator of g 98.9 6.8E-09 2.3E-13 120.6 15.1 177 371-584 203-386 (758)
60 1d2n_A N-ethylmaleimide-sensit 98.9 4.5E-10 1.5E-14 114.0 2.4 123 370-517 65-196 (272)
61 3bos_A Putative DNA replicatio 98.9 2.9E-08 9.8E-13 97.6 15.1 169 370-616 53-228 (242)
62 2chq_A Replication factor C sm 98.9 1.4E-08 4.7E-13 104.5 13.2 129 371-533 40-174 (319)
63 2dhr_A FTSH; AAA+ protein, hex 98.8 5.6E-09 1.9E-13 114.9 9.9 127 371-532 66-213 (499)
64 1iqp_A RFCS; clamp loader, ext 98.8 7.6E-09 2.6E-13 106.9 9.4 148 371-561 48-201 (327)
65 3cf2_A TER ATPase, transitiona 98.8 3.4E-09 1.2E-13 122.3 7.2 129 371-534 240-386 (806)
66 1r6b_X CLPA protein; AAA+, N-t 98.8 6.8E-09 2.3E-13 120.6 9.4 174 371-581 209-407 (758)
67 1njg_A DNA polymerase III subu 98.8 3.5E-08 1.2E-12 96.3 12.4 132 371-533 47-198 (250)
68 1ixz_A ATP-dependent metallopr 98.8 1.1E-08 3.7E-13 102.5 7.9 128 371-533 51-199 (254)
69 1qvr_A CLPB protein; coiled co 98.7 1.4E-08 4.7E-13 119.6 9.5 177 371-585 193-394 (854)
70 3cf2_A TER ATPase, transitiona 98.7 2.6E-09 8.8E-14 123.2 3.0 127 371-533 513-661 (806)
71 3vkg_A Dynein heavy chain, cyt 98.7 5.2E-08 1.8E-12 125.3 14.5 188 369-614 604-802 (3245)
72 2z4s_A Chromosomal replication 98.7 1.8E-08 6.3E-13 109.5 9.0 176 371-617 132-318 (440)
73 1l8q_A Chromosomal replication 98.7 1.8E-08 6.2E-13 104.8 8.3 134 371-534 39-180 (324)
74 1iy2_A ATP-dependent metallopr 98.7 2.5E-08 8.5E-13 101.5 7.9 128 371-533 75-223 (278)
75 2x8a_A Nuclear valosin-contain 98.7 7.2E-08 2.4E-12 98.2 10.9 129 371-534 46-192 (274)
76 1jbk_A CLPB protein; beta barr 98.7 2.3E-09 7.7E-14 101.2 -0.5 132 371-527 45-192 (195)
77 2v1u_A Cell division control p 98.7 4.5E-08 1.5E-12 103.3 9.4 167 371-562 46-236 (387)
78 1sxj_C Activator 1 40 kDa subu 98.6 7.5E-08 2.5E-12 100.9 9.7 131 371-533 48-182 (340)
79 3te6_A Regulatory protein SIR3 98.6 1.8E-07 6.3E-12 96.9 12.5 144 371-535 47-213 (318)
80 1jr3_A DNA polymerase III subu 98.6 4.3E-07 1.5E-11 95.6 14.9 153 371-561 40-210 (373)
81 1ypw_A Transitional endoplasmi 98.6 2.8E-09 9.7E-14 124.3 -3.6 160 370-563 512-696 (806)
82 1fnn_A CDC6P, cell division co 98.6 3.4E-07 1.2E-11 96.8 12.8 165 371-561 46-227 (389)
83 1sxj_B Activator 1 37 kDa subu 98.6 1.4E-07 4.9E-12 97.0 9.6 131 371-534 44-180 (323)
84 2qby_B CDC6 homolog 3, cell di 98.5 3.1E-07 1.1E-11 97.1 11.6 95 436-562 136-232 (384)
85 1sxj_E Activator 1 40 kDa subu 98.5 1.7E-07 5.9E-12 98.2 9.6 92 433-561 134-226 (354)
86 2p65_A Hypothetical protein PF 98.5 6.2E-09 2.1E-13 98.0 -1.7 116 371-512 45-180 (187)
87 1sxj_A Activator 1 95 kDa subu 98.5 9.1E-07 3.1E-11 98.1 13.3 135 371-534 79-223 (516)
88 1a5t_A Delta prime, HOLB; zinc 98.4 8.9E-07 3.1E-11 92.6 11.6 72 433-532 108-179 (334)
89 1ypw_A Transitional endoplasmi 98.3 7.6E-07 2.6E-11 103.8 8.9 129 370-533 239-385 (806)
90 2qby_A CDC6 homolog 1, cell di 98.2 2.3E-06 7.9E-11 90.0 9.3 163 371-562 47-232 (386)
91 2kjq_A DNAA-related protein; s 98.2 1.7E-06 5.8E-11 79.6 6.9 68 371-459 38-109 (149)
92 2gno_A DNA polymerase III, gam 98.2 1.2E-06 4.2E-11 90.4 6.4 124 370-532 19-151 (305)
93 1tue_A Replication protein E1; 98.0 6.8E-06 2.3E-10 79.3 5.8 110 371-510 60-171 (212)
94 3ec2_A DNA replication protein 97.7 2.9E-06 9.9E-11 80.1 -1.6 97 371-486 40-143 (180)
95 1u0j_A DNA replication protein 97.7 0.0002 6.8E-09 72.0 11.2 114 371-510 106-222 (267)
96 1w5s_A Origin recognition comp 97.5 0.00011 3.6E-09 78.2 6.3 102 435-562 140-250 (412)
97 2r2a_A Uncharacterized protein 97.4 0.00052 1.8E-08 66.1 9.1 122 371-518 7-152 (199)
98 2qgz_A Helicase loader, putati 97.2 2.1E-05 7.3E-10 81.2 -2.3 25 370-394 153-177 (308)
99 2orw_A Thymidine kinase; TMTK, 96.8 0.0016 5.4E-08 61.8 6.1 26 434-459 77-102 (184)
100 1ye8_A Protein THEP1, hypothet 96.6 0.00079 2.7E-08 63.5 2.9 24 371-394 2-25 (178)
101 2w58_A DNAI, primosome compone 95.8 0.0039 1.3E-07 59.3 2.8 24 371-394 56-79 (202)
102 3upu_A ATP-dependent DNA helic 95.6 0.013 4.6E-07 63.4 6.7 87 371-458 47-153 (459)
103 1jr3_D DNA polymerase III, del 95.6 0.015 5.2E-07 60.2 6.7 130 371-533 20-155 (343)
104 1kag_A SKI, shikimate kinase I 95.4 0.0086 3E-07 55.2 3.4 25 371-395 6-30 (173)
105 1qhx_A CPT, protein (chloramph 95.4 0.01 3.4E-07 55.0 3.9 27 371-397 5-31 (178)
106 3trf_A Shikimate kinase, SK; a 95.2 0.009 3.1E-07 55.8 3.1 28 371-398 7-34 (185)
107 1via_A Shikimate kinase; struc 95.2 0.0094 3.2E-07 55.3 3.2 28 371-398 6-33 (175)
108 1zuh_A Shikimate kinase; alpha 95.1 0.01 3.5E-07 54.5 3.1 29 371-399 9-37 (168)
109 3kb2_A SPBC2 prophage-derived 95.1 0.013 4.6E-07 53.6 3.9 26 371-396 3-28 (173)
110 3vaa_A Shikimate kinase, SK; s 95.0 0.012 4.1E-07 56.0 3.2 27 371-397 27-53 (199)
111 3e1s_A Exodeoxyribonuclease V, 95.0 0.014 4.9E-07 65.1 4.2 86 371-458 206-304 (574)
112 3dl0_A Adenylate kinase; phosp 94.9 0.014 4.9E-07 56.0 3.4 29 371-399 2-30 (216)
113 3iij_A Coilin-interacting nucl 94.8 0.013 4.6E-07 54.4 3.1 29 371-399 13-41 (180)
114 1ly1_A Polynucleotide kinase; 94.6 0.016 5.6E-07 53.4 3.1 21 371-391 4-24 (181)
115 2iyv_A Shikimate kinase, SK; t 94.6 0.016 5.6E-07 54.0 3.1 29 371-399 4-32 (184)
116 3cm0_A Adenylate kinase; ATP-b 94.6 0.015 5.2E-07 54.2 2.8 28 370-397 5-32 (186)
117 3lw7_A Adenylate kinase relate 94.6 0.018 6.1E-07 52.5 3.3 27 371-398 3-29 (179)
118 3fb4_A Adenylate kinase; psych 94.5 0.017 5.9E-07 55.3 3.2 29 371-399 2-30 (216)
119 1y63_A LMAJ004144AAA protein; 94.5 0.019 6.6E-07 53.8 3.2 29 370-398 11-40 (184)
120 3t61_A Gluconokinase; PSI-biol 94.5 0.023 7.7E-07 54.0 3.8 25 371-395 20-44 (202)
121 1aky_A Adenylate kinase; ATP:A 94.4 0.02 7E-07 55.1 3.4 29 370-398 5-33 (220)
122 1w36_D RECD, exodeoxyribonucle 94.4 0.034 1.2E-06 62.5 5.6 23 371-393 166-188 (608)
123 1e6c_A Shikimate kinase; phosp 94.4 0.021 7.1E-07 52.5 3.1 28 371-398 4-31 (173)
124 2ze6_A Isopentenyl transferase 94.3 0.027 9.2E-07 55.9 4.1 29 371-399 3-31 (253)
125 2bdt_A BH3686; alpha-beta prot 94.3 0.024 8.1E-07 53.1 3.5 24 371-394 4-27 (189)
126 3sr0_A Adenylate kinase; phosp 94.3 0.021 7.3E-07 55.0 3.1 31 371-401 2-32 (206)
127 1knq_A Gluconate kinase; ALFA/ 94.3 0.027 9.3E-07 51.9 3.7 24 371-394 10-33 (175)
128 1tev_A UMP-CMP kinase; ploop, 94.3 0.022 7.6E-07 53.2 3.1 27 371-397 5-31 (196)
129 2cdn_A Adenylate kinase; phosp 94.3 0.022 7.6E-07 54.0 3.2 30 370-399 21-50 (201)
130 3tr0_A Guanylate kinase, GMP k 94.2 0.033 1.1E-06 52.7 4.3 24 371-394 9-32 (205)
131 1kht_A Adenylate kinase; phosp 94.2 0.022 7.5E-07 53.1 3.0 25 370-394 4-28 (192)
132 4eun_A Thermoresistant glucoki 94.2 0.029 1E-06 53.2 3.8 24 371-394 31-54 (200)
133 3jvv_A Twitching mobility prot 94.2 0.045 1.5E-06 57.3 5.5 24 371-394 125-148 (356)
134 1zp6_A Hypothetical protein AT 94.1 0.019 6.7E-07 53.7 2.4 23 371-393 11-33 (191)
135 2pt5_A Shikimate kinase, SK; a 94.1 0.026 8.7E-07 51.6 3.1 28 371-398 2-29 (168)
136 2vli_A Antibiotic resistance p 94.0 0.027 9.3E-07 52.2 3.2 28 371-398 7-34 (183)
137 2c95_A Adenylate kinase 1; tra 94.0 0.022 7.7E-07 53.3 2.6 28 371-398 11-38 (196)
138 2rhm_A Putative kinase; P-loop 94.0 0.028 9.5E-07 52.5 3.2 24 371-394 7-30 (193)
139 1cke_A CK, MSSA, protein (cyti 94.0 0.028 9.7E-07 54.1 3.3 29 371-399 7-35 (227)
140 1nks_A Adenylate kinase; therm 93.9 0.022 7.4E-07 53.1 2.2 24 371-394 3-26 (194)
141 1ak2_A Adenylate kinase isoenz 93.9 0.028 9.7E-07 54.8 3.1 30 370-399 17-46 (233)
142 2bwj_A Adenylate kinase 5; pho 93.8 0.025 8.7E-07 53.1 2.6 28 371-398 14-41 (199)
143 1kgd_A CASK, peripheral plasma 93.8 0.034 1.2E-06 51.9 3.3 24 371-394 7-30 (180)
144 1zd8_A GTP:AMP phosphotransfer 93.8 0.029 9.8E-07 54.4 2.9 28 371-398 9-36 (227)
145 1e4v_A Adenylate kinase; trans 93.8 0.026 8.9E-07 54.2 2.6 29 371-399 2-30 (214)
146 2qor_A Guanylate kinase; phosp 93.7 0.034 1.2E-06 52.9 3.4 25 370-394 13-37 (204)
147 2bbw_A Adenylate kinase 4, AK4 93.7 0.028 9.7E-07 55.2 2.8 23 371-393 29-51 (246)
148 1qf9_A UMP/CMP kinase, protein 93.7 0.028 9.5E-07 52.4 2.6 28 371-398 8-35 (194)
149 3umf_A Adenylate kinase; rossm 93.7 0.031 1.1E-06 54.3 2.9 29 371-399 31-59 (217)
150 1ukz_A Uridylate kinase; trans 93.6 0.036 1.2E-06 52.4 3.4 29 371-399 17-45 (203)
151 3tlx_A Adenylate kinase 2; str 93.6 0.033 1.1E-06 54.8 3.2 31 370-400 30-60 (243)
152 2xb4_A Adenylate kinase; ATP-b 93.6 0.034 1.2E-06 53.9 3.2 29 371-399 2-30 (223)
153 3be4_A Adenylate kinase; malar 93.6 0.031 1.1E-06 53.9 2.8 30 370-399 6-35 (217)
154 2jaq_A Deoxyguanosine kinase; 93.5 0.042 1.4E-06 51.7 3.6 25 371-395 2-26 (205)
155 1gvn_B Zeta; postsegregational 93.5 0.047 1.6E-06 55.3 4.1 24 371-394 35-58 (287)
156 2plr_A DTMP kinase, probable t 93.4 0.038 1.3E-06 52.3 3.1 24 371-394 6-29 (213)
157 2ihy_A ABC transporter, ATP-bi 93.4 0.069 2.4E-06 53.9 5.1 41 345-394 32-72 (279)
158 3uie_A Adenylyl-sulfate kinase 93.3 0.035 1.2E-06 52.7 2.7 24 371-394 27-50 (200)
159 1zak_A Adenylate kinase; ATP:A 93.3 0.028 9.7E-07 54.2 2.0 26 370-395 6-31 (222)
160 2j41_A Guanylate kinase; GMP, 93.3 0.043 1.5E-06 51.8 3.2 23 371-393 8-30 (207)
161 3tau_A Guanylate kinase, GMP k 93.1 0.049 1.7E-06 52.2 3.3 25 371-395 10-34 (208)
162 3q85_A GTP-binding protein REM 93.1 0.047 1.6E-06 49.4 3.0 24 369-392 2-25 (169)
163 2p5t_B PEZT; postsegregational 92.9 0.041 1.4E-06 54.5 2.5 24 371-394 34-57 (253)
164 3lxx_A GTPase IMAP family memb 92.7 0.21 7.1E-06 48.6 7.3 24 369-392 29-52 (239)
165 2if2_A Dephospho-COA kinase; a 92.6 0.054 1.8E-06 51.3 2.9 23 371-394 3-25 (204)
166 2yvu_A Probable adenylyl-sulfa 92.6 0.055 1.9E-06 50.5 2.9 25 370-394 14-38 (186)
167 1z2a_A RAS-related protein RAB 92.6 0.061 2.1E-06 48.4 3.1 23 370-392 6-28 (168)
168 3a00_A Guanylate kinase, GMP k 92.6 0.061 2.1E-06 50.4 3.2 25 371-395 3-27 (186)
169 2zu0_C Probable ATP-dependent 92.6 0.11 3.7E-06 52.0 5.1 39 345-392 31-69 (267)
170 1kao_A RAP2A; GTP-binding prot 92.6 0.065 2.2E-06 48.0 3.2 23 370-392 4-26 (167)
171 3c8u_A Fructokinase; YP_612366 92.6 0.052 1.8E-06 51.9 2.6 24 371-394 24-47 (208)
172 2pcj_A ABC transporter, lipopr 92.5 0.092 3.2E-06 51.1 4.5 24 371-394 32-55 (224)
173 1b0u_A Histidine permease; ABC 92.5 0.11 3.8E-06 51.8 5.1 41 345-394 17-57 (262)
174 1jjv_A Dephospho-COA kinase; P 92.5 0.064 2.2E-06 50.9 3.2 21 371-391 4-24 (206)
175 3t1o_A Gliding protein MGLA; G 92.5 0.069 2.4E-06 49.5 3.3 25 370-394 15-39 (198)
176 4e22_A Cytidylate kinase; P-lo 92.4 0.071 2.4E-06 52.7 3.6 31 371-401 29-59 (252)
177 1z0j_A RAB-22, RAS-related pro 92.4 0.069 2.4E-06 48.1 3.2 23 370-392 7-29 (170)
178 4a74_A DNA repair and recombin 92.4 0.082 2.8E-06 50.7 3.9 22 371-392 27-48 (231)
179 3r20_A Cytidylate kinase; stru 92.4 0.066 2.3E-06 52.6 3.2 32 370-401 10-41 (233)
180 2z0h_A DTMP kinase, thymidylat 92.4 0.081 2.8E-06 49.5 3.7 22 372-393 3-24 (197)
181 2v54_A DTMP kinase, thymidylat 92.4 0.073 2.5E-06 50.1 3.4 24 370-393 5-28 (204)
182 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.065 2.2E-06 53.3 3.1 22 371-392 6-27 (260)
183 1ek0_A Protein (GTP-binding pr 92.4 0.069 2.4E-06 48.0 3.1 23 370-392 4-26 (170)
184 2erx_A GTP-binding protein DI- 92.4 0.067 2.3E-06 48.2 3.0 24 369-392 3-26 (172)
185 1z08_A RAS-related protein RAB 92.3 0.071 2.4E-06 48.1 3.2 23 370-392 7-29 (170)
186 2pbr_A DTMP kinase, thymidylat 92.3 0.068 2.3E-06 49.8 3.1 23 371-393 2-24 (195)
187 2nzj_A GTP-binding protein REM 92.3 0.07 2.4E-06 48.4 3.0 23 370-392 5-27 (175)
188 3nwj_A ATSK2; P loop, shikimat 92.3 0.073 2.5E-06 52.8 3.4 29 371-399 50-78 (250)
189 1lvg_A Guanylate kinase, GMP k 92.3 0.069 2.4E-06 50.7 3.1 24 371-394 6-29 (198)
190 1u8z_A RAS-related protein RAL 92.2 0.073 2.5E-06 47.7 3.1 23 370-392 5-27 (168)
191 1g6h_A High-affinity branched- 92.2 0.11 3.8E-06 51.6 4.7 24 371-394 35-58 (257)
192 1r8s_A ADP-ribosylation factor 92.2 0.075 2.6E-06 47.7 3.1 23 370-392 1-23 (164)
193 1c1y_A RAS-related protein RAP 92.2 0.076 2.6E-06 47.7 3.1 23 370-392 4-26 (167)
194 2wwf_A Thymidilate kinase, put 92.2 0.054 1.8E-06 51.4 2.2 24 371-394 12-35 (212)
195 2b8t_A Thymidine kinase; deoxy 92.1 0.16 5.6E-06 49.4 5.6 22 371-392 14-35 (223)
196 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.077 2.6E-06 48.3 3.2 23 370-392 8-30 (177)
197 2xtp_A GTPase IMAP family memb 92.1 0.13 4.5E-06 50.6 5.0 24 369-392 22-45 (260)
198 4g1u_C Hemin import ATP-bindin 92.1 0.12 4.3E-06 51.6 4.8 41 345-394 22-62 (266)
199 1r2q_A RAS-related protein RAB 92.1 0.079 2.7E-06 47.6 3.1 23 370-392 7-29 (170)
200 2f9l_A RAB11B, member RAS onco 92.1 0.075 2.6E-06 50.0 3.1 24 370-393 6-29 (199)
201 1znw_A Guanylate kinase, GMP k 92.0 0.081 2.8E-06 50.4 3.3 24 371-394 22-45 (207)
202 3vkw_A Replicase large subunit 92.0 0.029 1E-06 60.2 0.1 90 372-462 164-263 (446)
203 3ake_A Cytidylate kinase; CMP 92.0 0.077 2.6E-06 50.1 3.1 30 371-400 4-33 (208)
204 2hxs_A RAB-26, RAS-related pro 92.0 0.082 2.8E-06 48.2 3.1 23 370-392 7-29 (178)
205 2qt1_A Nicotinamide riboside k 92.0 0.084 2.9E-06 50.1 3.3 24 371-394 23-46 (207)
206 1ex7_A Guanylate kinase; subst 92.0 0.11 3.8E-06 49.1 4.1 26 371-396 3-28 (186)
207 1htw_A HI0065; nucleotide-bind 91.9 0.088 3E-06 48.3 3.3 24 371-394 35-58 (158)
208 4gp7_A Metallophosphoesterase; 91.9 0.068 2.3E-06 49.4 2.5 19 371-389 11-29 (171)
209 3bc1_A RAS-related protein RAB 91.9 0.082 2.8E-06 48.7 3.1 23 370-392 12-34 (195)
210 2zej_A Dardarin, leucine-rich 91.9 0.067 2.3E-06 49.6 2.5 23 370-392 3-25 (184)
211 3crm_A TRNA delta(2)-isopenten 91.9 0.13 4.4E-06 53.0 4.8 30 371-400 7-36 (323)
212 2olj_A Amino acid ABC transpor 91.9 0.15 5.1E-06 51.0 5.1 24 371-394 52-75 (263)
213 1vpl_A ABC transporter, ATP-bi 91.9 0.15 5.1E-06 50.7 5.1 24 371-394 43-66 (256)
214 3k53_A Ferrous iron transport 91.9 0.16 5.3E-06 50.7 5.3 23 370-392 4-26 (271)
215 1ji0_A ABC transporter; ATP bi 91.9 0.14 4.9E-06 50.3 4.9 24 371-394 34-57 (240)
216 1g16_A RAS-related protein SEC 91.9 0.072 2.5E-06 48.0 2.6 23 370-392 4-26 (170)
217 2dyk_A GTP-binding protein; GT 91.8 0.089 3.1E-06 47.0 3.1 22 371-392 3-24 (161)
218 1ky3_A GTP-binding protein YPT 91.8 0.089 3E-06 48.0 3.2 24 369-392 8-31 (182)
219 1z0f_A RAB14, member RAS oncog 91.8 0.089 3E-06 47.8 3.1 23 370-392 16-38 (179)
220 1nn5_A Similar to deoxythymidy 91.7 0.064 2.2E-06 51.0 2.2 25 370-394 10-34 (215)
221 2ce2_X GTPase HRAS; signaling 91.7 0.076 2.6E-06 47.4 2.6 23 370-392 4-26 (166)
222 3q72_A GTP-binding protein RAD 91.7 0.07 2.4E-06 48.0 2.3 22 370-391 3-24 (166)
223 3ney_A 55 kDa erythrocyte memb 91.6 0.12 4.1E-06 49.3 3.9 25 371-395 21-45 (197)
224 2ff7_A Alpha-hemolysin translo 91.6 0.15 5E-06 50.5 4.7 24 371-394 37-60 (247)
225 1z6g_A Guanylate kinase; struc 91.6 0.095 3.3E-06 50.6 3.3 24 371-394 25-48 (218)
226 1ltq_A Polynucleotide kinase; 91.6 0.12 4E-06 52.2 4.1 23 371-393 4-26 (301)
227 2ehv_A Hypothetical protein PH 91.5 0.089 3E-06 51.1 3.0 20 371-390 32-51 (251)
228 2wji_A Ferrous iron transport 91.5 0.088 3E-06 47.9 2.8 23 370-392 4-26 (165)
229 2oil_A CATX-8, RAS-related pro 91.5 0.095 3.2E-06 48.7 3.1 23 370-392 26-48 (193)
230 1sgw_A Putative ABC transporte 91.5 0.17 5.7E-06 48.9 4.8 24 371-394 37-60 (214)
231 1nrj_B SR-beta, signal recogni 91.4 0.097 3.3E-06 49.8 3.1 25 369-393 12-36 (218)
232 1upt_A ARL1, ADP-ribosylation 91.4 0.1 3.5E-06 47.1 3.1 23 370-392 8-30 (171)
233 2efe_B Small GTP-binding prote 91.4 0.1 3.6E-06 47.6 3.2 23 370-392 13-35 (181)
234 2g6b_A RAS-related protein RAB 91.4 0.1 3.5E-06 47.6 3.1 23 370-392 11-33 (180)
235 1s96_A Guanylate kinase, GMP k 91.3 0.11 3.7E-06 50.4 3.4 24 371-394 18-41 (219)
236 2vhj_A Ntpase P4, P4; non- hyd 91.3 0.096 3.3E-06 53.9 3.1 22 371-392 125-146 (331)
237 2iwr_A Centaurin gamma 1; ANK 91.3 0.084 2.9E-06 48.2 2.5 23 370-392 8-30 (178)
238 1m7g_A Adenylylsulfate kinase; 91.3 0.088 3E-06 50.3 2.7 24 371-394 27-50 (211)
239 3kkq_A RAS-related protein M-R 91.3 0.1 3.6E-06 47.8 3.1 24 369-392 18-41 (183)
240 3tw8_B RAS-related protein RAB 91.3 0.098 3.3E-06 47.6 2.9 22 370-391 10-31 (181)
241 3asz_A Uridine kinase; cytidin 91.3 0.083 2.9E-06 50.2 2.5 24 371-394 8-31 (211)
242 3a8t_A Adenylate isopentenyltr 91.3 0.16 5.4E-06 52.6 4.7 32 371-402 42-73 (339)
243 4dsu_A GTPase KRAS, isoform 2B 91.3 0.11 3.7E-06 47.8 3.2 23 370-392 5-27 (189)
244 2w0m_A SSO2452; RECA, SSPF, un 91.3 0.1 3.5E-06 49.9 3.1 22 371-392 25-46 (235)
245 3clv_A RAB5 protein, putative; 91.2 0.12 4E-06 47.9 3.4 24 369-392 7-30 (208)
246 3tif_A Uncharacterized ABC tra 91.2 0.17 5.7E-06 49.6 4.6 24 371-394 33-56 (235)
247 3sop_A Neuronal-specific septi 91.2 0.083 2.8E-06 53.0 2.5 25 370-394 3-27 (270)
248 3gfo_A Cobalt import ATP-bindi 91.2 0.17 6E-06 50.8 4.8 25 371-395 36-60 (275)
249 2pez_A Bifunctional 3'-phospho 91.1 0.12 4E-06 47.9 3.3 23 371-393 7-29 (179)
250 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.11 3.8E-06 47.6 3.1 23 370-392 6-28 (186)
251 3lxw_A GTPase IMAP family memb 91.1 0.22 7.5E-06 49.0 5.4 25 368-392 20-44 (247)
252 3ihw_A Centg3; RAS, centaurin, 91.1 0.11 3.9E-06 48.2 3.2 24 369-392 20-43 (184)
253 3c5c_A RAS-like protein 12; GD 91.1 0.11 3.9E-06 48.2 3.2 23 370-392 22-44 (187)
254 2fn4_A P23, RAS-related protei 91.1 0.098 3.3E-06 47.6 2.7 23 370-392 10-32 (181)
255 1oix_A RAS-related protein RAB 91.1 0.097 3.3E-06 49.0 2.7 24 370-393 30-53 (191)
256 2grj_A Dephospho-COA kinase; T 91.1 0.11 3.8E-06 49.2 3.1 29 371-399 14-42 (192)
257 2ged_A SR-beta, signal recogni 91.0 0.13 4.3E-06 47.8 3.4 24 369-392 48-71 (193)
258 2fz4_A DNA repair protein RAD2 91.0 0.21 7.1E-06 48.9 5.1 23 371-393 110-132 (237)
259 2nq2_C Hypothetical ABC transp 91.0 0.17 5.8E-06 50.2 4.5 24 371-394 33-56 (253)
260 2gj8_A MNME, tRNA modification 91.0 0.097 3.3E-06 48.1 2.5 23 370-392 5-27 (172)
261 2atv_A RERG, RAS-like estrogen 91.0 0.12 4.1E-06 48.2 3.3 24 369-392 28-51 (196)
262 2y8e_A RAB-protein 6, GH09086P 91.0 0.099 3.4E-06 47.5 2.6 23 370-392 15-37 (179)
263 2lkc_A Translation initiation 91.0 0.11 3.9E-06 47.2 3.0 24 369-392 8-31 (178)
264 3bwd_D RAC-like GTP-binding pr 91.0 0.12 4.1E-06 47.2 3.1 24 369-392 8-31 (182)
265 3con_A GTPase NRAS; structural 90.9 0.12 4.1E-06 47.8 3.1 23 370-392 22-44 (190)
266 1svm_A Large T antigen; AAA+ f 90.9 0.12 4.2E-06 54.4 3.5 23 371-393 171-193 (377)
267 3rlf_A Maltose/maltodextrin im 90.9 0.22 7.5E-06 52.4 5.5 41 345-394 14-54 (381)
268 2a9k_A RAS-related protein RAL 90.9 0.12 4.1E-06 47.3 3.1 23 370-392 19-41 (187)
269 2gf9_A RAS-related protein RAB 90.9 0.12 4.1E-06 47.9 3.1 23 370-392 23-45 (189)
270 2cvh_A DNA repair and recombin 90.9 0.12 4E-06 49.2 3.1 21 371-391 22-42 (220)
271 2wjg_A FEOB, ferrous iron tran 90.9 0.11 3.9E-06 47.8 3.0 23 370-392 8-30 (188)
272 1n0w_A DNA repair protein RAD5 90.9 0.11 3.8E-06 50.2 3.0 21 371-391 26-46 (243)
273 2gf0_A GTP-binding protein DI- 90.9 0.11 3.8E-06 48.3 2.9 24 369-392 8-31 (199)
274 3reg_A RHO-like small GTPase; 90.9 0.12 4.1E-06 48.1 3.1 23 370-392 24-46 (194)
275 1m7b_A RND3/RHOE small GTP-bin 90.9 0.1 3.5E-06 48.2 2.6 23 370-392 8-30 (184)
276 2d2e_A SUFC protein; ABC-ATPas 90.8 0.21 7.2E-06 49.3 5.0 22 371-392 31-52 (250)
277 1zd9_A ADP-ribosylation factor 90.8 0.12 4.2E-06 47.9 3.1 24 369-392 22-45 (188)
278 2cxx_A Probable GTP-binding pr 90.8 0.089 3E-06 48.5 2.1 23 370-392 2-24 (190)
279 2pze_A Cystic fibrosis transme 90.8 0.14 4.7E-06 50.0 3.5 24 371-394 36-59 (229)
280 1z06_A RAS-related protein RAB 90.8 0.13 4.3E-06 47.7 3.2 23 370-392 21-43 (189)
281 1uf9_A TT1252 protein; P-loop, 90.8 0.11 3.9E-06 48.7 2.9 22 371-392 10-31 (203)
282 3fvq_A Fe(3+) IONS import ATP- 90.7 0.2 6.9E-06 52.3 4.9 42 345-395 15-56 (359)
283 1mv5_A LMRA, multidrug resista 90.7 0.14 4.7E-06 50.5 3.4 24 371-394 30-53 (243)
284 2bme_A RAB4A, RAS-related prot 90.7 0.11 3.7E-06 47.8 2.6 23 370-392 11-33 (186)
285 2ga8_A Hypothetical 39.9 kDa p 90.7 0.11 3.7E-06 54.2 2.7 25 371-395 26-50 (359)
286 2yyz_A Sugar ABC transporter, 90.7 0.23 8E-06 51.9 5.3 24 371-394 31-54 (359)
287 2bov_A RAla, RAS-related prote 90.7 0.13 4.4E-06 48.1 3.1 23 370-392 15-37 (206)
288 1zbd_A Rabphilin-3A; G protein 90.7 0.12 4.2E-06 48.4 3.0 23 370-392 9-31 (203)
289 3tkl_A RAS-related protein RAB 90.7 0.13 4.5E-06 47.7 3.1 23 370-392 17-39 (196)
290 2i3b_A HCR-ntpase, human cance 90.6 0.11 3.9E-06 49.1 2.7 24 371-394 3-26 (189)
291 2cbz_A Multidrug resistance-as 90.6 0.14 4.7E-06 50.3 3.4 24 371-394 33-56 (237)
292 1vg8_A RAS-related protein RAB 90.6 0.13 4.5E-06 48.2 3.2 23 370-392 9-31 (207)
293 1q3t_A Cytidylate kinase; nucl 90.6 0.13 4.5E-06 50.0 3.2 32 370-401 17-48 (236)
294 1x3s_A RAS-related protein RAB 90.6 0.13 4.6E-06 47.5 3.1 23 370-392 16-38 (195)
295 1uj2_A Uridine-cytidine kinase 90.5 0.18 6.1E-06 49.6 4.1 26 370-395 23-48 (252)
296 2a5j_A RAS-related protein RAB 90.5 0.13 4.6E-06 47.7 3.1 23 370-392 22-44 (191)
297 1vht_A Dephospho-COA kinase; s 90.5 0.15 5E-06 48.8 3.4 22 370-391 5-26 (218)
298 1svi_A GTP-binding protein YSX 90.5 0.11 3.8E-06 48.2 2.5 24 369-392 23-46 (195)
299 2fg5_A RAB-22B, RAS-related pr 90.5 0.12 4.1E-06 48.2 2.7 23 370-392 24-46 (192)
300 2yz2_A Putative ABC transporte 90.4 0.25 8.4E-06 49.3 5.1 25 371-395 35-59 (266)
301 2qmh_A HPR kinase/phosphorylas 90.4 0.16 5.5E-06 48.5 3.5 24 371-394 36-59 (205)
302 1v43_A Sugar-binding transport 90.4 0.25 8.7E-06 51.8 5.4 25 371-395 39-63 (372)
303 2h92_A Cytidylate kinase; ross 90.4 0.16 5.5E-06 48.5 3.6 32 370-401 4-35 (219)
304 2it1_A 362AA long hypothetical 90.4 0.24 8.2E-06 51.8 5.1 24 371-394 31-54 (362)
305 1ksh_A ARF-like protein 2; sma 90.4 0.12 4.2E-06 47.6 2.6 24 369-392 18-41 (186)
306 2p5s_A RAS and EF-hand domain 90.4 0.14 4.8E-06 48.0 3.1 24 369-392 28-51 (199)
307 3t5g_A GTP-binding protein RHE 90.4 0.12 4.2E-06 47.3 2.6 23 370-392 7-29 (181)
308 2cjw_A GTP-binding protein GEM 90.3 0.14 4.9E-06 47.9 3.1 22 370-391 7-28 (192)
309 3lnc_A Guanylate kinase, GMP k 90.3 0.096 3.3E-06 50.8 1.9 25 371-395 29-54 (231)
310 3dz8_A RAS-related protein RAB 90.3 0.12 4.2E-06 48.0 2.6 23 370-392 24-46 (191)
311 3gd7_A Fusion complex of cysti 90.2 0.17 5.9E-06 53.5 3.9 24 371-394 49-72 (390)
312 1g29_1 MALK, maltose transport 90.2 0.25 8.6E-06 51.9 5.2 24 371-394 31-54 (372)
313 2fu5_C RAS-related protein RAB 90.2 0.095 3.2E-06 48.1 1.7 22 370-391 9-30 (183)
314 2onk_A Molybdate/tungstate ABC 90.2 0.15 5.2E-06 50.1 3.2 24 371-394 26-49 (240)
315 3oes_A GTPase rhebl1; small GT 90.1 0.13 4.4E-06 48.3 2.6 24 369-392 24-47 (201)
316 2bcg_Y Protein YP2, GTP-bindin 90.1 0.13 4.5E-06 48.4 2.6 23 370-392 9-31 (206)
317 2v9p_A Replication protein E1; 89.9 0.15 5.2E-06 52.0 3.1 23 371-393 128-150 (305)
318 3cph_A RAS-related protein SEC 89.9 0.16 5.6E-06 47.8 3.1 24 369-392 20-43 (213)
319 2eyu_A Twitching motility prot 89.8 0.14 4.8E-06 51.0 2.7 24 371-394 27-50 (261)
320 2q3h_A RAS homolog gene family 89.8 0.15 5.1E-06 47.7 2.8 24 369-392 20-43 (201)
321 1m2o_B GTP-binding protein SAR 89.8 0.14 4.9E-06 47.7 2.6 23 370-392 24-46 (190)
322 3d31_A Sulfate/molybdate ABC t 89.8 0.24 8.4E-06 51.5 4.6 24 371-394 28-51 (348)
323 1pzn_A RAD51, DNA repair and r 89.8 0.19 6.6E-06 52.2 3.9 23 371-393 133-155 (349)
324 2il1_A RAB12; G-protein, GDP, 89.7 0.16 5.4E-06 47.4 2.8 23 370-392 27-49 (192)
325 1zj6_A ADP-ribosylation factor 89.7 0.14 4.8E-06 47.3 2.4 24 369-392 16-39 (187)
326 2jeo_A Uridine-cytidine kinase 89.7 0.18 6.1E-06 49.4 3.3 24 371-394 27-50 (245)
327 2h17_A ADP-ribosylation factor 89.6 0.12 4.2E-06 47.5 2.0 24 369-392 21-44 (181)
328 2f7s_A C25KG, RAS-related prot 89.6 0.17 5.7E-06 48.0 3.0 23 370-392 26-48 (217)
329 1gtv_A TMK, thymidylate kinase 89.6 0.075 2.6E-06 50.5 0.5 24 371-394 2-25 (214)
330 1gwn_A RHO-related GTP-binding 89.6 0.15 5.2E-06 48.4 2.6 23 370-392 29-51 (205)
331 3cbq_A GTP-binding protein REM 89.6 0.14 4.8E-06 48.1 2.3 23 369-391 23-45 (195)
332 3pqc_A Probable GTP-binding pr 89.6 0.15 5E-06 47.1 2.5 24 369-392 23-46 (195)
333 2ew1_A RAS-related protein RAB 89.5 0.15 5.2E-06 48.2 2.6 23 370-392 27-49 (201)
334 3nh6_A ATP-binding cassette SU 89.5 0.25 8.6E-06 50.4 4.4 44 343-395 63-106 (306)
335 2ixe_A Antigen peptide transpo 89.5 0.21 7.3E-06 50.0 3.8 25 371-395 47-71 (271)
336 3d3q_A TRNA delta(2)-isopenten 89.5 0.24 8.1E-06 51.3 4.2 28 371-398 9-36 (340)
337 4eaq_A DTMP kinase, thymidylat 89.5 0.18 6.1E-06 49.1 3.1 25 370-394 27-51 (229)
338 2o52_A RAS-related protein RAB 89.4 0.14 4.8E-06 48.1 2.3 23 370-392 26-48 (200)
339 3b85_A Phosphate starvation-in 89.4 0.17 5.9E-06 48.5 2.9 22 371-392 24-45 (208)
340 2fh5_B SR-beta, signal recogni 89.4 0.19 6.4E-06 47.6 3.1 24 369-392 7-30 (214)
341 1fzq_A ADP-ribosylation factor 89.3 0.16 5.5E-06 46.9 2.6 24 369-392 16-39 (181)
342 3llu_A RAS-related GTP-binding 89.3 0.15 5.1E-06 47.8 2.3 24 369-392 20-43 (196)
343 2qi9_C Vitamin B12 import ATP- 89.3 0.26 8.9E-06 48.7 4.1 24 371-394 28-51 (249)
344 3foz_A TRNA delta(2)-isopenten 89.2 0.32 1.1E-05 49.7 4.8 28 371-398 12-39 (316)
345 1moz_A ARL1, ADP-ribosylation 89.2 0.12 3.9E-06 47.5 1.4 22 369-390 18-39 (183)
346 1z47_A CYSA, putative ABC-tran 89.2 0.21 7.2E-06 52.1 3.5 24 371-394 43-66 (355)
347 2atx_A Small GTP binding prote 89.1 0.18 6E-06 46.9 2.7 23 370-392 19-41 (194)
348 3q3j_B RHO-related GTP-binding 89.1 0.21 7.1E-06 47.6 3.2 24 369-392 27-50 (214)
349 3exa_A TRNA delta(2)-isopenten 89.1 0.27 9.1E-06 50.4 4.1 27 371-397 5-31 (322)
350 2hup_A RAS-related protein RAB 89.1 0.18 6E-06 47.5 2.7 23 370-392 30-52 (201)
