RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11213
(621 letters)
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 140 bits (354), Expect = 1e-38
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 10/208 (4%)
Query: 153 FSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQN---RYPQDLMR 209
+ + +FE + Y + I D LD+ + L + P ++ + R L +
Sbjct: 19 YKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIE-KPDDVIRAAQQAIRNIDRLRK 77
Query: 210 RFEVYFVPPSSGKPTPIREVKATHIGKLVNVRGVVTRSTEVKPLMTVATYTCDMCGAETY 269
++ P+RE+++ IGK V V G+V ++ E++P + A + C C
Sbjct: 78 NVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHA 137
Query: 270 QPISSLSFTPLLMCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHSDQVPVGNIPRG 329
S+ T +C + L S+F+ Q LK+QE + + G PR
Sbjct: 138 VTQSTNMITEPSLCSECGGR------SFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQ 191
Query: 330 ITVLCRGENTRQVVPGDHVSVSGIFLPL 357
ITV+ + + PGD V V+G +
Sbjct: 192 ITVVLEDDLVDTLTPGDIVRVTGTLRTV 219
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 65.7 bits (159), Expect = 4e-12
Identities = 49/291 (16%), Positives = 85/291 (29%), Gaps = 58/291 (19%)
Query: 365 VTQGNINICLMGDPGVAKSQLLS-----------------------------------YI 389
V G + + GD G KS + I
Sbjct: 24 VDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVI 83
Query: 390 ERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGALVLADQGICCIDEFDKLPDAD 449
+ G V + + E E G L A++G IDE + L D
Sbjct: 84 RKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHI 143
Query: 450 RTAIHEVMEQQTISIAKAGIMTRLNARVSILAAANPAYGRYNPKRSIEQNIQLPAALLSR 509
+ +V + + + G+ R AR ++ + NP + L LL R
Sbjct: 144 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP------------EEGDLRPQLLDR 191
Query: 510 FDLLWLIQDKPDRDNDLKLAQHITYVHKHSRQPPTELKPIDMSLVRRYIDLCKG-KNPTV 568
F L + D + +++ + + E +P DM + + ++ +
Sbjct: 192 FGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA 251
Query: 569 PSSLTEHIVKAYTELRKVARNSRDMSYTSARNLLAILRLSTALARLRLCDE 619
P++ L R L +LR + ALA L
Sbjct: 252 PNTALYDCAALCIALGSD----------GLRGELTLLRSARALAALEGATA 292
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 40.7 bits (95), Expect = 3e-04
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 18/205 (8%)
Query: 363 RQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVM-------K 415
++++ + + G+ GV K + I +L+ RS+ + K
Sbjct: 17 KKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 76
Query: 416 DPITNEMVLEGGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGIMTRLNA 475
T + + G LAD G +DE +L + + V+E + G +
Sbjct: 77 GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEV 134
Query: 476 RVSILAAANPAYGRYNPKRSIEQNIQLPAALLSRFDLLWL-IQDKPDRDNDLKLAQHITY 534
V ILAA N N K +++ + L R ++ + I +R D+ +
Sbjct: 135 NVRILAATN-----RNIKELVKEG-KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFL 188
Query: 535 VHKHSRQ--PPTELKPIDMSLVRRY 557
+ L+ Y
Sbjct: 189 KKFSRKYAKEVEGFTKSAQELLLSY 213
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 36.9 bits (85), Expect = 0.005
Identities = 25/193 (12%), Positives = 54/193 (27%), Gaps = 26/193 (13%)
Query: 371 NICLMGDPGVAKSQLLSYI-ERLARRSQYTTGRGSS----GVGLTAAVMKDPITNEMVLE 425
+ + G K+ L+ + E L + +Y T R + D +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDD------IAR 178
Query: 426 GGALVLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKAGI-MTRLNARVSILAAAN 484
+ + ID + A + + I + ++A+ N
Sbjct: 179 A----MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234
Query: 485 PAYGRYNPKRSIEQNIQLPAALLSRFDLLWLIQDKPDRDNDLK-LAQHITYVHKHSRQPP 543
P S + I SR + L+ D D + + L + + + +
Sbjct: 235 PT--------SNDDKIVELVKEASRSNSTSLV-ISTDVDGEWQVLTRTGEGLQRLTHTLQ 285
Query: 544 TELKPIDMSLVRR 556
T + +
Sbjct: 286 TSYGEHSVLTIHT 298
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 33.6 bits (76), Expect = 0.061
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 43 IYFSEKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKI-DK 101
I EK+ +F+ E +I+ Y++QL L+ + Q ++E+ K
Sbjct: 22 IDILEKYIKFVKERTEIELS------YAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFIS 75
