BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1122
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 5 CVGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGR 64
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 134
Query: 65 VLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQ 124
+ + G +FGEI +L +RTA VR+ Y+ L+SLS ++ +++YP + +
Sbjct: 135 EM-KLSDGSYFGEISLLT---RGRRTASVRADTYSRLYSLSVDNFNEVLEEYPMMRRAFE 190
Query: 125 NLGRKRL 131
+ RL
Sbjct: 191 TVAIDRL 197
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K++ +F PGD I R+G + ++M+ I G++ V+++ G
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNK 129
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
T + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 130 ETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 186
Query: 126 LGRKRL 131
+ RL
Sbjct: 187 VALDRL 192
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K++ +F PGD I R+G + ++M+ I G++ V+++ G
Sbjct: 77 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNK 135
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
T + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 136 ETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 192
Query: 126 LGRKRL 131
+ RL
Sbjct: 193 VALDRL 198
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K++ +F PGD I R+G + ++M+ I G++ V+++ G
Sbjct: 71 VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNK 129
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
T + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 130 ETKLADGSYFGEICLLT---RGRRTARVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 186
Query: 126 LGRKRL 131
+ RL
Sbjct: 187 VALDRL 192
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K++ +F PGD I R+G V ++M+ I G+ VI++S +
Sbjct: 77 VATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKE 136
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 137 M-KLTDGSYFGEICLLT---KGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 192
Query: 126 LGRKRL 131
+ RL
Sbjct: 193 VAIDRL 198
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 134 M-KLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 126 LGRKRL 131
+ RL
Sbjct: 190 VAIDRL 195
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 134 M-KLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 126 LGRKRL 131
+ RL
Sbjct: 190 VAIDRL 195
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 72 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 131
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 132 M-KLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 187
Query: 126 LGRKRL 131
+ RL
Sbjct: 188 VAIDRL 193
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 133
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 134 M-KLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 126 LGRKRL 131
+ RL
Sbjct: 190 VAIDRL 195
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V + +F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ +
Sbjct: 77 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 136
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ + G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 137 M-KLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 192
Query: 126 LGRKRL 131
+ RL
Sbjct: 193 VAIDRL 198
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V +F P F+ + K+K +F PGD I R+G + ++ + I G++ V+++ G
Sbjct: 74 VASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTK-GNK 132
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G +FGEI +L +RTA VR+ Y L+SLS ++ +++YP + +
Sbjct: 133 EXKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPXXRRAFET 189
Query: 126 LGRKRL 131
+ RL
Sbjct: 190 VAIDRL 195
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V F F+ +V ++ +F P D + ++G MF I GI+++I G +
Sbjct: 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVI 132
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
T++ G +FGEI +L + +R A V+ Y LFSLS + + ++P ++ ++
Sbjct: 133 ATSLSDGSYFGEICLLTRE---RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEE 189
Query: 126 LGRKRL 131
+ +RL
Sbjct: 190 IAVRRL 195
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 70
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + R+A V + L SL D PE EI
Sbjct: 71 -VELGPGAFFGEMALISGE---PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF-- 124
Query: 126 LGRKRLMEAKN 136
RK +EA+
Sbjct: 125 --RKTALEARG 133
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 70
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + R+A V + L SL D PE EI +
Sbjct: 71 -VELGPGAFFGEMALISGE---PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 126
Query: 126 LGRKR 130
+R
Sbjct: 127 TALER 131
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 72
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + R+A V + L SL D PE EI +
Sbjct: 73 -VELGPGAFFGEMALISGE---PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 128
Query: 126 LGRKR 130
+R
Sbjct: 129 TALER 133
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 17 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 74