351 3zvl_A Bifunctional polynucleo 89.1 0.19 6.6E-06 53.6 3.2 23 371-393 260-282 (416)
352 1rz3_A Hypothetical protein rb 89.1 0.15 5.3E-06 48.2 2.2 24 371-394 24-47 (201)
353 3aez_A Pantothenate kinase; tr 89.0 0.18 6.1E-06 51.7 2.8 26 370-395 91-116 (312)
354 2gco_A H9, RHO-related GTP-bin 89.0 0.18 6.1E-06 47.4 2.6 23 370-392 26-48 (201)
355 2dr3_A UPF0273 protein PH0284; 89.0 0.18 6E-06 48.8 2.6 21 371-391 25-45 (247)
356 4gzl_A RAS-related C3 botulinu 89.0 0.18 6.3E-06 47.5 2.7 24 369-392 30-53 (204)
357 2j0v_A RAC-like GTP-binding pr 88.9 0.18 6.1E-06 47.6 2.6 23 370-392 10-32 (212)
358 2b6h_A ADP-ribosylation factor 88.9 0.17 5.9E-06 47.2 2.4 23 369-391 29-51 (192)
359 2j1l_A RHO-related GTP-binding 88.8 0.18 6.1E-06 48.0 2.5 22 370-391 35-56 (214)
360 2r8r_A Sensor protein; KDPD, P 88.8 0.22 7.6E-06 48.5 3.1 25 368-392 5-29 (228)
361 2fv8_A H6, RHO-related GTP-bin 88.8 0.19 6.5E-06 47.4 2.7 23 370-392 26-48 (207)
362 3cpj_B GTP-binding protein YPT 88.7 0.22 7.5E-06 47.7 3.1 23 370-392 14-36 (223)
363 2h57_A ADP-ribosylation factor 88.6 0.15 5.2E-06 47.2 1.9 24 369-392 21-44 (190)
364 1cr0_A DNA primase/helicase; R 88.6 0.19 6.4E-06 50.6 2.6 23 371-393 37-59 (296)
365 2pjz_A Hypothetical protein ST 88.6 0.37 1.3E-05 48.0 4.7 23 371-393 32-54 (263)
366 2ghi_A Transport protein; mult 88.4 0.32 1.1E-05 48.3 4.2 24 371-394 48-71 (260)
367 2oap_1 GSPE-2, type II secreti 88.4 0.21 7.3E-06 54.7 3.1 25 371-395 262-286 (511)
368 2g3y_A GTP-binding protein GEM 88.3 0.24 8.3E-06 47.5 3.0 22 370-391 38-59 (211)
369 4bas_A ADP-ribosylation factor 88.3 0.23 8E-06 46.0 2.9 24 369-392 17-40 (199)
370 3a1s_A Iron(II) transport prot 88.2 0.24 8.1E-06 49.2 3.0 23 370-392 6-28 (258)
371 2qen_A Walker-type ATPase; unk 88.1 0.25 8.4E-06 50.4 3.1 28 371-399 33-60 (350)
372 1lw7_A Transcriptional regulat 88.1 0.25 8.6E-06 51.5 3.3 24 371-394 172-195 (365)
373 2zts_A Putative uncharacterize 88.0 0.25 8.6E-06 47.8 3.0 20 371-390 32-51 (251)
374 2pt7_A CAG-ALFA; ATPase, prote 88.0 0.2 6.8E-06 51.7 2.4 25 371-395 173-197 (330)
375 3kta_A Chromosome segregation 88.0 0.25 8.4E-06 45.6 2.8 24 371-394 28-51 (182)
376 1pui_A ENGB, probable GTP-bind 88.0 0.12 4E-06 48.8 0.6 23 370-392 27-49 (210)
377 1nlf_A Regulatory protein REPA 87.9 0.21 7.2E-06 49.9 2.5 23 371-393 32-54 (279)
378 2qu8_A Putative nucleolar GTP- 87.9 0.24 8.4E-06 47.5 2.9 24 369-392 29-52 (228)
379 2qag_B Septin-6, protein NEDD5 87.9 0.22 7.5E-06 53.2 2.7 22 371-392 44-65 (427)
380 4dkx_A RAS-related protein RAB 87.8 0.28 9.7E-06 47.2 3.2 23 370-392 14-36 (216)
381 3tui_C Methionine import ATP-b 87.8 0.52 1.8E-05 49.3 5.4 25 371-395 56-80 (366)
382 1f6b_A SAR1; gtpases, N-termin 87.7 0.19 6.5E-06 47.2 1.9 22 370-391 26-47 (198)
383 2fna_A Conserved hypothetical 87.6 0.23 7.9E-06 50.7 2.6 24 371-394 32-55 (357)
384 2yc2_C IFT27, small RAB-relate 87.6 0.13 4.5E-06 48.1 0.7 23 370-392 21-43 (208)
385 2ewv_A Twitching motility prot 87.6 0.23 8E-06 52.1 2.6 24 371-394 138-161 (372)
386 3b1v_A Ferrous iron uptake tra 87.5 0.28 9.6E-06 49.1 3.0 23 370-392 4-26 (272)
387 1wf3_A GTP-binding protein; GT 87.4 1 3.6E-05 45.6 7.4 22 371-392 9-30 (301)
388 1yqt_A RNAse L inhibitor; ATP- 87.4 0.38 1.3E-05 53.1 4.3 24 371-394 49-72 (538)
389 2x77_A ADP-ribosylation factor 87.4 0.18 6.1E-06 46.6 1.4 22 369-390 22-43 (189)
390 1oxx_K GLCV, glucose, ABC tran 87.4 0.27 9.3E-06 51.3 3.0 24 371-394 33-56 (353)
391 2gza_A Type IV secretion syste 87.3 0.26 8.9E-06 51.5 2.8 25 371-395 177-201 (361)
392 1xx6_A Thymidine kinase; NESG, 87.3 0.86 2.9E-05 43.0 6.2 21 372-392 11-31 (191)
393 2qnr_A Septin-2, protein NEDD5 87.2 0.22 7.5E-06 50.7 2.1 23 370-392 19-41 (301)
394 2f6r_A COA synthase, bifunctio 87.2 0.27 9.1E-06 49.5 2.7 22 371-392 77-98 (281)
395 1rj9_A FTSY, signal recognitio 87.0 0.28 9.5E-06 50.0 2.8 24 371-394 104-127 (304)
396 2bbs_A Cystic fibrosis transme 87.0 0.3 1E-05 49.5 2.9 24 371-394 66-89 (290)
397 3i8s_A Ferrous iron transport 86.9 0.63 2.2E-05 46.4 5.3 23 370-392 4-26 (274)
398 1sq5_A Pantothenate kinase; P- 86.9 0.27 9.1E-06 50.1 2.6 24 371-394 82-105 (308)
399 1p9r_A General secretion pathw 86.8 0.31 1.1E-05 52.0 3.1 24 371-394 169-192 (418)
400 3iby_A Ferrous iron transport 86.8 0.62 2.1E-05 46.0 5.1 22 371-392 3-24 (256)
401 3lda_A DNA repair protein RAD5 86.8 0.39 1.3E-05 50.9 3.9 20 371-390 180-199 (400)
402 2qag_C Septin-7; cell cycle, c 86.8 0.28 9.7E-06 52.3 2.7 24 370-393 32-55 (418)
403 1odf_A YGR205W, hypothetical 3 86.7 0.3 1E-05 49.5 2.7 25 371-395 33-57 (290)
404 2gmg_A Hypothetical protein PF 86.7 0.4 1.4E-05 40.4 3.0 31 254-291 63-93 (105)
405 1nij_A Hypothetical protein YJ 86.7 1 3.5E-05 45.9 6.9 22 372-393 7-28 (318)
406 1bif_A 6-phosphofructo-2-kinas 86.7 0.34 1.2E-05 52.4 3.4 24 370-393 40-63 (469)
407 3tqc_A Pantothenate kinase; bi 86.6 0.33 1.1E-05 49.9 3.1 24 371-394 94-117 (321)
408 3tqf_A HPR(Ser) kinase; transf 86.5 0.34 1.2E-05 45.2 2.8 24 369-392 16-39 (181)
409 3b9q_A Chloroplast SRP recepto 86.5 0.31 1.1E-05 49.6 2.8 24 371-394 102-125 (302)
410 3hr8_A Protein RECA; alpha and 86.5 0.29 9.9E-06 51.1 2.6 33 371-403 63-99 (356)
411 3iev_A GTP-binding protein ERA 86.5 1.1 3.9E-05 45.4 7.0 22 371-392 12-33 (308)
412 3ice_A Transcription terminati 86.4 0.3 1E-05 51.5 2.6 23 371-393 176-198 (422)
413 4djt_A GTP-binding nuclear pro 86.3 0.15 5.3E-06 48.3 0.3 23 369-391 11-33 (218)
414 2hf9_A Probable hydrogenase ni 86.2 0.32 1.1E-05 46.4 2.6 23 370-392 39-61 (226)
415 3t5d_A Septin-7; GTP-binding p 86.1 0.3 1E-05 48.7 2.4 22 369-390 8-29 (274)
416 3gmt_A Adenylate kinase; ssgci 86.1 0.37 1.3E-05 47.0 3.0 29 371-399 10-38 (230)
417 3e2i_A Thymidine kinase; Zn-bi 85.9 1 3.4E-05 43.5 5.8 87 368-460 28-128 (219)
418 3e70_C DPA, signal recognition 85.8 0.33 1.1E-05 50.1 2.5 24 371-394 131-154 (328)
419 3r7w_A Gtpase1, GTP-binding pr 85.8 0.35 1.2E-05 49.2 2.7 23 370-392 4-26 (307)
420 3eph_A TRNA isopentenyltransfe 85.6 0.43 1.5E-05 50.5 3.4 29 371-399 4-32 (409)
421 2axn_A 6-phosphofructo-2-kinas 85.5 0.38 1.3E-05 52.9 3.0 24 370-393 36-59 (520)
422 2wsm_A Hydrogenase expression/ 85.5 0.37 1.3E-05 45.7 2.6 24 370-393 31-54 (221)
423 3th5_A RAS-related C3 botulinu 85.6 0.16 5.6E-06 47.7 0.0 23 369-391 30-52 (204)
424 2f1r_A Molybdopterin-guanine d 85.3 0.23 8E-06 46.1 1.0 25 371-395 4-28 (171)
425 1np6_A Molybdopterin-guanine d 85.2 0.39 1.3E-05 44.7 2.6 24 371-394 8-31 (174)
426 3gj0_A GTP-binding nuclear pro 85.1 0.3 1E-05 46.5 1.8 24 369-392 15-39 (221)
427 2qm8_A GTPase/ATPase; G protei 85.1 0.48 1.7E-05 48.9 3.4 24 370-393 56-79 (337)
428 4dhe_A Probable GTP-binding pr 85.0 0.26 8.8E-06 46.9 1.2 24 369-392 29-52 (223)
429 2ocp_A DGK, deoxyguanosine kin 85.0 0.53 1.8E-05 45.7 3.5 25 370-394 3-27 (241)
430 1u0l_A Probable GTPase ENGC; p 84.9 0.4 1.4E-05 48.6 2.7 24 371-394 171-194 (301)
431 2i1q_A DNA repair and recombin 84.9 0.54 1.9E-05 47.9 3.7 22 371-392 100-121 (322)
432 1v5w_A DMC1, meiotic recombina 84.8 0.45 1.5E-05 49.3 3.0 22 371-392 124-145 (343)
433 2www_A Methylmalonic aciduria 84.8 0.5 1.7E-05 49.0 3.4 25 369-393 74-98 (349)
434 1p5z_B DCK, deoxycytidine kina 84.7 0.31 1E-05 48.2 1.7 25 370-394 25-49 (263)
435 1mky_A Probable GTP-binding pr 84.7 0.47 1.6E-05 50.9 3.2 23 370-392 181-203 (439)
436 1xjc_A MOBB protein homolog; s 84.5 0.52 1.8E-05 43.7 3.0 24 371-394 6-29 (169)
437 2og2_A Putative signal recogni 84.4 0.44 1.5E-05 49.7 2.8 24 371-394 159-182 (359)
438 1w4r_A Thymidine kinase; type 84.3 0.43 1.5E-05 45.3 2.4 21 372-392 23-44 (195)
439 2rcn_A Probable GTPase ENGC; Y 84.3 0.48 1.6E-05 49.5 2.9 24 371-394 217-240 (358)
440 1f2t_A RAD50 ABC-ATPase; DNA d 84.3 0.55 1.9E-05 42.3 3.0 23 371-393 25-47 (149)
441 2z43_A DNA repair and recombin 84.1 0.42 1.4E-05 49.0 2.5 22 371-392 109-130 (324)
442 2zr9_A Protein RECA, recombina 84.0 0.44 1.5E-05 49.5 2.6 22 371-392 63-84 (349)
443 1ega_A Protein (GTP-binding pr 83.9 0.5 1.7E-05 47.9 2.9 22 371-392 10-31 (301)
444 2hjg_A GTP-binding protein ENG 83.9 0.95 3.2E-05 48.4 5.2 23 370-392 176-198 (436)
445 2npi_A Protein CLP1; CLP1-PCF1 83.9 0.4 1.4E-05 51.8 2.3 24 371-394 140-163 (460)
446 1tf7_A KAIC; homohexamer, hexa 83.7 0.53 1.8E-05 51.7 3.1 33 371-403 41-78 (525)
447 1vma_A Cell division protein F 83.6 0.54 1.8E-05 47.9 3.0 23 371-393 106-128 (306)
448 2yhs_A FTSY, cell division pro 83.5 0.49 1.7E-05 51.4 2.7 23 371-393 295-317 (503)
449 1h65_A Chloroplast outer envel 83.5 0.47 1.6E-05 47.1 2.4 24 369-392 39-62 (270)
450 2yv5_A YJEQ protein; hydrolase 83.3 0.59 2E-05 47.4 3.1 23 371-394 167-189 (302)
451 4b3f_X DNA-binding protein smu 83.1 0.54 1.8E-05 53.0 3.0 18 371-388 207-224 (646)
452 2obl_A ESCN; ATPase, hydrolase 83.0 0.7 2.4E-05 48.0 3.6 25 371-395 73-97 (347)
453 1tq4_A IIGP1, interferon-induc 82.9 0.56 1.9E-05 49.9 2.8 24 371-394 71-94 (413)
454 3cr8_A Sulfate adenylyltranfer 82.9 0.41 1.4E-05 53.0 1.8 24 371-394 371-394 (552)
455 3bh0_A DNAB-like replicative h 82.7 0.62 2.1E-05 47.5 3.0 22 371-392 70-91 (315)
456 3io5_A Recombination and repai 82.7 0.5 1.7E-05 48.4 2.3 33 372-404 31-69 (333)
457 2qag_A Septin-2, protein NEDD5 82.6 0.55 1.9E-05 49.0 2.6 23 370-392 38-60 (361)
458 1c9k_A COBU, adenosylcobinamid 82.5 0.55 1.9E-05 44.0 2.3 21 372-392 2-22 (180)
459 4ag6_A VIRB4 ATPase, type IV s 82.3 0.69 2.4E-05 48.5 3.3 23 370-392 36-58 (392)
460 3thx_A DNA mismatch repair pro 82.0 0.79 2.7E-05 53.9 3.9 21 371-391 664-684 (934)
461 3geh_A MNME, tRNA modification 82.0 1.4 4.6E-05 47.7 5.5 25 368-392 223-247 (462)
462 2e87_A Hypothetical protein PH 82.0 0.59 2E-05 48.5 2.6 23 370-392 168-190 (357)
463 3rc3_A ATP-dependent RNA helic 81.9 1.6 5.4E-05 49.5 6.2 29 371-399 157-185 (677)
464 1jal_A YCHF protein; nucleotid 81.8 0.75 2.6E-05 48.0 3.3 23 370-392 3-25 (363)
465 3l0i_B RAS-related protein RAB 81.8 0.2 6.9E-06 46.9 -1.0 21 370-390 34-54 (199)
466 3def_A T7I23.11 protein; chlor 81.8 0.61 2.1E-05 46.1 2.5 23 370-392 37-59 (262)
467 3t34_A Dynamin-related protein 81.8 0.68 2.3E-05 48.1 3.0 26 371-396 36-63 (360)
468 2aka_B Dynamin-1; fusion prote 81.8 0.57 1.9E-05 46.8 2.3 23 370-392 27-49 (299)
469 2v6i_A RNA helicase; membrane, 81.8 1.5 5.1E-05 46.7 5.7 17 370-386 3-19 (431)
470 4edh_A DTMP kinase, thymidylat 81.7 0.73 2.5E-05 44.3 2.9 25 370-394 7-31 (213)
471 2px0_A Flagellar biosynthesis 81.7 0.6 2E-05 47.3 2.4 24 371-394 107-130 (296)
472 2dpy_A FLII, flagellum-specifi 81.7 0.81 2.8E-05 49.1 3.6 25 371-395 159-183 (438)
473 3cnl_A YLQF, putative uncharac 81.5 0.63 2.2E-05 46.2 2.5 22 371-392 101-122 (262)
474 1tf7_A KAIC; homohexamer, hexa 81.4 0.57 1.9E-05 51.4 2.3 24 371-394 283-306 (525)
475 2dby_A GTP-binding protein; GD 81.3 0.77 2.6E-05 48.1 3.1 23 370-392 2-24 (368)
476 3v9p_A DTMP kinase, thymidylat 81.2 0.62 2.1E-05 45.3 2.3 24 371-394 27-50 (227)
477 1u94_A RECA protein, recombina 81.2 0.77 2.6E-05 47.8 3.1 22 371-392 65-86 (356)
478 2j9r_A Thymidine kinase; TK1, 81.2 2.7 9.3E-05 40.3 6.7 22 434-455 102-123 (214)
479 1puj_A YLQF, conserved hypothe 81.1 0.7 2.4E-05 46.4 2.7 24 369-392 120-143 (282)
480 3fdi_A Uncharacterized protein 81.0 0.93 3.2E-05 43.0 3.4 29 371-399 8-36 (201)
481 1a7j_A Phosphoribulokinase; tr 81.0 0.47 1.6E-05 47.9 1.3 24 371-394 7-30 (290)
482 1udx_A The GTP-binding protein 80.9 0.75 2.6E-05 49.0 3.0 24 371-394 159-182 (416)
483 3h1t_A Type I site-specific re 80.9 2.6 9E-05 46.5 7.6 21 370-390 199-219 (590)
484 1x6v_B Bifunctional 3'-phospho 80.8 0.96 3.3E-05 50.7 3.8 23 371-393 54-76 (630)
485 2vp4_A Deoxynucleoside kinase; 80.6 0.62 2.1E-05 45.0 2.0 22 371-392 22-43 (230)
486 2gk6_A Regulator of nonsense t 80.5 0.77 2.6E-05 51.6 3.0 22 371-392 197-218 (624)
487 3qf4_A ABC transporter, ATP-bi 80.4 1.2 4E-05 49.7 4.5 25 371-395 371-395 (587)
488 4dcu_A GTP-binding protein ENG 80.4 2 6.8E-05 46.1 6.2 23 370-392 196-218 (456)
489 3b60_A Lipid A export ATP-bind 80.2 1.2 4.2E-05 49.4 4.5 24 371-394 371-394 (582)
490 3p32_A Probable GTPase RV1496/ 80.1 0.95 3.3E-05 46.9 3.4 24 370-393 80-103 (355)
491 1g8f_A Sulfate adenylyltransfe 80.1 0.81 2.8E-05 50.0 2.9 25 370-394 396-420 (511)
492 1sky_E F1-ATPase, F1-ATP synth 80.0 0.96 3.3E-05 48.8 3.4 22 371-392 153-174 (473)
493 3gee_A MNME, tRNA modification 80.0 2.2 7.4E-05 46.2 6.2 25 368-392 232-256 (476)
494 2wkq_A NPH1-1, RAS-related C3 79.9 0.81 2.8E-05 46.2 2.7 24 369-392 155-178 (332)
495 1ni3_A YCHF GTPase, YCHF GTP-b 79.8 0.82 2.8E-05 48.3 2.7 23 370-392 21-43 (392)
496 3b5x_A Lipid A export ATP-bind 79.6 1.4 4.9E-05 48.9 4.8 24 371-394 371-394 (582)
497 1t9h_A YLOQ, probable GTPase E 79.6 0.35 1.2E-05 49.3 -0.2 23 371-393 175-197 (307)
498 2iw3_A Elongation factor 3A; a 79.5 1.5 5.1E-05 51.6 5.0 38 345-391 446-483 (986)
499 3euj_A Chromosome partition pr 79.5 0.94 3.2E-05 49.1 3.2 25 371-395 31-55 (483)
500 4a82_A Cystic fibrosis transme 79.5 1.2 4.1E-05 49.5 4.1 24 371-394 369-392 (578)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.4e-82 Score=713.93 Aligned_cols=484 Identities=37% Similarity=0.605 Sum_probs=429.5
Q ss_pred hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213 86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK 165 (621)
Q Consensus 86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~ 165 (621)
.+.+++||++|.+. ++.++|+++|++|+..++.+|+||++||.+|+++||++|+++|.+++++|++|+.++++...
T Consensus 5 ~~~f~~Fl~~~~~~----~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~ 80 (595)
T 3f9v_A 5 RDVFIEFLTTFKGN----NNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 80 (595)
T ss_dssp HHHHHHHHHHCCTT----TTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhcc----CCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhc
Confidence 35678999999753 24788999999999999999999999999999999999999999999999999998764211
Q ss_pred ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213 166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT 245 (621)
Q Consensus 166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~ 245 (621)
+ .+.. ..++++|+|.+++ ...++|+|++.++||||+|+|+|+
T Consensus 81 ---------------------------~--------~~~~-~~~~~~v~~~~~~--~~~~~r~l~~~~i~~lv~v~G~V~ 122 (595)
T 3f9v_A 81 ---------------------------P--------TYQR-DIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILV 122 (595)
T ss_dssp ---------------------------G--------GGTT-TCCCCCCCEECCS--CEECGGGCCGGGTTCCEEEEEEEE
T ss_pred ---------------------------h--------hhhh-ccceEEEEEeCCC--CCCChhhcchhhCCcEEEEEEEEE
Confidence 0 0000 1235778888877 568999999999999999999999
Q ss_pred EecccceeeeEEEEEecC--CCCeeeec---ccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCC
Q psy11213 246 RSTEVKPLMTVATYTCDM--CGAETYQP---ISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQ 320 (621)
Q Consensus 246 r~s~v~p~~~~~~f~C~~--Cg~~~~~~---~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~ 320 (621)
|+|.|+|++.+++|.|.+ ||+.++.+ ..+..+.+|..||+ |++ .|+|.++.+.|.|+|||+|+|||.|+.
T Consensus 123 r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~--C~~---~~~~~~~~~~s~~~d~Q~i~iQe~~~~ 197 (595)
T 3f9v_A 123 KVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPK--CGK---PGQFRLIPEKTKLIDWQKAVIQERPEE 197 (595)
T ss_dssp EECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTT--TCC---CSEEECCSTTCEEEEEEEEEEECCTTT
T ss_pred EecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCC--CCC---CCceEEeccCceeeeeEEEEEEecccc
Confidence 999999999999999999 99987766 34567889999986 874 458999999999999999999999999
Q ss_pred CCCCCcccceeeecccccccccccCceEEEeeeeeccccCC--------ceeeec-------------------------
Q psy11213 321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLRTG--------FRQVTQ------------------------- 367 (621)
Q Consensus 321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~~~--------~~~~~~------------------------- 367 (621)
+|.|++||+++|+|++|||++++|||+|.|+||+.+....+ |.....
T Consensus 198 ~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~ 277 (595)
T 3f9v_A 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIK 277 (595)
T ss_dssp SCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHH
T ss_pred CCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999997554311 110000
Q ss_pred -----------------------------------Cc-------------ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 368 -----------------------------------GN-------------INICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 368 -----------------------------------g~-------------i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
|+ +||||+||||||||+||+++++.+++..++
T Consensus 278 ~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 278 DLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp TTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred HHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 44 399999999999999999999999999999
Q ss_pred cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceE
Q psy11213 400 TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSI 479 (621)
Q Consensus 400 ~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~v 479 (621)
.+.+.+..|++++...+..+|.+..++|++.+|++|||||||||+|+++.+++||++||++++++.++|....++++++|
T Consensus 358 ~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 358 TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred CCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 99888899999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHH
Q psy11213 480 LAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYID 559 (621)
Q Consensus 480 iAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~ 559 (621)
|||+||.+|+|++.+++.+|+.|++||+||||+++++.|.|+.+ +..|++|++..|... ...+.++.+.|++|+.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~----~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK----STKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC----SSSSTTCCTTTHHHHH
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc----ccccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999877542 3456789999999999
Q ss_pred HHHcC-CCCCCHHHHHHHHHHHHHHHHHhhcCC-CCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 560 LCKGK-NPTVPSSLTEHIVKAYTELRKVARNSR-DMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 560 ~ar~~-~p~ls~~a~~~l~~~y~~lR~~~~~~~-~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
||++. .|.+++++.+.|.++|.++|+...... ...++|+|++++++|+|+|+|++++++.|+
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~ 576 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVT 576 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSS
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 99988 999999999999999999998755432 246799999999999999999999999986
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=4.2e-58 Score=491.86 Aligned_cols=295 Identities=26% Similarity=0.367 Sum_probs=251.1
Q ss_pred ccCcccchhhhhhhhcccCCCCCCCcccceeeeccccccc------ccccCceEEEeeeeeccc--cCCcee--------
Q psy11213 301 TRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTR------QVVPGDHVSVSGIFLPLL--RTGFRQ-------- 364 (621)
Q Consensus 301 ~~~s~~~d~Q~i~iQe~~~~~~~g~~p~~i~v~l~~~lv~------~~~~G~~v~v~Gil~~~~--~~~~~~-------- 364 (621)
.+++.|.|||+|||||.|+++|.|++||+++|+|++|||+ +|+|||+|.|+||+.+.. .++...
T Consensus 108 ~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~~l~a~~i~~~~~~~~~~ 187 (506)
T 3f8t_A 108 VERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVH 187 (506)
T ss_dssp CSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETTEEEEEEEEEECSSCCCC
T ss_pred HhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEeEEEEEEEEEcCccccCC
Confidence 4567789999999999999999999999999999999999 999999999999987531 000000
Q ss_pred ee-------------c---------------------------Cc-------ccEEEeCCCCcchhHHHHHH-Hhhcccc
Q psy11213 365 VT-------------Q---------------------------GN-------INICLMGDPGVAKSQLLSYI-ERLARRS 396 (621)
Q Consensus 365 ~~-------------~---------------------------g~-------i~vLL~G~PGtGKS~ll~~i-a~~~pr~ 396 (621)
+. . |+ +||||+|+||| ||+|++++ ++++||.
T Consensus 188 ~t~ed~~~i~~l~~~~~~~~l~~sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~ 266 (506)
T 3f8t_A 188 PDPAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRG 266 (506)
T ss_dssp CCHHHHHHHHHHHHSCHHHHHHHHHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCe
Confidence 00 0 44 49999999999 99999999 9999999
Q ss_pred EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCc
Q psy11213 397 QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNAR 476 (621)
Q Consensus 397 ~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar 476 (621)
+|++|.+++.+||+++ .+++ +| |.+++|++++||+|+||||||++|+++.+.+|||+||+|++++. |+ ++|++
T Consensus 267 ~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lpar 339 (506)
T 3f8t_A 267 VYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNAR 339 (506)
T ss_dssp EEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECC
T ss_pred EEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCC
Confidence 9999999988999999 7887 88 99999999999999999999999999999999999999999996 77 99999
Q ss_pred ceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHH
Q psy11213 477 VSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRR 556 (621)
Q Consensus 477 ~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~ 556 (621)
|+||||+||.+ +||++++. +|++||+++||||||++++.|+|+.+.|.+ ...+.++.+.|++
T Consensus 340 f~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e----------------~~~~~ls~e~L~~ 401 (506)
T 3f8t_A 340 CAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE----------------QDTEVPSYTLLRR 401 (506)
T ss_dssp CEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC------------------------------CCHHHHHH
T ss_pred eEEEEEeCccc-ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc----------------ccCCCCCHHHHHH
Confidence 99999999998 99999988 999999999999999999999999998842 1235789999999
Q ss_pred HHHHHH-cC-CCCCCHHHHHHHHHHHHHHHHHhhc----CCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 557 YIDLCK-GK-NPTVPSSLTEHIVKAYTELRKVARN----SRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 557 ~i~~ar-~~-~p~ls~~a~~~l~~~y~~lR~~~~~----~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
|+.||| +. +|.+++++.++|.++|..+|+.... .....++|+|++++|+|+|+|+|+|++|+.|+
T Consensus 402 yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 402 YLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp HHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 999999 55 9999999999999999999984221 11356799999999999999999999999985
No 3
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-43 Score=360.88 Aligned_cols=227 Identities=26% Similarity=0.452 Sum_probs=200.3
Q ss_pred hhhHHHHHHhcccccccCcchhchHHHHHHHHHcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCCc
Q psy11213 86 IDLDDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDYK 165 (621)
Q Consensus 86 i~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~~ 165 (621)
.+.+.+||++|.+. .+.++|+++|++|++.++.+|+||++||.+|+++||++|+++|.+++++|++|+.++++...
T Consensus 11 ~~~f~~Fl~~f~~~----~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~ 86 (268)
T 2vl6_A 11 RDVFIEFLTTFKGN----NNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 86 (268)
T ss_dssp HHHHHHHHHHCCCS----SSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcc----cCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 35678999999742 24678999999999999999999999999999999999999999999999999999875431
Q ss_pred ccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEEE
Q psy11213 166 SHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVT 245 (621)
Q Consensus 166 ~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV~ 245 (621)
.. +. ...++++|+|.+++ ...++|+|+++|+||||+|+|+|+
T Consensus 87 ~~-----------------------------------~~-~~~~~~~vr~~~~~--~~~~iR~l~~~~igkLV~v~GiV~ 128 (268)
T 2vl6_A 87 PT-----------------------------------YQ-RDIEKVHVRIVGIP--RVIELRKIRSTDIGKLITIDGILV 128 (268)
T ss_dssp GG-----------------------------------GT-TTCSCCCEEEECCS--CEECGGGCCGGGTTSEEEEEEEEE
T ss_pred ch-----------------------------------hh-ccCccEEEEEECCC--CCCccccCChhHCCCeEEEEEEEE
Confidence 10 00 01246789999887 568999999999999999999999
Q ss_pred EecccceeeeEEEEEe--cCCCCeeeec---ccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCC
Q psy11213 246 RSTEVKPLMTVATYTC--DMCGAETYQP---ISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQ 320 (621)
Q Consensus 246 r~s~v~p~~~~~~f~C--~~Cg~~~~~~---~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~ 320 (621)
|+|.|+|++.+++|.| .+||+.+.+. +..+.+++|..||. |++ .|+|.++++.|+|+|||+|||||+|+.
T Consensus 129 r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~--C~~---~~~~~l~~~~s~f~D~Q~ikiQE~pe~ 203 (268)
T 2vl6_A 129 KVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPK--CGK---PGQFRLIPEKTKLIDWQKAVIQERPEE 203 (268)
T ss_dssp EECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTT--TCC---BCEEEECGGGCEEEEEEEEEEECCGGG
T ss_pred EcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCC--CCC---CCCEEEecCccEEEeeEEEEEEeCCCC
Confidence 9999999999999999 9999988777 56678899999995 984 468999999999999999999999999
Q ss_pred CCCCCcccceeeecccccccccccCceEEEeeeeecccc
Q psy11213 321 VPVGNIPRGITVLCRGENTRQVVPGDHVSVSGIFLPLLR 359 (621)
Q Consensus 321 ~~~g~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~~~ 359 (621)
+|+|++||+++|+|++||||+++|||+|.|+||+.+...
