RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11215
(100 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.002
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 19/91 (20%)
Query: 1 MNISIEIPEVFVKRKSW-KASLRKNSFIT--PPKDTNIPEDIRDEIDCVVGQTKLLTSDK 57
+ + +P S+ AS + F P D DE +L+ K
Sbjct: 16 LEHVLLVPT-----ASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPA---ELVG--K 63
Query: 58 FQQMSNLIDQYENQSEQAQ-PRILENDLDSF 87
F + S+ Q ++L L F
Sbjct: 64 FLGY---VSSLVEPSKVGQFDQVLNLCLTEF 91
Score = 30.8 bits (69), Expect = 0.060
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 21 LRKN----SFITPPKDTNIPEDIRDEIDCVVGQTKLLTSDKFQQMSNLIDQYENQSEQAQ 76
+R+N F T E I EI+ + TS F+ L+ + Q
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEIN------EHSTSYTFRSEKGLLSATQF----TQ 1733
Query: 77 PRIL 80
P +
Sbjct: 1734 PALT 1737
>1ied_A HCMV protease, capsid protein P40: assemblin protease; coat
protein, hydrolase, serine protease, catalytic triad;
2.00A {Human herpesvirus 5} SCOP: b.57.1.1 PDB: 1id4_A
1njt_A* 1nju_A* 1nkm_A* 1ief_A 1ieg_A 1iec_A* 2wpo_A*
1nkk_A* 1jq7_A* 1lay_A 1wpo_A 1cmv_A 1jq6_A
Length = 256
Score = 30.0 bits (67), Expect = 0.094
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 8 PEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRDEIDCVVGQTKLLTSDK 57
E+ + R + L P +P +I + VVG + S +
Sbjct: 30 AELLLPRDVVEHWLHAQGQGQPSLSVALPLNINHDDTAVVGHVAAMQSVR 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.17
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 33/92 (35%)
Query: 30 PKDTNIP-------------EDIRDEID------CVVGQTKLLTS-------DKFQQMSN 63
P +IP D+ ++ V Q K T + ++ N
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 64 -------LIDQYENQSEQAQPRILENDLDSFW 88
++D Y ++ LD ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 27.5 bits (60), Expect = 0.82
Identities = 11/94 (11%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 4 SIEIPEVFVKRKSWKASLRKNSFI-TPPKDTNIPEDIRDEIDCVVGQTKLLTSDKFQQMS 62
+ K+ L K ++ P+D +P ++ + + ++ +
Sbjct: 291 LDHHSMTLTPDEV-KSLLLK--YLDCRPQD--LPREVLTTNPRRLS----IIAESIRDGL 341
Query: 63 NLIDQYENQSEQAQPRILENDLDSFWDMIYIQLY 96
D +++ + I+E+ L+ Y +++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 0.37
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 36 PEDIR----------DEIDCVVGQTKLLTSDKFQQMSNLIDQYENQSEQAQPRILEN 82
PE IR E+D + +K ++ +L + + QSEQ + + N
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKK--DLEEWNQRQSEQVEKNKINN 138
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP;
1.59A {Homo sapiens} SCOP: c.55.3.5
Length = 204
Score = 26.3 bits (58), Expect = 1.8
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 5 IEIPEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRD 41
IE P V + + + ++ P +T + +
Sbjct: 34 IEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCIS 70
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif,
glycoside H family 66, hydrolase; 1.60A {Streptococcus
mutans} PDB: 3vmo_A* 3vmp_A*
Length = 643
Score = 26.4 bits (57), Expect = 1.8
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 15 KSWKASLRKNSFITPPKDTNIPEDIR------DEIDCVVGQTKLLTSDKFQQMSNLIDQY 68
WK + TP + TN+ E D + Q L + D + Q S +
Sbjct: 549 SDWKNEDGYENNKTPDEQTNLLVTYPLTGVSMAEADRIAKQVYLTSPDDWLQSSMISLAT 608
Query: 69 ENQSEQAQPRILENDLDS--FWDMIYI 93
+ ++ + +L + WDMIYI
Sbjct: 609 QVKTNENGDPVLYIQVPRLTLWDMIYI 635
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 26.0 bits (57), Expect = 2.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 53 LTSDKFQQMSNLIDQYENQSEQAQPRILENDLDSFWDMIYIQL 95
S+ + +L+ Y+ Q E+ R+ + L ++ D Y +L
Sbjct: 228 SGSEDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDNDYAKL 270
