Query psy11220
Match_columns 127
No_of_seqs 107 out of 669
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 21:14:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 1.4E-41 3E-46 308.5 7.8 107 1-110 305-411 (1017)
2 COG0567 SucA 2-oxoglutarate de 100.0 3.9E-41 8.4E-46 309.6 7.8 101 1-103 231-331 (906)
3 PRK12270 kgd alpha-ketoglutara 100.0 2.1E-37 4.6E-42 288.1 7.8 108 1-111 549-658 (1228)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5.1E-34 1.1E-38 264.1 7.7 99 1-101 245-347 (929)
5 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.9E-33 4.2E-38 230.5 8.5 100 1-101 42-144 (265)
6 KOG0451|consensus 100.0 2.8E-31 6E-36 238.4 4.4 105 1-110 213-329 (913)
7 PRK09404 sucA 2-oxoglutarate d 100.0 2.6E-29 5.7E-34 232.8 8.5 100 1-102 245-347 (924)
8 PF00676 E1_dh: Dehydrogenase 97.2 9E-05 1.9E-09 61.3 0.7 73 3-90 49-121 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 95.8 0.024 5.2E-07 46.4 5.9 71 6-90 54-124 (293)
10 PLN02374 pyruvate dehydrogenas 94.5 0.072 1.6E-06 46.9 5.3 73 2-90 141-214 (433)
11 PF03109 ABC1: ABC1 family; I 57.2 6.8 0.00015 28.2 1.5 29 18-48 3-31 (119)
12 PF08667 BetR: BetR domain; I 47.8 26 0.00057 27.1 3.5 49 4-52 18-67 (147)
13 PF15230 SRRM_C: Serine/argini 43.3 8.3 0.00018 26.5 0.1 9 67-75 43-51 (66)
14 PF15380 DUF4607: Domain of un 39.1 12 0.00027 31.5 0.6 59 66-124 85-153 (265)
15 PLN02269 Pyruvate dehydrogenas 36.0 93 0.002 26.9 5.4 70 5-90 87-158 (362)
16 COG0769 MurE UDP-N-acetylmuram 30.4 80 0.0017 28.2 4.2 53 16-80 302-354 (475)
17 cd08584 PI-PLCc_GDPD_SF_unchar 21.2 49 0.0011 26.6 1.1 9 5-15 2-10 (192)
18 PF12844 HTH_19: Helix-turn-he 20.1 59 0.0013 20.0 1.1 25 5-29 38-62 (64)
No 1
>KOG0450|consensus
Probab=100.00 E-value=1.4e-41 Score=308.51 Aligned_cols=107 Identities=71% Similarity=0.996 Sum_probs=99.8
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceee
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQ 80 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~ 80 (127)
||||||||||||||+||++||+++||+||++..+..++|||||||||++.++.++.+||.|+|+|++|||||||+||||+
T Consensus 305 iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~ 384 (1017)
T KOG0450|consen 305 IVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVM 384 (1017)
T ss_pred eEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceee
Confidence 69999999999999999999999999999997777779999999999999999877999999999999999999999999
Q ss_pred hhhhhhHhhcCCCCCCeeEEeeceeeechh
Q psy11220 81 GKTRAEQFYRGDNEGKKLEYSVNIKIKSMA 110 (127)
Q Consensus 81 GkaRAkQd~~~d~~~~kvl~~~~~~~~~~~ 110 (127)
|||||+|.+.+|.+++|+|. |+||.-|
T Consensus 385 GKtrA~q~y~~D~~~~k~m~---ILiHGDa 411 (1017)
T KOG0450|consen 385 GKTRAEQFYTGDEEGKKVMG---ILIHGDA 411 (1017)
T ss_pred chHHHHHHhccccccceeEE---EEEecch
Confidence 99999999999999999987 4576543
No 2
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.9e-41 Score=309.59 Aligned_cols=101 Identities=45% Similarity=0.591 Sum_probs=92.6
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceee
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQ 80 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~ 80 (127)
||||||||||||||+||||||++.||+||++.......+||||||||+++++.+ .++.|+|+|++||||||+|||||+
T Consensus 231 vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~--~~~~v~l~La~NPSHLE~v~PVV~ 308 (906)
T COG0567 231 VVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQT--DGGKVHLSLAFNPSHLEIVNPVVE 308 (906)
T ss_pred EEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCccccccccccccccccc--CCCeeEEEecCCcchhhhhchhhh
Confidence 699999999999999999999999999999987766669999999999998765 455899999999999999999999
Q ss_pred hhhhhhHhhcCCCCCCeeEEeec
Q psy11220 81 GKTRAEQFYRGDNEGKKLEYSVN 103 (127)
Q Consensus 81 GkaRAkQd~~~d~~~~kvl~~~~ 103 (127)
