RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11213
(621 letters)
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 407 bits (1049), Expect = e-136
Identities = 140/257 (54%), Positives = 179/257 (69%), Gaps = 5/257 (1%)
Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
G+INI L GDPG AKSQLL Y+E+ A R+ YTTG+GSS VGLTAAV +DP T E LE G
Sbjct: 235 GDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAG 294
Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
ALVLAD G+CCIDEFDK+ D+DRTAIHE MEQQTISIAKAGI T LNAR S+LAAANP
Sbjct: 295 ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354
Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTEL- 546
GRY+PK + E+NI LPA +LSRFDLL+++ D+ D + D +LA+H+ +H++S E
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF 414
Query: 547 -KPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMS--YTSARNLL 602
P+ +R+YI + K P + + +VKAY +LRK + S + R L
Sbjct: 415 EPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQLE 474
Query: 603 AILRLSTALARLRLCDE 619
+I+RLS A A++RL D
Sbjct: 475 SIIRLSEAHAKMRLSDV 491
Score = 172 bits (439), Expect = 4e-47
Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 222 KPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTPLL 281
KP+ IRE++A H+GKLV + G+VTR++ V+P + A++TC+ CGA I S T
Sbjct: 1 KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPT 60
Query: 282 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENTRQ 341
+CP +CQ R S F+ FQ++K+QE ++VPVG +PR + V+ G+ +
Sbjct: 61 VCPPRECQSPTP--FSLNHER-STFIDFQKIKLQESPEEVPVGQLPRSVDVILDGDLVDK 117
Query: 342 VVPGDHVSVSGIFLPLLRTGFRQVTQGN 369
PGD V V+GI+ + GF+ T
Sbjct: 118 AKPGDRVEVTGIYRNVP-YGFKLNTVKG 144
>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 399 bits (1028), Expect = e-136
Identities = 139/254 (54%), Positives = 181/254 (71%), Gaps = 2/254 (0%)
Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
G+IN+ L+GDPG AKSQLL Y+ +LA R+ YT+G+GSS GLTAAV++DP T E LE G
Sbjct: 56 GDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAG 115
Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
ALVLAD G+CCIDEFDK+ + DR AIHE MEQQTISIAKAGI+ LNAR S+LAAANP +
Sbjct: 116 ALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIF 175
Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELK 547
GRY+PK+S+ +NI LP LLSRFDL++++ DKPD + D +LA+HI +H+ S + E +
Sbjct: 176 GRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHIVDLHRASDEEEIETE 235
Query: 548 P-IDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAIL 605
ID L+R+YI + P + E +V Y ELRK + SR + R L +++
Sbjct: 236 DEIDPELLRKYIAYARENIKPKLSDEAREKLVNWYVELRKESEGSRGSIPITVRQLESLI 295
Query: 606 RLSTALARLRLCDE 619
RLS A ARLRL +E
Sbjct: 296 RLSEAHARLRLSEE 309
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 329 bits (846), Expect = e-104
Identities = 131/261 (50%), Positives = 174/261 (66%), Gaps = 10/261 (3%)
Query: 368 GNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGG 427
G+I+I L+GDPG AKSQLL Y+ +LA R YT+G+GSS GLTAAV++D +T E VLE G
Sbjct: 318 GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAG 377
Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
ALVLAD G+CCIDEFDK+ + DR AIHE MEQQTISIAKAGI LNAR S+LAAANP +
Sbjct: 378 ALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKF 437
Query: 488 GRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELK 547
GRY+PK+++ +NI LPA LLSRFDL+++++D PD + D ++A+HI H+ T
Sbjct: 438 GRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL 497
Query: 548 P-------IDMSLVRRYIDLCKGKN-PTVPSSLTEHIVKAYTELRK-VARNSRDMSY-TS 597
D L+R+YI + P + E + Y E+RK A + +
Sbjct: 498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPIT 557
Query: 598 ARNLLAILRLSTALARLRLCD 618
AR L +I+RL+ A A++RL D
Sbjct: 558 ARQLESIIRLAEAHAKMRLSD 578
Score = 159 bits (403), Expect = 3e-41
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 44/257 (17%)
Query: 100 DKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFE 159
+D + + L K+ +R + +DL D+EE++ +LA + N + +F + + E
Sbjct: 12 KWEDILEYAENIILDKIINRS---LEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDE 68
Query: 160 LLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQDLMRRFEVYFVPPS 219
I + +++ ++ V F