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + R+A V + L SL D PE EI +
Sbjct: 75 -VELGPGAFFGEMALISGE---PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 130
Query: 126 LGRKR 130
+R
Sbjct: 131 TALER 135
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 230 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 287
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + R+A V + L SL D PE EI +
Sbjct: 288 -VELGPGAFFGEMALISGE---PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 343
Query: 126 LGRKR 130
+R
Sbjct: 344 TALER 348
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 72
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + +A V + L SL D PE EI +
Sbjct: 73 -VELGPGAFFGEMALISGE---PESATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 128
Query: 126 LGRKR 130
+R
Sbjct: 129 TALER 133
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 6 VGVVTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRV 65
V V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + +
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP-- 72
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQN 125
+ G FFGE+ +++ + +A V + L SL D PE EI +
Sbjct: 73 -VELGPGAFFGEMALISGE---PWSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 128
Query: 126 LGRKR 130
+R
Sbjct: 129 TALER 133
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESGR--VL 66
IFQ +P + L +++ F G + +GE ++II G +++ + GR +L
Sbjct: 13 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 72
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T M D FGE+ I + RT+ ++ S+ R+ + S + D PE E
Sbjct: 73 TIMGPSDMFGELSIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 124
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESGR--VL 66
IFQ +P + L +++ F G + +GE ++II G +++ + GR +L
Sbjct: 11 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 70
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T M D FGE+ I + RT+ ++ S+ R+ + S + D PE E
Sbjct: 71 TIMGPSDMFGELSIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 122
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESGR--VL 66
IFQ +P + L +++ F G + +GE ++II G +++ + GR +L
Sbjct: 10 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 69
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T M D FGE+ I + RT+ ++ S+ R+ + S + D PE E
Sbjct: 70 TIMGPSDMFGELSIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 121
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESGR--VL 66
IFQ +P + L +++ F G + +GE ++II G +++ + GR +L
Sbjct: 35 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 94
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T M D FGE+ I + RT+ ++ S+ R+ + S + D PE E
Sbjct: 95 TIMGPSDMFGELSIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 146
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTT 68
+ +F+ L L L +K PG+ + R+G+ + ++ + G +EV+ ++ VL
Sbjct: 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNT-VLAI 138
Query: 69 MKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE 118
+ GD G L + + K A+V+++ Y +L +S + + ++ YPE
Sbjct: 139 LGKGDLIGSDS-LTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPE 187
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 11 IFQECQPEF-------LHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESG 63
+F+E P F L L ++ + PGDLI GE + + G LEVI +
Sbjct: 28 VFKE-HPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD- 85
Query: 64 RVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEIL 123
V+ + GD FG++ L + A+VR++ Y +L + R+ A++ E
Sbjct: 86 EVVAILGKGDVFGDV-FWKEATLAQSCANVRALTYCDLHVIKRD----ALQKVLEFYTAF 140
Query: 124 QNLGRKRLMEAKNLNKK 140
+ + L+ NL K+
Sbjct: 141 SHSFSRNLILTYNLRKR 157
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESGR--VL 66
IFQ +P + L +++ F G + +GE ++II G +++ + GR +L
Sbjct: 35 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 94
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T D FGE+ I + RT+ ++ S+ R+ + S + D PE E
Sbjct: 95 TIXGPSDMFGELSIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 146
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 31 IFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILN 82
I+ PG+ I R+G+ ++I G ++V + V+ +K D+FGE+ +LN
Sbjct: 152 IYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLN 203
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISES--GR--VL 66
IFQ P +++L+ M+ F G I +GE ++II G +++ + GR +L
Sbjct: 33 IFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLL 92
Query: 67 TTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQE 121
T M D FGE+ I + RT+ V +++ + + + + D+P E
Sbjct: 93 TIMGPSDMFGELSIFD---PGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAE 144
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 11 IFQECQPEFLHDLVLK-MKAYIFTPGDLICRKGEVAREMFIIADGILEV----ISESGRV 65
+F PE + DL L + ++ G I +G++ + ++++A G + + + R
Sbjct: 6 LFHGLAPEEV-DLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT 64
Query: 66 LTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYP 117
L + G+ FGE+ +L+ +G +R+A +V EL +L RED L+ ++ P
Sbjct: 65 LALLGPGELFGEMSLLD-EG--ERSASAVAVEDTELLALFREDYLALIRRLP 113
