RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11215
         (100 letters)



>d1iega_ b.57.1.1 (A:) Human cytomegalovirus protease {Human
          cytomegalovirus [TaxId: 10359]}
          Length = 248

 Score = 29.8 bits (67), Expect = 0.033
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 8  PEVFVKRKSWKASLRKNSFITPPKDTNIPEDIRDEIDCVVGQTKLLTSD 56
           E+ + R   +  L       P     +P +I  +   VVG    + S 
Sbjct: 22 AELLLPRDVVEHWLHAQGQGQPSLSVALPLNINHDDTAVVGHVAAMQSV 70


>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
          factor 3 subunit 12, eIF3k, C-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 24.3 bits (53), Expect = 1.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 9  EVFVKRKSWKASLRKNSFITPPKDTNIPEDIRDEID 44
          +V++ +  W A      FI   +++  P++I ++ID
Sbjct: 40 KVWMSKYGWSADESGQIFICSQEESIKPKNIVEKID 75


>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 225

 Score = 24.7 bits (53), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 59  QQMSNLIDQY-ENQSEQAQPRILENDLDS------FWDMIYIQ 94
           ++  N  D+  EN +E+ + ++ EN + S      FW M Y +
Sbjct: 172 EEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRK 214


>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
          {Nostoc sp. pcc 7120 [TaxId: 103690]}
          Length = 210

 Score = 23.7 bits (51), Expect = 5.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 48 GQTKLLTSDKFQQMSNLIDQYENQSEQA 75
          G+  LLTS   +    L  Q+  Q  QA
Sbjct: 13 GEKLLLTSRSREDFFPLSMQFVTQVNQA 40


>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 206

 Score = 23.6 bits (50), Expect = 5.0
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 59  QQMSNLIDQY-ENQSEQAQPRILENDLDS------FWDMIY 92
           +++  +++   E   E  + R  E   +       FWD+ Y
Sbjct: 166 KRIEKILNSLAEKHGEFEKERAREVFKEVSKFELIFWDIAY 206


>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
          elegans) [TaxId: 6239]}
          Length = 97

 Score = 23.3 bits (49), Expect = 5.7
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 23 KNSFITPPKDTNIPEDIRDEIDCVV 47
          +  FI  P  T + E       C V
Sbjct: 1  QPRFIVKPYGTEVGEGQSANFYCRV 25


>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
          subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
          Length = 263

 Score = 23.6 bits (50), Expect = 6.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 30 PKDTNIPEDIRDEIDCVV 47
          P   N P D+   I+ V+
Sbjct: 22 PDSANQPYDMHSVIEHVL 39


>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
          subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 264

 Score = 23.2 bits (49), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 30 PKDTNIPEDIRDEIDCVV 47
          P + N   D+RD I  VV
Sbjct: 24 PDNPNKGYDVRDVIKRVV 41


>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
          modules [TaxId: 9606]}
          Length = 98

 Score = 22.5 bits (47), Expect = 9.0
 Identities = 2/28 (7%), Positives = 6/28 (21%)

Query: 20 SLRKNSFITPPKDTNIPEDIRDEIDCVV 47
          S+         +   + +         V
Sbjct: 1  SMEAPKIFERIQSQTVGQGSDAHFRVRV 28


>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A
          subunit {Acidaminococcus fermentans [TaxId: 905]}
          Length = 299

 Score = 22.8 bits (48), Expect = 9.7
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 30 PKDTNIPEDIRDEIDCVV 47
          P +     DI + I  + 
Sbjct: 26 PLNDKRAYDIYNVIARLF 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 373,830
Number of extensions: 14833
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 17
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)