Sbjct: 69 -----------------IALLLFPEVDRSL-------------------KKIHVRFKN-- 90
Query: 220 SGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETYQPISSLSFTP 279
IRE+++ HIGKLV+V G+VTR++EV+P + A + C CG E S P
Sbjct: 91 LPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFRVEP 150
Query: 280 LLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRGITVLCRGENT 339
C + G L L R S+F+ FQ++K+QE + VP G +PR I V+ +
Sbjct: 151 PRECENCGK---FGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLV 207
Query: 340 RQVVPGDHVSVSGIFLP 356
V PGD V ++G+
Sbjct: 208 DSVRPGDRVKITGVVRI 224
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 206 bits (526), Expect = 5e-57
Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 49/301 (16%)
Query: 367 QGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAV-MKDPITNEMVLE 425
+G IN+ L GDPG AKSQLL Y L+ RS YT+G+ SS VGLTA++ + +++
Sbjct: 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQ 549
Query: 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485
GA+VLA+ G+CCIDE DK + R +++EVMEQQT++IAKAGI+ L A +ILA+ NP
Sbjct: 550 PGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNP 609
Query: 486 AYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLKLAQHI------------- 532
RYN +++ +NI + +L +RFDL++L+ D D+D D ++ I
Sbjct: 610 INSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG 669
Query: 533 ----TY-------VHKHSRQPPTELKPIDMSLVRRYIDLCKGK-NPTVPSSLTEHIVKAY 580
TY V S + + D+ ++R YI K P + + I + Y
Sbjct: 670 NDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREY 729
Query: 581 TELRKVARNSRD-----------------------MSYTSARNLLAILRLSTALARLRLC 617
++R+ + + M Y S+R + +I+R+S +LAR+RL
Sbjct: 730 VKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLS 789
Query: 618 D 618
Sbjct: 790 T 790
Score = 31.5 bits (71), Expect = 1.4
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 226 IREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTC---DMCGAETYQP 271
+ ++ + LV G V R T + P +T+A + C G YQP
Sbjct: 218 VGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQP 266
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 60.5 bits (147), Expect = 7e-10
Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 38/258 (14%)
Query: 376 GDPGVAKSQLLSYIERLARRSQYT--------TGRGSSGVGLTAAVMKDPITNEMVLEGG 427
G PGV K+ L LAR S +G A E G
Sbjct: 50 GPPGVGKTLL---ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPG 106
Query: 428 ALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAY 487
L A + I +DE ++ P + A+ E +E++ +++ + RL ++A NP
Sbjct: 107 PLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI-RLPPPFIVIATQNPGE 165
Query: 488 --GRYNPKRSIEQNIQLPAALLSRFDL-LWLIQDKPDRDNDLK-LAQHITYVHKHSRQPP 543
G Y LP ALL RF L +++ D PD + + + + +
Sbjct: 166 YEGTY----------PLPEALLDRFLLRIYV--DYPDSEEEERIILARVG--GVDELDLE 211
Query: 544 TELKPI--DMSLVRRYIDLCKGKNPTVPSSLTEHIVKAYTELRKVARNSRDMSYTSARNL 601
+ +KP+ D L+R ++ K V + ++IV LR+ + S R
Sbjct: 212 SLVKPVLSDEELLRLQKEV---KKVPVSDEVIDYIVTLVAALREAPDVALGA---SPRAS 265
Query: 602 LAILRLSTALARLRLCDE 619
LA+L ALA L D
Sbjct: 266 LALLAALRALALLDGRDA 283
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 52.3 bits (126), Expect = 4e-08
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPI---TNEMVLEGG 427
+ L+G PG KS+L + + + T +K G
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTR--DTTEEDLKGRRNIDPGGASWVDG 58
Query: 428 ALVLADQ--GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAG-IMTRLNARVSILAAAN 484
LV A + I +DE ++ ++ +++++ + + + G ++ ++A N
Sbjct: 59 PLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLIATMN 118
Query: 485 PAYGRYNPKRSIEQNIQLPAALLSRF 510
P N L AL SRF
Sbjct: 119 PLDRGLNE---------LSPALRSRF 135
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 42.4 bits (100), Expect = 5e-04
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 423 VLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAA 482
+ G L A++GI +DE + L D A+ +V + + + GI R AR ++
Sbjct: 134 AFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT 193
Query: 483 ANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512
NP G P+ LL RF L
Sbjct: 194 MNPEEGELRPQ------------LLDRFGL 211
>gnl|CDD|215203 PLN02355, PLN02355, probable galactinol--sucrose
galactosyltransferase 1.