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous
motif, winged-helix, biosynthetic protein; 2.10A {Homo
sapiens} SCOP: a.4.5.53 a.118.1.18
Length = 226
Score = 25.8 bits (56), Expect = 2.5
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 9 EVFVKRKSWKASLRKNSFITPPKDTNIPEDIRDEID 44
+V++ + W A FI +++ P++I ++ID
Sbjct: 171 KVWMSKYGWSADESGQIFICSQEESIKPKNIVEKID 206
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase,
F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces
cerevisiae}
Length = 471
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 52 LLTSDKFQQMSNLIDQYENQSEQAQPRILENDLDSFWD 89
LLT+ + + ++ Q ++ +I+ ND + W+
Sbjct: 199 LLTNATLEDIKSI--QGAKARAASESKIVVNDTEKAWE 234
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 25.4 bits (56), Expect = 3.4
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 39 IRDEIDCVVGQTKLLTSDKFQQM 61
+ E+ V+ + ++ + M
Sbjct: 320 LLQEVQSVLPDNQTPRAEDLRNM 342
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 25.2 bits (56), Expect = 5.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 30 PKDTNIPEDIRDEIDCVV 47
P D+ P D+R+ I +V
Sbjct: 314 PADSKQPYDVREVIARLV 331
>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC,
GST fold, metal transport; 1.60A {Caenorhabditis
elegans}
Length = 291
Score = 24.9 bits (53), Expect = 5.1
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 6 EIPEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRDEI 43
+I + ++ + + R+ + +P K IPE + +I
Sbjct: 243 DIIHHYKEQMNLFTNQRE-TLQSPTKTHTIPEKVLSDI 279
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 24.8 bits (55), Expect = 5.9
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 30 PKDTNIPEDIRDEIDCVV 47
P N P D+ I+ V+
Sbjct: 289 PDSANQPYDMHSVIEHVL 306
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 24.7 bits (54), Expect = 6.4
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 30 PKDTNIPEDIRDEIDCVV 47
P + P DI + I +
Sbjct: 317 PMNQKRPYDIYEVIARLF 334
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition,
structures of 3'- exonuclease and ITS RNA complex,
hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Length = 299
Score = 24.5 bits (53), Expect = 7.3
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 5 IEIPEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRD 41
IE P V + + + ++ P +T + +
Sbjct: 102 IEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCIS 138
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 24.7 bits (54), Expect = 7.6
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 30 PKDTNIPEDIRDEIDCVV 47
P + DI + I +
Sbjct: 314 PLNDKRAYDIYNVIARLF 331
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 24.5 bits (53), Expect = 7.7
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 19 ASLRKNSFIT--PPKDTNIPEDIRDEIDCVVGQTK 51
+ R F+ I ++R++I+ V + +
Sbjct: 147 INSRTQGFLALFSGDTGEIKSEVREQINAKVAEWR 181
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 24.6 bits (53), Expect = 8.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 30 PKDTNIPEDIRDEIDCVVGQTK 51
PK T I + +R EI+ VV +
Sbjct: 266 PKKTEITDKLRGEINKVVNKYI 287
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo
sapiens}
Length = 224
Score = 24.0 bits (52), Expect = 9.1
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 5 IEIPEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRD 41
IE P + + ++ + + ++ P + +
Sbjct: 53 IEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTE 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,473,656
Number of extensions: 71399
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 35
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)