Query: 102 DDNKIFKYSKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELIFEL 160
+ N++ Y+ Q ++ I +DL + + ++ R+ Q +L
Sbjct: 76 NLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQL 134
Score = 29.0 bits (64), Expect = 1.4
Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 14/144 (9%)
Query: 69 YSEQLSKLAHREQVAIYIDLDD--EFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYI 126
+Q L Q I I L+ +F+ E +I+ Y+KQL L+ + Q
Sbjct: 7 LWDQFDNLEKHTQWGIDI-LEKYIKFVKERTEIELS------YAKQLRNLSKKYQPKKNS 59
Query: 127 DLDDVEEFNS-----DLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEH 181
++ ++ S + + ++ + + +++ D + K
Sbjct: 60 KEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHD 119
Query: 182 RLLLEQRNHPNPQELRNSQNRYPQ 205
+Q ++L +S+ R+ +
Sbjct: 120 GRKAQQHIETCWKQLESSKRRFER 143
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 31.3 bits (70), Expect = 0.31
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 5/115 (4%)
Query: 353 IFLPLLRTGFRQVTQGNI---NICLMGDPGVAKSQLL-SYIERLARRSQYTTGRGSSGVG 408
+ R ++ + + NI ++G GV K+++ + + VG
Sbjct: 30 LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 89
Query: 409 LTAAVMKDPITNEMVLEGGALVLADQ-GICCIDEFDKLPDADRTAIHEVMEQQTI 462
+ I + GGA+ +Q GI IDE DK+ + +V +
Sbjct: 90 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 144
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 30.0 bits (67), Expect = 0.78
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 371 NICLMGDPGVAKSQLLSYIERLARR 395
N L+G+PGV K+ + +E LA+R
Sbjct: 45 NPVLIGEPGVGKTAI---VEGLAQR 66
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.6 bits (65), Expect = 0.95
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 371 NICLMGDPGVAKSQLLSYIERLARRSQYTT 400
+ +G K+ L + R T+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTS 31
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.7 bits (66), Expect = 0.97
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 355 LPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVM 414
+ +++ +N+ + G+ G KS ++ + + + G V +
Sbjct: 42 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 101
Query: 415 KDPITNEMVL 424
K P +V
Sbjct: 102 KHPNIPNVVF 111
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.2 bits (64), Expect = 1.1
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 354 FLPLLRTGFRQVTQGNINICLMGDPGVAKSQLLSYI 389
L +LR + + I L+G K+ LL +
Sbjct: 2 LLSILRK-LKSAPDQEVRILLLGLDNAGKTTLLKQL 36
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL 429
+ + + G P KS LL+ + GR ++ V A +D + + ++G L
Sbjct: 2 MKVVIAGRPNAGKSSLLNAL----------AGREAAIVTDIAGTTRDVLREHIHIDGMPL 51
Query: 430 VLADQGICC 438
+ D
Sbjct: 52 HIIDTAGLR 60
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 28.8 bits (63), Expect = 1.3
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL 429
+ + ++G P V KS LL+ + + V +D I+ E+V+ G
Sbjct: 1 LRMVIVGKPNVGKSTLLNRL----------LNEDRAIVTDIPGTTRDVISEEIVIRGILF 50
Query: 430 VLAD 433
+ D
Sbjct: 51 RIVD 54
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 1.3
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 372 ICLMGDPGVAKSQLLSYIERLARRSQYTTG 401
+ L+G PGV KS L + +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAA 33
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.5 bits (62), Expect = 1.5
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMV 423
+ + L+G K+ + + +G+ + + T IT V
Sbjct: 3 MELTLVGLQYSGKTTFV---------NVIASGQFNEDMIPTVGFNMRKITKGNV 47
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 2.9
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 370 INICLMGDPGVAKSQLLSYI 389
+ I ++G G K+ +L +
Sbjct: 6 MRILILGLDGAGKTTILYRL 25
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 372
Score = 28.2 bits (62), Expect = 3.0
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 416 DPITNEMVLEGGALVLADQGIC-----CIDEFDKLPDADRTAIHEVMEQ 459
+ M+LEGG++ + +G C C+ ++ P + I E +++
Sbjct: 149 PRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKK 197
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