Length = 758
Score = 37.9 bits (88), Expect = 0.018
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 345 GDHVSVSGIFLPLLRTGFRQVTQGN----INICL-MGDPGV 380
D SV +FLP+L FR V QGN + ICL GDP V
Sbjct: 115 EDQSSVYTVFLPILEGDFRAVLQGNEHNELEICLESGDPAV 155
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 36.5 bits (85), Expect = 0.037
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 46 SEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDE-FLIEFVKIDKDDN 104
++KFKE F+K D ++ + L H + IY+ DE FL+ K +
Sbjct: 6 AKKFKELKYPFIKDD------VEFLWEAKSLKHPNESLIYVSFKDEEFLL--QIKKKKNG 57
Query: 105 KIFKYSK--QLSKLAHREQV-AIYIDLDDVEEFNSDLAT-NIQNNTRRYVQMFSELIFEL 160
+ K K + SK+ ++ I+ E F +D+ + N+ N+++ I +
Sbjct: 58 FLIKGDKATRPSKVGILKKALKIF-----SELFCADIISHNLAENSKKLSLK-KPYILD- 110
Query: 161 LPDYKSHDVIAKDPLDIYIE-----HRLLLEQ-RNHPN 192
+ ++ D I+K+ I IE R LL Q +N+PN
Sbjct: 111 IDNFL--DFISKNQEKILIEIGFGSGRHLLYQAKNNPN 146
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 36.1 bits (83), Expect = 0.055
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 427 GALVLADQGICCIDEFDKLPDADR---TAIHEVMEQQTISIAKAGIMTRLNARVSILAAA 483
G + LA G+ +DE LP+ +R A+ E +E I +++ AR ++AA
Sbjct: 288 GEISLAHNGVLFLDE---LPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344
Query: 484 NPA--------YGRYNPKRSIEQNIQLPAALLSRFDL 512
NP+ + R P++++ +L L RFDL
Sbjct: 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDL 381
>gnl|CDD|165863 PLN02219, PLN02219, probable galactinol--sucrose
galactosyltransferase 2.
Length = 775
Score = 35.4 bits (81), Expect = 0.11
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 346 DHVSVSGIFLPLLRTGFRQVTQGN----INICL-MGDPGVAKSQ 384
D ++ +FLPLL FR V QGN I ICL GD V +Q
Sbjct: 112 DAPTIYTVFLPLLEGQFRAVLQGNDKNEIEICLESGDKAVETNQ 155
>gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 35.2 bits (82), Expect = 0.11
Identities = 24/128 (18%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 20 LSFPVADRTTVSVPTLSSIFQLVIYF-SEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAH 78
L V + +S P + SI+++ + + ++++E + ++ + + ++ + + K+ +
Sbjct: 225 LFCNVPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLNAPEPDLSEWKDLVDKIKN 284
Query: 79 REQ---VAI---YIDLDDEFL--IEFVKIDKDDNKIFKYSKQLSKLAHREQVAI-YIDLD 129
++ +A+ Y++L D + IE +K + +A +V I +ID +
Sbjct: 285 PKKEVTIALVGKYVELPDAYKSVIEALK--------------HAGIALGVKVNIKWIDSE 330
Query: 130 DVEEFNSD 137
D+EE N+
Sbjct: 331 DLEEENAA 338
>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular
activities (AAA). This Pfam entry includes some of the
AAA proteins not detected by the pfam00004 model.
