Query psy11215
Match_columns 100
No_of_seqs 108 out of 131
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:03:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03359 GKAP: Guanylate-kinas 100.0 5.9E-42 1.3E-46 276.1 7.6 94 5-100 167-264 (357)
2 KOG3971|consensus 100.0 3E-29 6.5E-34 217.3 6.5 92 7-100 554-653 (758)
3 KOG3971|consensus 95.2 0.002 4.2E-08 57.6 -2.5 68 29-98 365-436 (758)
4 PF08482 HrpB_C: ATP-dependent 80.1 1.1 2.3E-05 32.6 1.5 45 52-96 62-117 (133)
5 TIGR01970 DEAH_box_HrpB ATP-de 52.3 6.6 0.00014 35.6 0.9 45 52-96 735-790 (819)
6 PF09422 WTX: WTX protein; In 50.4 6.6 0.00014 33.9 0.6 20 78-97 309-328 (471)
7 PF01857 RB_B: Retinoblastoma- 48.5 15 0.00034 26.3 2.2 44 11-54 6-50 (135)
8 PRK11664 ATP-dependent RNA hel 48.5 8.1 0.00018 34.9 0.9 45 52-96 728-783 (812)
9 PHA03418 hypothetical E4 prote 44.6 25 0.00055 27.9 3.0 33 49-93 196-228 (230)
10 PHA03419 E4 protein; Provision 40.9 32 0.0007 26.8 3.0 31 51-93 168-198 (200)
11 PF12415 rpo132: Poxvirus DNA 40.7 32 0.00069 19.6 2.2 24 32-55 8-31 (33)
12 PF08134 cIII: cIII protein fa 36.6 37 0.00081 20.4 2.2 19 10-28 24-42 (44)
13 PF12793 SgrR_N: Sugar transpo 35.4 41 0.00088 23.3 2.6 30 57-90 2-31 (115)
14 PF00102 Y_phosphatase: Protei 29.8 39 0.00084 24.0 1.8 15 79-93 50-64 (235)
15 PHA02988 hypothetical protein; 29.1 77 0.0017 23.5 3.4 34 58-93 248-281 (283)
16 cd05067 PTKc_Lck_Blk Catalytic 27.9 62 0.0014 23.1 2.6 29 59-89 230-258 (260)
17 PRK14082 hypothetical protein; 27.8 25 0.00055 22.8 0.5 11 81-91 54-64 (65)
18 PF07138 DUF1386: Protein of u 27.6 44 0.00095 27.7 1.9 35 15-49 99-143 (324)
19 cd05071 PTKc_Src Catalytic dom 25.6 87 0.0019 22.5 3.0 30 59-90 230-259 (262)
20 PF08465 Herpes_TK_C: Thymidin 25.2 41 0.00088 19.2 1.0 16 81-96 3-18 (33)
21 PF14147 Spore_YhaL: Sporulati 25.0 48 0.001 20.7 1.3 18 5-22 34-51 (52)
22 smart00256 FBOX A Receptor for 25.0 1.1E+02 0.0024 15.7 3.1 34 35-68 1-35 (41)
23 KOG0582|consensus 24.8 63 0.0014 28.4 2.5 25 59-85 267-291 (516)
24 PF04111 APG6: Autophagy prote 23.6 52 0.0011 26.4 1.7 17 39-55 167-183 (314)
25 COG4981 Enoyl reductase domain 22.6 2.1E+02 0.0046 26.1 5.3 78 11-90 382-469 (717)
26 cd05055 PTKc_PDGFR Catalytic d 22.1 73 0.0016 23.7 2.1 26 59-86 271-296 (302)
27 cd05052 PTKc_Abl Catalytic dom 21.1 90 0.0019 22.3 2.4 26 59-86 232-257 (263)
28 TIGR00444 mazG MazG family pro 20.9 2.5E+02 0.0055 22.0 5.0 76 14-90 158-246 (248)