T Consensus 204 vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~ 242 (268)
T 2vl6_A 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQD 242 (268)
T ss_dssp SCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred CCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence 999999999999999999999999999999999986543
No 4
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=1.6e-42 Score=355.96 Aligned_cols=210 Identities=25% Similarity=0.413 Sum_probs=189.3
Q ss_pred hhHHHHHHhcccccccCcchhchHHHHHHHH--HcCCcEEEEechhhhcccHHHHHHHHHcHHHHHHHHHHHHHHhcCCC
Q psy11213 87 DLDDEFLIEFVKIDKDDNKIFKYSKQLSKLA--HREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFELLPDY 164 (621)
Q Consensus 87 ~~~~~Fl~~F~~~~~~~~~~~~Y~~~i~~~~--~~~~~~l~Vd~~dL~~fd~~La~~i~~np~~~l~l~~~av~el~~~~ 164 (621)
+.+.+||++| +|+++|++|+ ..++++|+||++||.+|+++||++|.++|.+++++|++|++++.| +
T Consensus 16 ~~f~~Fl~~~-----------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~-~ 83 (279)
T 1ltl_A 16 TKFEEFFSLQ-----------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDR-L 83 (279)
T ss_dssp HHHHHHTTSH-----------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCT-T
T ss_pred HHHHHHhccc-----------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhcc-c
Confidence 5566776655 5999999999 778999999999999999999999999999999999999987643 1
Q ss_pred cccccccCChhhHHHHHHHHHhhhCCCCcccccccccCCcccccceeEEEEeCCCCCCCcccccccccCCCcEEEEEEEE
Q psy11213 165 KSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVV 244 (621)
Q Consensus 165 ~~~~~~~~d~ld~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~l~~~~~v~~~~~~~~~~~~ir~l~s~~igkLV~i~GiV 244 (621)
. ..+ +++|+|.+++ ...++|+|+++|+||||+|+|+|
T Consensus 84 ~---------------------------------------~~~--~~~vr~~~~~--~~~~iR~L~~~~igkLV~v~GiV 120 (279)
T 1ltl_A 84 R---------------------------------------KNV--DLNIRFSGIS--NVIPLRELRSKFIGKFVAVDGIV 120 (279)
T ss_dssp C---------------------------------------CCC--CCEEEEECCS--CBCCGGGCCGGGTTSEEEEEEEE
T ss_pred c---------------------------------------CCe--eEEEEEECCC--CCCCcccCChhhCCCEEEEEEEE
Confidence 1 011 4789998887 56899999999999999999999
Q ss_pred EEecccceeeeEEEEEecCCCCeeeecccccccCCCCCCCCccccCCCCCCceeeeccCcccchhhhhhhhcccCCCCCC
Q psy11213 245 TRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVG 324 (621)
Q Consensus 245 ~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g 324 (621)
+|+|.|+|++.+++|.|.+||+.+++++..+.+++|..||+ |++ .| |.++.+.|+|+|||+|||||+|+.+|.|
T Consensus 121 ~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~--C~~---~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G 194 (279)
T 1ltl_A 121 RKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSE--CGG---RS-FRLLQDESEFLDTQTLKLQEPLENLSGG 194 (279)
T ss_dssp EEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTT--TCC---CC-EEECGGGCEEEEEEEEEEECCSTTCCSS
T ss_pred EEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCC--CCC---CC-cEEeccccEEEeeEEEEEecCcccCCCC
Confidence 99999999999999999999999888887778999999996 984 34 9999999999999999999999999999
Q ss_pred CcccceeeecccccccccccCceEEEeeeeecc
Q psy11213 325 NIPRGITVLCRGENTRQVVPGDHVSVSGIFLPL 357 (621)
Q Consensus 325 ~~p~~i~v~l~~~lv~~~~~G~~v~v~Gil~~~ 357 (621)
++||+++|+|++||||+++|||+|.|+||+.+.
T Consensus 195 ~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~ 227 (279)
T 1ltl_A 195 EQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTV 227 (279)
T ss_dssp CCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEE
T ss_pred CCCeEEEEEEcccccCccCCCCEEEEEEEEEEe
Confidence 999999999999999999999999999999754
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.90 E-value=9.8e-23 Score=213.94 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=178.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec--CCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT--GRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~--g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
|+||+||||||||+|++++++.++...+.. ........+++....+...|.+.+.+|.+. +||+||||+++++++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~---~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVF---SNFILADEVNRSPAK 124 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTC---SSEEEEETGGGSCHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCccc---ccEEEEEccccCCHH
Confidence 999999999999999999999887654332 222222346666555555677778888774 799999999999999
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHH
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL 528 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i 528 (621)
.++.|+++|+++.+++ .|....++.++.++||+||.. ..+...++++|+|||++ .+..+.|+.+...+|
T Consensus 125 ~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~--------~~~~~~l~~~l~~Rf~~-~i~i~~p~~~~~~~i 193 (331)
T 2r44_A 125 VQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVE--------QEGTYPLPEAQVDRFMM-KIHLTYLDKESELEV 193 (331)
T ss_dssp HHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTC--------CSCCCCCCHHHHTTSSE-EEECCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCc--------ccCcccCCHHHHhheeE-EEEcCCCCHHHHHHH
Confidence 9999999999999988 688889999999999999974 12234699999999974 456678899888888
Q ss_pred HHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCCccCHHHHH
Q psy11213 529 AQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSR------DMSYTSARNLL 602 (621)
Q Consensus 529 a~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~------~~~~~t~R~le 602 (621)
.++...... .......++.+.+......++ +..+++++.+++.+.+..+|....... ....+|+|.++
T Consensus 194 l~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~--~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~ 267 (331)
T 2r44_A 194 MRRVSNMNF----NYQVQKIVSKNDVLEIRNEIN--KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAI 267 (331)
T ss_dssp HHHHHCTTC----CCCCCCCSCHHHHHHHHHHHH--TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHH
T ss_pred HHhccccCc----chhccccCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHH
Confidence 887764321 112245677777777766554 478999999999999988886532100 12346899999
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q psy11213 603 AILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 603 slirla~A~Akl~lr~~V~ 621 (621)
+++++|+|+|.+++++.|+
T Consensus 268 ~ll~~a~a~A~l~g~~~v~ 286 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVL 286 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCC
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999875
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.87 E-value=1e-21 Score=216.58 Aligned_cols=247 Identities=19% Similarity=0.194 Sum_probs=168.9
Q ss_pred ccccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcccc---EEecCCCCccccceEEEeecC
Q psy11213 341 QVVPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRS---QYTTGRGSSGVGLTAAVMKDP 417 (621)
Q Consensus 341 ~~~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~~g~~~s~~gLta~~~~~~ 417 (621)
....|++-.+..++.++..++ |+||+||||||||+|++++++.+++. .+......+...+++......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~ 92 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQA 92 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC---
T ss_pred hhhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHH
Confidence 344566655555555555555 99999999999999999999988652 122222212223443211110
Q ss_pred --ccccee-eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCC
Q psy11213 418 --ITNEMV-LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKR 494 (621)
Q Consensus 418 --~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~ 494 (621)
..|.+. ...|.+ +..+|+|||||++++++.++.|+++|+++.+++ .|....++.++ +|+|+|+...
T Consensus 93 ~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe------ 161 (500)
T 3nbx_X 93 LKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE------ 161 (500)
T ss_dssp -------CBCCTTSG--GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC------
T ss_pred HhhchhHHhhhccCC--CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC------
Confidence 123332 333432 346799999999999999999999999999988 68889999986 5667786421
Q ss_pred CcccccCCCHhHhccccEEEEecCCCCh-HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHH
Q psy11213 495 SIEQNIQLPAALLSRFDLLWLIQDKPDR-DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLT 573 (621)
Q Consensus 495 ~~~~~~~L~~aLlsRFDli~~~~d~~d~-~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~ 573 (621)
...+.+++++|| .+.+..++|+. +....|.+.... ....+....+.++.+.+.++...++. +.+++++.
T Consensus 162 ----~~~~~~aLldRF-~~~i~v~~p~~~ee~~~IL~~~~~---~~~~~~~~~~~~~~e~l~~~~~~~~~--v~v~d~v~ 231 (500)
T 3nbx_X 162 ----ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQD---ENDNPVPDALQVTDEEYERWQKEIGE--ITLPDHVF 231 (500)
T ss_dssp ----TTCTTHHHHTTC-CEEEECCSCCCHHHHHHHHTCCCC---TTSCCSCTTTSBCHHHHHHHHHHHTT--CBCCHHHH
T ss_pred ----ccccHHHHHHHH-HHHHHHHHhhhhhhHHHHHhcccc---cCCCCCCccceecHHHHHHHHhcCCc--ccCchHHH
Confidence 123568999999 46666788877 444555542211 11112223567899999999888765 78899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+++.+.+..+|... ....+|+|++++++++|+|+|.+++|+.|+
T Consensus 232 e~i~~l~~~lr~~r----~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt 275 (500)
T 3nbx_X 232 ELIFMLRQQLDKLP----DAPYVSDRRWKKAIRLLQASAFFSGRSAVA 275 (500)
T ss_dssp HHHHHHHHHHHHCS----SSCCCCHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred HHHHHHHHHhhcCC----CCCccchhHHHHHHHHHHHHHhhcCCcccc
Confidence 99988877776542 234579999999999999999999999885
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.86 E-value=9.3e-22 Score=207.34 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=167.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC---------------------------------CCccccceEEEeecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---------------------------------GSSGVGLTAAVMKDP 417 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---------------------------------~~s~~gLta~~~~~~ 417 (621)
|+||+||||||||++++++++.+++..+..+. +.+..++.+......
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 126 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIER 126 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHH
T ss_pred eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhh
Confidence 89999999999999999999998864433221 111111222111110
Q ss_pred --cccceeeeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCC
Q psy11213 418 --ITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRS 495 (621)
Q Consensus 418 --~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~ 495 (621)
..+.+.+.+|.+..|++|++||||+++++++.+..|+++|+++...+...|.....+.++.+|||+||..+
T Consensus 127 ~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~------- 199 (350)
T 1g8p_A 127 AISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG------- 199 (350)
T ss_dssp HHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-------
T ss_pred hhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-------
Confidence 12345677888889999999999999999999999999999999999889999999999999999999643
Q ss_pred cccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHH
Q psy11213 496 IEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLT 573 (621)
Q Consensus 496 ~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~ 573 (621)
.++++|++||++.+.+...++.+.+..|.++.+....... ........+...+++++.+++.. ...+++++.
T Consensus 200 -----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~ 273 (350)
T 1g8p_A 200 -----DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK-AFLEEWRPKDMDIRNQILEARERLPKVEAPNTAL 273 (350)
T ss_dssp -----CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHH
T ss_pred -----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch-hhccccccchHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4889999999976666665577777788887654321000 00000112345677888777654 568999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
++|.+++...+. -++|.++++++.|.++|.+++++.|+
T Consensus 274 ~~l~~~~~~~~~----------~~~R~~~~ll~~a~~~A~~~~~~~v~ 311 (350)
T 1g8p_A 274 YDCAALCIALGS----------DGLRGELTLLRSARALAALEGATAVG 311 (350)
T ss_dssp HHHHHHHHHSSS----------CSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred HHHHHHHHHhCC----------CCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 999987543210 16899999999999999999998775
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.70 E-value=2.2e-17 Score=187.12 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=112.7
Q ss_pred eeccceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCe----------EEecCCcceEEeecCCCCCCCCCC
Q psy11213 424 LEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI----------MTRLNARVSILAAANPAYGRYNPK 493 (621)
Q Consensus 424 l~~GalvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi----------~~~l~ar~~viAa~Np~~g~~~~~ 493 (621)
+.+|.+..|++|++||||++++++..+..|+++|+++.+.+. |. ...+|.++.||+|+|+...
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~----- 264 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV----- 264 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH-----
T ss_pred ccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH-----
Confidence 588999999999999999999999999999999999998874 33 4456788999999998511
Q ss_pred CCcccccCCCHhHhccccE--EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHH----HHc--CC
Q psy11213 494 RSIEQNIQLPAALLSRFDL--LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDL----CKG--KN 565 (621)
Q Consensus 494 ~~~~~~~~L~~aLlsRFDl--i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~----ar~--~~ 565 (621)
..++++|++||++ +.+-.+...+ ...+.++.|+.+ ++. ..
T Consensus 265 ------~~l~~~l~~R~~v~~i~i~l~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~~ 312 (604)
T 3k1j_A 265 ------DKMHPALRSRIRGYGYEVYMRTTMP--------------------------DTIENRRKLVQFVAQEVKRDGKI 312 (604)
T ss_dssp ------HHSCHHHHHHHHHHSEEEECCSEEE--------------------------CCHHHHHHHHHHHHHHHHHHCSS
T ss_pred ------hhcCHHHHHHhhccceEeecccccc--------------------------CCHHHHHHHHHHHHHHHhhccCc
Confidence 1489999999973 2222221111 112223333322 221 24
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 566 PTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 566 p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
+.+++++.+.|.++|..+ . ......++++|++++++|.|.++|++++++.|+
T Consensus 313 ~~ls~eAl~~Li~~~~r~--~--g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~ 364 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKR--A--GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVE 364 (604)
T ss_dssp CCBBHHHHHHHHHHHHHT--T--CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred ccCCHHHHHHHHHHHhhh--h--ccccccccCHHHHHHHHHHHHHHHHhcCccccc
Confidence 789999999999987532 1 111234468999999999999999999988775
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.58 E-value=4.2e-15 Score=154.25 Aligned_cols=201 Identities=14% Similarity=0.179 Sum_probs=127.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+|||+|+||||||++++++++.+++. ...++..+.. ..|.+. .+...+|......|.+..|++|++|||
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~-~~g~~tg~~~~~~g~~~~a~~g~L~LD 103 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLD 103 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC-CSSCCC---CCCCCHHHHHTTSEEEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc-cccccCchhhhhcCHHHhcCCCEEEEe
Confidence 4599999999999999999999987643 1222222110 011111 111123444456788888999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.++.+.+..|+.+|+++.+. +.|.....+.++.||+|+|+... .....-.+.+.|++||+.+.+..+..
T Consensus 104 Ei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~------~~v~~g~fr~~L~~Rl~~~~i~lPpL 175 (304)
T 1ojl_A 104 EIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLA------EEVSAGRFRQDLYYRLNVVAIEMPSL 175 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHH------HHHHHTSSCHHHHHHHSSEEEECCCS
T ss_pred ccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHH------HHHHhCCcHHHHHhhcCeeEEeccCH
Confidence 99999999999999999998763 46777777888999999998510 01122257899999997555555444
Q ss_pred C--hHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213 521 D--RDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA 598 (621)
Q Consensus 521 d--~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~ 598 (621)
. .+.-..++++.+.. +........+.+++++.+.|..+ .++-++
T Consensus 176 ~eR~edi~~l~~~~l~~---------------------~~~~~~~~~~~~s~~a~~~L~~~-------------~wpGnv 221 (304)
T 1ojl_A 176 RQRREDIPLLADHFLRR---------------------FAERNRKVVKGFTPQAMDLLIHY-------------DWPGNI 221 (304)
T ss_dssp GGGGGGHHHHHHHHHHH---------------------HHHHTTCCCCCBCHHHHHHHHHC-------------CCSSHH
T ss_pred HHhHhhHHHHHHHHHHH---------------------HHHHhccCccCCCHHHHHHHHcC-------------CCCCCH
Confidence 3 23333455554321 11111111356788877777653 234467
Q ss_pred HHHHHHHHHHHHHH
Q psy11213 599 RNLLAILRLSTALA 612 (621)
Q Consensus 599 R~leslirla~A~A 612 (621)
|+|+++++-+.+.|
T Consensus 222 ReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 222 RELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88887777665544
No 10
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=1.1e-14 Score=147.57 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=122.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc----EEe-cCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS----QYT-TGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~-~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDE 441 (621)
.++||+|+||||||++++++++.+++. ++. ++..... ..+.+. .....+|......|.+..|++|++||||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDE 108 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCC-C---------CCCCHHHHTTTSEEEEES
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCC-cccccccccccccchhhhcCCcEEEEec
Confidence 499999999999999999999987642 122 1111110 001110 0011122223356777778999999999
Q ss_pred CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
++.++.+.+..|+.+|+++.+ .+.|.....+.++.+|+|+|+... .....-.+.++|++||+.+.+..+...
T Consensus 109 i~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~------~~~~~~~~~~~L~~Rl~~~~i~lp~L~ 180 (265)
T 2bjv_A 109 LATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLP------AMVNEGTFRADLLDALAFDVVQLPPLR 180 (265)
T ss_dssp GGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHH------HHHHHTSSCHHHHHHHCSEEEECCCGG
T ss_pred hHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHH------HHHHcCCccHHHHHhhcCcEEeCCChh
Confidence 999999999999999999875 345666666778999999998511 011122578999999975444444333
Q ss_pred h--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-C---CCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213 522 R--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-N---PTVPSSLTEHIVKAYTELRKVARNSRDMSY 595 (621)
Q Consensus 522 ~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~---p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~ 595 (621)
. +.-..++++.+. ++ +++. . +.+++++.+.|..+ .++
T Consensus 181 ~R~~di~~l~~~~l~---------------------~~---~~~~~~~~~~~~~~~a~~~L~~~-------------~~~ 223 (265)
T 2bjv_A 181 ERESDIMLMAEYFAI---------------------QM---CREIKLPLFPGFTERARETLLNY-------------RWP 223 (265)
T ss_dssp GCHHHHHHHHHHHHH---------------------HH---HHHTTCSSCCCBCHHHHHHHHHS-------------CCT
T ss_pred hhhHHHHHHHHHHHH---------------------HH---HHHhCCCcccCcCHHHHHHHHhC-------------CCC
Confidence 2 222234444322 21 2222 1 47899888877643 234
Q ss_pred cCHHHHHHHHHHHHHHH
Q psy11213 596 TSARNLLAILRLSTALA 612 (621)
Q Consensus 596 ~t~R~leslirla~A~A 612 (621)
-++|+|.++++.+-+.|
T Consensus 224 gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 224 GNIRELKNVVERSVYRH 240 (265)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 56899999988776655
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.51 E-value=3.4e-14 Score=146.49 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=128.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccceeec-CCCeeEecCCCCCCh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA-DQGICCIDEFDKLPD 447 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA-d~gi~~IDEidk~~~ 447 (621)
.++||+||||||||++++++++.+....+.. .......|..+.........-+...+|.+..+ .++|++|||++++.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 4899999999999999999999876544321 11111111111000000000001113344443 479999999999987
Q ss_pred hh------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 448 AD------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 448 ~~------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
+. ++.|+.+||.+.+... .| ..-+.++.+|+|+|+... ....++++|++||+ ..+
T Consensus 131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~-~~--~~~~~~~~~i~~~~~~~~---------~~~~l~~~l~~R~~-~~i 197 (310)
T 1ofh_A 131 KGEYSGADVSREGVQRDLLPLVEGSTVSTK-HG--MVKTDHILFIASGAFQVA---------RPSDLIPELQGRLP-IRV 197 (310)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHCCEEEET-TE--EEECTTCEEEEEECCSSS---------CGGGSCHHHHHTCC-EEE
T ss_pred cccccccchhHHHHHHHHHHHhcCCeEecc-cc--cccCCcEEEEEcCCcccC---------CcccCCHHHHhhCC-ceE
Confidence 76 8899999998876652 33 223456889999875311 11268899999999 445
Q ss_pred ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11213 516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDM 593 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~ 593 (621)
..+.++.++...++++.+. ..++++...++.. .+.+++++.++|.++....+....
T Consensus 198 ~~~~~~~~~~~~il~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~----- 255 (310)
T 1ofh_A 198 ELTALSAADFERILTEPHA-----------------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE----- 255 (310)
T ss_dssp ECCCCCHHHHHHHHHSSTT-----------------CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC-----
T ss_pred EcCCcCHHHHHHHHHhhHH-----------------HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc-----
Confidence 6677777766666653210 2344555544433 457899999999987654433211
Q ss_pred CccCHHHHHHHHHHHHHHHHh
Q psy11213 594 SYTSARNLLAILRLSTALARL 614 (621)
Q Consensus 594 ~~~t~R~leslirla~A~Akl 614 (621)
..++|++..+++-+-+.+.+
T Consensus 256 -~g~~R~l~~~l~~~~~~~~~ 275 (310)
T 1ofh_A 256 -NIGARRLHTVMERLMDKISF 275 (310)
T ss_dssp -CCTTHHHHHHHHHHSHHHHH
T ss_pred -ccCcHHHHHHHHHHHHhhhc
Confidence 13689998888876655443
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.49 E-value=1e-13 Score=145.35 Aligned_cols=135 Identities=20% Similarity=0.206 Sum_probs=91.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
.|+||+|+||||||++++++++.+....+.... .... .+.+ ....--.+++|++||||++.++++
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK------------SGDL--AAILTNLSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS------------HHHH--HHHHHTCCTTCEEEEETGGGCCHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc------------hhHH--HHHHHhccCCCEEEEechhhcCHH
Confidence 389999999999999999999987554332111 1000 1111 001111467899999999999999
Q ss_pred hhhhhHhhhcceEEEEecC------CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCCh
Q psy11213 449 DRTAIHEVMEQQTISIAKA------GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDR 522 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~------gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~ 522 (621)
.+..|+.+|+++.+.+..+ .+...+| ++.+|+|+|... .++++|++|||.. +..+.++.
T Consensus 122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-------------~l~~~L~~R~~~~-i~l~~~~~ 186 (338)
T 3pfi_A 122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-------------MLSNPLRDRFGMQ-FRLEFYKD 186 (338)
T ss_dssp HHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG-------------GSCHHHHTTCSEE-EECCCCCH
T ss_pred HHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc-------------ccCHHHHhhcCEE-eeCCCcCH
Confidence 9999999999887654211 1222334 589999999852 4889999999855 45566676
Q ss_pred HHHHHHHHHHH
Q psy11213 523 DNDLKLAQHIT 533 (621)
Q Consensus 523 ~~d~~ia~~il 533 (621)
++...+.++..
T Consensus 187 ~e~~~il~~~~ 197 (338)
T 3pfi_A 187 SELALILQKAA 197 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 13
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.49 E-value=5.7e-14 Score=149.87 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=114.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCC-CCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCCh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGR-GSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPD 447 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~-~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~ 447 (621)
..|+||+||||||||++++++++.+....+.... ..+..|+.+........+.+....|.+..+.+||+||||++++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 3599999999999999999999998654433211 111122222111110111112233555667899999999999998
Q ss_pred h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC--------------CCCCC-------C
Q psy11213 448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA--------------YGRYN-------P 492 (621)
Q Consensus 448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~--------------~g~~~-------~ 492 (621)
. .++.|+.+||.+.+.+...|.....+.++.+++|+|.. ..|+. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~ 231 (376)
T 1um8_A 152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ 231 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCc
Confidence 8 89999999999888776666666555555555555541 11111 0
Q ss_pred CCC-------cc--------cccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHH
Q psy11213 493 KRS-------IE--------QNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRY 557 (621)
Q Consensus 493 ~~~-------~~--------~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~ 557 (621)
... .. ....+.++|++|||.+ +.....+.+.-..++.+.++ ..+++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~-i~~~~l~~~~l~~i~~~~~~-----------------~~~~~~ 293 (376)
T 1um8_A 232 EKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVL-STLDSISLEAMVDILQKPKN-----------------ALIKQY 293 (376)
T ss_dssp SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSSTT-----------------CHHHHH
T ss_pred hhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCce-eeccCCCHHHHHHHHhhhHH-----------------HHHHHH
Confidence 000 00 0335889999999966 55556666655555542110 123334
Q ss_pred HHHHHc--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHH
Q psy11213 558 IDLCKG--KNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALAR 613 (621)
Q Consensus 558 i~~ar~--~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Ak 613 (621)
....+. ....+++++.++|.++... ....+|.|.+++.-+-..+-
T Consensus 294 ~~~~~~~~~~~~~~~~a~~~l~~~~~~-----------~~~~~R~L~~~le~~~~~~~ 340 (376)
T 1um8_A 294 QQLFKMDEVDLIFEEEAIKEIAQLALE-----------RKTGARGLRAIIEDFCLDIM 340 (376)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHHH-----------TTCTGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcCceEEECHHHHHHHHHHhcc-----------cccCcHHHHHHHHHHHHHHH
Confidence 333321 2456888998888875221 01246777777765554433
No 14
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.48 E-value=1.2e-13 Score=142.90 Aligned_cols=201 Identities=10% Similarity=0.076 Sum_probs=121.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---EEe--cCCCCcc---ccceEEEeecCcccc--eeeeccceeecCCCeeEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---QYT--TGRGSSG---VGLTAAVMKDPITNE--MVLEGGALVLADQGICCID 440 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~~~--~g~~~s~---~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~ID 440 (621)
++||+||||||||++++++++.+.+. ++. +...... ..+.+... ...|. ...-.+++..+.+|+++||
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~lD 126 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPP--GYVGYEEGGQLTEAVRRRPYSVILFD 126 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCT--TSTTTTTCCHHHHHHHHCSSEEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCC--ccccccccchHHHHHHhCCCeEEEEe
Confidence 89999999999999999999986432 211 1111100 00111000 00010 0011123334567999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC-------CCCCCCCCCcccc------cCCCHhHh
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA-------YGRYNPKRSIEQN------IQLPAALL 507 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~-------~g~~~~~~~~~~~------~~L~~aLl 507 (621)
|+++++++.++.|+.+|+++.+... .|....+. ++.+|+|+|+. .+.......+.+. -.++++|+
T Consensus 127 Ei~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 204 (311)
T 4fcw_A 127 AIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL 204 (311)
T ss_dssp TGGGSCHHHHHHHHHHHHHSEEECT-TSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHH
T ss_pred ChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999988753 34333332 46699999983 1111122222222 25899999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK--GKNPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar--~~~p~ls~~a~~~l~~~y~~lR~ 585 (621)
+|||.++.. .+++.+....|+++.+.. +..... ...+.+++++.+.|.++-
T Consensus 205 ~R~~~~~~~-~p~~~~~~~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~----- 257 (311)
T 4fcw_A 205 NRLDEIVVF-RPLTKEQIRQIVEIQMSY---------------------LRARLAEKRISLELTEAAKDFLAERG----- 257 (311)
T ss_dssp TTCSEEEEC-CCCCHHHHHHHHHHHTHH---------------------HHHHHHTTTCEEEECHHHHHHHHHHS-----
T ss_pred hcCCeEEEe-CCCCHHHHHHHHHHHHHH---------------------HHHHHHhCCcEEEeCHHHHHHHHHhC-----
Confidence 999966655 557788778888776532 111111 124678888888877630
Q ss_pred HhhcCCCCCccCHHHHHHHHHHH
Q psy11213 586 VARNSRDMSYTSARNLLAILRLS 608 (621)
Q Consensus 586 ~~~~~~~~~~~t~R~leslirla 608 (621)
. ..+.++|+|..+++-+
T Consensus 258 --~----~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 258 --Y----DPVFGARPLRRVIQRE 274 (311)
T ss_dssp --C----BTTTBTTTHHHHHHHH
T ss_pred --C----CccCCchhHHHHHHHH
Confidence 0 1134678777777643
No 15
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.47 E-value=9.1e-15 Score=155.33 Aligned_cols=218 Identities=16% Similarity=0.198 Sum_probs=119.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCC-CccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRG-SSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~-~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
.|+||+||||||||++++++++.+....+..... ....++.+.......++.+...+|.+..+.+||+||||+|++...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 4999999999999999999999976554432211 011111111000000111112234445567899999999999877
Q ss_pred --------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC---CCCCC-------------------C
Q psy11213 449 --------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA---YGRYN-------------------P 492 (621)
Q Consensus 449 --------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~---~g~~~-------------------~ 492 (621)
.++.|+.+|+...+.+...|....-..++.+|+|+|.. .|.|+ .
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~ 211 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGA 211 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------
T ss_pred ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccc
Confidence 89999999996555554333333333345566666651 11111 0
Q ss_pred CC----------Ccccc--------cCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHH
Q psy11213 493 KR----------SIEQN--------IQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLV 554 (621)
Q Consensus 493 ~~----------~~~~~--------~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~l 554 (621)
.. .+.+. ..+.++|++|||.+ +....++.+.-..|+...++ ..+
T Consensus 212 ~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~-~~~~pl~~~~~~~I~~~~~~-----------------~l~ 273 (363)
T 3hws_A 212 TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV-ATLNELSEEALIQILKEPKN-----------------ALT 273 (363)
T ss_dssp ------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEE-EECCCCCHHHHHHHHHSSTT-----------------CHH
T ss_pred cccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCee-eecCCCCHHHHHHHHHHHHH-----------------HHH
Confidence 00 00011 12899999999955 44567777777777664110 134
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHHHHHHHhcC
Q psy11213 555 RRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRL 616 (621)
Q Consensus 555 r~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~leslirla~A~Akl~l 616 (621)
+++....+.. ...+++++.++|.+.-.. .+...|.|++++.-+-..+-.++
T Consensus 274 ~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~-----------~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 274 KQYQALFNLEGVDLEFRDEALDAIAKKAMA-----------RKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----------TTCTTTTHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHhhcC-----------CccCchHHHHHHHHHHHHHHHhc
Confidence 4454443332 456899999988864111 22457888888876555544443
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.40 E-value=9e-13 Score=147.33 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=85.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC--CccccceEEEeecCcccceeeeccc----eee--cCCCeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG--SSGVGLTAAVMKDPITNEMVLEGGA----LVL--ADQGICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~--~s~~gLta~~~~~~~~g~~~l~~Ga----lvl--Ad~gi~~IDEi 442 (621)
++||+||||||||+|+++++..+++.......+ .....+.+... ...|. .+|. +.. ..++|++|||+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~--~~ig~---~~~~~~~~~~~a~~~~~vl~lDEi 184 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR--TYVGA---MPGRIIQGMKKAGKLNPVFLLDEI 184 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------------CHHHHHHTTCSSSEEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHH--HHhcc---CchHHHHHHHHhhccCCEEEEhhh
Confidence 899999999999999999999976544322111 11111111100 00010 1111 112 26789999999
Q ss_pred CCCChhh----hhhhHhhhcceEE-EEecCCeEEecC-CcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 443 DKLPDAD----RTAIHEVMEQQTI-SIAKAGIMTRLN-ARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 443 dk~~~~~----~~~L~eame~q~i-si~k~gi~~~l~-ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
+++..+. ++.|+++|+.... .+...+.....+ .++.+|+|+|+.. .|+++|++||+ ++.
T Consensus 185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------~l~~aL~~R~~--vi~ 249 (543)
T 3m6a_A 185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-------------TIPGPLRDRME--IIN 249 (543)
T ss_dssp SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-------------TSCHHHHHHEE--EEE
T ss_pred hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-------------cCCHHHHhhcc--eee
Confidence 9999874 4899999975321 111122222222 5689999999973 68999999996 356
Q ss_pred cCCCChHHHHHHHHHHH
Q psy11213 517 QDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il 533 (621)
.+.|+.+++..|+++.+
T Consensus 250 ~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCCCCHHHHHHHHHHTH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 78888888888877543
No 17
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.39 E-value=1.1e-12 Score=152.49 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=117.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC--CCC---ccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG--RGS---SGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFD 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g--~~~---s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEid 443 (621)
|+||+||||||||++++++++.++...+... ... +...+.++.. ...|. ...-.+++..+++||++|||++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~--g~~g~~~~~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP--GYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS--CSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCC--CCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence 8999999999999999999999865433211 111 1111222110 00010 0001234445678999999999
Q ss_pred CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCC-------CCCC---CCccccc--CCCHhHhcccc
Q psy11213 444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR-------YNPK---RSIEQNI--QLPAALLSRFD 511 (621)
Q Consensus 444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~-------~~~~---~~~~~~~--~L~~aLlsRFD 511 (621)
++.++.++.|+.+|+++.++.. .|....+ .++.||+|+|+.... |... ....+.. .++++|++|||
T Consensus 568 ~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~ 645 (758)
T 1r6b_X 568 KAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645 (758)
T ss_dssp GSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred ccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC
Confidence 9999999999999999999875 4666666 678999999985311 1100 0011111 58999999999
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKA 579 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~-~p~ls~~a~~~l~~~ 579 (621)
.+ +..+.++.+....|+++.+... .+ .+..+. ...+++++.++|.++
T Consensus 646 ~~-i~~~~l~~~~~~~i~~~~l~~~------------------~~--~~~~~~~~~~~~~~a~~~l~~~ 693 (758)
T 1r6b_X 646 NI-IWFDHLSTDVIHQVVDKFIVEL------------------QV--QLDQKGVSLEVSQEARNWLAEK 693 (758)
T ss_dssp EE-EECCCCCHHHHHHHHHHHHHHH------------------HH--HHHHTTEEEEECHHHHHHHHHH
T ss_pred cc-eeeCCCCHHHHHHHHHHHHHHH------------------HH--HHHHCCcEEEeCHHHHHHHHHh
Confidence 66 6677888888888887765321 11 111111 457888888888764
No 18
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.37 E-value=1.7e-12 Score=138.17 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=137.0
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhcccc--E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRS--Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~--~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
.+.++|+.|++||||+.++++++...++. . ..++..+.. ..|++. .+...+|...-.+|.+..|++|++|||
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~-~~g~~tga~~~~~g~~~~a~~gtlfld 229 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH-EKGAFTGALTRKKGKLELADQGTLFLD 229 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE-CSCSSSSCCCCEECHHHHTTTSEEEEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc-cccccCCcccccCChHhhcCCCeEEec
Confidence 34599999999999999999999987664 1 122222111 113332 223345555567899999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.|+.+.|..|+.+|+++++.- .|.....+.++.+|||+|..-. .....-.+.+.|+.|+..+-+..++.
T Consensus 230 ei~~l~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~------~~v~~g~fr~dL~~rl~~~~i~lPpL 301 (368)
T 3dzd_A 230 EVGELDQRVQAKLLRVLETGSFTR--LGGNQKIEVDIRVISATNKNLE------EEIKKGNFREDLYYRLSVFQIYLPPL 301 (368)
T ss_dssp TGGGSCHHHHHHHHHHHHHSEECC--BTCCCBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHHHTSEEEECCCG
T ss_pred ChhhCCHHHHHHHHHHHHhCCccc--CCCCcceeeeeEEEEecCCCHH------HHHHcCCccHHHHHHhCCeEEeCCCh
Confidence 999999999999999999998754 4656667788999999996410 11222357889999997655554443
Q ss_pred Ch--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213 521 DR--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA 598 (621)
Q Consensus 521 d~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~ 598 (621)
.+ +.-..+++|.+. ++........+.+++++.+.|..+ .++-++
T Consensus 302 reR~~Di~~l~~~~l~---------------------~~~~~~~~~~~~~~~~a~~~L~~~-------------~wpGNv 347 (368)
T 3dzd_A 302 RERGKDVILLAEYFLK---------------------KFAKEYKKNCFELSEETKEYLMKQ-------------EWKGNV 347 (368)
T ss_dssp GGSTTHHHHHHHHHHH---------------------HHHHHTTCCCCCBCHHHHHHHHTC-------------CCTTHH
T ss_pred hhchhhHHHHHHHHHH---------------------HHHHHcCCCCCCcCHHHHHHHHhC-------------CCCcHH
Confidence 33 223344554432 222111111467999999888764 466789
Q ss_pred HHHHHHHHHHHHHH
Q psy11213 599 RNLLAILRLSTALA 612 (621)
Q Consensus 599 R~leslirla~A~A 612 (621)
|+|+++++.+-..+
T Consensus 348 reL~n~i~~~~~~~ 361 (368)
T 3dzd_A 348 RELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998776543
No 19
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.35 E-value=8.6e-13 Score=141.43 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=133.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhcccc---E--EecCCCCcc---ccceEEEeecCcccceeeeccceeecCCCeeEec
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRS---Q--YTTGRGSSG---VGLTAAVMKDPITNEMVLEGGALVLADQGICCID 440 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~---~--~~~g~~~s~---~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~ID 440 (621)
+.+||+.|++||||+.++++++..+++. . ..++..+.. ..|++. .+...+|.....+|.+-.|+||++|||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlfld 238 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLD 238 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEc
Confidence 4599999999999999999999997653 1 122221110 112221 122234544557899999999999999
Q ss_pred CCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 441 EFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 441 Eidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
|++.|+.+.|..|+.+|+++++.- .|.....+.++.||||+|..-. .....-.+.+.|+.|+..+.+..++.
