RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1122
(150 letters)
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 61.9 bits (149), Expect = 9e-14
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESG----- 63
V +F+ L + ++K +FT + R+G+ EM I G LE ++ G
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 64 RVLTTMKAGDFFGEIGILN------LDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYP 117
+ +K GDF G+ + L T V+++ E F+L +++ +
Sbjct: 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130
Query: 118 E 118
Sbjct: 131 R 131
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 61.3 bits (148), Expect = 2e-13
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTT 68
+F D+ M F G+ + ++G+ ++I G + + T+
Sbjct: 25 NVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGE-MDVYVNNEWATS 83
Query: 69 MKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEIL 123
+ G FGE+ ++ R A V++ +L+ + R+ + + +
Sbjct: 84 VGEGGSFGELALI---YGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 135
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 61.4 bits (148), Expect = 2e-13
Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 15/142 (10%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESG----- 63
+ + + +V + ++ G+ I +G+ A FI+ G + + +
Sbjct: 7 LPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDI 66
Query: 64 -----RVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE 118
+ G +FGE+ L R A ++G + ++ + + E
Sbjct: 67 EENGAVEIARCLRGQYFGELA---LVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCME 123
Query: 119 -AQEILQNLGRKRL-MEAKNLN 138
+ + + + + N++
Sbjct: 124 IMKRNIATYEEQLVALFGTNMD 145
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 60.2 bits (145), Expect = 4e-13
Identities = 19/110 (17%), Positives = 40/110 (36%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTT 68
+ +F+ PE + ++ M + G+ + +G+ ++I G ++ + V
Sbjct: 21 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 80
Query: 69 MKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE 118
+ D G G L L R A + + L+ L R +
Sbjct: 81 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNA 130
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 58.2 bits (140), Expect = 2e-12
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTT 68
V +FQ+ P L ++V ++A G +ICR GE MF + +G + V + + L
Sbjct: 16 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 75
Query: 69 MKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQNLGR 128
L R+A V + L SL D PE EI +
Sbjct: 76 GAFFGEM------ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 129
Query: 129 KR 130
+R
Sbjct: 130 ER 131
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 54.4 bits (130), Expect = 6e-11
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESG----- 63
V+I + + ++ F G I +GE E FII +G V+
Sbjct: 7 VSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEF 66
Query: 64 RVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE-AQEI 122
+ + D+FGEI +L R A V + G + L R + + +
Sbjct: 67 VEVGRLGPSDYFGEIALLMNR---PRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRN 123
Query: 123 LQNL 126
+Q
Sbjct: 124 IQQY 127
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 53.2 bits (127), Expect = 1e-10
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 9 VTIFQECQPEFLHDLVLKMK-AYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLT 67
+ +L + G ++ +GE +II G + V+ V+
Sbjct: 15 IKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVC 74
Query: 68 TMKAGDFFGEIGILNLDGLNKRTADVRSVG-YAELFSLSREDVLSAMKDYPE 118
T+ GD FG++ ++N R A + + +ED ++D
Sbjct: 75 TLHEGDDFGKLALVNDA---PRAASIVLREDNCHFLRVDKEDFNRILRDVEA 123
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 53.7 bits (128), Expect = 2e-10
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 9 VTIFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVI------SES 62
V F++ P L + L G + R+G++ + + G L+V +
Sbjct: 29 VKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 88
Query: 63 GRVLTTMKAGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE 118
+ T+ G FGE + N R A + + +EL + +ED + + Y +
Sbjct: 89 AVTICTLGIGTAFGESILDN----TPRHATIVTRESSELLRIEQEDFKALWEKYRQ 140
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 53.3 bits (127), Expect = 2e-10
Identities = 14/135 (10%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTTMK 70
++ E L +++ + + +G++ +F + +G ++++ E +
Sbjct: 8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67
Query: 71 AGDF-FGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE-AQEILQNLGR 128
G+ ++ +V +++ ++ E + + +K + L+ L +
Sbjct: 68 RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127
Query: 129 K-RLMEAKNLNKKFK 142
+ E + + K
Sbjct: 128 ELGYAERRTVTLTQK 142
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 52.5 bits (125), Expect = 3e-10
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 16 QPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISE----SGRVLTTMKA 71
+ + L L+ +T I G+ +F I G + ++ E ++ + +
Sbjct: 1 KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 60
Query: 72 GDFFGEIGIL-NLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE-AQEILQNLGRK 129
GDFFGE+G+ +R+A VR+ E+ +S + E + + +
Sbjct: 61 GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR 120
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 51.8 bits (123), Expect = 6e-10
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 32 FTPGDLICRKGEVAREMFIIADGILEVISESGRV----LTTMKAGDFFGEIGILNLDGLN 87
+ + +GE A ++ I G + V+ + L+ + GDF GE+G+ +
Sbjct: 18 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL--FEEGQ 75
Query: 88 KRTADVRSVGYAELFSLSREDVLSAMKDYPE-AQEILQNLGRK 129
+R+A VR+ E+ +S + ++ P+ + + R+
Sbjct: 76 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 118
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 52.0 bits (123), Expect = 2e-09
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 11 IFQECQPEFLHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVISESGRVLTTMK 70
+F P F+ ++ K+K +F PGD I R+G + ++M+ I G++ V+++ G +
Sbjct: 75 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNKEMKLS 133
Query: 71 AGDFFGEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQNLGRKR 130
G +FGEI + +RTA VR+ Y L+SLS ++ +++YP + + + R
Sbjct: 134 DGSYFGEICL---LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDR 190
Query: 131 L 131
L
Sbjct: 191 L 191
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 42.6 bits (99), Expect = 1e-06
Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 8/129 (6%)
Query: 20 LHDLVLKMKAYIFTPGDLICRKGEVAREMFIIADGILEVI----SESGRVLTTMKAGDFF 75
L L+ K +F G+++ + + ++ I+ +G L+ + + +K
Sbjct: 3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62
Query: 76 GEIGILNLDGLNKRTADVRSVGYAELFSLSREDVLSAMKDYPE-AQEILQNLGRK-RLME 133
I + + + +V + +++ S+ +E L + E L+++ R++
Sbjct: 63 ASGFIFSSE--PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVS 120
Query: 134 AKNLNKKFK 142
K K
Sbjct: 121 EKLFFLTTK 129
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 32.6 bits (73), Expect = 0.006
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 32 FTPGDLICRKGEV--AREMFIIADGILEVISESGRVLTTMKAGDFFGEIGILNLDGLNKR 89
F GD+I G + + +G++ + + G +R
Sbjct: 5 FKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQER 64
Query: 90 TADVRSVGYAELFSLSREDVLSAMKDYPEAQEILQNLGRKRLMEA 134
+ L L + +++ Q+L + L EA
Sbjct: 65 IYFAEAATDVRLEPLPENPDPELL------KDLAQHLSQ-GLAEA 102
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.8 bits (49), Expect = 4.2
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 22 DLVLKMKAYIFTPGDLICRKGEVAR 46
LK K + F + C K R
Sbjct: 6 GTNLKQKGHFFVEDQIYCEKHARER 30
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 31
Score = 22.9 bits (49), Expect = 4.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 22 DLVLKMKAYIFTPGDLICRKGEVAR 46
+L LK K Y F G+L C AR
Sbjct: 6 NLNLKQKGYFFVEGELYCETHARAR 30
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 24.6 bits (53), Expect = 5.5
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 102 FSLSREDVLSAMKDYPEAQE 121
++ R ++ Y A+E
Sbjct: 161 INVLRASAQELVQSYQVAEE 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.391
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,871
Number of extensions: 24719
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 21
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)