29 cd00047 PTPc Protein tyrosine 20.7 63 0.0014 23.6 1.5 15 79-93 49-63 (231)
30 COG0649 NuoD NADH:ubiquinone o 20.6 3E+02 0.0064 23.6 5.6 36 31-70 167-202 (398)
No 1
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=100.00 E-value=5.9e-42 Score=276.13 Aligned_cols=94 Identities=30% Similarity=0.525 Sum_probs=87.7
Q ss_pred echhhHHHHHHHHHHHHHHHhccC----CCCCCCCChhhHHHHHhhhhhhhhHHHHhHHHHHHHHHHhcCcCCCCCCCCC
Q psy11215 5 IEIPEVFVKRKSWKASLRKNSFIT----PPKDTNIPEDIRDEIDCVVGQTKLLTSDKFQQMSNLIDQYENQSEQAQPRIL 80 (100)
Q Consensus 5 ~e~~~~yf~~~l~~E~~RL~~lc~----~~~~~~lpeei~g~Ir~aVGqa~LL~~~Kf~QF~gL~~~~~~~~~~~~~~~t 80 (100)
.+.++.||+++|++|++||++||. ..++++||||+.|.||+|||||||||++||+||+|||++|+++.+ .++||
T Consensus 167 ~~~dg~yF~~ll~~E~~RL~~lC~~~e~~~~~~~lpee~~~~ir~avGqa~LL~~qKf~QF~~L~~~~~~~~~--~~~~t 244 (357)
T PF03359_consen 167 CERDGHYFRKLLQSETERLEGLCAEWEKEEEENDLPEEAKGLIRSAVGQARLLMSQKFKQFEGLCQQNENPSG--EPPTT 244 (357)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCccc--CCCcc
Confidence 467788999999999999999998 666889999999999999999999999999999999999999754 55999
Q ss_pred cchhHHHHHHHHHhhhccCC
Q psy11215 81 ENDLDSFWDMIYIQLYTTNS 100 (100)
Q Consensus 81 ~~DL~GFWDmv~lqVedv~s 100 (100)
++||+||||||+|||+||++
T Consensus 245 ~~DL~GFWDmv~lqVedv~~ 264 (357)
T PF03359_consen 245 CQDLAGFWDMVYLQVEDVDK 264 (357)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999974
No 2
>KOG3971|consensus
Probab=99.95 E-value=3e-29 Score=217.33 Aligned_cols=92 Identities=23% Similarity=0.404 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHHHHHhccC----CCCC----CCCChhhHHHHHhhhhhhhhHHHHhHHHHHHHHHHhcCcCCCCCCC
Q psy11215 7 IPEVFVKRKSWKASLRKNSFIT----PPKD----TNIPEDIRDEIDCVVGQTKLLTSDKFQQMSNLIDQYENQSEQAQPR 78 (100)
Q Consensus 7 ~~~~yf~~~l~~E~~RL~~lc~----~~~~----~~lpeei~g~Ir~aVGqa~LL~~~Kf~QF~gL~~~~~~~~~~~~~~ 78 (100)
.++.||++++.+|+.||++||. ..++ +++|||++|.||+|||+|||||+|||+||++||++|+++ ++.|+
T Consensus 554 rdG~~flKll~~e~srLe~~~~qae~e~e~~~~~~~lsEd~lg~lrSAvgsarLLvsqK~~qF~~Lc~~Nlnp--t~~~r 631 (758)
T KOG3971|consen 554 RDGNWFLKLLAAEQSRLEGWCPQAETEAEEAGPQNDLSEDVLGKLRSAVGSARLLVSQKFQQFPELCEENLNP--TDLPR 631 (758)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhhhHHhcCCCCCccHHHHHHHHhccCchhhHHHHHhhhHHHHHHhccCC--ccCCC
Confidence 3455999999999999999998 3333 499999999999999999999999999999999999996 57789
Q ss_pred CCcchhHHHHHHHHHhhhccCC
Q psy11215 79 ILENDLDSFWDMIYIQLYTTNS 100 (100)