T Consensus 239 ei~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~rii~at~~~l~------~~~~~g~fr~dl~~rl~~~~i~lPpL 310 (387)
T 1ny5_A 239 EIGELSLEAQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNIK------ELVKEGKFREDLYYRLGVIEIEIPPL 310 (387)
T ss_dssp SGGGCCHHHHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCHH------HHHHTTSSCHHHHHHHTTEEEECCCG
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCCCCHH------HHHHcCCccHHHHHhhcCCeecCCcc
Confidence 999999999999999999998753 4666677788999999997410 11222357889999997655554433
Q ss_pred Ch--HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213 521 DR--DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA 598 (621)
Q Consensus 521 d~--~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~ 598 (621)
.+ +.-..+++|.+. ++........+.+++++.+.|..+ .++-++
T Consensus 311 reR~~Di~~l~~~~l~---------------------~~~~~~~~~~~~~~~~a~~~l~~~-------------~wpGNv 356 (387)
T 1ny5_A 311 RERKEDIIPLANHFLK---------------------KFSRKYAKEVEGFTKSAQELLLSY-------------PWYGNV 356 (387)
T ss_dssp GGCHHHHHHHHHHHHH---------------------HHHHHTTCCCCEECHHHHHHHHHS-------------CCTTHH
T ss_pred hhccccHHHHHHHHHH---------------------HHHHHcCCCCCCCCHHHHHHHHhC-------------CCCcHH
Confidence 22 222334444432 221111111245888988887753 456678
Q ss_pred HHHHHHHHHHHHHH
Q psy11213 599 RNLLAILRLSTALA 612 (621)
Q Consensus 599 R~leslirla~A~A 612 (621)
|+|+++++-+-..|
T Consensus 357 reL~~~i~~~~~~~ 370 (387)
T 1ny5_A 357 RELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988776554
No 20
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.35 E-value=7.3e-13 Score=136.82 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=112.5
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCC---ccccceEEEeecCcccce-eeeccceeecCCCeeEecCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGS---SGVGLTAAVMKDPITNEM-VLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~---s~~gLta~~~~~~~~g~~-~l~~GalvlAd~gi~~IDEidk 444 (621)
..|+||+||||||||++++++++.+....+...... +...+.. ...|.. ....+.+..+.++|++|||++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~-----~~~g~~~~~~~~~~~~~~~~vl~iDEid~ 141 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG-----QYIGHTAPKTKEVLKRAMGGVLFIDEAYY 141 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC-----SSTTCHHHHHHHHHHHHTTSEEEEETGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh-----hcccccHHHHHHHHHhcCCCEEEEEChhh
Confidence 458999999999999999999988643110000000 0000110 000100 0012344456789999999997
Q ss_pred C---------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 445 L---------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 445 ~---------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
+ ....+..|+..|+++ +.++.+|+++|+.. ...-..+.++|.+||+. .+
T Consensus 142 l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~-~i 199 (309)
T 3syl_A 142 LYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADR--------MENFFQSNPGFRSRIAH-HI 199 (309)
T ss_dssp SCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEE-EE
T ss_pred hccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCe-EE
Confidence 6 777889999999864 35678999998751 11112456999999984 55
Q ss_pred ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy11213 516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSY 595 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~ 595 (621)
.++.++.+....|+++.+... ...+++++.+.+.++....+. ...+
T Consensus 200 ~~~~~~~~~~~~il~~~l~~~----------------------------~~~~~~~~~~~l~~~~~~~~~------~~~~ 245 (309)
T 3syl_A 200 EFPDYSDEELFEIAGHMLDDQ----------------------------NYQMTPEAETALRAYIGLRRN------QPHF 245 (309)
T ss_dssp EECCCCHHHHHHHHHHHHHHT----------------------------TCEECHHHHHHHHHHHHHHTT------SSSC
T ss_pred EcCCcCHHHHHHHHHHHHHHc----------------------------CCCCCHHHHHHHHHHHHHhcc------CCCC
Confidence 567777777777777665421 245666777666665443321 1233
Q ss_pred cCHHHHHHHHHHHHHHHH
Q psy11213 596 TSARNLLAILRLSTALAR 613 (621)
Q Consensus 596 ~t~R~leslirla~A~Ak 613 (621)
.+.|.+..+++-+...+.
T Consensus 246 gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 246 ANARSIRNALDRARLRQA 263 (309)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 457777777776655443
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.35 E-value=5.1e-12 Score=131.24 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=89.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeeeccce--eecCCCeeEecCCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGAL--VLADQGICCIDEFDKLP 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~Gal--vlAd~gi~~IDEidk~~ 446 (621)
.++||+|+||||||++++++++.+....+. .+..... .+++ .+.+ .++++|+++|||++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------------~~~l---~~~l~~~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------------PGDL---AAILANSLEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------------HHHH---HHHHTTTCCTTCEEEETTTTSCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------------hHHH---HHHHHHhccCCCEEEEECCcccc
Confidence 389999999999999999999886544322 1111110 0110 0111 13678999999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCC-----eEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCC
Q psy11213 447 DADRTAIHEVMEQQTISIAKAG-----IMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPD 521 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~g-----i~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d 521 (621)
...+..|+.+|+++.+.+--.. .......++.+|+|+|... .+.++|++||+.++ ..+.++
T Consensus 104 ~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-------------~~~~~l~~R~~~~i-~l~~~~ 169 (324)
T 1hqc_A 104 RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFGIVE-HLEYYT 169 (324)
T ss_dssp HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-------------SCSCSTTTTCSCEE-ECCCCC
T ss_pred cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-------------cCCHHHHhcccEEE-ecCCCC
Confidence 9999999999999887652111 1112234688999999762 46788999997444 445566
Q ss_pred hHHHHHHHHHHH
Q psy11213 522 RDNDLKLAQHIT 533 (621)
Q Consensus 522 ~~~d~~ia~~il 533 (621)
.++-..+.++..
T Consensus 170 ~~e~~~~l~~~~ 181 (324)
T 1hqc_A 170 PEELAQGVMRDA 181 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555443
No 22
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.30 E-value=1.3e-12 Score=151.97 Aligned_cols=189 Identities=9% Similarity=0.058 Sum_probs=115.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc---E-Eec-CCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS---Q-YTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~---~-~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
++||+||||||||.+++++++.+.+. . +.. +..... ...+ .|.+ .+++-.+.++|++|||++++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~--~~~~------~~~l---~~~~~~~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK--HSTS------GGQL---TEKVRRKPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS--CCCC---------C---HHHHHHCSSSEEEEECGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc--cccc------cchh---hHHHHhCCCeEEEEeCcccc
Confidence 79999999999999999999986321 1 111 110000 0000 0111 12233446789999999999
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
+++.++.|+.+|+++.+... +.......++.+|+|+|......+...... .-.++++|++|||. .+....++.+.-
T Consensus 592 ~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~-~~~f~p~l~~Rl~~-~i~~~~l~~~~~ 667 (758)
T 3pxi_A 592 HPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSNVGASEKDKVMGEL-KRAFRPEFINRIDE-IIVFHSLEKKHL 667 (758)
T ss_dssp CHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHH-HHHSCHHHHTTSSE-EEECC--CHHHH
T ss_pred CHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCCCChhhHHHHHHHH-HhhCCHHHHhhCCe-EEecCCCCHHHH
Confidence 99999999999999987764 223344567899999997532100000000 11288999999996 555677788777
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213 526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK--GKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA 603 (621)
Q Consensus 526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar--~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les 603 (621)
..|+++.+.. +....+ .....+++++.++|.+.- ..++.++|.|+.
T Consensus 668 ~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~a~~~l~~~~-----------~~~~~~~R~L~~ 715 (758)
T 3pxi_A 668 TEIVSLMSDQ---------------------LTKRLKEQDLSIELTDAAKAKVAEEG-----------VDLEYGARPLRR 715 (758)
T ss_dssp HHHHHHHHHH---------------------HHHHHHTTTCEEEECHHHHHHHHGGG-----------CCTTTTTTTHHH
T ss_pred HHHHHHHHHH---------------------HHHHHHhCCCeEEECHHHHHHHHHhC-----------CCCCCCChHHHH
Confidence 7888776532 222222 124678999988886520 123346777777
Q ss_pred HHH
Q psy11213 604 ILR 606 (621)
Q Consensus 604 lir 606 (621)
+|+
T Consensus 716 ~i~ 718 (758)
T 3pxi_A 716 AIQ 718 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 23
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.3e-11 Score=131.53 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=83.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.+||+||||||||.|++++|+.+...++.... .+...|-+...+++ .+..| ...|+||||+|.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~-----------lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE-----------LFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHH-----------HHHHHHHTCSEEEEEESSSC
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHH-----------HHHHHHHhCCceEeeecchh
Confidence 79999999999999999999997766543211 11111111111000 01111 247999999998
Q ss_pred CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+... ..+.|+..|+.- . -..++.||||+|... .|++||++
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~---------~--~~~~V~vIaATNrpd-------------~LDpAllRpG 308 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGF---------E--TSKNIKIIMATNRLD-------------ILDPALLRPG 308 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTT---------T--CCCCEEEEEEESCSS-------------SSCHHHHSTT
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhcc---------C--CCCCeEEEeccCChh-------------hCCHhHcCCC
Confidence 7432 123444445421 0 123578999999874 69999998
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
||| ..+.++.||.+...+|.+..++
T Consensus 309 RfD-~~I~i~lPd~~~R~~Il~~~~~ 333 (405)
T 4b4t_J 309 RID-RKIEFPPPSVAARAEILRIHSR 333 (405)
T ss_dssp SSC-CEEECCCCCHHHHHHHHHHHHT
T ss_pred cCc-eEEEcCCcCHHHHHHHHHHHhc
Confidence 999 5556689999999998876654
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=132.29 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=99.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee---ecCCCeeEecCCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV---LADQGICCIDEFDKLP 446 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv---lAd~gi~~IDEidk~~ 446 (621)
.++||+|+||||||++++++++.+...++...... +.+...... ... ..+.+- ....+|+||||+|.+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~----l~~~~~g~~-~~~---~~~~~~~a~~~~~~il~iDEid~l~ 220 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS----LTSKYVGEG-EKL---VRALFAVARELQPSIIFIDQVDSLL 220 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC----C-------C-HHH---HHHHHHHHHHSSSEEEEEETGGGGC
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH----hhccccchH-HHH---HHHHHHHHHhcCCeEEEEECchhhc
Confidence 49999999999999999999998766554322111 111100000 000 001111 1234899999999883
Q ss_pred -----------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEE
Q psy11213 447 -----------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL 515 (621)
Q Consensus 447 -----------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~ 515 (621)
...+..|+..|+. .....+.++.||||+|+.. .|++++++||+. .+
T Consensus 221 ~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~~-~i 277 (389)
T 3vfd_A 221 CERREGEHDASRRLKTEFLIEFDG---------VQSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFIK-RV 277 (389)
T ss_dssp --------CTHHHHHHHHHHHHHH---------HC-----CEEEEEEESCGG-------------GCCHHHHTTCCE-EE
T ss_pred ccCCCccchHHHHHHHHHHHHhhc---------ccccCCCCEEEEEecCCch-------------hcCHHHHcCcce-EE
Confidence 3334456666653 2222356789999999863 689999999984 45
Q ss_pred ecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213 516 IQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK 578 (621)
Q Consensus 516 ~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~ 578 (621)
..+.|+.+....+.++++..+ ...++.+.+..+...+ ..++......|.+
T Consensus 278 ~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~~~~la~~~----~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 278 YVSLPNEETRLLLLKNLLCKQ---------GSPLTQKELAQLARMT----DGYSGSDLTALAK 327 (389)
T ss_dssp ECCCCCHHHHHHHHHHHHTTS---------CCCSCHHHHHHHHHHT----TTCCHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence 668899999999988776432 1235666666555443 3345545544444
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.27 E-value=7.6e-12 Score=136.38 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=79.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
++||+||||||||++++.+++.+....+.......+.+ ..+. .+.........+.++|+||||++.++.+.+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~----~ir~----~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVK----EIRE----AIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHH----HHHH----HHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHH----HHHH----HHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 89999999999999999999997665443221111100 0000 000000001134678999999999999999
Q ss_pred hhhHhhhcceEEEEecCCeEEecCCcceEEeec--CCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHH
Q psy11213 451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAA--NPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKL 528 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~--Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~i 528 (621)
..|+..||+++ +.+|+|+ ||. ..+.++|+|||. .+....++.+.-..+
T Consensus 124 ~~LL~~le~~~---------------v~lI~att~n~~-------------~~l~~aL~sR~~--v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 DAFLPHIEDGT---------------ITFIGATTENPS-------------FELNSALLSRAR--VYLLKSLSTEDIEQV 173 (447)
T ss_dssp -CCHHHHHTTS---------------CEEEEEESSCGG-------------GSSCHHHHTTEE--EEECCCCCHHHHHHH
T ss_pred HHHHHHHhcCc---------------eEEEecCCCCcc-------------cccCHHHhCcee--EEeeCCcCHHHHHHH
Confidence 99999999754 4556655 443 368899999995 344677777777777
Q ss_pred HHHHHh
Q psy11213 529 AQHITY 534 (621)
Q Consensus 529 a~~il~ 534 (621)
+++.+.
T Consensus 174 l~~~l~ 179 (447)
T 3pvs_A 174 LTQAME 179 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=1.1e-11 Score=126.51 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=83.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL- 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~- 445 (621)
++||+||||||||++++++++.+....+..... .+... ..|... .....+ .....+|++|||+|.+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGS----ELVKK-----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG----GGCCC-----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH----HHHHh-----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhc
Confidence 899999999999999999999876554332110 01100 001000 000001 1113469999999987
Q ss_pred ----------ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccEE
Q psy11213 446 ----------PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDLL 513 (621)
Q Consensus 446 ----------~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDli 513 (621)
....+..+...++... + ...+.++.||+|+|+.. .+++++++ ||+.
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~ttn~~~-------------~l~~~l~~~~Rf~~- 181 (285)
T 3h4m_A 124 AKRTDALTGGDREVQRTLMQLLAEMD------G--FDARGDVKIIGATNRPD-------------ILDPAILRPGRFDR- 181 (285)
T ss_dssp BCCSSSCCGGGGHHHHHHHHHHHHHH------T--TCSSSSEEEEEECSCGG-------------GBCHHHHSTTSEEE-
T ss_pred ccCccccCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEEEeCCCch-------------hcCHHHcCCCcCCe-
Confidence 3344555655554310 0 01234688999999863 58899999 9985
Q ss_pred EEecCCCChHHHHHHHHHHHh
Q psy11213 514 WLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~ 534 (621)
.+..+.|+.++..+|.++.+.
T Consensus 182 ~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 182 IIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp EEECCCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 566688898888888877653
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.21 E-value=2.2e-11 Score=127.06 Aligned_cols=132 Identities=23% Similarity=0.233 Sum_probs=84.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~ 445 (621)
.++||+||||||||++++++++.+...++..... .+. ....|+.. .....+ .....+|++|||+|.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~----~l~-----~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLV-----SKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 122 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH----HHH-----TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH----HHh-----hcccchHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence 3899999999999999999999876554432110 000 00001100 000001 1123589999999988
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
... .++.++..|+.-. ..+.++.||||+|... .|++++++|||..
T Consensus 123 ~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~-------------~ld~al~~Rf~~~- 178 (322)
T 3eie_A 123 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERR- 178 (322)
T ss_dssp SCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGG-------------GSCHHHHHHCCEE-
T ss_pred hccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChh-------------hCCHHHHcccCeE-
Confidence 653 2455555554310 1234588999999863 5899999999854
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+..+.|+.+....|.++.+.
T Consensus 179 i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 179 IYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp EECCCCCHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHhc
Confidence 56788999988888887653
No 28
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.6e-11 Score=129.56 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=82.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.|||+||||||||.|++++|..+...++..... +...|-+...++. .+..| ...|+||||+|.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~-----------lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQ-----------IFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHH-----------HHHHHHHTCSEEEEEEEESS
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHH-----------HHHHHHhcCCcEEEEehhhh
Confidence 799999999999999999999977665542110 1111111100000 00111 247999999998
Q ss_pred CChh-----------hh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA-----------DR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~-----------~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+... .. ..|+..|+.. .-..++.||||+|... .|++||++
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpG 342 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGF-----------DDRGDVKVIMATNKIE-------------TLDPALIRPG 342 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----------CCSSSEEEEEEESCST-------------TCCTTSSCTT
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCc-----------CCCCCEEEEEeCCChh-------------hcCHHHhcCC
Confidence 6322 12 2344444321 1134578999999874 69999998
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
||| ..+.++.||.+...+|.+..+.
T Consensus 343 RfD-~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 343 RID-RKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp TEE-EEECCCCCCHHHHHHHHHHHHT
T ss_pred cee-EEEEcCCcCHHHHHHHHHHHhc
Confidence 999 4566799999999998876654
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.20 E-value=6.8e-11 Score=123.49 Aligned_cols=134 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc-cccEEe-cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA-RRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
++||+||||||||+|++++++.+ ....+. .+.. +..... ........-.-...-....+|+||||+|.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~-----l~~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD-----LVSKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS-----SCCSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH-----HHhhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccc
Confidence 89999999999999999999987 332221 1111 110000 000000000000001124579999999987332
Q ss_pred -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
..+.++..|+.-. .-+.++.||||+|... .+++++++||| ..+..
T Consensus 121 ~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~-~~i~i 176 (322)
T 1xwi_A 121 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFE-KRIYI 176 (322)
T ss_dssp SSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTT-------------TSCHHHHHTCC-EEEEC
T ss_pred cccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCcc-------------cCCHHHHhhcC-eEEEe
Confidence 2234444454210 1135688999999873 58999999998 45566
Q ss_pred CCCChHHHHHHHHHHHh
Q psy11213 518 DKPDRDNDLKLAQHITY 534 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~ 534 (621)
+.|+.+....|.++.+.
T Consensus 177 ~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 177 PLPEPHARAAMFKLHLG 193 (322)
T ss_dssp CCCCHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 88898888888877653
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.20 E-value=3e-12 Score=117.54 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=79.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
+.||||+|+||||||++++++++.++ ..+..... . +. . .+..|.+..|++|++||||++.++++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~--~--~~---------~--~~~~~~~~~a~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV--E--YL---------I--DMPMELLQKAEGGVLYVGDIAQYSRN 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST--T--HH---------H--HCHHHHHHHTTTSEEEEEECTTCCHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechh--h--CC---------h--HhhhhHHHhCCCCeEEEeChHHCCHH
Confidence 45999999999999999999998865 22111100 0 11 0 01356666788999999999999999
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
.+..|+++|+++. +.++.+|+|+|..... . ..- +.+.|++||..+.+.
T Consensus 91 ~q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~------~-~~~-~~~~L~~rl~~~~i~ 138 (143)
T 3co5_A 91 IQTGITFIIGKAE------------RCRVRVIASCSYAAGS------D-GIS-CEEKLAGLFSESVVR 138 (143)
T ss_dssp HHHHHHHHHHHHT------------TTTCEEEEEEEECTTT------C---C-HHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHhCC------------CCCEEEEEecCCCHHH------H-HhC-ccHHHHHHhcCcEEe
Confidence 9999999999752 5668899999975321 2 222 678899998655443
No 31
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=4.7e-11 Score=128.77 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=82.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.|||+||||||||+|++++|+.+...++.... .+...|-+...++. .+..| ...|+||||+|.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~-----------lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE-----------LFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHH-----------HHHHHHHTCSEEEEEECCTT
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHH-----------HHHHHHhcCCceEeeccccc
Confidence 79999999999999999999997766543211 11111111100000 01111 257999999998
Q ss_pred CChh-----------h---hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA-----------D---RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~-----------~---~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+... . ...++..|+.. .-..++.||||+|... .|++||++
T Consensus 314 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpG 369 (467)
T 4b4t_H 314 VGGARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNRPN-------------TLDPALLRPG 369 (467)
T ss_dssp TSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSCTT-------------SBCHHHHSTT
T ss_pred ccccccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCCcc-------------cCChhhhccc
Confidence 6422 1 12334444321 1134578999999874 69999998
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
||| ..+.++.|+.+...+|.+..++
T Consensus 370 RFD-~~I~i~lPd~~~R~~Ilk~~l~ 394 (467)
T 4b4t_H 370 RID-RKVEFSLPDLEGRANIFRIHSK 394 (467)
T ss_dssp TCC-EEECCCCCCHHHHHHHHHHHHT
T ss_pred ccc-EEEEeCCcCHHHHHHHHHHHhc
Confidence 999 5566789999999999886654
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.19 E-value=5.6e-11 Score=125.80 Aligned_cols=132 Identities=23% Similarity=0.252 Sum_probs=83.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccceee---cCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGALVL---ADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Galvl---Ad~gi~~IDEidk~ 445 (621)
.++||+||||||||+|++++++.+...++..... .+.... .|+.. .....+-. ...+|+||||+|.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~----~l~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS----DLVSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH----HHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH----HHhhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 3899999999999999999999876544332100 011000 01000 00001111 24689999999998
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
... ..+.|+..|+.-. ..+.++.||||+|... .|++++++|||..
T Consensus 156 ~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~- 211 (355)
T 2qp9_X 156 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERR- 211 (355)
T ss_dssp TC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGG-------------GSCHHHHHTCCEE-
T ss_pred cccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcc-------------cCCHHHHcccCEE-
Confidence 743 2455666665311 1134588999999863 5899999999854
Q ss_pred EecCCCChHHHHHHHHHHHh
Q psy11213 515 LIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~ 534 (621)
+..+.|+.+....|.++.+.
T Consensus 212 i~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 212 IYIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp EECCCCCHHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHHh
Confidence 46688998888888877653
No 33
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.4e-11 Score=131.04 Aligned_cols=128 Identities=24% Similarity=0.268 Sum_probs=82.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC---CCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR---GSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~---~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.|||+||||||||.|++++|+.+...++.... .+...|-+...++. .+..| ...|+||||+|.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~-----------lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRD-----------AFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHH-----------HHHHHHHHCSEEEEEECTHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHH-----------HHHHHHhcCCeEEeecchhh
Confidence 79999999999999999999997766544211 01111111100000 00011 357999999987
Q ss_pred CChh-----------h---hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA-----------D---RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~-----------~---~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+... . ...|+..|+.- . -..++.||||+|... .|++||++
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~---------~--~~~~ViVIaaTNrp~-------------~LD~AllRpG 341 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGF---------S--SDDRVKVLAATNRVD-------------VLDPALLRSG 341 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHHTTS---------C--SSCSSEEEEECSSCC-------------CCCTTTCSTT
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHhhcc---------C--CCCCEEEEEeCCCch-------------hcCHhHhcCC
Confidence 4211 1 12355555421 1 134578999999874 69999998
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
||| ..+.++.|+.+...+|.+..++
T Consensus 342 RfD-~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 342 RLD-RKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp SEE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred cee-EEEEeCCcCHHHHHHHHHHHhc
Confidence 999 5556689999999999887664
No 34
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.9e-11 Score=129.50 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=82.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeec---CCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLA---DQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlA---d~gi~~IDEidk~ 445 (621)
.|||+||||||||+|++++|+.+...++..... .+. +...|+ ..+. ..+..| ...|+||||+|.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s----~l~-----sk~~Gese~~ir-~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS----GIV-----DKYIGESARIIR-EMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG----GTC-----CSSSSHHHHHHH-HHHHHHHHSCSEEEEEECCCSS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh----hhc-----cccchHHHHHHH-HHHHHHHhcCCceeeeeccccc
Confidence 799999999999999999999977665432110 011 000111 0000 001111 3579999999986
Q ss_pred Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
... ..+.|+..|+... -..++.||||+|... .|++||++ |
T Consensus 287 ~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~-------------~LDpAllRpGR 342 (437)
T 4b4t_L 287 GGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPD-------------TLDPALLRPGR 342 (437)
T ss_dssp SCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTT-------------SSCTTTTSTTS
T ss_pred ccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCch-------------hhCHHHhCCCc
Confidence 321 1234555565311 124578999999774 69999997 5
Q ss_pred ccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|| ..+.++.||.+...+|.+..+.
T Consensus 343 fD-~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 343 LD-RKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp EE-EEECCCCCCHHHHHHHHHHHHH
T ss_pred cc-eeeecCCcCHHHHHHHHHHHhc
Confidence 99 5566689999999999886664
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.19 E-value=3.3e-11 Score=141.87 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=117.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc---cE-Eec-CCCCcc---ccceEEEeecCcccceeee-cc----ceeecCCCe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR---SQ-YTT-GRGSSG---VGLTAAVMKDPITNEMVLE-GG----ALVLADQGI 436 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr---~~-~~~-g~~~s~---~gLta~~~~~~~~g~~~l~-~G----alvlAd~gi 436 (621)
.++||+||||||||++++++++.+.+ .. +.. +..... ..+.++. .|....+ .| ++-.+.+||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~-----~~~~G~~~~g~l~~~~~~~~~~v 663 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP-----PGYVGYEEGGQLTEAVRRRPYSV 663 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-------------------CHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCC-----CCCcCccccchHHHHHHhCCCeE
Confidence 48999999999999999999998743 22 221 111110 1121110 0100011 12 223345789
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCC-----CC--CCccc------ccCCC
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYN-----PK--RSIEQ------NIQLP 503 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~-----~~--~~~~~------~~~L~ 503 (621)
++|||+++++++.++.|+.+|+++.+.-. .|....+ .++.||+|+|.....+. +. ..+.+ .-.+.
T Consensus 664 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~ 741 (854)
T 1qvr_A 664 ILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 741 (854)
T ss_dssp EEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred EEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999988743 3444443 34679999997311000 00 00111 22578
Q ss_pred HhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH-HcC-CCCCCHHHHHHHHHHHH
Q psy11213 504 AALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC-KGK-NPTVPSSLTEHIVKAYT 581 (621)
Q Consensus 504 ~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a-r~~-~p~ls~~a~~~l~~~y~ 581 (621)
++|++|||.+++. .+++.+.-..|+++.+.. +.... +.. .+.+++++.++|.++.
T Consensus 742 ~~l~~Rl~~~i~~-~pl~~edi~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~~a~~~L~~~~- 798 (854)
T 1qvr_A 742 PEFLNRLDEIVVF-RPLTKEQIRQIVEIQLSY---------------------LRARLAEKRISLELTEAAKDFLAERG- 798 (854)
T ss_dssp HHHHHTCSBCCBC-CCCCHHHHHHHHHHHHHH---------------------HHHHHHTTTCEEEECHHHHHHHHHHH-
T ss_pred HHHHHhcCeEEeC-CCCCHHHHHHHHHHHHHH---------------------HHHHHHhCCceEEECHHHHHHHHHcC-
Confidence 9999999966665 447777777777776532 11111 111 3568888888887641
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHH
Q psy11213 582 ELRKVARNSRDMSYTSARNLLAILRL 607 (621)
Q Consensus 582 ~lR~~~~~~~~~~~~t~R~leslirl 607 (621)
. ..+.++|.|..+++-
T Consensus 799 ------~----~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 799 ------Y----DPVFGARPLRRVIQR 814 (854)
T ss_dssp ------C----BTTTBTSTHHHHHHH
T ss_pred ------C----CCCCChHHHHHHHHH
Confidence 1 113456777776653
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3e-11 Score=130.15 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=84.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.+||+||||||||+|++++|+.+...++..... +...|-+...+++ .+..| ...|+||||+|.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~-----------lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRD-----------VFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHH-----------HHHHHHHTCSEEEEEECTHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHH-----------HHHHHHHcCCCeeechhhhh
Confidence 699999999999999999999987666542111 1111111111000 01111 247999999986
Q ss_pred CCh-----------h---hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPD-----------A---DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~-----------~---~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+.. . ..+.|+..|+.- . -..++.||||+|... .|++||++
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~---------~--~~~~v~vI~aTN~~~-------------~LD~AllRpG 332 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGF---------D--QSTNVKVIMATNRAD-------------TLDPALLRPG 332 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHS---------C--SSCSEEEEEEESCSS-------------SCCHHHHSSS
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCC---------C--CCCCEEEEEecCChh-------------hcChhhhcCC
Confidence 321 1 124455555431 0 123478999999774 69999998
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|||..+.+.+.|+.+....|.+..+.
T Consensus 333 Rfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 333 RLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp SEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 99977777678999999888887664
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.18 E-value=7.1e-11 Score=124.91 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=52.0
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
||++|||++.++.+.++.|+..|++....+ ....-+....++++++.. ....++++|+|||..
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~-- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLI-- 253 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEE--
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCCC-----------CcccCCHHHHhhccE--
Confidence 699999999999999999999998632111 000001112333333211 113589999999954
Q ss_pred EecCCCChHHHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il 533 (621)
+....++.++...++++.+
T Consensus 254 i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp EEECCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHH
Confidence 4667777777777766554
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=9.2e-12 Score=114.53 Aligned_cols=114 Identities=15% Similarity=0.246 Sum_probs=77.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
+.||||+|+||||||++++++++.+++.. ..-. +.++...+ . ....|.+..|++|++||||++.++++
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~------~~~v-~~~~~~~~---~--~~~~~~~~~a~~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQ------GEFV-YRELTPDN---A--PQLNDFIALAQGGTLVLSHPEHLTRE 91 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTT------SCCE-EEECCTTT---S--SCHHHHHHHHTTSCEEEECGGGSCHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccC------CCEE-EECCCCCc---c--hhhhcHHHHcCCcEEEEcChHHCCHH
Confidence 45999999999999999999999865421 0001 11110000 0 12345666788999999999999999
Q ss_pred hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 449 DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 449 ~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
.+..|+.+|+. .+.++.+|+|+|.... .....-.+.+.|+.|+..+
T Consensus 92 ~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~------~~~~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 92 QQYHLVQLQSQ-------------EHRPFRLIGIGDTSLV------ELAASNHIIAELYYCFAMT 137 (145)
T ss_dssp HHHHHHHHHHS-------------SSCSSCEEEEESSCHH------HHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------cCCCEEEEEECCcCHH------HHHHcCCCCHHHHHHhcCC
Confidence 99999999932 2456789999997511 1112235778888887533
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.17 E-value=7.5e-11 Score=124.91 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=98.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccce---eecCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGAL---VLADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~Gal---vlAd~gi~~IDEidk~ 445 (621)
.++||+||||||||++++++++.+...++..... .+.. ...|+.. .....+ ..+..+|+||||+|.+
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~----~l~~-----~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l 188 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISAS----SLTS-----KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG----GGCC-----SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH----Hhhc-----cccchHHHHHHHHHHHHHhcCCeEEEEeCchhh
Confidence 4899999999999999999999875544321110 0110 0011100 000011 1124689999999887
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
... .++.++..|+.. ....+.++.||||+|+.. .|++++++||+ ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf~-~~ 245 (357)
T 3d8b_A 189 LSQRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRPQ-------------EIDEAARRRLV-KR 245 (357)
T ss_dssp TBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG-------------GBCHHHHTTCC-EE
T ss_pred hccCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCChh-------------hCCHHHHhhCc-eE
Confidence 432 234566666532 222356789999999863 58899999998 45
Q ss_pred EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q psy11213 515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVK 578 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~ 578 (621)
+....|+.+....+..+.+... ...++.+.+..+...+ ..++......|.+
T Consensus 246 i~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~l~~la~~t----~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 246 LYIPLPEASARKQIVINLMSKE---------QCCLSEEEIEQIVQQS----DAFSGADMTQLCR 296 (357)
T ss_dssp EECCCCCHHHHHHHHHHHHHTS---------CBCCCHHHHHHHHHHT----TTCCHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhhc---------CCCccHHHHHHHHHHc----CCCCHHHHHHHHH
Confidence 5568889988888888776432 1235566666555544 3445544444444
No 40
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.17 E-value=9.4e-11 Score=149.53 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=125.0
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEe--c-CCCCccccceEEEeecCcccceeeeccceeec----CCCeeEec
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT--T-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA----DQGICCID 440 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA----d~gi~~ID 440 (621)
++.|+||+||||||||++++.+....+..... . ...+++..+.. ..... ........|.+..+ ...|+|||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~-~i~~~-~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS-ALHRH-TNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHH-HHHHH-BCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHH-HHHHH-hhhccccCCccccCCCCCceEEEEec
Confidence 56799999999999999996555443322111 0 11111110100 00000 00001112333222 23599999
Q ss_pred CCCCCChh------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC--CCCCCCCCCcccccCCCHhHhccccE
Q psy11213 441 EFDKLPDA------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA--YGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 441 Eidk~~~~------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~--~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
|+|....+ ....|.+.||.+.+...+.+....+ .++.+|||+||. +|| ..|+++|++||
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR----------~~l~~rllRrf-- 1410 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGR----------IPMSERFTRHA-- 1410 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTC----------CCCCHHHHTTE--
T ss_pred ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCC----------ccCChhhhhee--
Confidence 99875443 4678888899888877666666666 789999999998 566 36999999999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC-C
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS-R 591 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~-~ 591 (621)
.++..+.|+.+....|...++..+.... . .+ ..+.+...+...+.|..+++.-... +
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~l~~~----------~-~v-----------~~~~~~lv~ati~~y~~v~~~~~~~~k 1468 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAIFKLV----------P-EF-----------RSYTEPFARASVHLYNECKARYSTGLQ 1468 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHHTTSS----------G-GG-----------GGGHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHhccC----------H-HH-----------HHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 6678899999999999998877653210 0 01 1233455667777887777653211 1
Q ss_pred CCCccCHHHHHHHHH
Q psy11213 592 DMSYTSARNLLAILR 606 (621)
Q Consensus 592 ~~~~~t~R~leslir 606 (621)
.....++|.+-.+++
T Consensus 1469 ~HY~FnlRDLsrv~q 1483 (2695)
T 4akg_A 1469 SHYLFSPRELTRLVR 1483 (2695)
T ss_dssp TTCCCCHHHHHHHHH
T ss_pred CCcccCHHHHHHHHH
Confidence 233478888876654
No 41
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.16 E-value=1.8e-10 Score=125.66 Aligned_cols=136 Identities=21% Similarity=0.193 Sum_probs=81.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc-cccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA-RRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~-pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
.++||+||||||||+|++++++.+ ...++... .+. +........ .......-........+|+||||+|.+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~-~~~---l~~~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 242 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSIS-SSD---LVSKWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGS 242 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC-CC------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe-HHH---HHhhhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhccC
Confidence 389999999999999999999987 33222211 110 111100000 000000000001124589999999998432
Q ss_pred -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
..+.++..|+.-. .-+.++.||||+|... .|+++|++|||. .+..
T Consensus 243 ~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~-~i~i 298 (444)
T 2zan_A 243 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEK-RIYI 298 (444)
T ss_dssp SSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCGG-------------GSCHHHHTTCCE-EEEC
T ss_pred CCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCcc-------------ccCHHHHhhcce-EEEe
Confidence 2344555554310 1245689999999873 589999999985 4556
Q ss_pred CCCChHHHHHHHHHHHh
Q psy11213 518 DKPDRDNDLKLAQHITY 534 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~ 534 (621)
+.|+.+....|.++.+.
T Consensus 299 ~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 299 PLPEAHARAAMFRLHLG 315 (444)
T ss_dssp CCCCHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 88898888888776653
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.15 E-value=1.6e-10 Score=118.62 Aligned_cols=137 Identities=22% Similarity=0.214 Sum_probs=81.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCccccee-eeccceeecCCCeeEecCCCCCChh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV-LEGGALVLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~-l~~GalvlAd~gi~~IDEidk~~~~ 448 (621)
.++||+||||||||++++++++.+....+...... +..... . ..+... ..-+....+..++++|||+|.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~----l~~~~~-~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAAS----LTSKYV-G-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT----TSSSSC-S-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH----Hhhccc-c-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 38999999999999999999998765443211100 000000 0 000000 0000011234689999999988543
Q ss_pred -----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 449 -----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 449 -----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
.++.++..|+..... ....++.||+|+|... .+++++++||+ ..+..