Length = 131
Score = 32.9 bits (76), Expect = 0.16
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 374 LMGDPGVAKSQLLSYIERL----ARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGA- 428
L G PG+AK+ L + R RR Q+T S + T + D T E G
Sbjct: 4 LEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDI--TGTEVYDQKTREFEFRPGPI 61
Query: 429 ---LVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485
++LAD E ++ P ++A+ E M+++ ++I G L +LA NP
Sbjct: 62 FANVLLAD-------EINRAPPKTQSALLEAMQERQVTI--GGETHPLPEPFFVLATQNP 112
Query: 486 AYGRYNPKRSIEQ--NIQLPAALLSRF 510
IEQ LP A L RF
Sbjct: 113 ----------IEQEGTYPLPEAQLDRF 129
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 32.7 bits (74), Expect = 0.23
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 29/153 (18%)
Query: 371 NICLMGDPGVAKSQLLSYIERLARRSQ----YTTGRGSSGVGLTAAVMKDPITNEMVLEG 426
I ++G PG K+ L + R Y G L ++ + G
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 427 G-----ALVLADQ---GICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVS 478
AL LA + + +DE L DA++ + + ++ + ++
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQE-----ALLLLLEELRLLLLLKSEKNLT 118
Query: 479 ILAAANPAYGRYNPKRSIEQNIQLPAALLSRFD 511
++ N + PA L RFD
Sbjct: 119 VILTTND------------EKDLGPALLRRRFD 139
>gnl|CDD|233606 TIGR01866, cas_Csn2, CRISPR type II-A/NMEMI-associated protein
Csn2. CRISPR loci appear to be mobile elements with a
wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas loci. The species range so far for
this subtype is animal pathogens and commensals only.
This protein is present in some but not all NMENI
CRISPR/Cas loci [Mobile and extrachromosomal element
functions, Other].
Length = 222
Score = 33.0 bits (76), Expect = 0.31
Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 37 SIFQLVIYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEF 96
+ LVI + +++ ++E D K S+ ++ + + + D+
Sbjct: 17 KVTVLVIENPKVYRKIILELYSQKNGDEGKIKLSDDDKEVDIEKNIDLITDV-------- 68
Query: 97 VKIDKDDNKIF-KYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSE 155
+ ID +D KI K K+L +L E++ I + + L I+ + + +
Sbjct: 69 LNIDINDKKILKKIYKKLEELITDEELRNKII-----DLVAQLVELIEE-----LLLELD 118
Query: 156 LIFELLPD 163
L E+ +
Sbjct: 119 LPLEVNDE 126
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 33.7 bits (77), Expect = 0.34
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 427 GALVLADQGICCIDEFDKLPDADRT---AIHEVMEQQTISIAKAGIMTRLNARVSILAAA 483
G + LA G+ +DE LP+ R+ A+ E +E +ISI++A AR ++AA
Sbjct: 289 GEISLAHNGVLFLDE---LPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAM 345
Query: 484 NPA-----YGRYNPKRSIEQNI-----QLPAALLSRFDL 512
NP G+ R Q I +L L R DL
Sbjct: 346 NPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDL 384
>gnl|CDD|225210 COG2331, COG2331, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 82
Score = 30.2 bits (68), Expect = 0.56
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 252 PLMTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKF 306
PLM +Y C CG + + +++ PL C ++ K + + +GS F
Sbjct: 6 PLMPTYSYECTECG-NRFDVVQAMTDDPLTTCEECGARLKKLLNAVGIVFKGSGF 59
>gnl|CDD|225822 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 32.7 bits (75), Expect = 0.65
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 24/124 (19%)
Query: 356 PLLRTGFR---QVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLT-A 411
P T R +V ++ + L G+ G K E LAR + V + A
Sbjct: 320 PSRATLLRKAERVAATDLPVLLQGETGTGK-------EVLARAIHQNSEAAGPFVAVNCA 372
Query: 412 AVMKDPITNEMV--LEG-----------GALVLADQGICCIDEFDKLPDADRTAIHEVME 458
A+ + I +E+ + G G L AD G +DE +P A ++ + V++
Sbjct: 373 AIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQ 432
Query: 459 QQTI 462
+ +
Sbjct: 433 EGVV 436
>gnl|CDD|221344 pfam11964, DUF3478, Protein of unknown function (DUF3478). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria and archaea. Proteins in
this family are typically between 120 to 132 amino acids
in length. This protein has a single completely
conserved residue A that may be functionally important.