Q Consensus 79 ~t~~DL~GFWDmv~lqVedv~s 100 (100)
+|.+||+||||||+++||||.+
T Consensus 632 ~T~qdlagfwdml~lsiEdv~~ 653 (758)
T KOG3971|consen 632 PTLQDLAGFWDLLQLSVEDISM 653 (758)
T ss_pred CchhhhhhhHHHHHHHhhhhhh
Confidence 9999999999999999999863
No 3
>KOG3971|consensus
Probab=95.24 E-value=0.002 Score=57.61 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCCCCCChhhHHHHHhhhhhhhhHHHHhHHHHHHHHH---HhcCcCCCCCCCCCcchhHH-HHHHHHHhhhcc
Q psy11215 29 PPKDTNIPEDIRDEIDCVVGQTKLLTSDKFQQMSNLID---QYENQSEQAQPRILENDLDS-FWDMIYIQLYTT 98 (100)
Q Consensus 29 ~~~~~~lpeei~g~Ir~aVGqa~LL~~~Kf~QF~gL~~---~~~~~~~~~~~~~t~~DL~G-FWDmv~lqVedv 98 (100)
-.....+|++.+..||+++++++.+++..+.+|++.++ +++...|.. .+|+.|.++ +|+|..+|+++|
T Consensus 365 ~~~s~~~Pa~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gi~--~~t~~~~d~~~e~~~~~q~~sv 436 (758)
T KOG3971|consen 365 TKLSIDAPADAKDPIRTAVNQTRSSMKERSSSSRGKVNGRCNRLYSIGIQ--ETTCTDPDKEGEDMSRFQIESV 436 (758)
T ss_pred ccccccCCCcccCCCCccccccccccccccccccccccccccccccCCcc--ccccccccccccccchhhhhhh
Confidence 34556899999999999999999999999999999999 888888877 899999999 999999999886
No 4
>PF08482 HrpB_C: ATP-dependent helicase C-terminal; InterPro: IPR013689 This domain is found near the C terminus of bacterial ATP-dependent helicases such as HrpB.
Probab=80.07 E-value=1.1 Score=32.62 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=31.9
Q ss_pred hHHHHhHHHHHHHHHHhcCc-----------CCCCCCCCCcchhHHHHHHHHHhhh
Q psy11215 52 LLTSDKFQQMSNLIDQYENQ-----------SEQAQPRILENDLDSFWDMIYIQLY 96 (100)
Q Consensus 52 LL~~~Kf~QF~gL~~~~~~~-----------~~~~~~~~t~~DL~GFWDmv~lqVe 96 (100)
-.++-|++.|.|+.+.-.-. +|...|.-+.+||+|||.--|-+|.
T Consensus 62 P~lsvrlQE~FG~~~tP~i~~Grvpl~l~LLSPa~RPiqvT~DL~~FW~~sY~~Vr 117 (133)
T PF08482_consen 62 PVLSVRLQELFGLTETPRIAGGRVPLTLELLSPAGRPIQVTQDLASFWQGSYPEVR 117 (133)
T ss_pred cEEEEeHHHHhCCCCCCeecCCCceeEEEEeCCCCCceeeeCCHHHHhcccHHHHH
Confidence 55688999999987542221 2334556678999999998887774
No 5
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=52.34 E-value=6.6 Score=35.61 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=31.8
Q ss_pred hHHHHhHHHHHHHHHHhcCc-----------CCCCCCCCCcchhHHHHHHHHHhhh
Q psy11215 52 LLTSDKFQQMSNLIDQYENQ-----------SEQAQPRILENDLDSFWDMIYIQLY 96 (100)
Q Consensus 52 LL~~~Kf~QF~gL~~~~~~~-----------~~~~~~~~t~~DL~GFWDmv~lqVe 96 (100)
=.++-|++.+.|+.+.-.-- +|...|.-..+||+|||.--|-+|.