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 38 ICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVG 97
I ++G+V ++++ DG +EV E G L TM G FGE+ IL RTA V+++
Sbjct: 57 IIKEGDVGSLVYVMEDGKVEVTKE-GVKLCTMGPGKVFGELAILY---NCTRTATVKTLV 112
Query: 98 YAELFSLSRE 107
+L+++ R+
Sbjct: 113 NVKLWAIDRQ 122
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDGLN-KRTADVRSV 96
I ++G+V ++++ DG +EV E G L TM G FGE+ IL N RTA V+++
Sbjct: 73 IIKEGDVGSLVYVMEDGKVEVTKE-GVKLCTMGPGKVFGELAIL----YNCTRTATVKTL 127
Query: 97 GYAELFSLSRE 107
+L+++ R+
Sbjct: 128 VNVKLWAIDRQ 138
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGR---- 64
V FQ E L L ++ + G+ I R+G FII+ G + V E
Sbjct: 162 VPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP 221
Query: 65 -VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
L T+ GD+FGE L G + RTA+V
Sbjct: 222 VFLRTLGKGDWFGEKA---LQGEDVRTANV 248
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 32 FTPGDLICRKGEVAREMFIIADGILEVISES--GR--VLTTMKAGDFFGEIGILNLDGLN 87
+T I G+ +F I G + ++ E GR ++ + +GDFFGE+G+ +G
Sbjct: 18 YTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSE 77
Query: 88 K-RTADVRS--------VGYAELFSLSREDVLSAMKDYPEAQEILQNLG 127
+ R+A VR+ + YA+ LS++D EIL LG
Sbjct: 78 QERSAWVRAKVECEVAEISYAKFRELSQQD-----------SEILYTLG 115
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILE-VISESGRV-- 65
V +F+ L + ++K +FT + R+G+ EM I G LE V ++ GR
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 66 --LTTMKAGDFFG-EIGILNLD-----GLNKRTADVRSVGYAELFSL 104
+ +K GDF G E+ LD L T V+++ E F+L
Sbjct: 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFAL 117
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESG-RVLT 67
+FQ C E L L ++ G ++ R+GE A +I+ G EV + + G ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 68 TMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQNLG 127
G GEI +L + R+A V ++ ++ R + M P E L
Sbjct: 80 RALPGMIVGEIALLR---DSPRSATVTTIEPLTGWTGGR-GAFATMVHIPGVGERLLRTA 135
Query: 128 RKRL 131
R+RL
Sbjct: 136 RQRL 139
>pdb|1TW9|A Chain A, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|B Chain B, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|C Chain C, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|D Chain D, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|E Chain E, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|F Chain F, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|G Chain G, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
pdb|1TW9|H Chain H, Glutathione Transferase-2, Apo Form, From The Nematode
Heligmosomoides Polygyrus
Length = 206
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 42 GEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDG 85
GE AR++F +AD E + + +KA FG++ +L +DG
Sbjct: 15 GECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDG 58
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 86
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 87 RAKTACEVAEIS 98
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 87
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 88 RAKTACEVAEIS 99
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 87
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 88 RAKTACEVAEIS 99
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 86
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 87 RAKTACEVAEIS 98
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 87
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 88 RAKTACEVAEIS 99
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 22 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 79
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 80 RAKTACEVAEIS 91
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 32 FTPGDLICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLN 87
+ + +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-Q 73
Query: 88 KRTADVRSVGYAELFSLS 105
+R+A VR+ E+ +S
Sbjct: 74 ERSAWVRAKTACEVAEIS 91
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 86
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 87 RAKTACEVAEIS 98
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 86
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 87 RAKTACEVAEIS 98
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEV--ISESG-RVLT 67
+FQ C E L L ++ G ++ R+GE A +I+ G EV + + G ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 68 TMKAGDFFGEIGILNLDGLNKRTADVRSV 96
G GEI +L + R+A V ++
Sbjct: 80 RALPGXIVGEIALLR---DSPRSATVTTI 105
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L+ + GDF GE+G+ +G +R+A V
Sbjct: 80 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG-QERSAWV 137
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 138 RAKTACEVAEIS 149
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 35 GDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILN 82
G ++ +GE +II G + V+ V+ T+ GD FG++ ++N
Sbjct: 64 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVN 111
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 35 GDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILN 82
G ++ +GE +II G + V+ V+ T+ GD FG++ ++N
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVN 416