Length = 118
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 86 IDLDDEFLIEFV---KIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEF 134
I D+ ++ F K+ +D ++ +KL +V + IDLDD E +
Sbjct: 5 IPTPDDNVLAFKVSGKLTHEDYEVL-IPALEAKLEEHGKVRLLIDLDDFEGW 55
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 30.6 bits (69), Expect = 1.3
Identities = 30/143 (20%), Positives = 44/143 (30%), Gaps = 19/143 (13%)
Query: 371 NICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMK-DPITNEMVLEGGAL 429
N+ L G PG K+ L I R ++ L V+ + L
Sbjct: 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA 80
Query: 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGR 489
A G+ IDE D L + A+ V+E + V ++ A N
Sbjct: 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-------DLRIDRENVRVIGATNRPL-- 131
Query: 490 YNPKRSIEQNIQLPAALLSRFDL 512
L AL R D+
Sbjct: 132 ---------LGDLDRALYDRLDI 145
>gnl|CDD|132170 TIGR03126, one_C_fae, formaldehyde-activating enzyme. This family
consists of formaldehyde-activating enzyme, or the
corresponding domain of longer, bifunctional proteins.
It links formaldehyde to the C1 carrier
tetrahydromethanopterin (H4MPT), an analog of
tetrahydrofolate, and is common among species with
H4MPT. The ribulose monophosphate (RuMP) pathway, which
removes the toxic metabolite formaldehyde by
assimilation, runs in the opposite direction in some
species to produce ribulose 5-phosphate for nucleotide
biosynthesis, leaving formaldehyde as an additional
metabolite. In these species, formaldehyde activating
enzyme may occur as a fusion protein with D-arabino
3-hexulose 6-phosphate formaldehyde lyase from the RuMP
pathway.
Length = 160
Score = 30.8 bits (70), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 89 DDEFLIEFVKID---KDDNKIFKYSKQLSKLAHREQVAIYIDLDDV 131
DD +I V I KDD KI+KY+ + +KLA + + +D+V
Sbjct: 104 DDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRAMEGEPSVDEV 149
>gnl|CDD|234537 TIGR04313, aro_clust_Mycop, aromatic cluster surface protein.
Members of this family are absolutely restricted to the
Mollicutes (Mycoplasma and Ureaplasma). All have a
signal peptide, usually of the lipoprotein type,
suggesting surface expression. Most members have lengths
of about 280 residues but some members have a nearly
full-length duplication. The mostly nearly invariant
residue, a Trp,is part of a strongly conserved 9-residue
motif, [ND]-W-[LY]-[WF]-X-[LF]-X-N-[LI], where X usually
is hydrophobic. Because the hydrophobic six-residue core
of this motif almost always contains three to four
aromatic residues, we name this family aromatic cluster
surface protein. Multiple paralogs may occur in a given
Mycoplasma, usually clustered on the genome.
Length = 297
Score = 31.2 bits (71), Expect = 1.5
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 45 FSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKL----AHREQVAIYIDLDDEFLIEFVKID 100
++ FL +F+K NK K A +Y+ D F+ I
Sbjct: 165 DAKHNSLFLGKFLKKKPKSNKFIDNYIDKLKNGEESAESNNYNVYLLNKDNFIFRI-NIS 223
Query: 101 KDDNK-----IFKYSKQLSKL 116
KD+NK IF Y KL
Sbjct: 224 KDENKKTEVKIFPYIYIYPKL 244
>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 31.4 bits (72), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 427 GALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANP 485
G + LA G+ +DE + + A+ E +E I I++AG AR ++AA NP
Sbjct: 277 GEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNP 335
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 30.6 bits (70), Expect = 1.8
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 427 GALVLADQGICCIDEFDKLPDADRTAI---HEVMEQQTISIAKAGIMTRLNARVSILAAA 483
G + LA G+ +DE LP+ R + + +E I+I++A AR ++AA
Sbjct: 100 GEISLAHNGVLFLDE---LPEFSRRVLESLRQPLEDGEITISRARAKVTFPARFQLVAAM 156
Query: 484 NP---AYGRYNPKRSI--EQNIQ-----LPAALLSRFDL 512
NP Y KR + I+ L LL R DL
Sbjct: 157 NPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDL 195
>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated.