T Consensus 735 p~l~vklQe~fG~~~~P~i~~g~~~~~~~LLsPa~rp~qvT~DL~~FW~~~Y~~vr 790 (819)
T TIGR01970 735 PLLAVRLQELFGLAESPRVAQGRVPLTLELLSPAQRPLQVTRDLASFWAGAYREVK 790 (819)
T ss_pred cEEEEEHHhhcCCCCCCeecCCCceEEEEEeCCCCChhhhhCcHHhHhCccHHHHH
Confidence 55678899999876543221 2334556678999999999888774
No 6
>PF09422 WTX: WTX protein; InterPro: IPR019003 This entry contains proteins that have no known function. The entry includes the WTX protein, which is an X chromosome gene; Wilms' tumor gene on the X chromosome (WTX) []. WTX protein is a protein encoded by a gene mutated in Wilms tumors and it forms a complex with beta-catenin, AXIN1 and beta-TrCP2 (beta-transducin repeat-containing protein 2) []. The WTX protein is found to be inactivated in one third of Wilms' tumours [].
Probab=50.40 E-value=6.6 Score=33.94 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.1
Q ss_pred CCCcchhHHHHHHHHHhhhc
Q psy11215 78 RILENDLDSFWDMIYIQLYT 97 (100)
Q Consensus 78 ~~t~~DL~GFWDmv~lqVed 97 (100)
.+-..||++||||+.-.++.
T Consensus 309 ~~d~~~~q~~wd~~~~~~~~ 328 (471)
T PF09422_consen 309 QVDDTYLQEFWDMLNQTEEQ 328 (471)
T ss_pred ccchhHHHHHHhhccccccc
Confidence 45567999999998765543
No 7
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=48.48 E-value=15 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhccC-CCCCCCCChhhHHHHHhhhhhhhhHH
Q psy11215 11 FVKRKSWKASLRKNSFIT-PPKDTNIPEDIRDEIDCVVGQTKLLT 54 (100)
Q Consensus 11 yf~~~l~~E~~RL~~lc~-~~~~~~lpeei~g~Ir~aVGqa~LL~ 54 (100)
||+|....-..||..+|. .....++++.|+-.+.-++-+..-||
T Consensus 6 FfrKvy~la~~Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t~L~ 50 (135)
T PF01857_consen 6 FFRKVYKLAAVRLQDLCERLDLSSDLREKIWTCFEHSLTHHTELM 50 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhHHHH
Confidence 666666678999999998 44455677888777777765444444
No 8
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=48.46 E-value=8.1 Score=34.92 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.4
Q ss_pred hHHHHhHHHHHHHHHHhcCc-----------CCCCCCCCCcchhHHHHHHHHHhhh
Q psy11215 52 LLTSDKFQQMSNLIDQYENQ-----------SEQAQPRILENDLDSFWDMIYIQLY 96 (100)
Q Consensus 52 LL~~~Kf~QF~gL~~~~~~~-----------~~~~~~~~t~~DL~GFWDmv~lqVe 96 (100)
=.++-|++.+.|+.+.---- +|...|.-..+||+|||.--|-+|.
T Consensus 728 p~l~vklQe~fG~~~~P~i~~g~~p~~~~LLsPa~Rp~qvT~DL~~FW~~~Y~~vr 783 (812)
T PRK11664 728 PALAVRMQEMFGEAQSPTIAQGRVPLVLELLSPAQRPLQITRDLAAFWQGAYREVQ 783 (812)
T ss_pred cEEEEEHHhhcCCCCCCeeCCCCceEEEEEeCCCCChhhhhCcHHhHhCccHHHHH
Confidence 45678899998876543221 2334555678999999998888774
No 9
>PHA03418 hypothetical E4 protein; Provisional
Probab=44.61 E-value=25 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=23.8
Q ss_pred hhhhHHHHhHHHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHH
Q psy11215 49 QTKLLTSDKFQQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYI 93 (100)
Q Consensus 49 qa~LL~~~Kf~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~l 93 (100)
..-.++.+==.||..||++- ..||.|||-.+.+
T Consensus 196 ~VA~lL~kWE~~f~qLV~~I------------~~DL~dYW~kL~t 228 (230)
T PHA03418 196 TVACLLGTWEESFRQLVEDI------------QEDLDDYWRKLGI 228 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhcC
Confidence 33445555568999999864 4689999987653
No 10
>PHA03419 E4 protein; Provisional
Probab=40.94 E-value=32 Score=26.76 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=22.5
Q ss_pred hhHHHHhHHHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHH
Q psy11215 51 KLLTSDKFQQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYI 93 (100)