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 35 GDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILN 82
G ++ +GE +II G + V+ V+ T+ GD FG++ ++N
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVN 416
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 35 GDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILN 82
G ++ +GE +II G + V+ V+ T+ GD FG++ ++N
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVN 416
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 38 ICRKGEVAREMFIIADGILEVI--SESGR--VLTTMKAGDFFGEIGILNLDGLNKRTADV 93
+ +GE A ++ I G + V+ E G+ +L + GDF GE+G+ +G +R+A V
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFE-EG-QERSAWV 87
Query: 94 RSVGYAELFSLS 105
R+ E+ +S
Sbjct: 88 RAKTACEVAEIS 99
>pdb|1Y9L|A Chain A, The X-Ray Structure Of An Secretion System Protein
pdb|1Y9T|A Chain A, Crystal Structure Of A Type Iii Secretion System Protein
Complexed With The Lipid,
1-Monohexanoyl-2-Hydroxy-Sn-Glycero-3-Phosphate
pdb|2JW1|A Chain A, Structural Characterization Of The Type Iii Pilotin-
Secretin Interaction In Shigella Flexneri By Nmr
Spectroscopy
Length = 115
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 28 KAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDGLN 87
K Y P DL+ + + + + I SG+ + + AG F G + +DG
Sbjct: 16 KDYFSIPNDLLWSFNTTNKSINVYSKCI------SGKAVYSFNAGKFMGNFNVKEVDGC- 68
Query: 88 KRTADVRSVGYAELFSLSREDVL 110
D + + +LFS+ ++ V+
Sbjct: 69 --FMDAQKIAIDKLFSMLKDGVV 89
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 32 FTPGDLICRKGEVAREMFIIADG---ILEVISESGRVLTTMKAG--DFFGEIGIL 81
F G I +GE E FII +G +L+ SE+ + + G D+FGEI +L
Sbjct: 185 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALL 239
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 65 VLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMK 114
V T+K GD G + L+LD N DV Y + SL + LS +K
Sbjct: 62 VKVTLKTGDALGGLDKLSLDNQNGNVPDVMMAPYDRVGSLGSDGQLSEVK 111
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 32 FTPGDLICRKGEVAREMFIIADG---ILEVISESGRVLTTMKAG--DFFGEIGIL 81
F G I +GE E FII +G +L+ SE+ + + G D+FGEI +L
Sbjct: 183 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALL 237
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 32 FTPGDLICRKGEVAREMFIIADG---ILEVISESGRVLTTMKAG--DFFGEIGIL 81
F G I +GE E FII +G +L+ SE+ + + G D+FGEI +L
Sbjct: 181 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALL 235
>pdb|2ON7|A Chain A, Structure Of Nagst-1
pdb|2ON7|B Chain B, Structure Of Nagst-1
pdb|2ON7|C Chain C, Structure Of Nagst-1
pdb|2ON7|D Chain D, Structure Of Nagst-1
Length = 206
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 42 GEVAREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDG 85
GE AR++F +AD E + +K FG++ +L +DG
Sbjct: 15 GECARQIFALADQEFEDVRLDKEQFAKVKPDLPFGQVPVLEVDG 58
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 32 FTPGDLICRKGEVAREMFIIADGILEVISESGRVLTTMKAG-----DFFGEIGILNLDGL 86
F G+ I +GE + +II +G V+ ++ G D+FGEI +L L
Sbjct: 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALL----L 331
Query: 87 NK-RTADVRSVGYAELFSLSR 106
N+ R A V + G + L R
Sbjct: 332 NRPRAATVVARGPLKCVKLDR 352
>pdb|1XR5|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase 3d
From Human Rhinovirus Serotype 14
Length = 466
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 68 TMKAGDFFGEIGILNLDGLNKRTADVRSVG-YAELFSLSREDVLSAMKDYPEAQEILQNL 126
T AG + +GI D LNK T D + Y + + + +++ +KD + + ++ L
Sbjct: 113 TTSAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLP-LVTYIKDELRSVDKVR-L 170
Query: 127 GRKRLMEAKNLN 138
G+ RL+EA +LN
Sbjct: 171 GKSRLIEASSLN 182
>pdb|3PR3|A Chain A, Crystal Structure Of Plasmodium Falciparum
Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
With Fructose-6-Phosphate
pdb|3PR3|B Chain B, Crystal Structure Of Plasmodium Falciparum
Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
With Fructose-6-Phosphate
pdb|3QKI|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
pdb|3QKI|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
pdb|3QKI|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase
(Pf14_0341) From Plasmodium Falciparum 3d7
Length = 597
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 81 LNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDY-----------PEAQEILQNLGRK 129
L G+N +++S Y EL +LS E+ +KDY + + +L R+
Sbjct: 14 LYFQGMNMEITNLKS--YKELVTLSAEEKTKDLKDYLNDKNRSESLIKKFKNFYMDLSRQ 71
Query: 130 RLMEAKNLNK 139
R E K LNK
Sbjct: 72 RYSE-KTLNK 80
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 40 RKGEVAR--EMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVG 97
RK E A+ + FI G + E V+T + G +G+LN+DG
Sbjct: 102 RKAEXAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 161
Query: 98 YAELF--SLSREDVLSAMKDYPEAQEILQNL 126
E F +RE ++SA P A+E+++ L
Sbjct: 162 VEEGFISPTAREIIVSA----PTAKELVKKL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,050,860
Number of Sequences: 62578
Number of extensions: 151269
Number of successful extensions: 471
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 64
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)