|++||+|+.+.|.+.+++|++++
T Consensus 309 G~vRa~Qd~~~d~~~~k~lpili 331 (906)
T COG0567 309 GSVRAKQDRLGDTERDKVLPILI 331 (906)
T ss_pred cchHhhhhhhccCccceeEEEEE
Confidence 99999999999988888888653
No 3
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.1e-37 Score=288.13 Aligned_cols=108 Identities=42% Similarity=0.533 Sum_probs=91.9
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCC--CCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCce
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEA--ADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPV 78 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~--~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPV 78 (127)
+|||||||||||||+||.||||.+||+||+|.-. ...+|||||||||+..+... ..|++|.++|++|||||||||||
T Consensus 549 vvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~-~~g~~~~v~laaNPSHLEavdpV 627 (1228)
T PRK12270 549 VVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQ-MFGDEIKVSLAANPSHLEAVDPV 627 (1228)
T ss_pred EEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeec-cCCCeeEEEEecCchhhhhcchH
Confidence 5899999999999999999999999999998643 34689999999999887554 57888999999999999999999
Q ss_pred eehhhhhhHhhcCCCCCCeeEEeeceeeechhh
Q psy11220 79 VQGKTRAEQFYRGDNEGKKLEYSVNIKIKSMAR 111 (127)
Q Consensus 79 v~GkaRAkQd~~~d~~~~kvl~~~~~~~~~~~~ 111 (127)
+.|.+|||||.++.+. +-..++=|.||.-|.
T Consensus 628 leGivRakQd~l~~g~--~~~~vlpi~~hGdaa 658 (1228)
T PRK12270 628 LEGIVRAKQDRLDKGE--EGFTVLPILLHGDAA 658 (1228)
T ss_pred hhhhhhhhhhhhcccc--cCCceeEEEEecccc
Confidence 9999999999987433 114455567887654
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=5.1e-34 Score=264.13 Aligned_cols=99 Identities=45% Similarity=0.584 Sum_probs=84.5
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC--CCCCCccccCc-eeeEEeeccCCceEEEEeecCCCcccccCc
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLG-TYIERLNRVTNKNIRLAVVANPSHLEAVDP 77 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~--~~sGDVKYHLG-~s~~~~~~~~gk~i~lsL~~NPSHLEaVnP 77 (127)
+|||||||||||||+||+|||+++||+||.++.... .++||||||+| ++++.. ..|++++++|++||||||||||
T Consensus 245 ~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~--~~~~~~~~~l~~npSHLeav~P 322 (929)
T TIGR00239 245 VVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFT--TDGKLVHLALAFNPSHLEIVSP 322 (929)
T ss_pred EEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccc--cCCCcceeeecCCCcccccccc
Confidence 589999999999999999999999999998865432 37999999999 777644 3678899999999999999999
Q ss_pred eeehhhhhhHhhcCC-CCCCeeEEe
Q psy11220 78 VVQGKTRAEQFYRGD-NEGKKLEYS 101 (127)
Q Consensus 78 Vv~GkaRAkQd~~~d-~~~~kvl~~ 101 (127)
|++|+|||+|++.+| ..+++++++
T Consensus 323 va~G~ArA~q~~~~~~~~~~~~v~v 347 (929)
T TIGR00239 323 VVIGSTRARLDRLNDSPESTKVLAI 347 (929)
T ss_pred hhhhHHHHHHHhcCCcccccceEEE
Confidence 999999999998654 344455554
No 5
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1.9e-33 Score=230.46 Aligned_cols=100 Identities=55% Similarity=0.778 Sum_probs=85.7
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCC---CCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCc
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEA---ADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDP 77 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~---~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnP 77 (127)
+|+|||||||||+|+|++|||+++||+||.++.. ...++||||||+|++.++.+ .+|++|+++|++||||||+++|
T Consensus 42 ~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~-~~~~~~~~~l~~npS~l~~~~p 120 (265)
T cd02016 42 VVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKT-PSGKKVHLSLAPNPSHLEAVNP 120 (265)
T ss_pred EEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCccccc-CCCCeeEEEecCCCcccccccC