Q Consensus 51 ~LL~~~Kf~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~l 93 (100)
-+++.+==.||..||++- +.||.|||-.+.+
T Consensus 168 A~~L~kWE~~f~qLV~~I------------~~DL~~YW~kL~t 198 (200)
T PHA03419 168 ALRLQKWEQQFDQLVDNI------------VVDLRDYWQRLRT 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhcC
Confidence 344455558999999864 4699999987653
No 11
>PF12415 rpo132: Poxvirus DNA dependent RNA polymerase; InterPro: IPR024390 All three classes of poxvirus genes - early, intermediate and late - are transcribed by the viral RNA polymerase compex []. This complex is composed of nine distinct subunits which total more than 500kDa in mass. The two largest subunits (147 and 136kDa) are homologous to the largest subunits of eukaryotic and prokaryotic RNA polymerases and, like them, are thought to form a claw-shaped structure whose cleft is the site of template interaction and phosphodiester bond formation. While the smaller subunits of poxvirus RNA polymerase show much less similarity, if any, to the smaller subunits of the eukaryotic and prokaryotic enzymes, it is thought that they may play a similar role in interacting with transcription factors. The 132kDa subunit is the second largest subunit of the poxvirus DNA dependent RNA polymerase and shows structural similarity to the second-largest RNA polymerase subunits of eubacteria, archaebacteria, and eukaryotes.
Probab=40.70 E-value=32 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.6
Q ss_pred CCCCChhhHHHHHhhhhhhhhHHH
Q psy11215 32 DTNIPEDIRDEIDCVVGQTKLLTS 55 (100)
Q Consensus 32 ~~~lpeei~g~Ir~aVGqa~LL~~ 55 (100)
.-+.|.|+..+|.+-|-.|+.+++
T Consensus 8 sydmp~ei~ylvnalIestk~i~~ 31 (33)
T PF12415_consen 8 SYDMPPEIIYLVNALIESTKRILA 31 (33)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999987764
No 12
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=36.62 E-value=37 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhccC
Q psy11215 10 VFVKRKSWKASLRKNSFIT 28 (100)
Q Consensus 10 ~yf~~~l~~E~~RL~~lc~ 28 (100)
|-+++++.+-..+|+++|.
T Consensus 24 kr~rrLIRaa~k~lealc~ 42 (44)
T PF08134_consen 24 KRIRRLIRAARKQLEALCQ 42 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3678888888999999985
No 13
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=35.38 E-value=41 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCcCCCCCCCCCcchhHHHHHH
Q psy11215 57 KFQQMSNLIDQYENQSEQAQPRILENDLDSFWDM 90 (100)
Q Consensus 57 Kf~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDm 90 (100)
++.||..|...... .+.++|.+||+..|.-
T Consensus 2 l~~~y~~L~~~~~~----~~~~vtl~elA~~l~c 31 (115)
T PF12793_consen 2 LLEQYQRLWQHYGG----QPVEVTLDELAELLFC 31 (115)
T ss_pred HHHHHHHHHHHcCC----CCcceeHHHHHHHhCC
Confidence 57899999998883 3348999999999853
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=29.78 E-value=39 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.862 Sum_probs=11.6
Q ss_pred CCcchhHHHHHHHHH
Q psy11215 79 ILENDLDSFWDMIYI 93 (100)
Q Consensus 79 ~t~~DL~GFWDmv~l 93 (100)
|+.+..+.||.||.=
T Consensus 50 P~~~t~~~FW~mv~~ 64 (235)
T PF00102_consen 50 PMPDTIEDFWQMVWE 64 (235)
T ss_dssp -SGGGHHHHHHHHHH
T ss_pred cccccccceehheee
Confidence 456889999999864
No 15
>PHA02988 hypothetical protein; Provisional
Probab=29.05 E-value=77 Score=23.50 Aligned_cols=34 Identities=3% Similarity=0.002 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHH
Q psy11215 58 FQQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYI 93 (100)
Q Consensus 58 f~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~l 93 (100)
-..+..|+.+|....|+. |||.+++-....+.+.