(SLT70), superhelical domain {Escherichia coli [TaxId:
562]}
Length = 450
Score = 28.3 bits (62), Expect = 3.1
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 18/72 (25%)
Query: 143 QNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNR 202
QM L DY PL Y+E+R + + + + N
Sbjct: 19 NRQMDVVEQMMPGL-----KDY---------PLYPYLEYRQITDDLMNQPAVTVTNFVRA 64
Query: 203 YP----QDLMRR 210
P ++
Sbjct: 65 NPTLPPARTLQS 76
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 3.3
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 3/98 (3%)
Query: 370 INICLMGDPGVAKSQLLSYIERLARRSQYTTGRGSSGVGLTAAVMKDPITNEMVLEGGAL 429
+ I + G+PGV K+ L+ I + + K + EG
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGK---RAIGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 430 VLADQGICCIDEFDKLPDADRTAIHEVMEQQTISIAKA 467
+ + + + + + +A
Sbjct: 58 IFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 27.7 bits (60), Expect = 3.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 370 INICLMGDPGVAKSQLLSYI 389
I + ++G P V KS L + I
Sbjct: 9 IKVAIVGRPNVGKSTLFNAI 28
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.3 bits (59), Expect = 3.7
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 370 INICLMGDPGVAKSQLLSYI 389
+ + ++G K+ +L
Sbjct: 3 LRLLMLGLDNAGKTTILKKF 22
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 3.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 372 ICLMGDPGVAKSQLLSYI 389
+ +G K+ LL +
Sbjct: 3 LLFLGLDNAGKTTLLHML 20
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.3 bits (59), Expect = 3.9
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 370 INICLMGDPGVAKSQLLSYI 389
+ I ++G K+ +L +
Sbjct: 1 MRILMVGLDAAGKTTILYKL 20
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
1496]}
Length = 542
Score = 28.0 bits (62), Expect = 4.1
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 16/128 (12%)
Query: 47 EKFKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKI 106
+ K +L + D+ + + + ++ D+ + EF + +
Sbjct: 204 DIVKTYLSNEYSKEIDELNTY-----IEESLNKITQNSGNDVRN--FGEFKNGESFNLYE 256
Query: 107 FKY---------SKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQMFSELI 157
+ S L A +E +Y+D+D + DL +I+ + V +
Sbjct: 257 QELVERWNLAAASDILRISALKEIGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTK 316
Query: 158 FELLPDYK 165
E + YK
Sbjct: 317 LEAIMKYK 324
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 4.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 370 INICLMGDPGVAKSQLLSYI 389
I + G KS L+ +
Sbjct: 17 IEVAFAGRSNAGKSSALNTL 36
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
{Helicobacter pylori [TaxId: 210]}
Length = 349
Score = 27.7 bits (61), Expect = 4.3
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 53 LIEFVK-IDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFK 108
I+++K + N + + Y +L + ++ F K +++ I+
Sbjct: 290 AIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTIYH 346
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.4 bits (60), Expect = 4.3
Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 10/165 (6%)
Query: 49 FKEFLIEFVKIDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDDNKIFK 108
F F+ + +I++D +K Q+ L R + + +
Sbjct: 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQF 63
Query: 109 YSKQLSKLAHREQVAIYI----------DLDDVEEFNSDLATNIQNNTRRYVQMFSELIF 158
K K A R+ + + + + +N + + + +I
Sbjct: 64 KLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQ 123
Query: 159 ELLPDYKSHDVIAKDPLDIYIEHRLLLEQRNHPNPQELRNSQNRY 203
+ + I+ LL R L Q R+
Sbjct: 124 PEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARH 168
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 27.9 bits (62), Expect = 4.4
Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 29/188 (15%)
Query: 46 SEKFKEFLIEFVK--IDKDDNKIFKYSEQLSKLAHREQVAIYIDLDDEFLIEFVKIDKDD 103
+ + +I F+ D K+ E + A I+ ++
Sbjct: 197 NNSVDDIIINFLSNYFKYDIGKLNNQKEN-NNNKMIAIGATDINTENIL-------TNKL 248
Query: 104 NKIFKY-----------SKQLSKLAHREQVAIYIDLDDVEEFNSDLATNIQNNTRRYVQM 152
+ S L ++ +Y DLD + N L +I
Sbjct: 249 KSYYYQELIQTNNLAAASDILRIAILKKYGGVYCDLDFLPGVNLSLFNDISKPNGMDSNY 308