Confidence 5899999999999999999999999999988654 22469999999999987664 3588999999999999999999
Q ss_pred eeehhhhhhHhhcCCCCCCeeEEe
Q psy11220 78 VVQGKTRAEQFYRGDNEGKKLEYS 101 (127)
Q Consensus 78 Vv~GkaRAkQd~~~d~~~~kvl~~ 101 (127)
|++|+|+|+|++..+.++++.+++
T Consensus 121 va~G~A~A~k~~~~~~~~~~~v~v 144 (265)
T cd02016 121 VVMGKTRAKQDYRGDGERDKVLPI 144 (265)
T ss_pred eehhHHHHHHHhcCCccCCCeEEE
Confidence 999999999998755444455544
No 6
>KOG0451|consensus
Probab=99.96 E-value=2.8e-31 Score=238.41 Aligned_cols=105 Identities=31% Similarity=0.481 Sum_probs=89.5
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC---CCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCc
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAAD---DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDP 77 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~---~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnP 77 (127)
||||||||||||+|+.+|+.||+.||+|++|..+.+ ...|||.+||-.|.+.+ ..+++++++|++||||||||||
T Consensus 213 viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dyk--g~~~~lhvtMlpNPSHLEAvNP 290 (913)
T KOG0451|consen 213 VIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYK--GLGKKLHVTMLPNPSHLEAVNP 290 (913)
T ss_pred EEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhc--ccCCceEEEecCChhhhhccCc
Confidence 589999999999999999999999999998865433 57999999999887743 4789999999999999999999
Q ss_pred eeehhhhhhHhhcCCCC---------CCeeEEeeceeeechh
Q psy11220 78 VVQGKTRAEQFYRGDNE---------GKKLEYSVNIKIKSMA 110 (127)
Q Consensus 78 Vv~GkaRAkQd~~~d~~---------~~kvl~~~~~~~~~~~ 110 (127)
|+|||||++|...++++ ++.|| |+++|.-|
T Consensus 291 VAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vl---nv~vHGDa 329 (913)
T KOG0451|consen 291 VAMGKTRSRQQSRGEGDYSPDSSAPFGDHVL---NVIVHGDA 329 (913)
T ss_pred hhhcchhHHHHhhcCCCCCCCCcCCCCCceE---EEEEecch
Confidence 99999999999877643 45555 45677543
No 7
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.96 E-value=2.6e-29 Score=232.83 Aligned_cols=100 Identities=44% Similarity=0.613 Sum_probs=86.8
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCC--CCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCce
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALE--AADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPV 78 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~--~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPV 78 (127)
+|+||+||||||+|+|++|||+++||+||.|+. ....++||||||||++.++. ..|+++|+++++||||||+||||
T Consensus 245 ~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~--g~gg~mhi~l~~npShleav~Pv 322 (924)
T PRK09404 245 IVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRE--TDGGEVHLSLAFNPSHLEIVNPV 322 (924)
T ss_pred EEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCcccccc--CCCCeeEeeccCCccccccccCe
Confidence 489999999999999999999999999998875 33357999999999998754 35789999999999999999999
Q ss_pred eehhhhhhHhhcCC-CCCCeeEEee
Q psy11220 79 VQGKTRAEQFYRGD-NEGKKLEYSV 102 (127)
Q Consensus 79 v~GkaRAkQd~~~d-~~~~kvl~~~ 102 (127)
++|+|||+|+..+| .+++++++++
T Consensus 323 a~G~A~A~q~~~~~~~~~~~~v~v~ 347 (924)
T PRK09404 323 VEGSVRARQDRRGDGQDRKKVLPIL 347 (924)
T ss_pred ehhHHHHHHHhcCCcccccceEEEE
Confidence 99999999999766 5556666544
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=97.25 E-value=9e-05 Score=61.33 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=50.0
Q ss_pred eccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehh
Q psy11220 3 SFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGK 82 (127)
Q Consensus 3 iGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~Gk 82 (127)
+.+.||++.++|+. +.|+..+|.||-++. .+.|+... -.... .+..++...++|+|.+ .|++.|.