T Consensus 248 ~~~l~~li~~cl~~dp~~--Rps~~ell~~l~~~~~ 281 (283)
T PHA02988 248 PLEIKCIVEACTSHDSIK--RPNIKEILYNLSLYKF 281 (283)
T ss_pred cHHHHHHHHHHhcCCccc--CcCHHHHHHHHHHHHh
Confidence 356889999999998888 9999999888887764
No 16
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=27.90 E-value=62 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHHHHH
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDSFWD 89 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWD 89 (100)
..+..++.+|.++.|+. +||.+++..+..
T Consensus 230 ~~~~~li~~~l~~~p~~--Rp~~~~l~~~l~ 258 (260)
T cd05067 230 EELYELMRLCWKEKPEE--RPTFEYLRSVLE 258 (260)
T ss_pred HHHHHHHHHHccCChhh--CCCHHHHHHHhh
Confidence 47899999999998888 999999988763
No 17
>PRK14082 hypothetical protein; Provisional
Probab=27.77 E-value=25 Score=22.85 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=7.4
Q ss_pred cchhHHHHHHH
Q psy11215 81 ENDLDSFWDMI 91 (100)
Q Consensus 81 ~~DL~GFWDmv 91 (100)
+++--||||++
T Consensus 54 ~~e~PGF~efi 64 (65)
T PRK14082 54 CQEVPGFWEFI 64 (65)
T ss_pred cccCCcHHHhh
Confidence 34445899986
No 18
>PF07138 DUF1386: Protein of unknown function (DUF1386); InterPro: IPR009815 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf11; it is a family of uncharacterised viral proteins.
Probab=27.63 E-value=44 Score=27.74 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHHHHH---HHhccC-------CCCCCCCChhhHHHHHhhhhh
Q psy11215 15 KSWKASLR---KNSFIT-------PPKDTNIPEDIRDEIDCVVGQ 49 (100)
Q Consensus 15 ~l~~E~~R---L~~lc~-------~~~~~~lpeei~g~Ir~aVGq 49 (100)
.+.+++++ +...++ .....+||+++.+.+.+.+|+
T Consensus 99 ~vL~~Id~~~pl~~R~~~g~~i~~ld~~~~i~~~~~~~Lq~~i~~ 143 (324)
T PF07138_consen 99 EVLAEIDAHVPLEKRVQRGGQIFALDNFLEIHENVTDLLQTIIGR 143 (324)
T ss_pred HHHHHHhccCCHHHHhccccccccchhhhhhhHhHHHHHHHHHHH
Confidence 34466666 655555 222368999999999999987
No 19
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=25.64 E-value=87 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHHHHHH
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDSFWDM 90 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDm 90 (100)
..+..++.+|..+.++. +++...+..|++-
T Consensus 230 ~~l~~li~~~l~~~p~~--Rp~~~~~~~~l~~ 259 (262)
T cd05071 230 ESLHDLMCQCWRKEPEE--RPTFEYLQAFLED 259 (262)
T ss_pred HHHHHHHHHHccCCccc--CCCHHHHHHHHHH
Confidence 66889999999988777 8999999998863
No 20
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=25.24 E-value=41 Score=19.19 Aligned_cols=16 Identities=31% Similarity=0.854 Sum_probs=14.1
Q ss_pred cchhHHHHHHHHHhhh
Q psy11215 81 ENDLDSFWDMIYIQLY 96 (100)
Q Consensus 81 ~~DL~GFWDmv~lqVe 96 (100)
.+|+-|-|.-||.||-
T Consensus 3 ~dDvpGlW~~IY~qi~ 18 (33)
T PF08465_consen 3 QDDVPGLWTEIYTQIL 18 (33)
T ss_pred CCccccHHHHHHHHHH
Confidence 4799999999999985
No 21
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=25.03 E-value=48 Score=20.71 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=14.3
Q ss_pred echhhHHHHHHHHHHHHH
Q psy11215 5 IEIPEVFVKRKSWKASLR 22 (100)