Length = 313
Score = 30.4 bits (69), Expect = 2.7
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 30/118 (25%)
Query: 46 SEKFKEF---LIEFVK--IDKDDNKIFKYSEQLSKLAHREQ------------VAIYIDL 88
+ K +E +K + N + KY L K + +Y +
Sbjct: 193 DDSLKNIRNMSLEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKET 252
Query: 89 DDEFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNT 146
+E LI + IDK + I S++ S Y L+ + E +D N+ +N
Sbjct: 253 GNEELI--INIDKIE-DIKHISEKFS----------YKKLNKMIEIINDTRDNLSSNV 297
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 30.8 bits (70), Expect = 2.9
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 99 IDKDDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSEL-- 156
+ +DN+ K L+K+ + ++ D E++ D+ I T V+ +
Sbjct: 154 LFAEDNEYLKI---LNKIGNNKEENSNFKFFDFEKWFEDIDEKILKRTNYLVENINIEFP 210
Query: 157 -IFELLPDYKS 166
LPD+ +
Sbjct: 211 KKEFNLPDFDN 221
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 30.8 bits (70), Expect = 2.9
Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 16/161 (9%)
Query: 194 QELRNSQNRYPQDLMRRFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPL 253
Q+LR P D + EV+F + + +V + + G + + P
Sbjct: 1005 QKLRKKAGLEPTDKV---EVFFESLDEVDESALSQVLKSQAQYIRESLGSPLLPSSMMPS 1061
Query: 254 MTVATYTCDMCGAETYQPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQE-- 311
V + E++ +S LSF L P L L + + + E
Sbjct: 1062 HAV------VIAEESFHGVSGLSFKISLARP---ALAFNEDALLALCSGDEELAEGVEAV 1112
Query: 312 LKVQEHSDQVPVGNIPRGITVLCRGENTR-QVVPGDHVSVS 351
L ++HS + I + CR VV G H +S
Sbjct: 1113 LLSRDHS-NLKSEFQAGKIKLSCRENGPEVDVVLGKHFHLS 1152
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 30.0 bits (68), Expect = 4.8
Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 39 FQLVIYFSEKFKEFLIEFVK--IDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEF 96
F +V KF+ +L E + +++D +++ + +L + L
Sbjct: 309 FGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPI 368
Query: 97 VKIDKDDNKIFKYSKQLSKLAHREQVAIYIDL 128
++ + +L ++A R + + +L
Sbjct: 369 YGKPLEEISFGEILDKLFEVARRFPMRLPPEL 400
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 5.2
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 387 SYIERLARRSQYTTGR----GSSGVGLTAAVMK-----DPITNEMVLEGGALVLADQGIC 437
+YIE+++RRS + G+ G G L A++ DP + G AL+LA
Sbjct: 127 AYIEKVSRRSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILA----- 181
Query: 438 CIDEFDKLPDADRTAI 453
+ F K PD +AI
Sbjct: 182 LLLMFAK-PDKSSSAI 196
>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 337
Score = 29.5 bits (66), Expect = 5.2
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 421 EMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL 480
E G L A++GI IDE + L D + +V + + GI R AR ++
Sbjct: 119 VKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLV 178
Query: 481 AAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512
+ NP G P+ LL RF L
Sbjct: 179 GSGNPEEGELRPQ------------LLDRFGL 198
>gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional.
Length = 334
Score = 29.5 bits (66), Expect = 5.6
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 421 EMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNARVSIL 480
E E G L A++G IDE + L D + +V + + + G+ R AR ++
Sbjct: 116 EKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLV 175
Query: 481 AAANPAYGRYNPKRSIEQNIQLPAALLSRFDL 512
+ NP G P+ LL RF L
Sbjct: 176 GSGNPEEGELRPQ------------LLDRFGL 195
>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional.