T Consensus 49 v~~~yR~~~~~la~--g~~~~~~~~e~~g~~---~g~~g~~~-~~~~~-------~~~~~~~~~~~~vg~~--~p~a~G~ 113 (300)
T PF00676_consen 49 VFPYYRDHGHALAR--GIDLEEIFAELLGKA---KGHGGGRH-PLHFS-------DKGLNILGASSPVGAQ--VPIAAGV 113 (300)
T ss_dssp EEECSTTHHHHHHT--TT-HHHHHHHHHTBT---TSTTTTGC-TTEEE-------BTTTTBEEEESSTTTH--HHHHHHH
T ss_pred EEecccchhhhhhc--cccccchhHHhcCcc---cCCCCCcc-ccccc-------cccceeeecccccccc--Cccccch
Confidence 34559999999984 556999999997665 23344333 11111 1234677777888777 9999999
Q ss_pred hhhhHhhc
Q psy11220 83 TRAEQFYR 90 (127)
Q Consensus 83 aRAkQd~~ 90 (127)
|+|.|...
T Consensus 114 A~a~k~~~ 121 (300)
T PF00676_consen 114 ALAIKYRG 121 (300)
T ss_dssp HHHHHHTT
T ss_pred hHhhhhcC
Confidence 99999653
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=95.82 E-value=0.024 Score=46.37 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehhhhh
Q psy11220 6 ILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRA 85 (127)
Q Consensus 6 aHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~GkaRA 85 (127)
.||+.-..|+ .|.|+.+||.|+-+.......-.+..+|++.. ...+....++|-+.-|+++|.+.|
T Consensus 54 ~yR~~~~~la--~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~------------~~~~~~~~g~lG~~~p~a~G~a~a 119 (293)
T cd02000 54 TYRDHGHALA--RGVDLKEMLAELFGKETGPCKGRGGSMHIGDK------------EKNFFGGNGIVGGQVPLAAGAALA 119 (293)
T ss_pred cchhHHHHHH--cCCCHHHHHHHHcCCCCCCCCCCCCCCCCCch------------hcCccccccccccchhHHHHHHHH
Confidence 8999999997 89999999999987665432223366676532 234567789999999999999999
Q ss_pred hHhhc
Q psy11220 86 EQFYR 90 (127)
Q Consensus 86 kQd~~ 90 (127)
.+...
T Consensus 120 ~k~~~ 124 (293)
T cd02000 120 LKYRG 124 (293)
T ss_pred HHHhC
Confidence 98754
No 10
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=94.52 E-value=0.072 Score=46.94 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=52.1
Q ss_pred eeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC-CCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceee
Q psy11220 2 VSFSILAGRLNVLANVCRKPLEQIFTQFAALEAAD-DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQ 80 (127)
Q Consensus 2 ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~-~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~ 80 (127)
|++ .||++.++| ..|.|+.+||+|+-++.... .+.|+ .+|++.... .+...-+.|-..-|+++
T Consensus 141 v~~-~yR~h~~~L--a~G~~~~~~mael~Gk~~g~~~Grgg-smH~~~~~~------------~~~g~~g~lG~~lP~Av 204 (433)
T PLN02374 141 VVS-TYRDHVHAL--SKGVPARAVMSELFGKATGCCRGQGG-SMHMFSKEH------------NLLGGFAFIGEGIPVAT 204 (433)
T ss_pred EEc-cCcChHHhh--hcCCCHHHHHHHHcCCCCCCCCCCCC-cCccCchhh------------CCCCCceeccCchhHHH
Confidence 445 899999999 67999999999998776542 45555 788853221 11123345557789999
Q ss_pred hhhhhhHhhc
Q psy11220 81 GKTRAEQFYR 90 (127)
Q Consensus 81 GkaRAkQd~~ 90 (127)
|.+.|.|...