Q Consensus 5 ~e~~~~yf~~~l~~E~~R 22 (100)
||+++.-|++.+..|.+|
T Consensus 34 IEkEGevymeR~e~erer 51 (52)
T PF14147_consen 34 IEKEGEVYMERMEEERER 51 (52)
T ss_pred HHHhHHHHHHHHHHHhcc
Confidence 788898888888877654
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=25.00 E-value=1.1e+02 Score=15.71 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=20.1
Q ss_pred CChhhHHHHHhhhhhhhhHHHHhH-HHHHHHHHHh
Q psy11215 35 IPEDIRDEIDCVVGQTKLLTSDKF-QQMSNLIDQY 68 (100)
Q Consensus 35 lpeei~g~Ir~aVGqa~LL~~~Kf-~QF~gL~~~~ 68 (100)
+|+|+...|-+-+.-..++--... ++|+.++...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh
Confidence 588888888776655444332222 5666666443
No 23
>KOG0582|consensus
Probab=24.78 E-value=63 Score=28.41 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhH
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLD 85 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~ 85 (100)
+-|+.++..|+...|.+ +||+++|-
T Consensus 267 ksf~e~i~~CL~kDP~k--RptAskLl 291 (516)
T KOG0582|consen 267 KSFREMIALCLVKDPSK--RPTASKLL 291 (516)
T ss_pred HHHHHHHHHHhhcCccc--CCCHHHHh
Confidence 58999999999998888 99998873
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.64 E-value=52 Score=26.45 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=14.8
Q ss_pred hHHHHHhhhhhhhhHHH
Q psy11215 39 IRDEIDCVVGQTKLLTS 55 (100)
Q Consensus 39 i~g~Ir~aVGqa~LL~~ 55 (100)
-+.+|.+|.||+-||+.
T Consensus 167 ~W~EINAA~Gq~~LLL~ 183 (314)
T PF04111_consen 167 EWNEINAAWGQTALLLQ 183 (314)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 48999999999999984
No 25
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=22.61 E-value=2.1e+02 Score=26.05 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhccC--------CCCCCCCChhhHHHHHhhhhh--hhhHHHHhHHHHHHHHHHhcCcCCCCCCCCC
Q psy11215 11 FVKRKSWKASLRKNSFIT--------PPKDTNIPEDIRDEIDCVVGQ--TKLLTSDKFQQMSNLIDQYENQSEQAQPRIL 80 (100)
Q Consensus 11 yf~~~l~~E~~RL~~lc~--------~~~~~~lpeei~g~Ir~aVGq--a~LL~~~Kf~QF~gL~~~~~~~~~~~~~~~t 80 (100)
+|.++++.--+||..--. .....+=|+++..++.+|-=+ ++.|-.+-..-|-+||.+-.-|- ..-|+-
T Consensus 382 rf~~ml~R~EaRl~~~~~g~~~tl~~~~~~ldkp~~aia~ll~aYP~A~t~~L~~~Da~~F~~LC~~p~KPV--pfVPvI 459 (717)
T COG4981 382 RFGDMLRRAEARLTEQDHGPITTLFTDYSLLDKPDEAIAKLLAAYPDARTQQLNPADAAFFLSLCRNPGKPV--PFVPVI 459 (717)
T ss_pred HHHHHHHHHHHhccccccCceeeeecChhhccChHHHHHHHHHhCcchhhhcCChhhhHHHHHHhcCCCCCC--Cccccc
Confidence 788888766677765432 344457899999999999544 56788889999999999888553 233666
Q ss_pred cchhHHHHHH
Q psy11215 81 ENDLDSFWDM 90 (100)
Q Consensus 81 ~~DL~GFWDm 90 (100)
-.|++-||..
T Consensus 460 D~d~~rwwr~ 469 (717)
T COG4981 460 DKDVRRWWRS 469 (717)
T ss_pred hhHHHHHhcc
Confidence 7899999965
No 26
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=22.08 E-value=73 Score=23.74 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHH
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDS 86 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~G 86 (100)
..|..++.+|.++.|++ +||.+++-.
