Query psy11215
Match_columns 100
No_of_seqs 108 out of 131
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:04:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3brb_A Proto-oncogene tyrosine 34.1 34 0.0012 24.0 3.2 38 59-98 276-313 (313)
2 1wmi_B RELB, hypothetical prot 33.7 66 0.0023 20.0 4.1 30 15-44 15-45 (67)
3 4ddp_A Beclin-1; ECD, autophag 31.3 20 0.0007 26.7 1.7 16 39-54 59-74 (210)
4 1loi_A Cyclic 3',5'-AMP specif 30.3 22 0.00075 18.3 1.2 7 84-90 16-22 (26)
5 3vp7_A Vacuolar protein sortin 27.6 26 0.00088 26.3 1.7 15 40-54 34-48 (220)
6 4ay9_X Follicle-stimulating ho 20.9 29 0.00099 25.4 0.8 11 78-88 337-347 (350)
7 3s95_A LIMK-1, LIM domain kina 18.9 86 0.0029 21.9 3.0 35 59-95 250-284 (310)
8 2w1i_A JAK2; chromosomal rearr 18.7 1.2E+02 0.004 21.5 3.7 34 59-94 290-323 (326)
9 2vx3_A Dual specificity tyrosi 18.7 76 0.0026 23.3 2.7 25 58-84 346-370 (382)
10 1wlx_A Alpha-actinin 4; three- 18.1 78 0.0027 21.7 2.5 21 75-95 94-114 (129)
No 1
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=34.13 E-value=34 Score=24.02 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHHhhhcc
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYIQLYTT 98 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~lqVedv 98 (100)
..+..|+..|....|.. |||..++.....-+.-++.||
T Consensus 276 ~~l~~li~~~l~~dp~~--Rps~~~l~~~L~~l~~~lp~v 313 (313)
T 3brb_A 276 DELYEIMYSCWRTDPLD--RPTFSVLRLQLEKLLESLPDV 313 (313)
T ss_dssp HHHHHHHHHTTCSSGGG--SCCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCChhh--CcCHHHHHHHHHHHHHhcCCC
Confidence 56889999999998877 899999988877776665554
No 2
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=33.71 E-value=66 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhccC-CCCCCCCChhhHHHHH
Q psy11215 15 KSWKASLRKNSFIT-PPKDTNIPEDIRDEID 44 (100)
Q Consensus 15 ~l~~E~~RL~~lc~-~~~~~~lpeei~g~Ir 44 (100)
.+.-|+.||+++-- ...+.++|++-+..|.
T Consensus 15 RlkveiQRLE~ml~p~~~~e~v~eeEl~ei~ 45 (67)
T 1wmi_B 15 RLKVEIQRLEAMLMPEERDEDITEEEIAELL 45 (67)
T ss_dssp HHHHHHHHHHHHTSCBCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 45567888888776 5566679998877664
No 3
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=31.29 E-value=20 Score=26.69 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=14.6
Q ss_pred hHHHHHhhhhhhhhHH
Q psy11215 39 IRDEIDCVVGQTKLLT 54 (100)
Q Consensus 39 i~g~Ir~aVGqa~LL~ 54 (100)
-+.+|.+|.||+-||+
T Consensus 59 ~W~EINAAwGq~~LLL 74 (210)
T 4ddp_A 59 EWNEINAAWGQTVLLL 74 (210)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3889999999999997
No 4
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=30.27 E-value=22 Score=18.26 Aligned_cols=7 Identities=43% Similarity=1.094 Sum_probs=5.9
Q ss_pred hHHHHHH
Q psy11215 84 LDSFWDM 90 (100)
Q Consensus 84 L~GFWDm 90 (100)
|-|+||-
T Consensus 16 lvgwwdq 22 (26)
T 1loi_A 16 LVGWWDQ 22 (26)
T ss_dssp GGGGHHH
T ss_pred hhhhHHH
Confidence 7899985
No 5
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=27.59 E-value=26 Score=26.34 Aligned_cols=15 Identities=40% Similarity=0.528 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhhhHH
Q psy11215 40 RDEIDCVVGQTKLLT 54 (100)
Q Consensus 40 ~g~Ir~aVGqa~LL~ 54 (100)
+.+|.+|-||+-||+
T Consensus 34 W~EINAAwGq~~LLL 48 (220)
T 3vp7_A 34 WKEINAALGQLILLL 48 (220)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999997
No 6
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=20.90 E-value=29 Score=25.41 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=5.3
Q ss_pred CCCcchhHHHH
Q psy11215 78 RILENDLDSFW 88 (100)
Q Consensus 78 ~~t~~DL~GFW 88 (100)
.--|+||-|||
T Consensus 337 fnPCedl~g~~ 347 (350)
T 4ay9_X 337 FNPCEDIMGYN 347 (350)
T ss_dssp SCCCCCC----
T ss_pred CCChhhhccCh
Confidence 44599999999
No 7
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=18.92 E-value=86 Score=21.92 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHHhh
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYIQL 95 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~lqV 95 (100)
..+..|+..|....|+. +||..++.-+..-+.-.+
T Consensus 250 ~~l~~li~~~l~~dP~~--Rps~~~l~~~L~~l~~~~ 284 (310)
T 3s95_A 250 PSFFPITVRCCDLDPEK--RPSFVKLEHWLETLRMHL 284 (310)
T ss_dssp TTHHHHHHHHTCSSGGG--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChhh--CcCHHHHHHHHHHHHHhc
Confidence 35788999999988877 899999988777665443
No 8
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=18.69 E-value=1.2e+02 Score=21.50 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCcchhHHHHHHHHHh
Q psy11215 59 QQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYIQ 94 (100)
Q Consensus 59 ~QF~gL~~~~~~~~~~~~~~~t~~DL~GFWDmv~lq 94 (100)
..+..|+..|....|+. |||..++.-.-+-+.-+
T Consensus 290 ~~l~~li~~cl~~dP~~--Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 290 DEIYMIMTECWNNNVNQ--RPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHHHHHHHSCSSGGG--SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhh--CcCHHHHHHHHHHHHHH
Confidence 56888999999998877 88999987766555443
No 9
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=18.69 E-value=76 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCCcchh
Q psy11215 58 FQQMSNLIDQYENQSEQAQPRILENDL 84 (100)
Q Consensus 58 f~QF~gL~~~~~~~~~~~~~~~t~~DL 84 (100)
...|..|+.+|+...|.. |+|++++
T Consensus 346 ~~~~~dli~~mL~~dP~~--Rpta~e~ 370 (382)
T 2vx3_A 346 YLKFKDLILRMLDYDPKT--RIQPYYA 370 (382)
T ss_dssp HHHHHHHHHHHTCSCTTT--SCCHHHH
T ss_pred hHHHHHHHHHhcCCChhh--CCCHHHH
Confidence 468999999999998888 9998876
No 10
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=18.12 E-value=78 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=16.6
Q ss_pred CCCCCCcchhHHHHHHHHHhh
Q psy11215 75 AQPRILENDLDSFWDMIYIQL 95 (100)
Q Consensus 75 ~~~~~t~~DL~GFWDmv~lqV 95 (100)
..-.+|++||...|++|+=-|
T Consensus 94 pYT~it~~~l~~~W~~l~~li 114 (129)
T 1wlx_A 94 PYTTVTPQIINSKWEKVQQLV 114 (129)
T ss_dssp SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHH
Confidence 345778999999999987544
Done!