T Consensus 205 GaA~A~k~~~ 214 (433)
T PLN02374 205 GAAFSSKYRR 214 (433)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 11
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=57.16 E-value=6.8 Score=28.16 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=20.9
Q ss_pred hCCCHHHHhHhhcCCCCCCCCCCCccccCce
Q psy11220 18 CRKPLEQIFTQFAALEAADDGSGDVKYHLGT 48 (127)
Q Consensus 18 l~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~ 48 (127)
||+|++++|.+|+..+-.....|=| |.++
T Consensus 3 lG~~~~~~F~~fd~~PlasASiaQV--h~a~ 31 (119)
T PF03109_consen 3 LGKPIDEIFDEFDPEPLASASIAQV--HRAR 31 (119)
T ss_pred cCCCHHHHHHHCCcchhhheehhhh--eeee
Confidence 7999999999998766544334555 6553
No 12
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=47.76 E-value=26 Score=27.13 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=37.6
Q ss_pred ccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC-CCCCCccccCceeeEE
Q psy11220 4 FSILAGRLNVLANVCRKPLEQIFTQFAALEAAD-DGSGDVKYHLGTYIER 52 (127)
Q Consensus 4 GMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~-~~sGDVKYHLG~s~~~ 52 (127)
|++.|.+-+.|+++|+.++.....+..|..+.. .-.=.+--|+|.|.+.
T Consensus 18 Gi~kr~~~s~LA~iL~Is~ssa~RKL~G~~~ftl~EI~~Ia~~fgvS~d~ 67 (147)
T PF08667_consen 18 GIPKRKHASELADILGISYSSAYRKLNGKSPFTLEEIKKIAKHFGVSPDE 67 (147)
T ss_pred CCcchhhHHHHHHHHCCCHHHHHHHhcCCCCCCHHHHHHHHHHhCcCHHH
Confidence 789999999999999999999999998866543 2234455566666543
No 13
>PF15230 SRRM_C: Serine/arginine repetitive matrix protein C-terminus
Probab=43.31 E-value=8.3 Score=26.53 Aligned_cols=9 Identities=67% Similarity=0.903 Sum_probs=7.2
Q ss_pred cCCCccccc
Q psy11220 67 ANPSHLEAV 75 (127)
Q Consensus 67 ~NPSHLEaV 75 (127)
.-||||||=
T Consensus 43 DSPS~lEaR 51 (66)
T PF15230_consen 43 DSPSHLEAR 51 (66)
T ss_pred CCccccchh
Confidence 479999973
No 14
>PF15380 DUF4607: Domain of unknown function (DUF4607)
Probab=39.09 E-value=12 Score=31.49 Aligned_cols=59 Identities=25% Similarity=0.231 Sum_probs=28.4
Q ss_pred ecCCCcccccCceeehhhhhhHhhcCCCCCCe----------eEEeeceeeechhhhhhchhhhhhhhc
Q psy11220 66 VANPSHLEAVDPVVQGKTRAEQFYRGDNEGKK----------LEYSVNIKIKSMARRQCSEAEVRLEER 124 (127)
Q Consensus 66 ~~NPSHLEaVnPVv~GkaRAkQd~~~d~~~~k----------vl~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (127)
.-||.||||.-==..--+|-+-+-+...+++. =||--+-.=-+.-.--||.+|..+|||
T Consensus 85 svNp~~Lea~G~hi~Rh~rpq~qpl~~~K~~Sgs~aRPfTAIGLCRrsqtp~a~qs~~~s~sE~e~eer 153 (265)
T PF15380_consen 85 SVNPIHLEAAGIHIKRHTRPQNQPLSNSKGNSGSAARPFTAIGLCRRSQTPCASQSASPSNSEPELEER 153 (265)
T ss_pred ccCceeeecceeecccccccccCcCCCCCCCCCCccCccceeeeecccCCCcccccccccccccchhhc
Confidence 45888888865444333443332221111110 144422222223334577788888886
No 15
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=35.98 E-value=93 Score=26.90 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=47.9
Q ss_pred cCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC-CC-CCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehh
Q psy11220 5 SILAGRLNVLANVCRKPLEQIFTQFAALEAAD-DG-SGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGK 82 (127)
Q Consensus 5 MaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~-~~-sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~Gk 82 (127)
-.||+.==.|+ .|.|+..+|+|+-++.... .+ .| ..|++. + .+.++...|+|=+..|++.|.