T Consensus 271 ~~~~~li~~cl~~~p~~--Rpt~~ell~ 296 (302)
T cd05055 271 AEIYDIMKTCWDADPLK--RPTFKQIVQ 296 (302)
T ss_pred HHHHHHHHHHcCCCchh--CcCHHHHHH
Confidence 57889999999998888 899888753
No 27
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=21.13 E-value=90 Score=22.34 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHH
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDS 86 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~G 86 (100)
..+..|+.+|..+.|++ +||.+|+.-
T Consensus 232 ~~~~~li~~cl~~~p~~--Rp~~~~l~~ 257 (263)
T cd05052 232 PKVYELMRACWQWNPSD--RPSFAEIHQ 257 (263)
T ss_pred HHHHHHHHHHccCCccc--CCCHHHHHH
Confidence 57888999999988777 999988853
No 28
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=20.89 E-value=2.5e+02 Score=22.05 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhccCCC--CCCCCChhhHHHHHhhhhhhhhHH----------HHhHH-HHHHHHHHhcCcCCCCCCCCC
Q psy11215 14 RKSWKASLRKNSFITPP--KDTNIPEDIRDEIDCVVGQTKLLT----------SDKFQ-QMSNLIDQYENQSEQAQPRIL 80 (100)
Q Consensus 14 ~~l~~E~~RL~~lc~~~--~~~~lpeei~g~Ir~aVGqa~LL~----------~~Kf~-QF~gL~~~~~~~~~~~~~~~t 80 (100)
..+..|...|..-+... ....+.+++-+.+-+.|.=||.+= +.||. +|+..=..... .|......+
T Consensus 158 ~k~~EE~~El~~a~~~~~~~~~~ieeElGDlLFalvnlAr~~giDpE~ALr~a~~KF~~Rf~~~E~~~~~-~g~~~~~~s 236 (248)
T TIGR00444 158 DKVYEELDEVMYEARQAVVEQNKLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRFREVERIVAA-RGLELTGVD 236 (248)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhCC
Confidence 34556777776655422 334677788888888888777652 67773 35544333222 233344778
Q ss_pred cchhHHHHHH
Q psy11215 81 ENDLDSFWDM 90 (100)
Q Consensus 81 ~~DL~GFWDm 90 (100)
.+.|+.+|+-
T Consensus 237 lee~~~lW~~ 246 (248)
T TIGR00444 237 LEEMEELWQQ 246 (248)
T ss_pred HHHHHHHHHH
Confidence 8999999974
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=20.66 E-value=63 Score=23.60 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=11.6
Q ss_pred CCcchhHHHHHHHHH
Q psy11215 79 ILENDLDSFWDMIYI 93 (100)
Q Consensus 79 ~t~~DL~GFWDmv~l 93 (100)
|+.+...-||.||.=
T Consensus 49 P~~~t~~~FW~mv~~ 63 (231)
T cd00047 49 PLPNTVEDFWRMVWE 63 (231)
T ss_pred CChhhHHHHHHHHHh
Confidence 445688999999863
No 30
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=20.63 E-value=3e+02 Score=23.62 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCCCChhhHHHHHhhhhhhhhHHHHhHHHHHHHHHHhcC
Q psy11215 31 KDTNIPEDIRDEIDCVVGQTKLLTSDKFQQMSNLIDQYEN 70 (100)
Q Consensus 31 ~~~~lpeei~g~Ir~aVGqa~LL~~~Kf~QF~gL~~~~~~ 70 (100)
-..|||+...+.|+..+.. +-+|++-|+.|..+|--
T Consensus 167 V~~DlP~~~~e~i~~f~d~----~~~~l~eye~l~~~N~I 202 (398)
T COG0649 167 VRRDLPEGWLELIREFLDY----FPKRLDEYEKLLTKNRI 202 (398)
T ss_pred ccccCCHHHHHHHHHHHHH----HHHhHHHHHHHHhcChH
Confidence 3469999999999998875 67889999999887743
Done!