Query: 153 FSELIFELLPDYKSHDVIAK------DPLDIYIEHRLLLEQRNHPNPQELRNSQNRYPQD 206
+ IFE + + K ++ + + I+ R+L RNH + +
Sbjct: 309 WEAAIFEAIANEKK--LMNNYPYKYMEQVPSEIKERILSFVRNHDINDLILPLGDIKISQ 366
Query: 207 LMRRFEVY 214
L
Sbjct: 367 LEILLSRL 374
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 279
Score = 27.5 bits (60), Expect = 5.1
Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 72 QLSKLAHREQVAIYIDLDD--EFLIEFVKIDKDDNKIFKYSKQLSKLAHREQVAIYIDLD 129
Q L Q + LD +F+ E ++++ Y+KQL L + D
Sbjct: 1 QFEVLERHTQWGL-DLLDRYVKFVKERTEVEQA------YAKQLRSLVKKYLPKRPAKDD 53
Query: 130 DVEEFNS-----DLATNIQNNTRRYVQMFSELIFELLPDYKSHDVIAKDPLDIYIEHRLL 184
+F+ + + + + + L + + + K ++ +
Sbjct: 54 PESKFSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRR 113
Query: 185 LEQRNHPNPQELRNSQNRYPQ 205
+Q+ ++L NS+ ++ +
Sbjct: 114 AQQQLENGFKQLENSKRKFER 134
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.5 bits (60), Expect = 5.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 362 FRQVTQGNINICLMGDPGVAKSQLLSYI 389
+Q ++ I +MG GV KS ++ I
Sbjct: 25 LKQEDVNSLTILVMGKGGVGKSSTVNSI 52
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 26.6 bits (57), Expect = 5.8
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 370 INICLMGDPGVAKSQLLS 387
I + ++G+ V KS ++
Sbjct: 3 IKMVVVGNGAVGKSSMIQ 20
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 26.3 bits (58), Expect = 5.9
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 224 TPIREVKATHIGKLVNVRGVVTRSTEVKPLMT 255
T I +++ LV++ G+ + +
Sbjct: 5 TGIDDLENKSKDSLVDIIGICKSYEDATKITV 36
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 6.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 370 INICLMGDPGVAKSQLLS 387
+ + ++GD KS L+
Sbjct: 6 LRLGVLGDARSGKSSLIH 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 7.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 370 INICLMGDPGVAKSQLLS 387
+ + + G GV KS L+
Sbjct: 3 VKLAIFGRAGVGKSALVV 20
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.5 bits (57), Expect = 7.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 369 NINICLMGDPGVAKSQLLS 387
+ +CL+GD GV KS ++
Sbjct: 4 ELKVCLLGDTGVGKSSIMW 22
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 7.9
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 369 NINICLMGDPGVAKSQLLSYI 389
+ +G K+ LL +
Sbjct: 13 TGKLVFLGLDNAGKTTLLHML 33
>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain
VI) {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 26.4 bits (57), Expect = 8.4
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 47 EKFKEFLIEFVKIDKDDNKI--FKYSEQLSKLAHREQVAIYIDLDDEFLIEFVK-IDKDD 103
E+ ++F F ++ DD ++ + L+K+ R + V +D D
Sbjct: 1 EEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT 60
Query: 104 NKIFKYSKQLSKLAHREQVAIYIDLDD 130
+ + + ++ D
Sbjct: 61 TGKLGFEEFKYLWNNIKKWQAIYKQFD 87
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 8.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 369 NINICLMGDPGVAKSQLLS 387
I ++GD V K+ LL
Sbjct: 3 TIKCVVVGDGAVGKTCLLI 21
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 26.6 bits (58), Expect = 9.1
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 418 ITNEMVLEGGALVLADQGIC-----CIDEFDKLPDADRTAIHEVMEQQT 461
++ MVLEGGA+ + G+ C+ ++ P + I + +
Sbjct: 148 VSTGMVLEGGAIDVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYL 196
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.3 bits (56), Expect = 9.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 372 ICLMGDPGVAKSQLLSYI---ERLARRSQYTT 400
I L G V KS ++ + + LAR S
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPG 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.395
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,239,462
Number of extensions: 108040
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 49
Length of query: 621
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 530
Effective length of database: 1,158,166
Effective search space: 613827980
Effective search space used: 613827980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)