T Consensus 87 ~~yR~hg~~la--~G~~~~~~~ae~~g~~~g~~~Grgg--smH~~~----------~--~~~~~~~~~~vG~~~p~A~G~ 150 (362)
T PLN02269 87 TAYRDHCTHLG--RGGTVLEVFAELMGRKDGCSRGKGG--SMHFYK----------K--DANFYGGHGIVGAQVPLGAGL 150 (362)
T ss_pred echhhHHHHHH--cCCCHHHHHHHHcCCCCCCCCCCCC--cccccc----------h--hcCccccCchhhccccHHHHH
Confidence 35777765554 5889999999997765432 11 12 334331 1 234556779999999999999
Q ss_pred hhhhHhhc
Q psy11220 83 TRAEQFYR 90 (127)
Q Consensus 83 aRAkQd~~ 90 (127)
|.|.|...
T Consensus 151 A~A~k~~~ 158 (362)
T PLN02269 151 AFAQKYNK 158 (362)
T ss_pred HHHHHHhC
Confidence 99999864
No 16
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.42 E-value=80 Score=28.21 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=37.7
Q ss_pred HhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceee
Q psy11220 16 NVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQ 80 (127)
Q Consensus 16 Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~ 80 (127)
-.+|.|+++|+.-++...+.. | .-+... .+++.+.|..++||.=||.+=..+-
T Consensus 302 ~~lG~~~e~i~~~l~~~~~v~----------G-RmE~v~-~~~~~v~VDyAHnPd~le~~L~~~~ 354 (475)
T COG0769 302 LALGVDLEDILAGLETLKPVP----------G-RMELVN-IGGKLVIVDYAHNPDGLEKALRAVR 354 (475)
T ss_pred HHcCCCHHHHHHHHHhcCCCC----------C-cceEec-CCCCeEEEEeccChHHHHHHHHHHH
Confidence 458999999999887544311 1 223343 3578999999999999988755443
No 17
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=21.16 E-value=49 Score=26.55 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=6.7
Q ss_pred cCCchhhHHHH
Q psy11220 5 SILAGRLNVLA 15 (127)
Q Consensus 5 MaHRGRLNvL~ 15 (127)
+|||| |.|.
T Consensus 2 iAHRG--NTl~ 10 (192)
T cd08584 2 IAHRG--NTIT 10 (192)
T ss_pred Cccch--HHHH
Confidence 58999 7654
No 18
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=20.10 E-value=59 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=18.9
Q ss_pred cCCchhhHHHHHhhCCCHHHHhHhh
Q psy11220 5 SILAGRLNVLANVCRKPLEQIFTQF 29 (127)
Q Consensus 5 MaHRGRLNvL~Nvl~KP~~~iF~eF 29 (127)
++..+.+.-|+..|+-+++.+|...
T Consensus 38 ~~~~~~l~~i~~~~~v~~~~l~~~~ 62 (64)
T PF12844_consen 38 KPSVSTLKKIAEALGVSLDELFDGE 62 (64)
T ss_dssp --BHHHHHHHHHHHTS-HHHHCCCH
T ss_pred CCCHHHHHHHHHHhCCCHHHHhccC
Confidence 4667889999999999999998753
Done!