T Consensus 129 ~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~-------------~l~~~l~~R~~-~~i~~ 186 (297)
T 3b9p_A 129 RSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ-------------ELDEAALRRFT-KRVYV 186 (297)
T ss_dssp C-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG-------------GBCHHHHHHCC-EEEEC
T ss_pred cccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh-------------hCCHHHHhhCC-eEEEe
Confidence 334455555532111 1124578999999763 58899999998 45566
Q ss_pred CCCChHHHHHHHHHHHh
Q psy11213 518 DKPDRDNDLKLAQHITY 534 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~ 534 (621)
+.|+.+....+.++.+.
T Consensus 187 ~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 187 SLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp CCCCHHHHHHHHHHHHG
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 78888888888777654
No 43
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=2.9e-10 Score=119.23 Aligned_cols=134 Identities=22% Similarity=0.249 Sum_probs=84.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE-EecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecCCCCCChh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDEFDKLPDA 448 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDEidk~~~~ 448 (621)
|++|+||||+|||+|++.+++.+.... +++|..... .+... +.+ .+..+.|++|||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------------~~~l~---~~~~~~~~~~v~~iDE~~~l~~~ 117 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------------QGDMA---AILTSLERGDVLFIDEIHRLNKA 117 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------------HHHHH---HHHHHCCTTCEEEEETGGGCCHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------------HHHHH---HHHHHccCCCEEEEcchhhcCHH
Confidence 899999999999999999999864332 233321110 00000 000 0234689999999999988
Q ss_pred hhhhhHhhhcceEEEE--ecC---CeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChH
Q psy11213 449 DRTAIHEVMEQQTISI--AKA---GIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRD 523 (621)
Q Consensus 449 ~~~~L~eame~q~isi--~k~---gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~ 523 (621)
.+..|+.+|+...+.+ .+. ........++.+++++|... .|++++.+||. +....|.++.+
T Consensus 118 ~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-------------~Ls~~l~sR~~-l~~~Ld~~~~~ 183 (334)
T 1in4_A 118 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFG-IILELDFYTVK 183 (334)
T ss_dssp HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCS-EEEECCCCCHH
T ss_pred HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-------------cCCHHHHHhcC-ceeeCCCCCHH
Confidence 8889988887653221 110 01111223577777777652 68999999996 44666778777
Q ss_pred HHHHHHHHHH
Q psy11213 524 NDLKLAQHIT 533 (621)
Q Consensus 524 ~d~~ia~~il 533 (621)
+-..+.++..
T Consensus 184 ~l~~iL~~~~ 193 (334)
T 1in4_A 184 ELKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666666553
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.14 E-value=2.3e-11 Score=125.36 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=80.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecccee-------ecCCCeeEecCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALV-------LADQGICCIDEF 442 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Galv-------lAd~gi~~IDEi 442 (621)
..+||+||||||||+|++++|+.+...++....+ ++.....-. +... + ...+- ....+|++|||+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~----~l~~~~~g~--~~~~-i-~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG----ELESGNAGE--PAKL-I-RQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH----HHHCC---H--HHHH-H-HHHHHHHHHHHTTSSCCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH----HhhhccCch--hHHH-H-HHHHHHHHHHHhcCCCeEEEEech
Confidence 3799999999999999999999875544321100 011000000 0000 0 00111 125689999999
Q ss_pred CCCCh-------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc-
Q psy11213 443 DKLPD-------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS- 508 (621)
Q Consensus 443 dk~~~-------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls- 508 (621)
|++.+ ..++.|++.|+..+..-........-..++.||||+|... .|+++|++
T Consensus 109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~R~ 175 (293)
T 3t15_A 109 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLIRD 175 (293)
T ss_dssp C--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHHHH
T ss_pred hhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHhCC
Confidence 98765 2347888888754322111111122345689999999763 58899995
Q ss_pred -cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 -RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 -RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|||.++. .|+.+...+|+++++.
T Consensus 176 ~R~d~~i~---~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 176 GRMEKFYW---APTREDRIGVCTGIFR 199 (293)
T ss_dssp HHEEEEEE---CCCHHHHHHHHHHHHG
T ss_pred CCCceeEe---CcCHHHHHHHHHHhcc
Confidence 9997665 4788998999887654
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.12 E-value=4.6e-10 Score=123.17 Aligned_cols=195 Identities=17% Similarity=0.168 Sum_probs=115.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecCcccceeeeccc----eeecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDPITNEMVLEGGA----LVLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~~~g~~~l~~Ga----lvlAd~gi~~IDEidk~ 445 (621)
|+||+||||||||++++.+++.+.+...-.. .+..-..+..+ ....|++.-.-.. +..+.++|+||| .
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~ 275 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A 275 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----C
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C
Confidence 9999999999999999999998643211000 00000001111 0112222111011 111347899999 4
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
..+.++.|+.+|+.+ ++.+|+|+|+.. +...+.++++|++||. .+.++.|+.+..
T Consensus 276 ~~~a~~~L~~~L~~g---------------~v~vI~at~~~e--------~~~~~~~~~al~~Rf~--~i~v~~p~~e~~ 330 (468)
T 3pxg_A 276 AIDASNILKPSLARG---------------ELQCIGATTLDE--------YRKYIEKDAALERRFQ--PIQVDQPSVDES 330 (468)
T ss_dssp --------CCCTTSS---------------SCEEEEECCTTT--------THHHHTTCSHHHHSEE--EEECCCCCHHHH
T ss_pred chhHHHHHHHhhcCC---------------CEEEEecCCHHH--------HHHHhhcCHHHHHhCc--cceeCCCCHHHH
Confidence 455667788888744 467999999873 3344578999999995 478899999998
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHHH
Q psy11213 526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLA 603 (621)
Q Consensus 526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~les 603 (621)
..|.++++..+... ....++.+.+...+.++..+ ...+++.+.+.+...-...+-.. ...+..+++++.
T Consensus 331 ~~iL~~~~~~~~~~-----~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~----~~~p~~i~~l~~ 401 (468)
T 3pxg_A 331 IQILQGLRDRYEAH-----HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS----FTTPPNLKELEQ 401 (468)
T ss_dssp HHHHHHTTTTSGGG-----SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT----TSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc----CCCchHHHHHHH
Confidence 99988776432211 22458889999999988876 55688899988876543333321 234455677665
Q ss_pred HHH
Q psy11213 604 ILR 606 (621)
Q Consensus 604 lir 606 (621)
.+.
T Consensus 402 ~i~ 404 (468)
T 3pxg_A 402 KLD 404 (468)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.12 E-value=3.9e-10 Score=144.61 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=128.8
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccE-EecC--CCCccccceEEEeecCcccceeeec--cceeecC--C--CeeE
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQ-YTTG--RGSSGVGLTAAVMKDPITNEMVLEG--GALVLAD--Q--GICC 438 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~-~~~g--~~~s~~gLta~~~~~~~~g~~~l~~--GalvlAd--~--gi~~ 438 (621)
.+.||||+||||||||.+++.....++... .... ..+++..+.+.. + ...++.... |.+..+- | .|+|
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~--e-~~~e~~~~~~~G~~~~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTF--D-HHCEYKRTPSGETVLRPTQLGKWLVVF 1379 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHH--H-HHEEEEECTTSCEEEEESSTTCEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHH--h-hcceEEeccCCCcccCCCcCCceEEEE
Confidence 668999999999999988866554443321 1111 111111111100 0 011222222 7776663 2 3999
Q ss_pred ecCCCCCChh------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCC--CCCCCCCCcccccCCCHhHhccc
Q psy11213 439 IDEFDKLPDA------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY--GRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 439 IDEidk~~~~------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~--g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
|||+|....+ ....|+++|+.+.+...+.+....+ .++.++||+||.+ || ..|++.|++||
T Consensus 1380 iDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr----------~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1380 CDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGR----------VQLTHRFLRHA 1448 (3245)
T ss_dssp ETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTC----------CCCCHHHHTTC
T ss_pred ecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCC----------ccCCHHHHhhc
Confidence 9999987654 5678999999988887666666666 6799999999983 55 47999999999
Q ss_pred cEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNS 590 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~ 590 (621)
.++..+.|+.+....|...++..+... . +. + ..+.+...+..++.|..+++.-...
T Consensus 1449 --~vi~i~~ps~esL~~If~til~~~l~~-~-----p~-----l-----------~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A 1449 --PILLVDFPSTSSLTQIYGTFNRALMKL-L-----PN-----L-----------RSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp --CEEECCCCCHHHHHHHHHHHHHHHTTS-C-----GG-----G-----------TTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred --eEEEeCCCCHHHHHHHHHHHHHHHHhh-C-----hH-----H-----------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567789999999888887766543210 0 00 0 1234567778888888887753221
Q ss_pred -CCCCccCHHHHHHHHH
Q psy11213 591 -RDMSYTSARNLLAILR 606 (621)
Q Consensus 591 -~~~~~~t~R~leslir 606 (621)
+.....++|.+-.+++
T Consensus 1505 ~k~HY~FnLRDLsrv~q 1521 (3245)
T 3vkg_A 1505 IQAHYIYSPRELSRWDR 1521 (3245)
T ss_dssp TSTTCCCCHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHH
Confidence 1223368898877655
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=117.30 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=77.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~ 446 (621)
++||+||||||||++++++++.+....+.. +..... ... ..+...+ .+.+..+ ..+|++|||+|.+.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~--~~~------~~~~~~~-~~~~~~a~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE--VIG------GLGAARV-RSLFKEARARAPCIVYIDEIDAVG 111 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS--SST------THHHHHH-HHHHHHHHHTCSEEEEEECC----
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh--hcc------ChhHHHH-HHHHHHHHhcCCeEEEEeCcchhh
Confidence 899999999999999999999865544321 111000 000 0000000 0111111 25799999999983
Q ss_pred ------------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213 447 ------------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL 512 (621)
Q Consensus 447 ------------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl 512 (621)
...+..+.+.++. +. +. .-+.++.+|+|+|... .+++++++ |||.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~ll~~----~~--~~--~~~~~~~vi~~tn~~~-------------~ld~~l~~~~R~~~ 170 (262)
T 2qz4_A 112 KKRSTTMSGFSNTEEEQTLNQLLVE----MD--GM--GTTDHVIVLASTNRAD-------------ILDGALMRPGRLDR 170 (262)
T ss_dssp ---------------CHHHHHHHHH----HH--TC--CTTCCEEEEEEESCGG-------------GGGSGGGSTTSCCE
T ss_pred ccccccccCccchhHHHHHHHHHHH----hh--Cc--CCCCCEEEEecCCChh-------------hcCHHHhcCCcCCe
Confidence 2333344444331 00 00 1134688999999763 47789998 9985
Q ss_pred EEEecCCCChHHHHHHHHHHHhh
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~ 535 (621)
.+..+.|+.++..++.++.+..
T Consensus 171 -~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 171 -HVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp -EEECCSCCHHHHHHHHHHHHHH
T ss_pred -EEEeCCcCHHHHHHHHHHHHHh
Confidence 4556888998888888887653
No 48
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.12 E-value=5.5e-10 Score=142.61 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=134.6
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
-+.++++.||||||||.+++++|+.+.+..+. +..+.....+ |.. -.|+ ...|.++|+||||++
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g~--~~~Gaw~~~DE~nr~ 709 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVGI--TQIGAWGCFDEFNRL 709 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHHH--HHHTCEEEEETTTSS
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHHH--HhcCCEeeehhhhhc
Confidence 44678999999999999999999998876543 2222221111 110 0111 124789999999999
Q ss_pred Chhhhhhh-------HhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecC
Q psy11213 446 PDADRTAI-------HEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQD 518 (621)
Q Consensus 446 ~~~~~~~L-------~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d 518 (621)
+++..+.+ .++|.++..++.-.|....++..|.|++|+||.+ .+..+||++|.+|| ..+..+
T Consensus 710 ~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy---------~g~~eLP~~Lk~~F--r~v~m~ 778 (2695)
T 4akg_A 710 DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGY---------NGRSELPENLKKSF--REFSMK 778 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCS---------SSSCCCCHHHHTTE--EEEECC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCc---------cCcccccHHHHhhe--EEEEee
Confidence 99998887 7777666655555798999999999999999962 34468999999999 677778
Q ss_pred CCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCH
Q psy11213 519 KPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSA 598 (621)
Q Consensus 519 ~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~ 598 (621)
.||.+...++.-.. . ++...+..+..++..|..+|..... ......+.
T Consensus 779 ~Pd~~~i~ei~l~s-----------------------------~--Gf~~a~~la~kiv~~~~l~~e~ls~-q~hydfgl 826 (2695)
T 4akg_A 779 SPQSGTIAEMILQI-----------------------------M--GFEDSKSLASKIVHFLELLSSKCSS-MNHYHFGL 826 (2695)
T ss_dssp CCCHHHHHHHHHHH-----------------------------H--HCSSHHHHHHHHHHHHHHHHHHSCC-CTTCCCSH
T ss_pred CCCHHHHHHHHHHh-----------------------------c--CCCchHHHHHHHHHHHHHHHHHhCc-CCcccccH
Confidence 88876554443221 1 1344556778889999888875332 23344689
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11213 599 RNLLAILRLSTALARL 614 (621)
Q Consensus 599 R~leslirla~A~Akl 614 (621)
|.+.++++.|.+..+-
T Consensus 827 RalksvL~~ag~lkr~ 842 (2695)
T 4akg_A 827 RTLKGVLRNCSPLISE 842 (2695)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999988765543
No 49
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.11 E-value=1.3e-09 Score=119.23 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=84.4
Q ss_pred CeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 435 GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 435 gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
+|++|||+++|+.+..++|+.+||+. +..+.|+|+ |+..+.=...........|+++++|||- +
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~-~- 360 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVM-I- 360 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEE-E-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHhhcc-e-
Confidence 79999999999999999999999963 222333344 4410000000012223469999999994 3
Q ss_pred EecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy11213 515 LIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMS 594 (621)
Q Consensus 515 ~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~ 594 (621)
+....++.++-.++.++.... ....+++++.++|.+... .
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~----------------------------~~~~~~~~~~~~i~~~a~------~------ 400 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQT----------------------------EGINISEEALNHLGEIGT------K------ 400 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHH----------------------------HTCCBCHHHHHHHHHHHH------H------
T ss_pred eeCCCCCHHHHHHHHHHHHHH----------------------------hCCCCCHHHHHHHHHHcc------C------
Confidence 366666666655555544321 135678888777766421 1
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy11213 595 YTSARNLLAILRLSTALARLRLCDEFQ 621 (621)
Q Consensus 595 ~~t~R~leslirla~A~Akl~lr~~V~ 621 (621)
.++|....+++.|.+.|.+++++.|+
T Consensus 401 -g~~r~a~~ll~~a~~~A~~~~~~~v~ 426 (456)
T 2c9o_A 401 -TTLRYSVQLLTPANLLAKINGKDSIE 426 (456)
T ss_dssp -SCHHHHHHTHHHHHHHHHHTTCSSBC
T ss_pred -CCHHHHHHHHHHHHHHHhhcCCCccC
Confidence 26898889999999999988888775
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.10 E-value=2.6e-10 Score=114.65 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=78.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~ 446 (621)
++||+||||||||++++++++.++...+ ..+...... ..+ .+...+ .+.+-.| ..++++|||+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~-------~~~~~~-~~~~~~a~~~~~~il~iDeid~l~ 117 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG-------VGASRV-RDMFEQAKKAAPCIIFIDEIDAVG 117 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCC-------CCHHHH-HHHHHHHHTTCSEEEEETTHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhh-------hhHHHH-HHHHHHHHHcCCeeehhhhhhhhc
Confidence 7999999999999999999998764433 222211110 000 000000 0111112 23699999998765
Q ss_pred hhh--------------hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213 447 DAD--------------RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF 510 (621)
Q Consensus 447 ~~~--------------~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF 510 (621)
... ...++..|+.- .-+.++.||||+|... .+++++++ ||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~~-------------~l~~~l~r~~rf 173 (257)
T 1lv7_A 118 RQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRF 173 (257)
T ss_dssp CCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTTSS
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCEEEEEeeCCch-------------hCCHHHcCCCcC
Confidence 432 22344444321 1145678999999873 57889988 99
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il 533 (621)
|. .+..+.|+.+...+|.++.+
T Consensus 174 ~~-~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 174 DR-QVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp CE-EEECCCCCHHHHHHHHHHHH
T ss_pred Ce-EEEeCCCCHHHHHHHHHHHH
Confidence 85 55667888888877777654
No 51
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.09 E-value=4.3e-10 Score=121.53 Aligned_cols=133 Identities=22% Similarity=0.321 Sum_probs=87.1
Q ss_pred CCCeeEecCCCCCChh------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeec-----CCCCCCCCCCCC
Q psy11213 433 DQGICCIDEFDKLPDA------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAA-----NPAYGRYNPKRS 495 (621)
Q Consensus 433 d~gi~~IDEidk~~~~------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~-----Np~~g~~~~~~~ 495 (621)
.+|++++|||||+... .|.+|+++||..+++. +.+ .... .++.+|||+ ||.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~-~~d~-~~ilfI~~gaf~~~~~~--------- 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG-MVKT-DHILFIASGAFQVARPS--------- 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTE-EEEC-TTCEEEEEECCSSCCGG---------
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccc-eecC-CcEEEEeccccccCChh---------
Confidence 6789999999998643 5679999999877665 332 2222 336677775 543
Q ss_pred cccccCCCHhHhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHH
Q psy11213 496 IEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLT 573 (621)
Q Consensus 496 ~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~ 573 (621)
++-++|++||+.+ +..+..+.++-.+|+..- ....+++|.+..... ...++++|.
T Consensus 318 -----dlipel~~R~~i~-i~l~~lt~~e~~~Il~~~-----------------~~~l~~q~~~~~~~~~~~l~~~~~al 374 (444)
T 1g41_A 318 -----DLIPELQGRLPIR-VELTALSAADFERILTEP-----------------HASLTEQYKALMATEGVNIAFTTDAV 374 (444)
T ss_dssp -----GSCHHHHTTCCEE-EECCCCCHHHHHHHHHSS-----------------TTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred -----hcchHHhccccee-eeCCCCCHHHHHHHHHHH-----------------HHhHHHHHHHHhcccCceEEECHHHH
Confidence 3558999999844 445666777766666310 112456666554432 567899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q psy11213 574 EHIVKAYTELRKVARNSRDMSYTSARNLLAILR 606 (621)
Q Consensus 574 ~~l~~~y~~lR~~~~~~~~~~~~t~R~leslir 606 (621)
+.|++.+.++...... +..|.|++++.
T Consensus 375 ~~i~~~a~~~~~~t~~------~GaR~L~~~ie 401 (444)
T 1g41_A 375 KKIAEAAFRVNEKTEN------IGARRLHTVME 401 (444)
T ss_dssp HHHHHHHHHHHHHSCC------CGGGHHHHHHH
T ss_pred HHHHHHHHHhccCCcc------CCchHHHHHHH
Confidence 9999987665332221 45777776665
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.00 E-value=7.7e-11 Score=119.18 Aligned_cols=132 Identities=25% Similarity=0.278 Sum_probs=81.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+......-...+.+ .+... ..+.+-.| ..+|++|||+|.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~-------~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG-------LGASR-VRDLFETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS-------SCSSS-SSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc-------hHHHH-HHHHHHHHHhcCCeEEEEeChhhhcc
Confidence 69999999999999999999986554332211100000000 00000 01111112 248999999999865
Q ss_pred h---------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cc
Q psy11213 448 A---------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RF 510 (621)
Q Consensus 448 ~---------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RF 510 (621)
. .+..|+..|+.. ...+.++.||+|+|... .|++++++ ||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~~-------------~ld~~l~r~~Rf 174 (268)
T 2r62_A 118 SRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRPE-------------ILDPALMRPGRF 174 (268)
T ss_dssp ----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCCT-------------TSCGGGGSSSSS
T ss_pred cccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCch-------------hcCHhHcCCCCC
Confidence 4 234555555531 01234578999999873 47889998 99
Q ss_pred cEEEEecCCCChHHHHHHHHHHHh
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il~ 534 (621)
+. .+....|+.++..++.++.+.
T Consensus 175 ~~-~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 175 DR-QVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CC-CCBCCCCCTTTHHHHHHHHTS
T ss_pred Ce-EEEecCcCHHHHHHHHHHHHh
Confidence 84 455677888888888877653
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.99 E-value=3.3e-10 Score=124.75 Aligned_cols=131 Identities=23% Similarity=0.258 Sum_probs=86.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccce-eeeccceeecC---CCeeEecCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEM-VLEGGALVLAD---QGICCIDEFDK 444 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~-~l~~GalvlAd---~gi~~IDEidk 444 (621)
..++||+||||||||++++++++.+...++..... .+. ....|+. ....+++-.|. .+++||||+|.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~----~l~-----~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM-----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHH----HHH-----TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEch----Hhh-----hhhcchhHHHHHHHHHHHHhcCCcEEEecchhh
Confidence 34799999999999999999999875444321100 000 0000100 00112233332 35999999977
Q ss_pred CCh-----------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 445 LPD-----------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 445 ~~~-----------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
+.+ ..++.|+..|+.. ..+.++.||||+|... .|++++.+ ||+
T Consensus 309 l~~~~~~~~~~~~~~~~~~LL~~ld~~-----------~~~~~v~vIaaTn~~~-------------~Ld~al~r~gRf~ 364 (489)
T 3hu3_A 309 IAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIVMAATNRPN-------------SIDPALRRFGRFD 364 (489)
T ss_dssp HCBCTTSCCCHHHHHHHHHHHHHHHHS-----------CTTSCEEEEEEESCGG-------------GBCGGGGSTTSSC
T ss_pred hccccccccchHHHHHHHHHHHHhhcc-----------ccCCceEEEEecCCcc-------------ccCHHHhCCCcCc
Confidence 654 4567788888742 1245689999999863 47899998 998
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il 533 (621)
.. +....|+.+...+|.+..+
T Consensus 365 ~~-i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 365 RE-VDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp EE-EECCCCCHHHHHHHHHHHT
T ss_pred eE-EEeCCCCHHHHHHHHHHHH
Confidence 54 6668888888888887664
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.98 E-value=6e-10 Score=107.81 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=79.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
|++|+|+||||||++++.+++.+... .+.... ....+.. ..... ...+ ........+.+++++|||++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l 114 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA-SDERGID--VVRHK-IKEF-ARTAPIGGAPFKIIFLDEADAL 114 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET-TCTTCHH--HHHHH-HHHH-HTSCCSTTCSCEEEEEETGGGS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc-ccccChH--HHHHH-HHHH-hcccCCCccCceEEEEeChhhc
Confidence 79999999999999999998864211 111000 0000000 00000 0000 0000111245689999999999
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
.+..+..|+..++.. +..+.+|+++|... .+.+++.+||. .+....++.++-
T Consensus 115 ~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~-------------~~~~~l~~r~~--~i~~~~~~~~~~ 166 (226)
T 2chg_A 115 TADAQAALRRTMEMY-------------SKSCRFILSCNYVS-------------RIIEPIQSRCA--VFRFKPVPKEAM 166 (226)
T ss_dssp CHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE--EEECCCCCHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-------------hcCHHHHHhCc--eeecCCCCHHHH
Confidence 999999999998762 34567888888652 47899999995 455566666655
Q ss_pred HHHHHHHH
Q psy11213 526 LKLAQHIT 533 (621)
Q Consensus 526 ~~ia~~il 533 (621)
..+..+.+
T Consensus 167 ~~~l~~~~ 174 (226)
T 2chg_A 167 KKRLLEIC 174 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.98 E-value=1.4e-09 Score=112.96 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=83.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC-hhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP-DAD 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~-~~~ 449 (621)
.+|+.||||||||++++++++.+...++.... +..+. ...++. -.++. ...-.....++++|||++.+. .+.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~--~~~~~--~~i~~~-~~~~~--~~~~~~~~~~vliiDEi~~l~~~~~ 122 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNG--SDCKI--DFVRGP-LTNFA--SAASFDGRQKVIVIDEFDRSGLAES 122 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEET--TTCCH--HHHHTH-HHHHH--HBCCCSSCEEEEEEESCCCGGGHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc--cccCH--HHHHHH-HHHHH--hhcccCCCCeEEEEECCcccCcHHH
Confidence 45666779999999999999987544432211 11110 000000 00000 000011256899999999999 899
Q ss_pred hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHHHHH
Q psy11213 450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLA 529 (621)
Q Consensus 450 ~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~~ia 529 (621)
++.|+..|+.. +..+.+|+|+|+.. .++++|.|||. .+....|+.++..++.
T Consensus 123 ~~~L~~~le~~-------------~~~~~iI~~~n~~~-------------~l~~~l~sR~~--~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 123 QRHLRSFMEAY-------------SSNCSIIITANNID-------------GIIKPLQSRCR--VITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHHHHHHHHHH-------------GGGCEEEEEESSGG-------------GSCTTHHHHSE--EEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccCHHHHhhCc--EEEeCCCCHHHHHHHH
Confidence 99999999863 34578899999863 58899999994 4667788877766665
Q ss_pred HHHH
Q psy11213 530 QHIT 533 (621)
Q Consensus 530 ~~il 533 (621)
+.++
T Consensus 175 ~~~~ 178 (324)
T 3u61_B 175 KQMI 178 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.96 E-value=5.8e-10 Score=115.19 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=84.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCCCCh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDKLPD 447 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk~~~ 447 (621)
++||+||||||||++++++++.+....+.... ..+.... ... +.. ...+.+-.| ..+|++|||+|.+..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~----~~l~~~~-~g~-~~~--~~~~~f~~a~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISIKG----PELLTMW-FGE-SEA--NVREIFDKARQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEECH----HHHHHHH-HTT-CTT--HHHHHHHHHHHTCSEEEEECSTTHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh----HHHHhhh-cCc-hHH--HHHHHHHHHHhcCCeEEEEEChHHHhh
Confidence 79999999999999999999987644432110 0010000 000 000 000111112 247999999997654
Q ss_pred h--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 448 A--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 448 ~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
. ..+.|+..|+.- .-+.++.||||+|... .|++++++ |||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~lL~~l~~~-----------~~~~~v~vi~atn~~~-------------~ld~al~r~gRf~ 178 (301)
T 3cf0_A 123 ARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVFIIGATNRPD-------------IIDPAILRPGRLD 178 (301)
T ss_dssp HHTTTTCCSSCSCCHHHHHHHHHHHSS-----------CTTSSEEEEEEESCGG-------------GSCGGGGSTTSSC
T ss_pred ccCCCcCCcchHHHHHHHHHHHHhhcc-----------cCCCCEEEEEecCCcc-------------ccChHHhcCCccc
Confidence 3 246677777631 1135689999999863 58899999 998
Q ss_pred EEEEecCCCChHHHHHHHHHHHhh
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il~~ 535 (621)
..+..+.|+.+...+|.++.+..
T Consensus 179 -~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 179 -QLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp -EEEECCCCCHHHHHHHHHHHHTT
T ss_pred -eEEecCCcCHHHHHHHHHHHHcc
Confidence 45666889999888888887753
No 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.94 E-value=1.8e-09 Score=118.08 Aligned_cols=128 Identities=26% Similarity=0.276 Sum_probs=81.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCc--cccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSS--GVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s--~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
++||+||||||||+|+++++..+...++.. +.... ..|. +.-. ..+.+..| ..+|+||||+|.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~----------~~~~-~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGV----------GAAR-VRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTH----------HHHH-HHHHHHHHHHTCSEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcc----------cHHH-HHHHHHHHHhcCCCEEEEechhh
Confidence 699999999999999999999865544321 11100 0010 0000 00112222 246999999999
Q ss_pred CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+... .++.|+..|+.- .-+.++.||||+|... .|++++++
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTn~~~-------------~Ld~allR~g 175 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGIIVMAATNRPD-------------ILDPALLRPG 175 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHHHHHS-----------CGGGTEEEEEEESCGG-------------GSCGGGGSTT
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCEEEEEecCChh-------------hhchhhcccC
Confidence 7543 235566666521 0134578999999863 47889987
Q ss_pred cccEEEEecCCCChHHHHHHHHHHHh
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il~ 534 (621)
|||. .+.++.|+.+...+|.++.+.
T Consensus 176 RFd~-~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 176 RFDK-KIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp SSCE-EEECCCCCHHHHHHHHHHHHT
T ss_pred ccee-EeecCCCCHHHHHHHHHHHHH
Confidence 9995 455678998888888776553
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=3.7e-09 Score=110.67 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=89.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCcc-ccceEEEeecCcccceeee---------ccceeecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSG-VGLTAAVMKDPITNEMVLE---------GGALVLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~-~gLta~~~~~~~~g~~~l~---------~GalvlAd~gi 436 (621)
|+||+||||||||++++.+++.+... ........+. .|.. ..++. ...+... .+....++.+|
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS--IVREK-VKNFARLTVSKPSKHDLENYPCPPYKI 136 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH--HHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH--HHHHH-HHHHhhhcccccchhhcccCCCCCceE
Confidence 79999999999999999999885321 0010111111 0000 00000 0000000 00111245679
Q ss_pred eEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEe
Q psy11213 437 CCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLI 516 (621)
Q Consensus 437 ~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~ 516 (621)
++|||++.+.+..++.|+++|++. +..+.+|.++|... .+.+++.+||. .+.
T Consensus 137 liiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sR~~--~i~ 188 (353)
T 1sxj_D 137 IILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVT-------------RIIDPLASQCS--KFR 188 (353)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHHSE--EEE
T ss_pred EEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchh-------------hCcchhhccCc--eEE
Confidence 999999999999999999999863 23455666777552 48899999995 445
Q ss_pred cCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 517 QDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 517 ~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
...++.++...+..+++... ...++.+.+..+..++.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQE---------NVKCDDGVLERILDISA 225 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTT---------TCCCCHHHHHHHHHHTS
T ss_pred eCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC
Confidence 56666666666666554311 12356666666555543
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.92 E-value=6.8e-09 Score=120.62 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=106.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeec----cceeecCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEG----GALVLADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~----GalvlAd~gi~~IDEidk~ 445 (621)
|+||+||||||||++++.+++.+.+...-. ..+..-..+... ....|++.-.- +.+..+.++|+||| .
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g---~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~ 275 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A 275 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----C
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---ccccchHHHHHHHHHHHHHhcCCEEEEEc----C
Confidence 999999999999999999999863211000 000000000000 00012221110 11112357899999 4
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDND 525 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d 525 (621)
..+.++.|+.+|+.+ .+.+|+|+|+.. +...+.++++|.+||. .+.++.|+.+..
T Consensus 276 ~~~~~~~L~~~l~~~---------------~v~~I~at~~~~--------~~~~~~~d~al~rRf~--~i~v~~p~~~~~ 330 (758)
T 3pxi_A 276 AIDASNILKPSLARG---------------ELQCIGATTLDE--------YRKYIEKDAALERRFQ--PIQVDQPSVDES 330 (758)
T ss_dssp --------CCCTTSS---------------SCEEEEECCTTT--------THHHHTTCSHHHHSEE--EEECCCCCHHHH
T ss_pred chhHHHHHHHHHhcC---------------CEEEEeCCChHH--------HHHHhhccHHHHhhCc--EEEeCCCCHHHH
Confidence 445667787877743 367899999873 3344578999999994 477889999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy11213 526 LKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELR 584 (621)
Q Consensus 526 ~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR 584 (621)
..|.+++...+... ....++.+.+.....++.++ ...+++.+.+.+.......+
T Consensus 331 ~~il~~~~~~~~~~-----~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 331 IQILQGLRDRYEAH-----HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHTTTTSGGG-----SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence 99988765432211 22357889999999988876 56778888888777654444
No 60
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.87 E-value=4.5e-10 Score=114.01 Aligned_cols=123 Identities=10% Similarity=0.111 Sum_probs=65.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeecCCCeeEecCCCCC--
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLADQGICCIDEFDKL-- 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlAd~gi~~IDEidk~-- 445 (621)
.++||+||||||||++++++++......+...... .+.+..... ..+. ..++ ....+.+++++|||++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~-~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETA-KCQAMKKIFD--DAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHH-HHHHHHHHHH--HHHTSSEEEEEECCHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHH-HHHHHHHHHH--HHHhcCCcEEEEEChhhhhc
Confidence 38999999999999999999998554332211100 011100000 0000 0000 001134689999999987
Q ss_pred ----ChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCH-hHhccccEEEEec
Q psy11213 446 ----PDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPA-ALLSRFDLLWLIQ 517 (621)
Q Consensus 446 ----~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~-aLlsRFDli~~~~ 517 (621)
.+..+..+++++... -+.....+.++.||+|+|... .+++ .+.+||+..+.+.
T Consensus 139 ~~~~~~~~~~~~l~~L~~~------~~~~~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 139 YVPIGPRFSNLVLQALLVL------LKKAPPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp CBTTTTBCCHHHHHHHHHH------TTCCCSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEECC
T ss_pred cCCCChhHHHHHHHHHHHH------hcCccCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcCC
Confidence 333333444443321 000111244578999999762 2344 5789998766553
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.86 E-value=2.9e-08 Score=97.56 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=97.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~ 445 (621)
-+++|+||||||||++++.+++.+... .+...... . +.... .+. .+...++++|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-----~-----~~~~~--~~~----~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH-----A-----SISTA--LLE----GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG-----G-----GSCGG--GGT----TGGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH-----H-----HHHHH--HHH----hccCCCEEEEeccccc
Confidence 389999999999999999999875431 12111000 0 00000 000 1245689999999999
Q ss_pred Chhh--hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc-EEEEecCCCCh
Q psy11213 446 PDAD--RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD-LLWLIQDKPDR 522 (621)
Q Consensus 446 ~~~~--~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD-li~~~~d~~d~ 522 (621)
.... +..|+..++... . .....+|.++|.....+ ..+.+++.+||+ -..+....++.
T Consensus 117 ~~~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~---------~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 117 AGHPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEA---------GFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp TTCHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTT---------TCCCHHHHHHHHHSEEEECCCCCG
T ss_pred cCCHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHH---------HHhhhhhhhHhhcCceEEeCCCCH
Confidence 8766 778888876421 0 01123566666432211 124589999994 13344566666
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q psy11213 523 DNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLL 602 (621)
Q Consensus 523 ~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R~le 602 (621)
++..+++.+.+.. .+..+++++.+.|.+.+ .-++|.+.
T Consensus 177 ~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~l~~~~--------------~g~~r~l~ 214 (242)
T 3bos_A 177 DEKLAALQRRAAM----------------------------RGLQLPEDVGRFLLNRM--------------ARDLRTLF 214 (242)
T ss_dssp GGHHHHHHHHHHH----------------------------TTCCCCHHHHHHHHHHT--------------TTCHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------cCCCCCHHHHHHHHHHc--------------cCCHHHHH
Confidence 6666665554321 12456666666655421 12467777
Q ss_pred HHHHHHHHHHHhcC
Q psy11213 603 AILRLSTALARLRL 616 (621)
Q Consensus 603 slirla~A~Akl~l 616 (621)
.+++.+.+.|....