Length = 307
Score = 29.3 bits (66), Expect = 5.8
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 11/33 (33%)
Query: 289 QVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQV 321
Q NK GG++Y+Q K++E+SD++
Sbjct: 231 QKNKKGGKMYVQD-----------KIEEYSDEI 252
>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes
Rab11a, Rab11b, and Rab25. Rab11a, Rab11b, and Rab25
are closely related, evolutionary conserved Rab proteins
that are differentially expressed. Rab11a is
ubiquitously synthesized, Rab11b is enriched in brain
and heart and Rab25 is only found in epithelia. Rab11/25
proteins seem to regulate recycling pathways from
endosomes to the plasma membrane and to the trans-Golgi
network. Furthermore, Rab11a is thought to function in
the histamine-induced fusion of tubulovesicles
containing H+, K+ ATPase with the plasma membrane in
gastric parietal cells and in insulin-stimulated
insertion of GLUT4 in the plasma membrane of
cardiomyocytes. Overexpression of Rab25 has recently
been observed in ovarian cancer and breast cancer, and
has been correlated with worsened outcomes in both
diseases. In addition, Rab25 overexpression has also
been observed in prostate cancer, transitional cell
carcinoma of the bladder, and invasive breast tumor
cells. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 165
Score = 28.7 bits (65), Expect = 6.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 372 ICLMGDPGVAKSQLLSYIERLAR 394
I L+GD GV KS LLS R R
Sbjct: 6 IVLIGDSGVGKSNLLS---RFTR 25
>gnl|CDD|237842 PRK14868, PRK14868, DNA topoisomerase VI subunit B; Provisional.
Length = 795
Score = 29.4 bits (66), Expect = 6.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 378 PGVAKSQL------LSYIERLARRSQYTTGRGSSGVGLTAAVMKDPIT 419
PG+ K Q+ L Y R R Q RG G+G++AAV+ +T
Sbjct: 91 PGITKEQIPKVFGKLLYGSRFHAREQ---SRGQQGIGISAAVLYSQLT 135
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 28.9 bits (65), Expect = 7.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 387 SYIERLARRSQYTTGR----GSSGVGLTAAVMK-----DPITNEMVLEGGALVLA 432
+YIE+++R S + G+ G G L A++ DP + G AL+L
Sbjct: 122 AYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILM 176
>gnl|CDD|222176 pfam13495, Phage_integr_N2, Phage integrase, N-terminal SAM-like
domain.
Length = 83
Score = 27.1 bits (61), Expect = 8.2
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 554 VRRYIDLCKGKNPTVPSSLTEHIVKAY-TELRKVARNSRDMSYTSARNLLAILR 606
++R++ K+ P LT V+A+ + L R++S ++ L L
Sbjct: 26 IKRFLRFHGKKH---PEELTTEDVEAFLSYL----AVERNVSPSTQNQALNALS 72
>gnl|CDD|233805 TIGR02273, 16S_RimM, 16S rRNA processing protein RimM. This family
consists of the bacterial protein RimM (YfjA, 21K), a
30S ribosomal subunit-binding protein implicated in 16S
ribsomal RNA processing. It has been partially
characterized in Escherichia coli, is found with other
translation-associated genes such as trmD. It is broadly
distributed among bacteria, including some minimal
genomes such the aphid endosymbiont Buchnera aphidicola.
The protein contains a PRC-barrel domain that it shares
with other protein families (pfam05239) and a unique
domain (pfam01782). This model describes the full-length
protein. A member from Arabidopsis (plant) has
additional N-terminal sequence likely to represent a
chloroplast transit peptide [Transcription, RNA
processing].
Length = 165
Score = 28.3 bits (64), Expect = 8.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 41 LVIYFSEKFKEFLIEFVK-----IDKDDNKI 66
LV+ + KE LI FV+ ID + I
Sbjct: 128 LVVRSKKGKKEVLIPFVEEIVKEIDLEKKII 158
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 28.5 bits (64), Expect = 9.0
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 392 LARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDA 448
L R TG GSSG+GL E++LE GA V IC DE ++L A
Sbjct: 6 LEGRVAVVTG-GSSGIGLATV--------ELLLEAGASV----AICGRDE-ERLASA 48
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 28.1 bits (63), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 370 INICLMGDPGVAKSQLLSYIERLARR---SQYTTGR 402
I I ++GDP V KS LL+ + + T R
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTR 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.395
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,849,156
Number of extensions: 3195511
Number of successful extensions: 3289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3266
Number of HSP's successfully gapped: 65
Length of query: 621
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 518
Effective length of database: 6,369,140
Effective search space: 3299214520
Effective search space used: 3299214520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.1 bits)