T Consensus 215 ~~l~~~~~~a~~~~ 228 (242)
T 3bos_A 215 DVLDRLDKASMVHQ 228 (242)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 77776666664443
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.86 E-value=1.4e-08 Score=104.54 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
|+||+||||||||++++.+++.+.. .+........+.+.. ++. -..+. ...++..+..++++|||++.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~-~~~~~~~~~~~vliiDe~~~ 113 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV----RHK-IKEFA-RTAPIGGAPFKIIFLDEADA 113 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS----SHH-HHHHH-HSCCSSSCCCEEEEEETGGG
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH----HHH-HHHHH-hcCCCCCCCceEEEEeCCCc
Confidence 7999999999999999999987411 111111110000000 000 00000 01111124568999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
++.+.++.|+..|++ .+..+.+|+++|... .+.+++.+||. .+....++.++
T Consensus 114 l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~-------------~l~~~l~sr~~--~i~~~~~~~~~ 165 (319)
T 2chq_A 114 LTADAQAALRRTMEM-------------YSKSCRFILSCNYVS-------------RIIEPIQSRCA--VFRFKPVPKEA 165 (319)
T ss_dssp SCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG-------------GSCHHHHTTCE--EEECCCCCHHH
T ss_pred CCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh-------------hcchHHHhhCe--EEEecCCCHHH
Confidence 999999999999986 245677888888652 57899999994 55566677666
Q ss_pred HHHHHHHHH
Q psy11213 525 DLKLAQHIT 533 (621)
Q Consensus 525 d~~ia~~il 533 (621)
-..+..+++
T Consensus 166 ~~~~l~~~~ 174 (319)
T 2chq_A 166 MKKRLLEIC 174 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 63
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.84 E-value=5.6e-09 Score=114.90 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=77.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe-cCCCCccccceEEEeecCcccceeee-ccceeec---CCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT-TGRGSSGVGLTAAVMKDPITNEMVLE-GGALVLA---DQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~-~g~~~s~~gLta~~~~~~~~g~~~l~-~GalvlA---d~gi~~IDEidk~ 445 (621)
++||+||||||||+|+++++..+....+. ++..... ...|...-. ...+-.| ..++++|||+|.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~----------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l 135 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE----------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS----------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH----------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 59999999999999999999987644332 2211100 001110000 0111112 2379999999886
Q ss_pred Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
... ..+.++..|+... .+....++||+|... .|++++++ |
T Consensus 136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-------------~LD~aLlr~gR 191 (499)
T 2dhr_A 136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 191 (499)
T ss_dssp CCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-------------GSCTTTSSTTS
T ss_pred HHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-------------hcCcccccccc
Confidence 431 1234555554321 133478899999762 38899998 8
Q ss_pred ccEEEEecCCCChHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~i 532 (621)
||. .+.++.|+.+...+|.++.
T Consensus 192 fdr-~i~i~~Pd~~~R~~IL~~~ 213 (499)
T 2dhr_A 192 FDR-QIAIDAPDVKGREQILRIH 213 (499)
T ss_dssp SCC-EEECCCCCHHHHHHHHHHT
T ss_pred cce-EEecCCCCHHHHHHHHHHH
Confidence 995 5666889988877776543
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=7.6e-09 Score=106.92 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=89.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc-----E-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS-----Q-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
|+||+||||||||++++.+++.+... . ...+.. ..|.. ..++ ...++ ...+.+..+.+++++|||++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~--~~~~~--~~~~-~~~~~-~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGIN--VIRE-KVKEF-ARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC--HHHHH--TTHH-HHHHH-HHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc--cCchH--HHHH-HHHHH-HhhCCcCCCCCeEEEEeCCCc
Confidence 79999999999999999999874211 1 111100 00000 0000 00011 012223235678999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
++++.++.|+..|++. +..+.+|.++|... .+.+++.+||. .+....++.++
T Consensus 122 l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~-------------~l~~~l~sr~~--~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA--IFRFRPLRDED 173 (327)
T ss_dssp SCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHTEE--EEECCCCCHHH
T ss_pred CCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc-------------ccCHHHHhhCc--EEEecCCCHHH
Confidence 9999999999999863 33456777777652 47899999995 44555566665
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 525 DLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 525 d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
-..+..+++... ...++.+.+.....++
T Consensus 174 ~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 174 IAKRLRYIAENE---------GLELTEEGLQAILYIA 201 (327)
T ss_dssp HHHHHHHHHHTT---------TCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---------CCCCCHHHHHHHHHHC
Confidence 555555544311 1125555555555544
No 65
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.81 E-value=3.4e-09 Score=122.26 Aligned_cols=129 Identities=24% Similarity=0.273 Sum_probs=83.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccc--eeeeccceeec---CCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNE--MVLEGGALVLA---DQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~--~~l~~GalvlA---d~gi~~IDEidk~ 445 (621)
+|||+||||||||+|+|++|+.+....+..... .+. ....|+ ..++ ..+-.| ..+|+||||+|.+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~----~l~-----sk~~gese~~lr-~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGP----EIM-----SKLAGESESNLR-KAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHH----HHH-----SSCTTHHHHHHH-HHHHHHTTSCSEEEEEESGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhH----Hhh-----cccchHHHHHHH-HHHHHHHHcCCeEEEEehhccc
Confidence 799999999999999999999876655432100 000 000111 0000 011112 2579999999987
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL 512 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl 512 (621)
.+. ..+.|+..|+.-. -+.++.||||+|... .|+++|++ |||
T Consensus 310 ~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd- 364 (806)
T 3cf2_A 310 APKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFD- 364 (806)
T ss_dssp CCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTT-------------TSCTTTTSTTSSC-
T ss_pred ccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChh-------------hcCHHHhCCcccc-
Confidence 542 1234555554310 123578999999774 58999998 999
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~ 534 (621)
..+.++.|+.....+|.+..+.
T Consensus 365 ~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 365 REVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEECCCCCHHHHHHHHHHTCS
T ss_pred eEEecCCCCHHHHHHHHHHHhc
Confidence 5566789999999998876543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.80 E-value=6.8e-09 Score=120.57 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=106.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc----------EEecCCCCccccceEEEeecCccccee--ee--ccceeecCCCe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS----------QYTTGRGSSGVGLTAAVMKDPITNEMV--LE--GGALVLADQGI 436 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----------~~~~g~~~s~~gLta~~~~~~~~g~~~--l~--~GalvlAd~gi 436 (621)
|+||+|+||||||++++.+++.+... ++....+. +.+. ....|++. ++ -..+..+.++|
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~----l~~~---~~~~g~~e~~l~~~~~~~~~~~~~i 281 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----LLAG---TKYRGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------CC---CCCSSCHHHHHHHHHHHHSSSSCEE
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH----Hhcc---ccccchHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999875321 11111000 1100 00112111 00 00111234689
Q ss_pred eEecCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 437 CCIDEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 437 ~~IDEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
+||||++.+. .+..+.|..+++. .++.+|+|+|+.. +...+.++++|.
T Consensus 282 L~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~---------------~~~~~I~at~~~~--------~~~~~~~d~aL~ 338 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---------------GKIRVIGSTTYQE--------FSNIFEKDRALA 338 (758)
T ss_dssp EEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS---------------CCCEEEEEECHHH--------HHCCCCCTTSSG
T ss_pred EEEechHHHhhcCCCCcchHHHHHHHHHHHhC---------------CCeEEEEEeCchH--------HhhhhhcCHHHH
Confidence 9999999982 2223344455543 2467888998752 223356789999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYT 581 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~ 581 (621)
+||+ .+.++.|+.+....+.+.+....... ....++.+.+......+..+ ...+++.+.+.+.+...
T Consensus 339 ~Rf~--~i~v~~p~~~e~~~il~~l~~~~~~~-----~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 339 RRFQ--KIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp GGEE--EEECCCCCHHHHHHHHHHHHHHHHHH-----HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred hCce--EEEcCCCCHHHHHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHH
Confidence 9996 47788999998888888776532110 12346778888888777664 56678888877765543
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.78 E-value=3.5e-08 Score=96.31 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=79.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC------------CccccceEEEeecCcc--cc--e--eeec-c-cee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG------------SSGVGLTAAVMKDPIT--NE--M--VLEG-G-ALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~------------~s~~gLta~~~~~~~~--g~--~--~l~~-G-alv 430 (621)
.++|+|+||+|||++++.+++.+.......... .....+.. .+... +. . .++. . ...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 123 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE---IDAASRTKVEDTRDLLDNVQYAPA 123 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE---EETTCGGGHHHHHHHHHSCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE---ecCcccccHHHHHHHHHHhhhchh
Confidence 689999999999999999988754321100000 00000110 00000 00 0 0000 0 001
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
.....+++|||++.+.+..+..|+..|++. +..+.+|+++|... .+.+++++|+
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~-------------~~~~~l~~r~ 177 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC 177 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChH-------------hCCHHHHHHh
Confidence 123579999999999999999999998752 34567788887542 4788999998
Q ss_pred cEEEEecCCCChHHHHHHHHHHH
Q psy11213 511 DLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 511 Dli~~~~d~~d~~~d~~ia~~il 533 (621)
..+....++.++-.++..+.+
T Consensus 178 --~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 178 --LQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp --EEEECCCCCHHHHHHHHHHHH
T ss_pred --hhccCCCCCHHHHHHHHHHHH
Confidence 455566677766666665554
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.75 E-value=1.1e-08 Score=102.54 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=73.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeecc-ceeec---CCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGG-ALVLA---DQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~G-alvlA---d~gi~~IDEidk~ 445 (621)
+++|+||||||||+|+++++..+....+.. +.. +. +...+...-.-+ .+-.+ ...++++||++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----FV-----EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----HH-----HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH-----HH-----HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 599999999999999999999865333221 100 00 000010000000 01111 1368999999765
Q ss_pred Chh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 446 PDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 446 ~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
... ..+.++..|+.+. .+....++|++|... .|++++++ |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 176 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 176 (254)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence 211 1123444443211 122356788888652 48899998 9
Q ss_pred ccEEEEecCCCChHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il 533 (621)
||. .+..+.|+.+...+|.+...
T Consensus 177 f~~-~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 177 FDR-QIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp SCE-EEECCSCCHHHHHHHHHHHH
T ss_pred CCe-EEeeCCcCHHHHHHHHHHHH
Confidence 996 56668889888888776543
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.74 E-value=1.4e-08 Score=119.56 Aligned_cols=177 Identities=18% Similarity=0.225 Sum_probs=100.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----------cEEecCCCCccccceEEEeecCcccceeee-ccceee---c-CCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----------SQYTTGRGSSGVGLTAAVMKDPITNEMVLE-GGALVL---A-DQG 435 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----------~~~~~g~~~s~~gLta~~~~~~~~g~~~l~-~Galvl---A-d~g 435 (621)
|+||+|+||||||++++.+++.+.. .++....+ .+.+.. ...|++.-. ...+-. . ...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~~ 265 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLAGA---KYRGEFEERLKAVIQEVVQSQGEV 265 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------CHHHHHHHHHHHHHTTCSSE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----HhhccC---ccchHHHHHHHHHHHHHHhcCCCe
Confidence 8999999999999999999987532 11111100 011100 001111100 000000 1 235
Q ss_pred eeEecCCCCCC--------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 436 ICCIDEFDKLP--------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 436 i~~IDEidk~~--------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
|+||||++.+. .+..+.|..+|+.+ ++.+|+|+|+.. ... +.++++|.
T Consensus 266 iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---------------~i~~I~at~~~~--------~~~-~~~d~aL~ 321 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---------------ELRLIGATTLDE--------YRE-IEKDPALE 321 (854)
T ss_dssp EEEECCC-------------------HHHHHTT---------------CCCEEEEECHHH--------HHH-HTTCTTTC
T ss_pred EEEEecHHHHhccCCccchHHHHHHHHHHHhCC---------------CeEEEEecCchH--------Hhh-hccCHHHH
Confidence 99999999986 33344566666432 356888888752 222 56789999
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGK--NPTVPSSLTEHIVKAYTELRK 585 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~--~p~ls~~a~~~l~~~y~~lR~ 585 (621)
+||+. +.++.|+.+....+.+.++..+... ....++.+.+...+.++..+ ...+++.+.+.+.+.-...|.
T Consensus 322 rRf~~--i~l~~p~~~e~~~iL~~~~~~~~~~-----~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 322 RRFQP--VYVDEPTVEETISILRGLKEKYEVH-----HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp SCCCC--EEECCCCHHHHHHHHHHHHHHHHHH-----TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred hCCce--EEeCCCCHHHHHHHHHhhhhhhhhh-----cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 99985 5668889988888888776543211 12357788888888888765 455677787777666554443
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.74 E-value=2.6e-09 Score=123.25 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=76.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCC---CccccceEEEeecCcccceeeeccceeec---CCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRG---SSGVGLTAAVMKDPITNEMVLEGGALVLA---DQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~---~s~~gLta~~~~~~~~g~~~l~~GalvlA---d~gi~~IDEidk 444 (621)
.+||+||||||||.+++++|..+....+..... +..+|-+...++ -.+-.| ..+|+||||+|.
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr-----------~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR-----------EIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHH-----------HHHHHHHTTCSEEEECSCGGG
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHH-----------HHHHHHHHcCCceeechhhhH
Confidence 799999999999999999999977665532110 011111110000 011112 358999999998
Q ss_pred CChh--------------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--
Q psy11213 445 LPDA--------------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS-- 508 (621)
Q Consensus 445 ~~~~--------------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls-- 508 (621)
+-.. ..+.|+..|+.- . -..++.||||+|... .|++|+++
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL~~mdg~---------~--~~~~V~vi~aTN~p~-------------~lD~AllRpg 637 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGM---------S--TKKNVFIIGATNRPD-------------IIDPAILRPG 637 (806)
T ss_dssp CC--------------CHHHHHHHHHHHSS---------C--SSSSEEEECC-CCSS-------------SSCHHHHSTT
T ss_pred HhhccCCCCCCCchHHHHHHHHHHHHHhCC---------C--CCCCEEEEEeCCCch-------------hCCHhHcCCC
Confidence 6432 234566666531 1 134578999999874 69999999
Q ss_pred cccEEEEecCCCChHHHHHHHHHHH
Q psy11213 509 RFDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 509 RFDli~~~~d~~d~~~d~~ia~~il 533 (621)
|||-.+ .++.|+.+...+|.+..+
T Consensus 638 Rfd~~i-~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 638 RLDQLI-YIPLPDEKSRVAILKANL 661 (806)
T ss_dssp TSCCEE-EC-----CHHHHTTTTTS
T ss_pred cceEEE-EECCcCHHHHHHHHHHHh
Confidence 999554 568899888887776544
No 71
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.72 E-value=5.2e-08 Score=125.33 Aligned_cols=188 Identities=17% Similarity=0.216 Sum_probs=126.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhccccEEe--cCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLARRSQYT--TGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~--~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
.....+.||+|||||.+++.+|+.+.+.+++ +..+.....+ |. +-.|+. ..|+.+|+||||++.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g~--i~~G~~--~~GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------SR--IFVGLC--QCGAWGCFDEFNRLE 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------HH--HHHHHH--HHTCEEEEETTTSSC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------HH--HHhhHh--hcCcEEEehhhhcCC
Confidence 3456799999999999999999999887654 3332221100 11 112322 247889999999999
Q ss_pred hhhhhhhHhhhc---------ceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEec
Q psy11213 447 DADRTAIHEVME---------QQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQ 517 (621)
Q Consensus 447 ~~~~~~L~eame---------~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~ 517 (621)
.+..+.+.+.+. ..++.+. .|....++..|.|++|+||. +.+..+||++|.+|| ..+..
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~-~G~~i~l~~~~~vfiTmNpg---------Y~gr~eLP~nLk~lF--r~v~m 737 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELL-GGKNISLHQDMGIFVTMNPG---------YAGRSNLPDNLKKLF--RSMAM 737 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCC---------GGGCCCSCHHHHTTE--EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEec-CCCEEeecCCeEEEEEeCCC---------ccCcccChHHHHhhc--EEEEE
Confidence 999998877665 3455552 27788999999999999996 455568999999999 67777
Q ss_pred CCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccC
Q psy11213 518 DKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTS 597 (621)
Q Consensus 518 d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t 597 (621)
..||.+...+|.-.- . +-.-....+.+++..|.-.+..-.. ......+
T Consensus 738 ~~Pd~~~i~ei~L~s-----------------------------~--Gf~~a~~La~k~~~~~~l~~e~LS~-Q~HYDfG 785 (3245)
T 3vkg_A 738 IKPDREMIAQVMLYS-----------------------------Q--GFKTAEVLAGKIVPLFKLCQEQLSA-QSHYDFG 785 (3245)
T ss_dssp CSCCHHHHHHHHHHT-----------------------------T--TCSCHHHHHHHHHHHHHHHHHSSCC-CTTCCCS
T ss_pred eCCCHHHHHHHHHHH-----------------------------c--ccchHHHHHHHHHHHHHHHHHHhCC-CCCCCCC
Confidence 888876554443211 1 0111245667778888766654222 2334478
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11213 598 ARNLLAILRLSTALARL 614 (621)
Q Consensus 598 ~R~leslirla~A~Akl 614 (621)
.|++.++++.|-+.-|-
T Consensus 786 LRalKsVL~~AG~lkr~ 802 (3245)
T 3vkg_A 786 LRALKSVLVSAGGIKRK 802 (3245)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 89999999988665443
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.72 E-value=1.8e-08 Score=109.54 Aligned_cols=176 Identities=16% Similarity=0.232 Sum_probs=101.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc------EEecCCCCccccceEEEeecCcccceeeeccceeec-CCCeeEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS------QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLA-DQGICCIDEFD 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~------~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlA-d~gi~~IDEid 443 (621)
+++|+|+||+|||+|++++++.+.+. +|.+...... .+.... .......+ .-... ...+++|||++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~-~~~~~~~~-----~~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEF-----REKYRKKVDILLIDDVQ 204 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHH-HTTCHHHH-----HHHHTTTCSEEEEECGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HcccHHHH-----HHHhcCCCCEEEEeCcc
Confidence 89999999999999999999875321 2221110000 000000 00000000 00012 56899999999
Q ss_pred CCCh--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCC
Q psy11213 444 KLPD--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDK 519 (621)
Q Consensus 444 k~~~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~ 519 (621)
.+.. ..+..++..|+.-. ..| ...|+++.||.. +-..+.++|++||+ ++ +....
T Consensus 205 ~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~----------~l~~l~~~L~sR~~~g~~-i~l~~ 262 (440)
T 2z4s_A 205 FLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQ----------KLSEFQDRLVSRFQMGLV-AKLEP 262 (440)
T ss_dssp GGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGG----------GCSSCCHHHHHHHHSSBC-CBCCC
T ss_pred cccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHH----------HHHHHHHHHHhhccCCeE-EEeCC
Confidence 9886 56777877775421 011 134455555432 11248899999995 33 34466
Q ss_pred CChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccCHH
Q psy11213 520 PDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSAR 599 (621)
Q Consensus 520 ~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar~~~p~ls~~a~~~l~~~y~~lR~~~~~~~~~~~~t~R 599 (621)
|+.+....+.++.+. ..+..+++++.++|.... .-++|
T Consensus 263 p~~e~r~~iL~~~~~----------------------------~~~~~i~~e~l~~la~~~--------------~gn~R 300 (440)
T 2z4s_A 263 PDEETRKSIARKMLE----------------------------IEHGELPEEVLNFVAENV--------------DDNLR 300 (440)
T ss_dssp CCHHHHHHHHHHHHH----------------------------HHTCCCCTTHHHHHHHHC--------------CSCHH
T ss_pred CCHHHHHHHHHHHHH----------------------------HcCCCCCHHHHHHHHHhc--------------CCCHH
Confidence 666665555544332 113567777777766421 13689
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy11213 600 NLLAILRLSTALARLRLC 617 (621)
Q Consensus 600 ~leslirla~A~Akl~lr 617 (621)
.++.+++.+.+.|....+
T Consensus 301 ~l~~~L~~~~~~a~~~~~ 318 (440)
T 2z4s_A 301 RLRGAIIKLLVYKETTGK 318 (440)
T ss_dssp HHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999888888877654
No 73
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.71 E-value=1.8e-08 Score=104.75 Aligned_cols=134 Identities=18% Similarity=0.259 Sum_probs=74.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc----EEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS----QYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~----~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
+++|+||||||||+|++++++.+.+. ++.+..... ..+.... .......+ . -...+.++++|||++.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~~~~~~~--~---~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-QAMVEHL-KKGTINEF--R---NMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-HHHHHHH-HHTCHHHH--H---HHHHTCSEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHH-HcCcHHHH--H---HHhcCCCEEEEcCccccc
Confidence 89999999999999999999876321 222110000 0000000 00000000 0 001347899999999988
Q ss_pred h--hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhcccc--EEEEecCCCCh
Q psy11213 447 D--ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD--LLWLIQDKPDR 522 (621)
Q Consensus 447 ~--~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFD--li~~~~d~~d~ 522 (621)
. ..+..++..++... ..| ...|+++.|+.. +-..+.++|++||+ +++.+ .. +.
T Consensus 112 ~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~----------~l~~l~~~L~sR~~~~~~i~l-~~-~~ 168 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ----------KLDGVSDRLVSRFEGGILVEI-EL-DN 168 (324)
T ss_dssp TCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG----------GCTTSCHHHHHHHHTSEEEEC-CC-CH
T ss_pred CChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH----------HHHHhhhHhhhcccCceEEEe-CC-CH
Confidence 6 55667777665321 011 124555555532 11258899999996 45444 44 77
Q ss_pred HHHHHHHHHHHh
Q psy11213 523 DNDLKLAQHITY 534 (621)
Q Consensus 523 ~~d~~ia~~il~ 534 (621)
++...+.++.+.
T Consensus 169 ~e~~~il~~~~~ 180 (324)
T 1l8q_A 169 KTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 74
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.68 E-value=2.5e-08 Score=101.47 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=73.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeeccce-eec---CCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLA---DQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlA---d~gi~~IDEidk~ 445 (621)
+++|+||||||||+|+++++..++...+.. +.. + .+...+...-.-+.+ -.+ ..+++++||++.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD-----F-----VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-----H-----HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH-----H-----HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence 599999999999999999999875433221 100 0 000001000000000 011 2368999999764
Q ss_pred Ch-----------hhhhh---hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 446 PD-----------ADRTA---IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 446 ~~-----------~~~~~---L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
.. ..... ++..|+.+ . .+....++|++|... .|++++++ |
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ll~~lsgg--------~---~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 200 (278)
T 1iy2_A 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGF--------E---KDTAIVVMAATNRPD-------------ILDPALLRPGR 200 (278)
T ss_dssp HCC--------CHHHHHHHHHHHHHHTTC--------C---TTCCEEEEEEESCTT-------------SSCHHHHSTTS
T ss_pred hcccccccCCcchHHHHHHHHHHHHHhCC--------C---CCCCEEEEEecCCch-------------hCCHhHcCCCc
Confidence 21 11222 23333211 0 122357788888763 48899998 9
Q ss_pred ccEEEEecCCCChHHHHHHHHHHH
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il 533 (621)
||. .+..+.|+.+...+|.++..
T Consensus 201 f~~-~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 201 FDR-QIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp SCC-EEECCCCCHHHHHHHHHHHH
T ss_pred CCe-EEEeCCcCHHHHHHHHHHHH
Confidence 996 56668888888888777543
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.67 E-value=7.2e-08 Score=98.17 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=78.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE-ecCCCCccccceEEEeecCcccceeeeccceee----cCCCeeEecCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY-TTGRGSSGVGLTAAVMKDPITNEMVLEGGALVL----ADQGICCIDEFDKL 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~-~~g~~~s~~gLta~~~~~~~~g~~~l~~Galvl----Ad~gi~~IDEidk~ 445 (621)
+++|+||||||||+|+++++..++...+ ..|..... ...|+....-+.+.. ....++++||++.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~----------~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN----------MYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL 115 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS----------STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh----------hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhh
Confidence 4999999999999999999998755332 22221110 001110000011110 12468999999986
Q ss_pred Chh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--cccE
Q psy11213 446 PDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFDL 512 (621)
Q Consensus 446 ~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFDl 512 (621)
... ..+.++..|+.+. -.....++|++|... .|++++++ |||
T Consensus 116 ~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ia~tn~p~-------------~LD~al~r~gRfd- 170 (274)
T 2x8a_A 116 CPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFIMAATNRPD-------------IIDPAILRPGRLD- 170 (274)
T ss_dssp CC---------CTTHHHHHHHHHHTCC-----------STTCEEEEEEESCGG-------------GSCHHHHSTTSSC-
T ss_pred hcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEEEeecCChh-------------hCCHhhcCcccCC-
Confidence 421 1223333333210 112356788888763 48999998 999
Q ss_pred EEEecCCCChHHHHHHHHHHHh
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITY 534 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~ 534 (621)
..+..+.|+.+...+|.+.++.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHTT
T ss_pred eEEEeCCcCHHHHHHHHHHHHh
Confidence 5566799999999999987764
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.66 E-value=2.3e-09 Score=101.17 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=71.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEee--cCcccceeeeccc----eeecCC-CeeEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMK--DPITNEMVLEGGA----LVLADQ-GICCIDEF 442 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~--~~~~g~~~l~~Ga----lvlAd~-gi~~IDEi 442 (621)
+++|+|+||||||++++.+++.+....+... .+.....+...... ....|.+.-.-.. +..+++ .+++|||+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCH
Confidence 8999999999999999999988643111000 00000000000000 0001111000000 111233 48999999
Q ss_pred CCCCh--------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEE
Q psy11213 443 DKLPD--------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLW 514 (621)
Q Consensus 443 dk~~~--------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~ 514 (621)
+.+.+ .....|...++. .++.+|+++|+.. ......+++++++||+ .
T Consensus 125 ~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~--~ 179 (195)
T 1jbk_A 125 HTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDE--------YRQYIEKDAALERRFQ--K 179 (195)
T ss_dssp GGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHH--------HHHHTTTCHHHHTTEE--E
T ss_pred HHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHH--------HHHHHhcCHHHHHHhc--e
Confidence 99863 335555555543 2467888888652 2233468999999997 3
Q ss_pred EecCCCChHHHHH
Q psy11213 515 LIQDKPDRDNDLK 527 (621)
Q Consensus 515 ~~~d~~d~~~d~~ 527 (621)
+....|+.++..+
T Consensus 180 i~~~~p~~~~~~~ 192 (195)
T 1jbk_A 180 VFVAEPSVEDTIA 192 (195)
T ss_dssp EECCCCCHHHHHT
T ss_pred eecCCCCHHHHHH
Confidence 5567777665443
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.66 E-value=4.5e-08 Score=103.33 Aligned_cols=167 Identities=18% Similarity=0.135 Sum_probs=91.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc---------c-EEecCCC-CccccceEEEee-----cCcccceeee-ccce--ee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR---------S-QYTTGRG-SSGVGLTAAVMK-----DPITNEMVLE-GGAL--VL 431 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr---------~-~~~~g~~-~s~~gLta~~~~-----~~~~g~~~l~-~Gal--vl 431 (621)
+++|+||||||||++++.+++.+.+ . ++..... .+...+...... .+..|.-.-+ -..+ .+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987632 1 2222111 110000000000 0000000000 0000 01
Q ss_pred cCCC---eeEecCCCCCChh--hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 432 ADQG---ICCIDEFDKLPDA--DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 432 Ad~g---i~~IDEidk~~~~--~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
...| +++|||++.+... .+..|...++...- ...+.++.+|+++|... .. ..+.+++
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~--------~~~~~~~~~I~~t~~~~--------~~--~~l~~~l 187 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE--------LGDRVWVSLVGITNSLG--------FV--ENLEPRV 187 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC--------C-----CEEEEECSCST--------TS--SSSCHHH
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh--------cCCCceEEEEEEECCCc--------hH--hhhCHHH
Confidence 1223 9999999998776 56666655542100 00045678899998752 11 1478999
Q ss_pred hccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 507 LSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 507 lsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
.+||....+..+.++.++-..+..+.+..... ...++.+.+.....++.
T Consensus 188 ~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-------~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 188 KSSLGEVELVFPPYTAPQLRDILETRAEEAFN-------PGVLDPDVVPLCAALAA 236 (387)
T ss_dssp HTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC-------TTTBCSSHHHHHHHHHH
T ss_pred HhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-------CCCCCHHHHHHHHHHHH
Confidence 99998656777888888888888776642111 12455566666666665
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=7.5e-08 Score=100.87 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE----EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~----~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
|+||+||||||||++++.+++.+.... +.....+...|.. ..++. -+.+. +.+....+...|++|||++.|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~--~ir~~-i~~~~-~~~~~~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID--VVRNQ-IKDFA-STRQIFSKGFKLIILDEADAMT 123 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHH--HHHTH-HHHHH-HBCCSSSCSCEEEEETTGGGSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHH--HHHHH-HHHHH-hhcccCCCCceEEEEeCCCCCC
Confidence 799999999999999999999853211 1100000000100 00000 00110 1111122346799999999999
Q ss_pred hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHHHH
Q psy11213 447 DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDL 526 (621)
Q Consensus 447 ~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~d~ 526 (621)
.+.+++|+..||+. +..+.++.++|... .+.+++.||+. . +....++.++..
T Consensus 124 ~~~~~~L~~~le~~-------------~~~~~~il~~n~~~-------------~i~~~i~sR~~-~-~~~~~l~~~~~~ 175 (340)
T 1sxj_C 124 NAAQNALRRVIERY-------------TKNTRFCVLANYAH-------------KLTPALLSQCT-R-FRFQPLPQEAIE 175 (340)
T ss_dssp HHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-E-EECCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC-------------CCCeEEEEEecCcc-------------ccchhHHhhce-e-EeccCCCHHHHH
Confidence 99999999999863 33456667777652 58899999994 3 444556666666
Q ss_pred HHHHHHH
Q psy11213 527 KLAQHIT 533 (621)
Q Consensus 527 ~ia~~il 533 (621)
..+.+++
T Consensus 176 ~~l~~~~ 182 (340)
T 1sxj_C 176 RRIANVL 182 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 79
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.8e-07 Score=96.91 Aligned_cols=144 Identities=9% Similarity=0.017 Sum_probs=84.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc-----------cEEecCCCCccc---------cceEEE-eecCccc--ceeeecc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR-----------SQYTTGRGSSGV---------GLTAAV-MKDPITN--EMVLEGG 427 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----------~~~~~g~~~s~~---------gLta~~-~~~~~~g--~~~l~~G 427 (621)
+++|+|+||||||.+++++++.+.. .++..+...+.. .|.+.. ....... +..+...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999887632 223333321110 010000 0000000 0000000
Q ss_pred ceeecCCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 428 alvlAd~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
.-......|++|||+|.+. .+..|+..++-.. .-++++.||+.+|...- .. ..|++++.
T Consensus 127 ~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~--------~~-~~L~~~v~ 185 (318)
T 3te6_A 127 PKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVT--------IR-EQINIMPS 185 (318)
T ss_dssp CGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCC--------CH-HHHHTCHH
T ss_pred hhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCccc--------ch-hhcchhhh
Confidence 0001123599999999998 5677777664210 12456789999997621 00 12556678
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhh
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYV 535 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~ 535 (621)
|||+...+.....+.++-..|+++-+..
T Consensus 186 SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 186 LKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 9998777788889999999998887764
No 80
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=4.3e-07 Score=95.62 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=88.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec----CCCC--------ccccceEEEeecCccc--ce--eee-ccc-eeec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT----GRGS--------SGVGLTAAVMKDPITN--EM--VLE-GGA-LVLA 432 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~----g~~~--------s~~gLta~~~~~~~~g--~~--~l~-~Ga-lvlA 432 (621)
.+||+|+||||||++++.+++.+....... +.-. ....+.. .......+ .. .++ ... -..+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARG 118 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE-EETTCSCCSSCHHHHHHHTTSCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE-ecccccCCHHHHHHHHHHHhhccccC
Confidence 479999999999999999998754321100 0000 0000110 00000000 00 000 000 0122
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
...|++|||++.++.+.++.|+..+++ .+..+.+|.++|... .+.+++.+|+
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~-------------~l~~~l~sr~-- 170 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQ-------------KLPVTILSRC-- 170 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGG-------------GSCHHHHTTS--
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChH-------------hCcHHHHhhe--
Confidence 356999999999999999999999985 244566777776431 4788999999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
..+....++.++-..+.++.+... ...++.+.+..+..++
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~---------~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEE---------HIAHEPRALQLLARAA 210 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHS
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHC
Confidence 555667777777666666665422 1134555565555544
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.56 E-value=2.8e-09 Score=124.27 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=92.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeecc-ceeec---CCCeeEecCCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG-ALVLA---DQGICCIDEFDKL 445 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~G-alvlA---d~gi~~IDEidk~ 445 (621)
-++||+||||||||+|+++++..+....+.... ..+. +...|+..-.-+ .+-.| ..+|+||||+|.+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~----~~l~-----~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKG----PELL-----TMWFGESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC----SSST-----TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec----hHhh-----hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhh
Confidence 389999999999999999999987544322110 0011 000111000000 01111 2379999999986
Q ss_pred Ch--------------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--c
Q psy11213 446 PD--------------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--R 509 (621)
Q Consensus 446 ~~--------------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--R 509 (621)
.. ...+.|+..|+... -..++.||||+|... .|++++++ |
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~vI~tTN~~~-------------~ld~allrpgR 638 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGR 638 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCBSCG-------------GGSCTTSSGGG
T ss_pred hhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCeEEEEecCCcc-------------cCCHHHhCccc
Confidence 32 22356677776421 124588999999873 58999999 9
Q ss_pred ccEEEEecCCCChHHHHHHHHHHHhhhccCCCCC-----CCCCCCCHHHHHHHHHHHHc
Q psy11213 510 FDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPP-----TELKPIDMSLVRRYIDLCKG 563 (621)
Q Consensus 510 FDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~-----~~~~~i~~~~lr~~i~~ar~ 563 (621)
|| ..+..+.|+.+....|.+..+.......... .....++...++..+..|..
T Consensus 639 f~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~ 696 (806)
T 1ypw_A 639 LD-QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK 696 (806)
T ss_dssp TT-SCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHH
T ss_pred cC-ceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHH
Confidence 98 4455578888888888776543211110000 11234677788888877653
No 82
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=3.4e-07 Score=96.81 Aligned_cols=165 Identities=11% Similarity=0.081 Sum_probs=91.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc-----EEecCCC-CccccceEEEee-----cCccc----ceeeeccceeecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS-----QYTTGRG-SSGVGLTAAVMK-----DPITN----EMVLEGGALVLADQG 435 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~-----~~~~g~~-~s~~gLta~~~~-----~~~~g----~~~l~~GalvlAd~g 435 (621)
+++|+|+||||||++++.+++.+... ++..... .+...+...... .+..+ +..-.-.....+.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999886432 2222111 110000000000 00000 000000000111233
Q ss_pred --eeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 436 --ICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 436 --i~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
+++|||++.++++.+..|..++++.. .. -+.++.+|+++|... +.. .+.+++.+||...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~-----~~~~~~iI~~~~~~~--------~~~--~l~~~~~~r~~~~ 186 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEAD----KL-----GAFRIALVIVGHNDA--------VLN--NLDPSTRGIMGKY 186 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHH----HH-----SSCCEEEEEEESSTH--------HHH--TSCHHHHHHHTTC
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCC----CC-----CcCCEEEEEEECCch--------HHH--HhCHHhhhcCCCc
Confidence 89999999999888899988886521 00 013567888887541 111 3678999999754
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLC 561 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~a 561 (621)
.+....++.++-..+..+.+..... ...++.+.+.....++
T Consensus 187 ~i~~~pl~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILLDRAKAGLA-------EGSYSEDILQMIADIT 227 (389)
T ss_dssp EEECCCCBHHHHHHHHHHHHHHHBC-------TTSSCHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhcC-------CCCCCHHHHHHHHHHH
Confidence 5666677777666666665532110 1235555555555554
No 83
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=1.4e-07 Score=97.05 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc-----cE-EecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR-----SQ-YTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDK 444 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~-~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk 444 (621)
|+||+||||+|||++++.+++.+.. .+ +..+. ...+. ...++. -..+.-....+..+...+++|||++.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~~--~~i~~~-~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRGI--DVVRNQ-IKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCSH--HHHHTH-HHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccCh--HHHHHH-HHHHHhccccCCCCCceEEEEECccc
Confidence 7999999999999999999887421 11 11111 10000 000000 00000000011012357999999999
Q ss_pred CChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 445 LPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 445 ~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
+..+.++.|+..+++. +..+.+|.++|... .+.+++.+|+. .+....++.++
T Consensus 119 l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sr~~--~i~~~~~~~~~ 170 (323)
T 1sxj_B 119 MTAGAQQALRRTMELY-------------SNSTRFAFACNQSN-------------KIIEPLQSQCA--ILRYSKLSDED 170 (323)
T ss_dssp SCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE--EEECCCCCHHH
T ss_pred CCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh-------------hchhHHHhhce--EEeecCCCHHH
Confidence 9999999999999862 34566777777642 57899999994 56667777777
Q ss_pred HHHHHHHHHh
Q psy11213 525 DLKLAQHITY 534 (621)
Q Consensus 525 d~~ia~~il~ 534 (621)
-..+..+.+.
T Consensus 171 ~~~~l~~~~~ 180 (323)
T 1sxj_B 171 VLKRLLQIIK 180 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 84
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.53 E-value=3.1e-07 Score=97.14 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=61.9
Q ss_pred eeEecCCCCCChhh-hhh-hHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEE
Q psy11213 436 ICCIDEFDKLPDAD-RTA-IHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLL 513 (621)
Q Consensus 436 i~~IDEidk~~~~~-~~~-L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli 513 (621)
+++|||++.+.... +.. +...++.. .++.+|+|+|...- . ..+.+++++||+.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~--------~--~~l~~~l~sr~~~- 190 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINV--------R--DYMEPRVLSSLGP- 190 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTT--------T--TTSCHHHHHTCCC-
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCch--------H--hhhCHHHHhcCCC-
Confidence 99999999986542 444 44444321 46788999986521 0 2478999999976
Q ss_pred EEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 514 WLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 514 ~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
.+..+.++.++-..+..+.+.... ....++.+.+.....++.
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 191 SVIFKPYDAEQLKFILSKYAEYGL-------IKGTYDDEILSYIAAISA 232 (384)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTS-------CTTSCCSHHHHHHHHHHH
T ss_pred eEEECCCCHHHHHHHHHHHHHhhc-------ccCCcCHHHHHHHHHHHH
Confidence 666677788887787777654210 112456666666666665
No 85
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.7e-07 Score=98.20 Aligned_cols=92 Identities=12% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
+..|++|||++.++...++.|+..|++- +..+.+|.++|... .+.+++.|||
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-- 185 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS--
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhh-------------cCCCEEEEEeCCHH-------------HHHHHHHhhc--
Confidence 4559999999999999999999999862 23355666666442 4789999999
Q ss_pred EEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCC-HHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPID-MSLVRRYIDLC 561 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~-~~~lr~~i~~a 561 (621)
..+-...++.++-..+.+++.... ...++ .+.+...+..+
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILSDVVTNE---------RIQLETKDILKRIAQAS 226 (354)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHH---------TCEECCSHHHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHHHHHHHc---------CCCCCcHHHHHHHHHHc
Confidence 555667777777777776665421 11244 55565555554
No 86
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.52 E-value=6.2e-09 Score=97.97 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=63.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCcc-----ccceEEEeecCccccee--ee--ccceeecC-CCeeEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSG-----VGLTAAVMKDPITNEMV--LE--GGALVLAD-QGICCI 439 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~-----~gLta~~~~~~~~g~~~--l~--~GalvlAd-~gi~~I 439 (621)
++||+|+||||||++++.+++.+........ .+... .++... ....+.+. +. -..+..++ +.+++|
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG---AKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH---CCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC---CCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 8999999999999999999988643110000 00000 000000 00001100 00 00111122 349999
Q ss_pred cCCCCCC---------hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 440 DEFDKLP---------DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 440 DEidk~~---------~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
||++.+. .+..+.|...++. .++.+|+++|+.. ......+++++++||
T Consensus 122 De~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~--------~~~~~~~~~~l~~R~ 178 (187)
T 2p65_A 122 DEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSE--------YRQFIEKDKALERRF 178 (187)
T ss_dssp TTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHH--------HHHHTTTCHHHHHHE
T ss_pred eCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHH--------HHHHHhccHHHHHhc
Confidence 9999986 3334455555543 3467899998752 122235889999999
Q ss_pred cE
Q psy11213 511 DL 512 (621)
Q Consensus 511 Dl 512 (621)
+.
T Consensus 179 ~~ 180 (187)
T 2p65_A 179 QQ 180 (187)
T ss_dssp EE
T ss_pred Cc
Confidence 74
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=9.1e-07 Score=98.10 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=73.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC-CCCccccceEEEeecC-----cccceeee-ccceeecCCCeeEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG-RGSSGVGLTAAVMKDP-----ITNEMVLE-GGALVLADQGICCIDEFD 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g-~~~s~~gLta~~~~~~-----~~g~~~l~-~GalvlAd~gi~~IDEid 443 (621)
++||+||||||||++++++++.+...++... .......+........ ..+-+... .+......++|++|||+|
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence 8999999999999999999998754443211 1100000000000000 00000000 000112345799999999
Q ss_pred CCChhhh---hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 444 KLPDADR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 444 k~~~~~~---~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
.+...++ ..|...++.. +..+|.++|.... -.+ +++.+|+ ..+.+..|
T Consensus 159 ~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~-----------~~l-~~l~~r~--~~i~f~~~ 209 (516)
T 1sxj_A 159 GMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNL-----------PKM-RPFDRVC--LDIQFRRP 209 (516)
T ss_dssp GCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTS-----------STT-GGGTTTS--EEEECCCC
T ss_pred ccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCC-----------ccc-hhhHhce--EEEEeCCC
Confidence 9988766 6677777642 2335555554310 013 4566665 45566777
Q ss_pred ChHHHHHHHHHHHh
Q psy11213 521 DRDNDLKLAQHITY 534 (621)
Q Consensus 521 d~~~d~~ia~~il~ 534 (621)
+.+.-.++...+..
T Consensus 210 ~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 210 DANSIKSRLMTIAI 223 (516)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 87776666666543
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.43 E-value=8.9e-07 Score=92.55 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCCeeEecCCCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccccE
Q psy11213 433 DQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512 (621)
Q Consensus 433 d~gi~~IDEidk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDl 512 (621)
...|++|||+|+|+.+..++|+..||+- +..+.+|.++|... .+.+++.||+
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~~~-------------~l~~ti~SRc-- 159 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRC-- 159 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS--
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH-------------hCcHHHhhcc--
Confidence 4579999999999999999999999862 33455555555331 5899999999
Q ss_pred EEEecCCCChHHHHHHHHHH
Q psy11213 513 LWLIQDKPDRDNDLKLAQHI 532 (621)
Q Consensus 513 i~~~~d~~d~~~d~~ia~~i 532 (621)
..+....++.++-.....+.
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHh
Confidence 34555677776655554443
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.32 E-value=7.6e-07 Score=103.81 Aligned_cols=129 Identities=23% Similarity=0.262 Sum_probs=81.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEec-CCCCccccceEEEeecCcccceeeecc-cee---ecCCCeeEecCCCC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTT-GRGSSGVGLTAAVMKDPITNEMVLEGG-ALV---LADQGICCIDEFDK 444 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~-g~~~s~~gLta~~~~~~~~g~~~l~~G-alv---lAd~gi~~IDEidk 444 (621)
-++||+|+||||||+|+++++..++...+.. +.. +. ....|+..-.-+ .+- ....++++|||++.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~-----l~-----~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPE-----IM-----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHH-----HS-----SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchH-----hh-----hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHH
Confidence 4899999999999999999999876554321 110 00 000111100000 010 11357999999987
Q ss_pred CChh-----------hhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhc--ccc
Q psy11213 445 LPDA-----------DRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLS--RFD 511 (621)
Q Consensus 445 ~~~~-----------~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLls--RFD 511 (621)
+.+. ....|++.|+... -...+.+++|+|+.. .+++++.+ |||
T Consensus 309 l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~gRf~ 364 (806)
T 1ypw_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFD 364 (806)
T ss_dssp TSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECSCTT-------------TSCTTTTSTTSSC
T ss_pred hhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccCCch-------------hcCHHHhcccccc
Confidence 6542 3356667776321 124578999999873 47777777 998
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q psy11213 512 LLWLIQDKPDRDNDLKLAQHIT 533 (621)
Q Consensus 512 li~~~~d~~d~~~d~~ia~~il 533 (621)
..+....|+.+...++.+...
T Consensus 365 -~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 365 -REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp -EEECCCCCCHHHHHHHHHHTT
T ss_pred -cccccCCCCHHHHHHHHHHHH
Confidence 456678889888888887654
No 90
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.23 E-value=2.3e-06 Score=89.96 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=85.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc------c-EEecCCC-CccccceEEEee-----cCccc----c-eeeeccceeec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR------S-QYTTGRG-SSGVGLTAAVMK-----DPITN----E-MVLEGGALVLA 432 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr------~-~~~~g~~-~s~~gLta~~~~-----~~~~g----~-~~l~~GalvlA 432 (621)
+++|+|+||||||+|++.+++.++. . ++..+.. .+...+...... .+..| + +..-...+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999999987632 1 2222110 000000000000 00000 0 00000000001
Q ss_pred -CCCeeEecCCCCCC----hhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHh
Q psy11213 433 -DQGICCIDEFDKLP----DADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALL 507 (621)
Q Consensus 433 -d~gi~~IDEidk~~----~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLl 507 (621)
...+++|||++.+. .+....|+..++.. -+.++.+|+++|... .. ..+.+.+.
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~--------~~--~~~~~~~~ 184 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVK--------FV--DLLDPRVK 184 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGG--------GG--GGCTTHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCC--------hH--hhhCHHHh
Confidence 13589999999875 33444555555432 123467788887542 11 13678899
Q ss_pred ccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 508 SRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 508 sRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
+||....+....++.++-.++..+.+.... ....++.+.++....++.
T Consensus 185 ~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 185 SSLSEEEIIFPPYNAEELEDILTKRAQMAF-------KPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp HTTTTEEEEECCCCHHHHHHHHHHHHHHHB-------CSSCSCHHHHHHHHHHHH
T ss_pred ccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-------cCCCCCHHHHHHHHHHHH
Confidence 999755666777888777777776553211 112456666666655554
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.21 E-value=1.7e-06 Score=79.64 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=48.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLP 446 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~ 446 (621)
.++|+|++|+|||+|++.++..++. .+|..+.... .. + .+.+..+++|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~--------------~~------~-~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP--------------LT------D-AAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC--------------CC------G-GGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh--------------HH------H-HHhCCCEEEEeCccccC
Confidence 7899999999999999999988642 1121111100 00 1 12356899999999998
Q ss_pred hhhhhhhHhhhcc
Q psy11213 447 DADRTAIHEVMEQ 459 (621)
Q Consensus 447 ~~~~~~L~eame~ 459 (621)
+..+..|.+.++.
T Consensus 97 ~~~~~~l~~li~~ 109 (149)
T 2kjq_A 97 NEEQALLFSIFNR 109 (149)
T ss_dssp SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8778888888764
No 92
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=1.2e-06 Score=90.41 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=71.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc-------cccEEecCCCCccccceEEEeecCcccceeeeccce-eecCCCeeEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA-------RRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL-VLADQGICCIDE 441 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~-------pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~Gal-vlAd~gi~~IDE 441 (621)
.+.||+||||+|||++++.+++.. |......+.+. ..|. ..++ +..-.+... ..++..|++|||
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~~i--d~ir-----~li~~~~~~p~~~~~kvviIde 90 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NIGI--DDIR-----TIKDFLNYSPELYTRKYVIVHD 90 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CBCH--HHHH-----HHHHHHTSCCSSSSSEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CCCH--HHHH-----HHHHHHhhccccCCceEEEecc
Confidence 389999999999999999998742 11111111000 0000 0000 000000000 123457999999
Q ss_pred CCCCChhhhhhhHhhhcceEEEEecCCeEEecCCcce-EEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCC
Q psy11213 442 FDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS-ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKP 520 (621)
Q Consensus 442 idk~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~-viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~ 520 (621)
++.|+.+.+++|+..||+- |..+. |++|.||. .+.+++.|| ++-+ ..+
T Consensus 91 ad~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~--------------kl~~tI~SR---~~~f-~~l 139 (305)
T 2gno_A 91 CERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH--------------YLLPTIKSR---VFRV-VVN 139 (305)
T ss_dssp GGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG--------------GSCHHHHTT---SEEE-ECC
T ss_pred HHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH--------------hChHHHHce---eEeC-CCC
Confidence 9999999999999999963 23334 44444543 589999999 3333 344
Q ss_pred ChHHHHHHHHHH
Q psy11213 521 DRDNDLKLAQHI 532 (621)
Q Consensus 521 d~~~d~~ia~~i 532 (621)
+.++-.....+.
T Consensus 140 ~~~~i~~~L~~~ 151 (305)
T 2gno_A 140 VPKEFRDLVKEK 151 (305)
T ss_dssp CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444444
No 93
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=6.8e-06 Score=79.31 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=60.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhh-
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD- 449 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~- 449 (621)
++|++||||||||+++.++++.+...+.. -.+ . .+. +.+. .+.+.-+++|||++...-..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~-fan------------s-~s~-f~l~----~l~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVIS-FVN------------S-TSH-FWLE----PLTDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECC-CCC------------S-SSC-GGGG----GGTTCSSEEEEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee-EEe------------c-cch-hhhc----ccCCCCEEEEECCCchhHHHH
Confidence 79999999999999999999986322110 000 0 001 1111 23345699999998432111
Q ss_pred hhhhHhhhcceEEEEecCCeE-EecCCcceEEeecCCCCCCCCCCCCcccccCCCHhHhccc
Q psy11213 450 RTAIHEVMEQQTISIAKAGIM-TRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRF 510 (621)
Q Consensus 450 ~~~L~eame~q~isi~k~gi~-~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRF 510 (621)
...+..+|+...+++.+.-.. ...+ ...+|-|+|-.-. +. .--.+|.||.
T Consensus 121 d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~---------~~-~~~~~L~SRi 171 (212)
T 1tue_A 121 DTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPA---------KD-NRWPYLESRI 171 (212)
T ss_dssp HHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTT---------SS-SSCHHHHTSC
T ss_pred HHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCcc---------cc-cchhhhhhhE
Confidence 234566677666666322111 1122 2357778885311 11 1237899998
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=2.9e-06 Score=80.06 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=54.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecC-----cccceeeeccceeecCCCeeEecCCC--
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDP-----ITNEMVLEGGALVLADQGICCIDEFD-- 443 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~-----~~g~~~l~~GalvlAd~gi~~IDEid-- 443 (621)
+++|+||||+|||+|+++++..+... .|..... ++.....+. ..+. ...-.-.+.+..+++|||++
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGYF--FDTKDLIFRLKHLMDEGK--DTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCCE--EEHHHHHHHHHHHHHHTC--CSHHHHHHHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEEE--EEHHHHHHHHHHHhcCch--HHHHHHHhcCCCEEEEeCCCCC
Confidence 79999999999999999999886310 0100000 000000000 0000 00000012356899999998
Q ss_pred CCChhhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCC
Q psy11213 444 KLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPA 486 (621)
Q Consensus 444 k~~~~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~ 486 (621)
.+++..+..+++.++... .....+|.|+|..
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYS 143 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCC
Confidence 566777778888776421 1235677788865
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.67 E-value=0.0002 Score=71.97 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=61.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCcccceeeeccceeecCCCeeEecCCCCCChhhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDADR 450 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~~g~~~l~~GalvlAd~gi~~IDEidk~~~~~~ 450 (621)
+++|+||||||||.+++++++.++..--++. + ...+.+.+ +.++-+++.||.... .+..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~---~-------------~~~f~l~~----~~~k~i~l~Ee~~~~-~d~~ 164 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNW---T-------------NENFPFND----CVDKMVIWWEEGKMT-AKVV 164 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECCT---T-------------CSSCTTGG----GSSCSEEEECSCCEE-TTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceeec---c-------------cccccccc----ccccEEEEeccccch-hHHH
Confidence 7999999999999999999997543111110 0 00111111 123455666666544 4455
Q ss_pred hhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccc---cCCCHhHhccc
Q psy11213 451 TAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQN---IQLPAALLSRF 510 (621)
Q Consensus 451 ~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~---~~L~~aLlsRF 510 (621)
..+-.+|+-..+.+......-..-.++-+|-|+|-.-..+ ..++ ....++|.||.
T Consensus 165 ~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~-----~~g~~~s~~~~~~L~sR~ 222 (267)
T 1u0j_A 165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAV-----IDGNSTTFEHQQPLQDRM 222 (267)
T ss_dssp HHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCE-----EETTEEECTTHHHHHTTE
T ss_pred HHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccc-----cccCccchhhhHHHhhhE
Confidence 6777788877777642211111113456777888531110 0111 24557899998
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.47 E-value=0.00011 Score=78.17 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=55.8
Q ss_pred CeeEecCCCCCCh------hhhhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCC---Hh
Q psy11213 435 GICCIDEFDKLPD------ADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLP---AA 505 (621)
Q Consensus 435 gi~~IDEidk~~~------~~~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~---~a 505 (621)
-+++|||++.+.. +....+...+++.. . .+ ...++.+|+++|... +.+ .+. +.
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~--~--~~----~~~~v~lI~~~~~~~--------~~~--~l~~~~~~ 201 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP--S--RD----GVNRIGFLLVASDVR--------ALS--YMREKIPQ 201 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC--C--TT----SCCBEEEEEEEEETH--------HHH--HHHHHCHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc--c--CC----CCceEEEEEEecccc--------HHH--HHhhhcch
Confidence 3899999998754 33344445554310 0 00 025677888876431 111 133 56
Q ss_pred HhccccEEEEecCCCChHHHHHHHHHHHhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy11213 506 LLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCK 562 (621)
Q Consensus 506 LlsRFDli~~~~d~~d~~~d~~ia~~il~~~~~~~~~~~~~~~i~~~~lr~~i~~ar 562 (621)
+.+||... +.....+.++-.++..+.+..... ...++.+.+......+.
T Consensus 202 ~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~-------~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 202 VESQIGFK-LHLPAYKSRELYTILEQRAELGLR-------DTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBC-------TTSCCHHHHHHHHHHHC
T ss_pred hhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCC-------CCCCChHHHHHHHHHHH
Confidence 77888655 666777777666666655432210 12355666666666554
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.37 E-value=0.00052 Score=66.10 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc--------c-ccEEecCCCCccccceEEEe-e-c--Ccccceeeeccc---e-eecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA--------R-RSQYTTGRGSSGVGLTAAVM-K-D--PITNEMVLEGGA---L-VLAD 433 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~--------p-r~~~~~g~~~s~~gLta~~~-~-~--~~~g~~~l~~Ga---l-vlAd 433 (621)
..|+.|+||+|||+++....... . |.+|.++...-..+.+.... + . ..+++- ..+.. + ..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQ-LSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSC-EEGGGHHHHTTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCccc-ccHHHHHHHhhccc
Confidence 56899999999999987753332 2 55554432111111111000 0 0 000100 00000 0 0244
Q ss_pred --CCeeEecCCCCCChhh-----hhhhHhhhcceEEEEecCCeEEecCCcceEEeecCCCCCCCCCCCCcccccCCCHhH
Q psy11213 434 --QGICCIDEFDKLPDAD-----RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAAL 506 (621)
Q Consensus 434 --~gi~~IDEidk~~~~~-----~~~L~eame~q~isi~k~gi~~~l~ar~~viAa~Np~~g~~~~~~~~~~~~~L~~aL 506 (621)
+.|++|||.+.+.+.. ...++..++... .....||.+++|. -.|+.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~-------------~~l~~~l 140 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGP-------------KLLDQNL 140 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCG-------------GGBCHHH
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCH-------------HHHhHHH
Confidence 7899999999873211 113444444311 1224555566664 2588899
Q ss_pred hccccEEEEecC
Q psy11213 507 LSRFDLLWLIQD 518 (621)
Q Consensus 507 lsRFDli~~~~d 518 (621)
.+|++..+.+..
T Consensus 141 r~ri~~~~~l~~ 152 (199)
T 2r2a_A 141 RTLVRKHYHIAS 152 (199)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHhheEEEEcC
Confidence 999988777755
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.25 E-value=2.1e-05 Score=81.15 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+++|+|+||||||.|++++++.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3999999999999999999998765
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.76 E-value=0.0016 Score=61.75 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.0
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcc
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQ 459 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~ 459 (621)
..+++|||+..++++....|...+++
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC
Confidence 46999999999977766666666654
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.64 E-value=0.00079 Score=63.55 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
++.|+|++|+|||+|++.++...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999998865
No 101
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.78 E-value=0.0039 Score=59.31 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
+++|+|+||||||+|++++++.+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.64 E-value=0.013 Score=63.42 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=49.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc-----cEEecCCCCcc------ccceEEEee---------cCcccceeeecccee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR-----SQYTTGRGSSG------VGLTAAVMK---------DPITNEMVLEGGALV 430 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr-----~~~~~g~~~s~------~gLta~~~~---------~~~~g~~~l~~Galv 430 (621)
++++.|+||||||+++..++..+.. ...++..+..+ .|..+.... ......+.. ...-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~-~~~~~ 125 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQ-KEVPD 125 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE-CSCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcc-ccccc
Confidence 8999999999999999998776431 12222211100 011111100 000111111 11112
Q ss_pred ecCCCeeEecCCCCCChhhhhhhHhhhc
Q psy11213 431 LADQGICCIDEFDKLPDADRTAIHEVME 458 (621)
Q Consensus 431 lAd~gi~~IDEidk~~~~~~~~L~eame 458 (621)
+....+++|||+..++......|...+.
T Consensus 126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp CSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred ccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 2346799999999999888888887775
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.59 E-value=0.015 Score=60.19 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=71.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEeecCc--cccee--eeccceeecCCCeeEecCCCC-C
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI--TNEMV--LEGGALVLADQGICCIDEFDK-L 445 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~~~~--~g~~~--l~~GalvlAd~gi~~IDEidk-~ 445 (621)
..||+||+|+||++.++.+++.+... +. ... .....+.. -.+.. ....++ .++.-|++|||.+. +
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~----~~--~~~---~~~~~~~~~~~~~l~~~~~~~pl-f~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQ----GF--EEH---HTFSIDPNTDWNAIFSLCQAMSL-FASRQTLLLLLPENGP 89 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHH----TC--CEE---EEEECCTTCCHHHHHHHHHHHHH-CCSCEEEEEECCSSCC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhC----CC--Cee---EEEEecCCCCHHHHHHHhcCcCC-ccCCeEEEEECCCCCC
Confidence 67889999999999999987754211 00 000 00001100 00000 001111 24567999999999 9
Q ss_pred ChhhhhhhHhhhcceEEEEecCCeEEecCCcc-eEEeecCCCCCCCCCCCCcccccCCCHhHhccccEEEEecCCCChHH
Q psy11213 446 PDADRTAIHEVMEQQTISIAKAGIMTRLNARV-SILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDN 524 (621)
Q Consensus 446 ~~~~~~~L~eame~q~isi~k~gi~~~l~ar~-~viAa~Np~~g~~~~~~~~~~~~~L~~aLlsRFDli~~~~d~~d~~~ 524 (621)
+.+..++|+..+|+- |..+ .|++|.++.. ......+.+++.+|. ..+-...++...
T Consensus 90 ~~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~--------~~~~~k~~~~i~sr~--~~~~~~~l~~~~ 146 (343)
T 1jr3_D 90 NAAINEQLLTLTGLL-------------HDDLLLIVRGNKLSK--------AQENAAWFTALANRS--VQVTCQTPEQAQ 146 (343)
T ss_dssp CTTHHHHHHHHHTTC-------------BTTEEEEEEESCCCT--------TTTTSHHHHHHTTTC--EEEEECCCCTTH
T ss_pred ChHHHHHHHHHHhcC-------------CCCeEEEEEcCCCCh--------hhHhhHHHHHHHhCc--eEEEeeCCCHHH
Confidence 999999999999851 2233 3444443321 111125778999998 333444455444
Q ss_pred HHHHHHHHH
Q psy11213 525 DLKLAQHIT 533 (621)
Q Consensus 525 d~~ia~~il 533 (621)
-....+.++
T Consensus 147 l~~~l~~~~ 155 (343)
T 1jr3_D 147 LPRWVAARA 155 (343)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 104
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.36 E-value=0.0086 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.|.|+|+||+|||++++.++..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998654
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.36 E-value=0.01 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
.|+|+|+||+|||++++.+++.++...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 689999999999999999999876543
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.22 E-value=0.009 Score=55.77 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
+|+|+|+||+|||++++.+++.+....+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999988654443
No 107
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.21 E-value=0.0094 Score=55.28 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
+|+|+|+||+|||++++.+++.+....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 6899999999999999999988654433
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.11 E-value=0.01 Score=54.54 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=24.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
||+|.|.||+|||++++.+++.+...++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999999976555544
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.11 E-value=0.013 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
.|+|.|+||+|||++++.+++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 58899999999999999999886533
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.97 E-value=0.012 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
.|+|+|+||+|||++++.+++.+....
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 799999999999999999998864433
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.96 E-value=0.014 Score=65.13 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=46.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc----cEEecCCCCccc------cceEEEeecCc--c-cceeeeccceeecCCCee
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR----SQYTTGRGSSGV------GLTAAVMKDPI--T-NEMVLEGGALVLADQGIC 437 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr----~~~~~g~~~s~~------gLta~~~~~~~--~-g~~~l~~GalvlAd~gi~ 437 (621)
.+++.|+||||||+++..+...+.. ..+.+..+..+. |..+..+..-. . ..+. ...--..+..++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~--~~~~~~~~~dvl 283 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFR--HNHLEPAPYDLL 283 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEES--CSSSSCCSCSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhh--hhhcccccCCEE
Confidence 8999999999999999998776421 122211111000 11111110000 0 0011 000011135799
Q ss_pred EecCCCCCChhhhhhhHhhhc
Q psy11213 438 CIDEFDKLPDADRTAIHEVME 458 (621)
Q Consensus 438 ~IDEidk~~~~~~~~L~eame 458 (621)
+|||+..++......|++++.
T Consensus 284 IIDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 284 IVDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp EECCGGGCCHHHHHHHHTTSC
T ss_pred EEcCccCCCHHHHHHHHHhCc
Confidence 999999999887777777764
No 112
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.86 E-value=0.014 Score=55.97 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|.|+||+|||++++.+++.++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68999999999999999998876554443
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.85 E-value=0.013 Score=54.44 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|+|+||+|||++++.+++.+....+.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 79999999999999999999886544443
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.64 E-value=0.016 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=19.8
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.|+|+|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999998
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.61 E-value=0.016 Score=53.96 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|+|+|+||+|||++++.+++.+...++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 58999999999999999999976544443
No 116
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.59 E-value=0.015 Score=54.16 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
..|+|+|+||+|||++++.+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3689999999999999999998654333
No 117
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.59 E-value=0.018 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|+|+||+|||++++.+ +......+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 5889999999999999999 65444333
No 118
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.55 E-value=0.017 Score=55.32 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|.|+||+|||++++.+++.++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 68999999999999999998876544443
No 119
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.47 E-value=0.019 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.435 Sum_probs=23.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh-ccccEE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL-ARRSQY 398 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~-~pr~~~ 398 (621)
.+|+|+|+||+|||++++.+++. ....++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 37999999999999999999998 443333
No 120
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.47 E-value=0.023 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.|+|+|+||+|||++++.+++.++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999988643
No 121
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.44 E-value=0.02 Score=55.12 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=24.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
..|+|+|+||+|||++++.+++.+....+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 47999999999999999999987654433
No 122
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.43 E-value=0.034 Score=62.54 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+++.|+||||||+++.++...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999888776543
No 123
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.35 E-value=0.021 Score=52.49 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|.|+||+|||++++.+++.+...++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999997654443
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.35 E-value=0.027 Score=55.94 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.++|+|+||+|||+|++.+++.++..++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~ 31 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVA 31 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence 47899999999999999999886654443
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.33 E-value=0.024 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||++++.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999987543
No 126
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.27 E-value=0.021 Score=54.98 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=25.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.|+|.||||+||++.++.+++.+.-....+|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 5889999999999999999998654444433
No 127
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.27 E-value=0.027 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+||+|||++++.++..+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC
Confidence 689999999999999999998753
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.27 E-value=0.022 Score=53.17 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
.|+|+|+||+|||++++.+++.+....
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 689999999999999999998754433
No 129
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.25 E-value=0.022 Score=53.99 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
..|+|+|+||+|||++++.+++.+...++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 479999999999999999999876544433
No 130
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.23 E-value=0.033 Score=52.67 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++...|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 477899999999999999999876
No 131
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.20 E-value=0.022 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..|+|.|+||+|||++++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.16 E-value=0.029 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||++++.++..+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 688999999999999999998863
No 133
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.15 E-value=0.045 Score=57.29 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++||+|+|||++++.++...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 899999999999999999988764
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.13 E-value=0.019 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|+||+|||++++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68899999999999999999873
No 135
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.09 E-value=0.026 Score=51.65 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=23.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|.|.||+|||++++.+++.+...++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999997654443
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.02 E-value=0.027 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|.|.||+|||++++.+++.+...++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6899999999999999999988665443
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.02 E-value=0.022 Score=53.35 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|.|+|+||+|||++++.+++.++...+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 7899999999999999999987654443
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.98 E-value=0.028 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|+|+|+||+|||++++.+++.+.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998754
No 139
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.96 E-value=0.028 Score=54.12 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|.|+|++|+|||++++.+++.++-....
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 68999999999999999999876543333
No 140
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.88 E-value=0.022 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|+|+|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999764
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.88 E-value=0.028 Score=54.78 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.+|+|+|+||+|||++++.+++.+....+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 389999999999999999999886544443
No 142
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.82 E-value=0.025 Score=53.10 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|.|+|+||+|||++++.+++.+....+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999998654333
No 143
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.034 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||+|+|||+|++.++...+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998865
No 144
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.76 E-value=0.029 Score=54.41 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|+|+||+|||++++.+++.+....+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 7899999999999999999987654443
No 145
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.75 E-value=0.026 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+|+|.|+||+|||++++.+++.+...++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 68999999999999999999876544443
No 146
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.71 E-value=0.034 Score=52.92 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..++|+|+||+|||++++.+++.++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3689999999999999999998875
No 147
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.70 E-value=0.028 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|+||+|||++++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999654
No 148
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.67 E-value=0.028 Score=52.37 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
.|+|+|+||+|||++++.+++.++...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6899999999999999999987654433
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.67 E-value=0.031 Score=54.33 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=23.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
-|+|+||||+||++.++.+++.+.-....
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 47889999999999999999986544333
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.64 E-value=0.036 Score=52.43 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|+|+|+||+|||++++.+++.++...+.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 68999999999999999999876544433
No 151
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.62 E-value=0.033 Score=54.83 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=25.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
..|+|.|+||+|||++++.+++.++...+.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4799999999999999999998765544443
No 152
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.61 E-value=0.034 Score=53.85 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|+|.|+||+|||++++.+++.+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 58999999999999999999876544433
No 153
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.58 E-value=0.031 Score=53.87 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=24.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
..|+|+|+||+|||++++.+++.+....+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 479999999999999999999986544443
No 154
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.53 E-value=0.042 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.|.|+|+||+|||++++.+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999997653
No 155
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.51 E-value=0.047 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++|+|+||+|||++++.+++.++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 156
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.40 E-value=0.038 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|+|.|+||+|||++++.+++.++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998754
No 157
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.36 E-value=0.069 Score=53.86 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=29.3
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+...+.+|-..+..+. -+.|+|+.|+|||+|++.++.+.+
T Consensus 32 ~~~~vL~~isl~i~~Ge---------~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGD---------KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTEEEEEEEEEEEETTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEeeeEEEcCCC---------EEEEECCCCCcHHHHHHHHhCCCC
Confidence 33444555544333344 678999999999999999998864
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.35 E-value=0.035 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||++++.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999864
No 159
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.33 E-value=0.028 Score=54.19 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=23.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
..|+|+|+||+|||++++.+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999999988654
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.28 E-value=0.043 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|++|+|||++++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68899999999999999999986
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.09 E-value=0.049 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5789999999999999999998764
No 162
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.06 E-value=0.047 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|+||+|||+|++.+...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999988643
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.89 E-value=0.041 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++|+|+||+|||++++.+++.++
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999999865
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.70 E-value=0.21 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+|+|++|+|||+|+..+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999998765
No 165
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.64 E-value=0.054 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|.|+|++|+|||++++.+++ +.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 588999999999999999998 54
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.64 E-value=0.055 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..+.|+|.||+|||++++.++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998864
No 167
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.62 E-value=0.061 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.60 E-value=0.061 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+||+|+|||+|++.++...+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4678999999999999999998763
No 169
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.57 E-value=0.11 Score=52.02 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=28.8
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
|++..+.+|-..+..+. -+.|+|+.|+|||+|++.++.+
T Consensus 31 ~~~~vl~~vsl~i~~Ge---------~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGE---------VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEEeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhCC
Confidence 44445555544444444 6889999999999999999987
No 170
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.56 E-value=0.065 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|+..+..-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999888754
No 171
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.55 E-value=0.052 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++..++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 678999999999999999999875
No 172
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.55 E-value=0.092 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999987753
No 173
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.54 E-value=0.11 Score=51.80 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=29.8
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+...+.+|-..+..+. -+.|+|+.|+|||+|++.++.+.+
T Consensus 17 ~~~~vl~~vsl~i~~Ge---------~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGD---------VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEeeEEEEcCCC---------EEEEECCCCCCHHHHHHHHhcCCC
Confidence 44445555544444444 678999999999999999998864
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.50 E-value=0.064 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.7
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.+.|+|++|+|||++++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 175
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.45 E-value=0.069 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
++|+++|+||+|||+|++++....+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5899999999999999998877643
No 176
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.45 E-value=0.071 Score=52.72 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
.|.|+|++|+|||++++.+++.+.-..+.+|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 7889999999999999999977654444443
No 177
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.39 E-value=0.069 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998765
No 178
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.39 E-value=0.082 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-+.|+|++|+|||+|++.++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999875
No 179
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.39 E-value=0.066 Score=52.55 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
..+.|.|+||+|||++++.+++.+.-..+..|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 47999999999999999999987654444433
No 180
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.38 E-value=0.081 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
|.|.|+||+|||++++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999886
No 181
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.37 E-value=0.073 Score=50.13 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=22.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..|.|+|+||+|||++++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999986
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.37 E-value=0.065 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|+|+|.||+|||++++.+++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 183
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.36 E-value=0.069 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 184
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.067 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998753
No 185
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.34 E-value=0.071 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.32 E-value=0.068 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=21.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.|.|.|.||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 187
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.28 E-value=0.07 Score=48.44 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 58999999999999999988654
No 188
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.27 E-value=0.073 Score=52.81 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|.|+|++|+|||++++.+++.+....+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 89999999999999999999976554443
No 189
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.26 E-value=0.069 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+||+|+|||+|++.+....+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999998865
No 190
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.25 E-value=0.073 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 191
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.21 E-value=0.11 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999988754
No 192
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.20 E-value=0.075 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998654
No 193
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.16 E-value=0.076 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998753
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.15 E-value=0.054 Score=51.43 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|.|.|.||+|||++++.+++.++
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 195
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.14 E-value=0.16 Score=49.37 Aligned_cols=22 Identities=14% Similarity=-0.147 Sum_probs=17.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
=+++.|+||+|||+++..++..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999977766554
No 196
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.13 E-value=0.077 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 197
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.07 E-value=0.13 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+|+|+||+|||+|+..+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998754
No 198
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.05 E-value=0.12 Score=51.57 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.2
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+...+.+|-..+..+. -+.|+|+.|+|||+|++.++.+.+
T Consensus 22 ~~~~vL~~vsl~i~~Ge---------~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 22 QQQALINDVSLHIASGE---------MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTEEEEEEEEEEEETTC---------EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCeeEEEeeEEEEcCCC---------EEEEECCCCCcHHHHHHHHhcCCC
Confidence 44445566644444444 678999999999999999998854
No 199
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.05 E-value=0.079 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++..-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998753
No 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.05 E-value=0.075 Score=49.96 Aligned_cols=24 Identities=46% Similarity=0.704 Sum_probs=21.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+.+.|+|++|+|||+|++.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998763
No 201
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.03 E-value=0.081 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467889999999999999999986
No 202
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.02 E-value=0.029 Score=60.23 Aligned_cols=90 Identities=12% Similarity=-0.022 Sum_probs=46.2
Q ss_pred EEEeCCCCcchhHHHHHHHhhccccEEecCCCCccccceEEEee----cCcc-ccee-----eeccceeecCCCeeEecC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMK----DPIT-NEMV-----LEGGALVLADQGICCIDE 441 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~~~s~~gLta~~~~----~~~~-g~~~-----l~~GalvlAd~gi~~IDE 441 (621)
.++.|+||+|||+++..++..-+..+.+ ........+-..... .... .-.+ +.++.....+..+++|||
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~~~~lVlT-pT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNFEEDLILV-PGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDE 242 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCTTTCEEEE-SCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEET
T ss_pred EEEEcCCCCCHHHHHHHHhccCCeEEEe-CCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeC
Confidence 4678999999999998877542222222 221111111100000 0000 0011 111111111257999999
Q ss_pred CCCCChhhhhhhHhhhcceEE
Q psy11213 442 FDKLPDADRTAIHEVMEQQTI 462 (621)
Q Consensus 442 idk~~~~~~~~L~eame~q~i 462 (621)
+.+++......++.+.....+
T Consensus 243 ~sm~~~~~l~~l~~~~~~~~v 263 (446)
T 3vkw_A 243 GLMLHTGCVNFLVEMSLCDIA 263 (446)
T ss_dssp GGGSCHHHHHHHHHHTTCSEE
T ss_pred cccCCHHHHHHHHHhCCCCEE
Confidence 999998877777766654443
No 203
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.01 E-value=0.077 Score=50.07 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
.|.|.|++|+|||++++.+++.++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999766555443
No 204
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.98 E-value=0.082 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.97 E-value=0.084 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+||+|||++++.+++.++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999999864
No 206
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.96 E-value=0.11 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRS 396 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~ 396 (621)
.|.|+||+|+|||+|++.+.+..|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 58999999999999999998877653
No 207
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.94 E-value=0.088 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++...|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999999874
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.93 E-value=0.068 Score=49.45 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.0
Q ss_pred cEEEeCCCCcchhHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYI 389 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~i 389 (621)
-+.|+|++|+|||+|++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999999974
No 209
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.92 E-value=0.082 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 210
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.92 E-value=0.067 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|++|+|||+|++.++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998764
No 211
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.90 E-value=0.13 Score=53.01 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=25.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEec
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~ 400 (621)
.|+|+|++|+|||+|++.+++.++..++..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 689999999999999999999987555443
No 212
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.89 E-value=0.15 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 678999999999999999998864
No 213
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.88 E-value=0.15 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998864
No 214
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.87 E-value=0.16 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|.|+|+||+|||+|++++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999765
No 215
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.86 E-value=0.14 Score=50.25 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999988754
No 216
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.86 E-value=0.072 Score=47.99 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 217
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.81 E-value=0.089 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|+++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998765
No 218
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.79 E-value=0.089 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988754
No 219
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.75 E-value=0.089 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 220
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.74 E-value=0.064 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.015 Sum_probs=22.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..|.|+|+||+|||++++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998753
No 221
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.74 E-value=0.076 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 222
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.73 E-value=0.07 Score=48.03 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|+||+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999998753
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.63 E-value=0.12 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+||+|+|||+|++.+++..|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 6789999999999999999988763
No 224
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.63 E-value=0.15 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999998854
No 225
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.61 E-value=0.095 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||+|+|||+|++.++...|
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999876
No 226
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.59 E-value=0.12 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.|+|+|+||+|||++++.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999853
No 227
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.54 E-value=0.089 Score=51.13 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.5
Q ss_pred cEEEeCCCCcchhHHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia 390 (621)
-+.|+||+|+|||+|++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57889999999999999988
No 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.52 E-value=0.088 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+.|+|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998754
No 229
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.50 E-value=0.095 Score=48.73 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999988764
No 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.46 E-value=0.17 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678899999999999999988754
No 231
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.45 E-value=0.097 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..+|+++|++|+|||+|+.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4599999999999999999988753
No 232
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.40 E-value=0.1 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+..+..-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998653
No 233
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.39 E-value=0.1 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999988754
No 234
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.37 E-value=0.1 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998764
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.35 E-value=0.11 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++...|
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 577899999999999999999876
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.34 E-value=0.096 Score=53.87 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|.|+||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5689999999999999999875
No 237
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.33 E-value=0.084 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988764
No 238
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.33 E-value=0.088 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.|+|+|+||+|||++++.+++.++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998865
No 239
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.32 E-value=0.1 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999998754
No 240
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.31 E-value=0.098 Score=47.64 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998864
No 241
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.29 E-value=0.083 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999865
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.29 E-value=0.16 Score=52.57 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=26.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEecCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGR 402 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g~ 402 (621)
.|+|+||+|+|||+|+..+|+.++..+...+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 68899999999999999999998765554433
No 243
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.27 E-value=0.11 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.26 E-value=0.1 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+|+||+|||+|++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999855
No 245
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.23 E-value=0.12 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.5
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998765
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.21 E-value=0.17 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999987753
No 247
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.21 E-value=0.083 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++.|+|++|+|||+|++.++...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999998753
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.15 E-value=0.17 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6789999999999999999988653
No 249
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.14 E-value=0.12 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|++|+|||++++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999875
No 250
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.14 E-value=0.11 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+..-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988653
No 251
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.14 E-value=0.22 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.0
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..++|+|+|.||+|||+|+..+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3569999999999999999998765
No 252
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.13 E-value=0.11 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+.|+++|++|+|||+|++.+..-
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999776543
No 253
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.11 E-value=0.11 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 58999999999999999887654
No 254
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.09 E-value=0.098 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998765
No 255
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.07 E-value=0.097 Score=49.00 Aligned_cols=24 Identities=46% Similarity=0.704 Sum_probs=21.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+.+.|+|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 256
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.06 E-value=0.11 Score=49.23 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=23.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.|.|.|.+|+|||++++.+++.+...++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 58899999999999999999875444433
No 257
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.05 E-value=0.13 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
...|+++|++|+|||+|+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998765
No 258
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.02 E-value=0.21 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+++++|++|+|||.++..++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 69999999999999988776654
No 259
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.02 E-value=0.17 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998865
No 260
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.01 E-value=0.097 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|.|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999865
No 261
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.12 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 359999999999999999998764
No 262
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.00 E-value=0.099 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988753
No 263
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.96 E-value=0.11 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+|+++|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998754
No 264
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.96 E-value=0.12 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+..-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 265
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.94 E-value=0.12 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 266
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.94 E-value=0.12 Score=54.39 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.++|+|+||+|||+|++.++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999999999999864
No 267
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.93 E-value=0.22 Score=52.44 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=29.6
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
|+...+.+|-..+..+. -+.|+||.|+|||+|+|.++.+.+
T Consensus 14 g~~~~L~~vsl~i~~Ge---------~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGE---------FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTEEEEEEEEEEECTTC---------EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEeeeEEEECCCC---------EEEEEcCCCchHHHHHHHHHcCCC
Confidence 44445555544443344 577899999999999999999864
No 268
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.93 E-value=0.12 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 58999999999999999998754
No 269
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.92 E-value=0.12 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998754
No 270
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.91 E-value=0.12 Score=49.22 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=19.4
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
-++|+|+||+|||+|++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 271
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.91 E-value=0.11 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|.|+|++|+|||+|++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999764
No 272
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.90 E-value=0.11 Score=50.17 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.6
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
-++|+|+||+|||+|++.++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 678999999999999999987
No 273
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.90 E-value=0.11 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 469999999999999999998764
No 274
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.87 E-value=0.12 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 275
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.86 E-value=0.1 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988764
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.83 E-value=0.21 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=20.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-+.|+|+.|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999986
No 277
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.82 E-value=0.12 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.2
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998754
No 278
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.82 E-value=0.089 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999988754
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.80 E-value=0.14 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 678999999999999999998865
No 280
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.79 E-value=0.13 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+..-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988653
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.78 E-value=0.11 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.|.|++|+|||++++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999987
No 282
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.73 E-value=0.2 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.1
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
|+...+.+|=..+..+. -+.|+||.|+|||+|+|.++.+.+.
T Consensus 15 ~~~~~L~~vsl~i~~Ge---------~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGE---------ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TTEEEEEEEEEEECTTC---------EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEeeEEEEcCCC---------EEEEECCCCchHHHHHHHHhcCCCC
Confidence 44445556544443344 5788999999999999999998643
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.71 E-value=0.14 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998864
No 284
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.70 E-value=0.11 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988754
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.68 E-value=0.11 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+++|+|+||+|||++++.+++.+..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 7999999999999999999987654
No 286
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.66 E-value=0.23 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 577899999999999999999864
No 287
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.66 E-value=0.13 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998754
No 288
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.66 E-value=0.12 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 289
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.66 E-value=0.13 Score=47.68 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 290
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.65 E-value=0.11 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999998763
No 291
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.63 E-value=0.14 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999999865
No 292
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.62 E-value=0.13 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 293
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.61 E-value=0.13 Score=50.00 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
..|.|+|++|+|||++++.+++.+....+..|
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 36899999999999999999987654444433
No 294
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.59 E-value=0.13 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 295
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.52 E-value=0.18 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
..|.|.|+||+|||++++.+++.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36889999999999999999997543
No 296
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.50 E-value=0.13 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 297
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.49 E-value=0.15 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
..|.|.|++|+|||++++.+++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999998
No 298
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.47 E-value=0.11 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+|+++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 299
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.46 E-value=0.12 Score=48.18 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.44 E-value=0.25 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|+.|+|||+|++.++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6789999999999999999988653
No 301
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.43 E-value=0.16 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++|+|++|+|||+|+..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 699999999999999999998765
No 302
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.43 E-value=0.25 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+||.|+|||+|++.++.+.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 6778999999999999999998653
No 303
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.42 E-value=0.16 Score=48.51 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=26.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccccEEecC
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTG 401 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr~~~~~g 401 (621)
..|.|.|+||+|||++++.+++.+.-..+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 36899999999999999999997665555443
No 304
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.38 E-value=0.24 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 577899999999999999999864
No 305
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.36 E-value=0.12 Score=47.55 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.2
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999988754
No 306
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.36 E-value=0.14 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.4
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999998764
No 307
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.35 E-value=0.12 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+..-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999988743
No 308
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.34 E-value=0.14 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
+.|+|+|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.31 E-value=0.096 Score=50.76 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=15.1
Q ss_pred cEEEeCCCCcchhHHHHHHH-hhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIE-RLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia-~~~pr 395 (621)
-+.|+||+|+|||++++.++ ...|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 47789999999999999999 88654
No 310
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.28 E-value=0.12 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 58999999999999999998765
No 311
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.24 E-value=0.17 Score=53.48 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 688999999999999999998864
No 312
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.21 E-value=0.25 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 578899999999999999999865
No 313
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.16 E-value=0.095 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=10.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|++|+|||+|++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999988764
No 314
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.16 E-value=0.15 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999998864
No 315
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.12 E-value=0.13 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 358999999999999999998764
No 316
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.06 E-value=0.13 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.91 E-value=0.15 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+||+|+|||+|++.++.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 67889999999999999999986
No 318
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.88 E-value=0.16 Score=47.76 Aligned_cols=24 Identities=42% Similarity=0.492 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|+||+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988753
No 319
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.84 E-value=0.14 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++||+|+|||++++.++...+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 689999999999999999998754
No 320
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.83 E-value=0.15 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.6
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 459999999999999999988643
No 321
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.83 E-value=0.14 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|+||+|||+|++.+..-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 322
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.82 E-value=0.24 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 678899999999999999999864
No 323
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.81 E-value=0.19 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-+.|+|+||+|||+|++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998875
No 324
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.73 E-value=0.16 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=19.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988643
No 325
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.69 E-value=0.14 Score=47.32 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+..-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998743
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.68 E-value=0.18 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|.|+.|+|||+|++.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 578899999999999999998753
No 327
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.63 E-value=0.12 Score=47.51 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998754
No 328
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.63 E-value=0.17 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999988753
No 329
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.63 E-value=0.075 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|.++|++|+|||++++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998864
No 330
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.58 E-value=0.15 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+++|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 331
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.56 E-value=0.14 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.+.|+++|+||+|||+|++.+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998753
No 332
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.56 E-value=0.15 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.2
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+|+++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999988655
No 333
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.55 E-value=0.15 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 334
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.53 E-value=0.25 Score=50.43 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=30.9
Q ss_pred ccCceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 343 VPGDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 343 ~~G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.+|....+.+|-..+..+. -+.|+|+.|+|||+|++.++.+.+.
T Consensus 63 y~~~~~vL~~isl~i~~Ge---------~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 63 YADGRETLQDVSFTVMPGQ---------TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp SSTTCEEEEEEEEEECTTC---------EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred cCCCCceeeeeeEEEcCCC---------EEEEECCCCchHHHHHHHHHcCCCC
Confidence 3343444555544333344 7899999999999999999998653
No 335
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.52 E-value=0.21 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|+.|+|||+|++.++.+.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6789999999999999999998653
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.50 E-value=0.24 Score=51.33 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
-|.++|++|+|||+|++.+++.++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~ii 36 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEII 36 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence 5789999999999999999998874433
No 337
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.47 E-value=0.18 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.-|.|.|+||+|||++++.+++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999865
No 338
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.43 E-value=0.14 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999988643
No 339
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.43 E-value=0.17 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=20.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-+.|+|+.|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999988
No 340
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.42 E-value=0.19 Score=47.58 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988764
No 341
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.35 E-value=0.16 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+.|+++|++|+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988654
No 342
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.34 E-value=0.15 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++++...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 469999999999999999977654
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.25 E-value=0.26 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 678999999999999999998864
No 344
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.25 E-value=0.32 Score=49.68 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=23.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQY 398 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~ 398 (621)
-++++||+|+|||+|+..+++.++..+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 4788999999999999999999775443
No 345
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.24 E-value=0.12 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.6
Q ss_pred cccEEEeCCCCcchhHHHHHHH
Q psy11213 369 NINICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia 390 (621)
.++|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4599999999999999998775
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.18 E-value=0.21 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.572 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 577899999999999999999865
No 347
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.10 E-value=0.18 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 348
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.09 E-value=0.21 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+..-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999999988764
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.08 E-value=0.27 Score=50.37 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=23.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccE
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQ 397 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~ 397 (621)
-|+++||+|+|||+|+..+++.++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 478899999999999999999877543
No 350
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.07 E-value=0.18 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 58999999999999999998654
No 351
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.06 E-value=0.19 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-|+|+|+||+|||++++.+++.+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999998764
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.05 E-value=0.15 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||++++.++..++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999998753
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.03 E-value=0.18 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.-+.|+|++|+|||+|++.++.+++.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCchHHHHHHHHHhhccc
Confidence 36788999999999999999998754
No 354
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.00 E-value=0.18 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988764
No 355
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.98 E-value=0.18 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.8
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
-+++.|+||+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999776644
No 356
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.96 E-value=0.18 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+..-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999888754
No 357
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.92 E-value=0.18 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+..-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 358
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.92 E-value=0.17 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.3
Q ss_pred cccEEEeCCCCcchhHHHHHHHh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.++|+++|++|+|||+|++.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999998753
No 359
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.82 E-value=0.18 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
++|+++|++|+|||+|++.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999998864
No 360
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.76 E-value=0.22 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.4
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
|.++|++.|+||+|||+++-.++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 5679999999999999997776655
No 361
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.75 E-value=0.19 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999988764
No 362
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.74 E-value=0.22 Score=47.65 Aligned_cols=23 Identities=48% Similarity=0.719 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999998765
No 363
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.64 E-value=0.15 Score=47.20 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=20.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999887654
No 364
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.59 E-value=0.19 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-++|+|+||+|||+|++.++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46788999999999999988774
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.56 E-value=0.37 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.+.|+|+.|+|||+|++.++.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999876
No 366
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.44 E-value=0.32 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 688999999999999999998854
No 367
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.40 E-value=0.21 Score=54.74 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=23.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
+++++|++|+|||+++++++...+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 7999999999999999999998764
No 368
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.28 E-value=0.24 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
+.|+|+|+||+|||+|+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 369
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.27 E-value=0.23 Score=46.02 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=20.7
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+|+++|++|+|||+|+..+...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988654
No 370
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.20 E-value=0.24 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+|+|+||+|||+|+.++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 48999999999999999998764
No 371
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.09 E-value=0.25 Score=50.36 Aligned_cols=28 Identities=25% Similarity=0.119 Sum_probs=23.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.+++.|++|+|||+|++.+++..+ .+|.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 899999999999999999988764 3443
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.07 E-value=0.25 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++...+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999999864
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.99 E-value=0.25 Score=47.76 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.4
Q ss_pred cEEEeCCCCcchhHHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia 390 (621)
-+++.|+||+|||+|+-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 67889999999999987754
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.99 E-value=0.2 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.++++|++|+|||+|++.++...+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 8999999999999999999998653
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.99 E-value=0.25 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-.+|+|+.|+|||+|++++.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457899999999999999988754
No 376
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.97 E-value=0.12 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+.|+|++|+|||+|++.++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999987654
No 377
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.93 E-value=0.21 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.3
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-++|+|+||+|||+|++.++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988654
No 378
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.93 E-value=0.24 Score=47.55 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
...|+++|++|+|||+|+.++...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988654
No 379
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.92 E-value=0.22 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++.|+|++|+|||+|++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999887
No 380
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.81 E-value=0.28 Score=47.24 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=19.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|+|+|++|+|||+|+..+..-
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 47999999999999999887643
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.75 E-value=0.52 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|+.|+|||+|++.++.+.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 6789999999999999999998653
No 382
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.68 E-value=0.19 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHh
Q psy11213 370 INICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
..|+++|+||+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998864
No 383
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.61 E-value=0.23 Score=50.66 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+++.|++|+|||+|++.+++.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999987653
No 384
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.61 E-value=0.13 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=5.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+..+...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999887644
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.59 E-value=0.23 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++|++|+|||++++.++...+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 799999999999999999998754
No 386
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.47 E-value=0.28 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|.|+|+||+|||+|+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999764
No 387
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.43 E-value=1 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.|+|.||+|||+|+.++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998754
No 388
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.43 E-value=0.38 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998764
No 389
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.39 E-value=0.18 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.7
Q ss_pred cccEEEeCCCCcchhHHHHHHH
Q psy11213 369 NINICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia 390 (621)
.++|+++|++|+|||+|+.++.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999998874
No 390
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.37 E-value=0.27 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+||.|+|||+|++.++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 577899999999999999998864
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.35 E-value=0.26 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.++++|++|+|||+|++.++...+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 8999999999999999999988653
No 392
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.34 E-value=0.86 Score=43.03 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=16.1
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+++|++|+|||+.+-.++..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 567999999999766655544
No 393
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.23 E-value=0.22 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+|+|++|+|||+|++.+...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999997653
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.16 E-value=0.27 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.|.|+||+|||++++.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999953
No 395
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.05 E-value=0.28 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||++++.++...+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 678899999999999999998854
No 396
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.96 E-value=0.3 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 678999999999999999998865
No 397
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=86.94 E-value=0.63 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|.|+|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998765
No 398
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.88 E-value=0.27 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578899999999999999999754
No 399
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.85 E-value=0.31 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++||+|+|||++++.+....+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 689999999999999999988764
No 400
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.85 E-value=0.62 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998765
No 401
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.79 E-value=0.39 Score=50.91 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=17.9
Q ss_pred cEEEeCCCCcchhHHHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia 390 (621)
-++|+|+||+|||+|++.++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58899999999999999664
No 402
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.78 E-value=0.28 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
++|.|+|++|+|||+|++.++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999998764
No 403
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.70 E-value=0.3 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-|.++|++|+|||+|++.++..++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5788999999999999999998754
No 404
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.66 E-value=0.4 Score=40.43 Aligned_cols=31 Identities=19% Similarity=0.513 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCCeeeecccccccCCCCCCCCccccCC
Q psy11213 254 MTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVN 291 (621)
Q Consensus 254 ~~~~~f~C~~Cg~~~~~~~~~~~~~~~~~Cp~~~C~~~ 291 (621)
+...-|+|.+||+.+ ......|..||. |++.
T Consensus 63 L~v~p~~C~~CG~~F-----~~~~~kPsrCP~--CkSe 93 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVF-----KAEINIPSRCPK--CKSE 93 (105)
T ss_dssp EEECCCBBTTTCCBC-----CCCSSCCSSCSS--SCCC
T ss_pred EEEECcChhhCcCee-----cccCCCCCCCcC--CCCC
Confidence 344459999999875 234456788996 9854
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.65 E-value=1 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEeCCCCcchhHHHHHHHhhc
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
+.|.|+.|+|||+|++.+....
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5789999999999999999874
No 406
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.65 E-value=0.34 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..|+|+|.||+|||++++.+++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998764
No 407
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.57 E-value=0.33 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|.|++|+|||++++.++.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999998864
No 408
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.51 E-value=0.34 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.-+||.|++|+|||+++..+.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 347999999999999999888774
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.48 E-value=0.31 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||++++.++..++
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998854
No 410
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.47 E-value=0.29 Score=51.07 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc----ccEEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR----RSQYTTGRG 403 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p----r~~~~~g~~ 403 (621)
-++|+||||+|||+|+..++..+. +..|.++..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 588999999999999999887642 234655543
No 411
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=86.46 E-value=1.1 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-|.++|.||+|||+|+.++...
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999998754
No 412
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.40 E-value=0.3 Score=51.50 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.++++|++|+|||+|++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 88999999999999999988764
No 413
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.25 E-value=0.15 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.++|+++|++|+|||+|+.++..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999987764
No 414
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.16 E-value=0.32 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|+++|++|+|||+|+..++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998766
No 415
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=86.14 E-value=0.3 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.6
Q ss_pred cccEEEeCCCCcchhHHHHHHH
Q psy11213 369 NINICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia 390 (621)
.++|+++|.||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4699999999999999998864
No 416
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.07 E-value=0.37 Score=47.04 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=23.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
.+-|.|+||+|||++++.+++.+.-..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46789999999999999999876544443
No 417
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.94 E-value=1 Score=43.53 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=44.6
Q ss_pred CcccEEEeCCCCcchhH-HHHHHHhhccc----cEEecC--------CCCccccceEEEe-ecCcccceeeeccceeecC
Q psy11213 368 GNINICLMGDPGVAKSQ-LLSYIERLARR----SQYTTG--------RGSSGVGLTAAVM-KDPITNEMVLEGGALVLAD 433 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~-ll~~ia~~~pr----~~~~~g--------~~~s~~gLta~~~-~~~~~g~~~l~~GalvlAd 433 (621)
|.++ +++|+.|+|||+ |++.+.+...+ .++... .-.|..|+..... .+..+.-+. .+..+
T Consensus 28 G~I~-vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~-----~i~~~ 101 (219)
T 3e2i_A 28 GWIE-CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMT-----HDLTN 101 (219)
T ss_dssp CEEE-EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGG-----SCCTT
T ss_pred ceEE-EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHH-----HHhcC
Confidence 4444 568999999999 66776554221 122221 1223333332211 111111010 01124
Q ss_pred CCeeEecCCCCCChhhhhhhHhhhcce
Q psy11213 434 QGICCIDEFDKLPDADRTAIHEVMEQQ 460 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~eame~q 460 (621)
--+++|||+.-++++.-..+.++.+.+
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCC
Confidence 469999999999887666666655443
No 418
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.78 E-value=0.33 Score=50.07 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||++++.++...+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998754
No 419
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=85.77 E-value=0.35 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.|+|+|+||+|||+|+..+..-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999987554
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.59 E-value=0.43 Score=50.50 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
-|.+.||+|+|||+|+..+++.++..+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 47899999999999999999988765544
No 421
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.50 E-value=0.38 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998875
No 422
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.47 E-value=0.37 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..++++|.+|+|||+|+..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999987663
No 423
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.59 E-value=0.16 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred cccEEEeCCCCcchhHHHHHHHh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
.++|+++|+||+|||+|++.+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 46999999999999999987754
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.26 E-value=0.23 Score=46.09 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.++|++|+|||+|++.++..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999998653
No 425
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.20 E-value=0.39 Score=44.69 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.++|++|+|||+|++.+...++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999887653
No 426
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=85.12 E-value=0.3 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.0
Q ss_pred cccEEEeCCCCcchhHHHHH-HHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSY-IERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~-ia~~ 392 (621)
.++|+++|++|+|||+|++. +...
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35899999999999999998 4433
No 427
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.08 E-value=0.48 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.-+.|+|+||+|||+|++.++...
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999998774
No 428
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.02 E-value=0.26 Score=46.87 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+.|+++|++|+|||+|+..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999988654
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.96 E-value=0.53 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..|.+.|.+|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999875
No 430
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=84.88 E-value=0.4 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578899999999999999987753
No 431
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.86 E-value=0.54 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=19.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-++++|+||+|||+|+..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 432
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.83 E-value=0.45 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=19.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-++++|+||+|||+|+..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998775
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.79 E-value=0.5 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=21.8
Q ss_pred cccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
...|.|+|+||+|||+|++.+....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998753
No 434
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.71 E-value=0.31 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.3
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
..|.|.|.+|+|||++++.+++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999998864
No 435
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=84.68 E-value=0.47 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.+.|+|+||+|||+|++.+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999765
No 436
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.45 E-value=0.52 Score=43.71 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=20.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.++|++|+|||+|+..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 367999999999999999887753
No 437
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.37 E-value=0.44 Score=49.74 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++|+|+.|+|||++++.++..++
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Confidence 688999999999999999998854
No 438
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.35 E-value=0.43 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.9
Q ss_pred EEEeCCCCcchh-HHHHHHHhh
Q psy11213 372 ICLMGDPGVAKS-QLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS-~ll~~ia~~ 392 (621)
.+++|+.|+||| .|++++.+.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 577999999999 888887665
No 439
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.30 E-value=0.48 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++...+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 578999999999999999987643
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.26 E-value=0.55 Score=42.33 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=19.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-.+++||.|+|||+|+.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999997653
No 441
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.13 E-value=0.42 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-++++|+||+|||+|+..++..
T Consensus 109 i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHH
Confidence 6889999999999999998765
No 442
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.04 E-value=0.44 Score=49.52 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-++++|+||+|||+|+..++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998887754
No 443
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=83.91 E-value=0.5 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.|.|+|+||+|||+|++++...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999865
No 444
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=83.90 E-value=0.95 Score=48.36 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|.++|+||+|||+|+.++...
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999998754
No 445
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.89 E-value=0.4 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.9
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|+.|+|||+|+|.++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 688899999999999999999864
No 446
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.69 E-value=0.53 Score=51.71 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=25.0
Q ss_pred cEEEeCCCCcchhHHHHH--HHhhcc---ccEEecCCC
Q psy11213 371 NICLMGDPGVAKSQLLSY--IERLAR---RSQYTTGRG 403 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~--ia~~~p---r~~~~~g~~ 403 (621)
.++|+|++|+|||+|++. ++.+.+ ..+|..|..
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 688999999999999999 455544 345666654
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.64 E-value=0.54 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-++++|++|+|||+++..++..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 57899999999999999998875
No 448
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.53 E-value=0.49 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-++|+|++|+|||+|++.++..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 68899999999999999999875
No 449
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.47 E-value=0.47 Score=47.06 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|++|+|||+|+..+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998754
No 450
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.27 E-value=0.59 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-+.|+|++|+|||+|++.++ ..+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 57889999999999999999 643
No 451
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=83.08 E-value=0.54 Score=53.02 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.2
Q ss_pred cEEEeCCCCcchhHHHHH
Q psy11213 371 NICLMGDPGVAKSQLLSY 388 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ 388 (621)
-.|+.||||||||+.+-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHH
Confidence 468899999999975433
No 452
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.97 E-value=0.7 Score=47.98 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|++|+|||+|++.++.....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6789999999999999999998643
No 453
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.94 E-value=0.56 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.547 Sum_probs=21.8
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++.+.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 788999999999999999998754
No 454
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.92 E-value=0.41 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|++|+|||+|++.++..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 688999999999999999999864
No 455
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.74 E-value=0.62 Score=47.54 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=18.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
=+++.|+||+|||+|+..++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788999999999999887754
No 456
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.73 E-value=0.5 Score=48.43 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=22.6
Q ss_pred EEEeCCCCcchhHHHHHHHhhc------cccEEecCCCC
Q psy11213 372 ICLMGDPGVAKSQLLSYIERLA------RRSQYTTGRGS 404 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~~------pr~~~~~g~~~ 404 (621)
+++.||||+|||+|+-.++..+ .+..|.++..+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 8999999999999966554332 23456655443
No 457
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.60 E-value=0.55 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|++.+...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999997543
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.55 E-value=0.55 Score=44.04 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=19.0
Q ss_pred EEEeCCCCcchhHHHHHHHhh
Q psy11213 372 ICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 372 vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+|++|++|+|||++++.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998755
No 459
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.35 E-value=0.69 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-|++++|++|+|||++++.+...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 39999999999999999998765
No 460
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=81.99 E-value=0.79 Score=53.86 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=18.6
Q ss_pred cEEEeCCCCcchhHHHHHHHh
Q psy11213 371 NICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~ 391 (621)
-++|+||.|.|||+++|.++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999843
No 461
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.99 E-value=1.4 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.9
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+++|.++|+||+|||+|+.++...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 462
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=81.96 E-value=0.59 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..++++|+||+|||+|+..++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998765
No 463
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=81.91 E-value=1.6 Score=49.48 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=19.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
+++++||+|+|||..+-......+.++|.
T Consensus 157 ~vlv~apTGSGKT~~al~~l~~~~~gl~l 185 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQKYFSAKSGVYC 185 (677)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEE
Confidence 89999999999998543322223444443
No 464
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=81.85 E-value=0.75 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+.|+|.||+|||+|+.++...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999874
No 465
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=81.84 E-value=0.2 Score=46.88 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.5
Q ss_pred ccEEEeCCCCcchhHHHHHHH
Q psy11213 370 INICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia 390 (621)
++|+++|++|+|||+|++.+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSB
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999987654
No 466
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=81.84 E-value=0.61 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
++|+++|++|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 467
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=81.82 E-value=0.68 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHh--hcccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIER--LARRS 396 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~--~~pr~ 396 (621)
.|.++|++|+|||+|+.++.. .+|+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 789999999999999999988 44543
No 468
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=81.75 E-value=0.57 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..|.++|+||+|||+|+.++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 37999999999999999998754
No 469
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.75 E-value=1.5 Score=46.72 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred ccEEEeCCCCcchhHHH
Q psy11213 370 INICLMGDPGVAKSQLL 386 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll 386 (621)
-++|++||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 38999999999999864
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.74 E-value=0.73 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.8
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.-|.+.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999988754
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.69 E-value=0.6 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.++++|++|+|||+++..++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987753
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.68 E-value=0.81 Score=49.09 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|++|+|||+|++.++...+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 6889999999999999999998654
No 473
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=81.47 E-value=0.63 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=20.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++++|.||+|||+|+..+...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred heEEeCCCCCCHHHHHHHHhcc
Confidence 8999999999999999998754
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.43 E-value=0.57 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-++|.|+||+|||+|++.++...+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987754
No 475
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=81.33 E-value=0.77 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.6
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
+.+.|+|.||+|||+|++++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999876
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.23 E-value=0.62 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|.+.|++|+|||++++.+++.++
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988864
No 477
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=81.22 E-value=0.77 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-+++.|+||+|||+|+..++..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999887754
No 478
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=81.17 E-value=2.7 Score=40.35 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.1
Q ss_pred CCeeEecCCCCCChhhhhhhHh
Q psy11213 434 QGICCIDEFDKLPDADRTAIHE 455 (621)
Q Consensus 434 ~gi~~IDEidk~~~~~~~~L~e 455 (621)
-.+++|||+.-++++....|.+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~ 123 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQV 123 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHH
T ss_pred CCEEEEECcccCCHHHHHHHHH
Confidence 4699999999987765544433
No 479
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=81.10 E-value=0.7 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+.++++|.||+|||+|+.++...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CceEEEEecCCCchHHHHHHHhcC
Confidence 358999999999999999988753
No 480
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=81.01 E-value=0.93 Score=43.02 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=25.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccccEEe
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARRSQYT 399 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr~~~~ 399 (621)
-|.|.|++|+|||++++.+|+.+....+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999987766553
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.95 E-value=0.47 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
-|.|.|++|+|||++++.+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998755
No 482
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=80.91 E-value=0.75 Score=48.97 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+||+|||+|++.++...|
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Confidence 688999999999999999987754
No 483
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.90 E-value=2.6 Score=46.53 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=17.3
Q ss_pred ccEEEeCCCCcchhHHHHHHH
Q psy11213 370 INICLMGDPGVAKSQLLSYIE 390 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia 390 (621)
-++|+++++|+|||..+-.++
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~ 219 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQIS 219 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHH
Confidence 479999999999999765544
No 484
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=80.76 E-value=0.96 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
.|+|+|.||+|||++++.+++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 485
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=80.64 E-value=0.62 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
-+.|.|+.|+|||++++.++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6789999999999999999877
No 486
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=80.45 E-value=0.77 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..++.||||||||+++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999987665443
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.42 E-value=1.2 Score=49.65 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
.+.++|+.|+|||+|++.++...+.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC
Confidence 7899999999999999999988653
No 488
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=80.41 E-value=2 Score=46.08 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.4
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++.++|+||+|||+|+.++...
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceeEEecCCCCCHHHHHHHHhCC
Confidence 48999999999999999998743
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=80.15 E-value=1.2 Score=49.39 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.1
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 789999999999999999998864
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=80.14 E-value=0.95 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
..|.++|.||+|||+|+..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987664
No 491
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=80.06 E-value=0.81 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=23.0
Q ss_pred ccEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 370 INICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+|.|.|.+|+|||++++.+++.+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999999975
No 492
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.98 E-value=0.96 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred cEEEeCCCCcchhHHHHHHHhh
Q psy11213 371 NICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+|++|+|||+|++.++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 7899999999999999987654
No 493
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=79.95 E-value=2.2 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.5
Q ss_pred CcccEEEeCCCCcchhHHHHHHHhh
Q psy11213 368 GNINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 368 g~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.+++|.|+|+||+|||+|+.++...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999987654
No 494
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=79.87 E-value=0.81 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred cccEEEeCCCCcchhHHHHHHHhh
Q psy11213 369 NINICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 369 ~i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
.++|+++|+||+|||+|+..+..-
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 468999999999999999887653
No 495
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=79.76 E-value=0.82 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred ccEEEeCCCCcchhHHHHHHHhh
Q psy11213 370 INICLMGDPGVAKSQLLSYIERL 392 (621)
Q Consensus 370 i~vLL~G~PGtGKS~ll~~ia~~ 392 (621)
..+.|+|+||+|||+|++.+...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37899999999999999999874
No 496
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.60 E-value=1.4 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.0
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.|+|+.|+|||+|++.++...+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 788999999999999999998864
No 497
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=79.55 E-value=0.35 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=19.4
Q ss_pred cEEEeCCCCcchhHHHHHHHhhc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLA 393 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~ 393 (621)
-+.|+|++|+|||+|++.++...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68899999999999999987653
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.50 E-value=1.5 Score=51.64 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.1
Q ss_pred CceEEEeeeeeccccCCceeeecCcccEEEeCCCCcchhHHHHHHHh
Q psy11213 345 GDHVSVSGIFLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIER 391 (621)
Q Consensus 345 G~~v~v~Gil~~~~~~~~~~~~~g~i~vLL~G~PGtGKS~ll~~ia~ 391 (621)
|++..+.++-..+..+. .+.|+|+.|+|||+|++.++.
T Consensus 446 g~~~iL~~vsl~I~~Ge---------~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRAR---------RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTEEEEEEEEEEEETTC---------EEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEeEecceEEEcCCC---------EEEEECCCCCCHHHHHHHHhC
Confidence 44444555543333343 689999999999999999984
No 499
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.49 E-value=0.94 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.2
Q ss_pred cEEEeCCCCcchhHHHHHHHhhccc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLARR 395 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~pr 395 (621)
-+.|+|+.|+|||+|++.++.+.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6789999999999999999998643
No 500
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=79.48 E-value=1.2 Score=49.51 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.7
Q ss_pred cEEEeCCCCcchhHHHHHHHhhcc
Q psy11213 371 NICLMGDPGVAKSQLLSYIERLAR 394 (621)
Q Consensus 371 ~vLL~G~PGtGKS~ll~~ia~~~p 394 (621)
.+.++||.|+|||+|++.++...+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 788999999999999999988754
Done!