Query psy11220
Match_columns 127
No_of_seqs 107 out of 669
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 21:15:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgd_A 2-oxoglutarate dehydrog 99.9 1.8E-22 6E-27 185.9 8.3 89 1-91 254-342 (933)
2 2yic_A 2-oxoglutarate decarbox 99.9 6.4E-22 2.2E-26 180.9 7.6 90 1-91 174-266 (868)
3 2xt6_A 2-oxoglutarate decarbox 99.8 3.8E-21 1.3E-25 179.4 7.2 90 1-91 419-511 (1113)
4 1qs0_A 2-oxoisovalerate dehydr 98.4 1.3E-07 4.5E-12 80.0 3.7 70 5-89 130-200 (407)
5 2bfd_A 2-oxoisovalerate dehydr 98.2 4.9E-07 1.7E-11 76.0 3.2 73 2-89 109-181 (400)
6 1umd_A E1-alpha, 2-OXO acid de 97.8 1.9E-05 6.4E-10 65.2 4.2 72 5-90 93-164 (367)
7 2ozl_A PDHE1-A type I, pyruvat 97.3 0.00027 9.1E-09 58.9 5.3 66 6-89 92-159 (365)
8 1w85_A Pyruvate dehydrogenase 97.3 6.4E-05 2.2E-09 62.5 1.1 64 2-89 98-161 (368)
9 3fym_A Putative uncharacterize 25.6 81 0.0028 21.5 3.9 25 9-33 52-76 (130)
10 3di5_A DINB-like protein; stru 19.6 18 0.00061 24.9 -0.5 21 6-26 131-151 (168)
No 1
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.87 E-value=1.8e-22 Score=185.86 Aligned_cols=89 Identities=40% Similarity=0.516 Sum_probs=78.2
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceee
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQ 80 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~ 80 (127)
+|+||+||||+|+|+|++|+|+.+||+||.|+.....+.||||||+|++....+ .|+++++++++|||||+++.|+++
T Consensus 254 ~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~--~gg~~~l~l~~~~shlg~~~p~A~ 331 (933)
T 2jgd_A 254 VVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQT--DGGLVHLALAFNPSHLEIVSPVVI 331 (933)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEE--TTEEEEEEECCCCSSTTCHHHHHH
T ss_pred EEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCccccccc--CCCceEEeecccCcccccccCHHH
Confidence 478999999999999999999999999998875443468999999999887653 477999999999999999999999
Q ss_pred hhhhhhHhhcC
Q psy11220 81 GKTRAEQFYRG 91 (127)
Q Consensus 81 GkaRAkQd~~~ 91 (127)
|.|+|+|+..+
T Consensus 332 G~A~A~~~~~~ 342 (933)
T 2jgd_A 332 GSVRARLDRLD 342 (933)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHhhcc
Confidence 99999998753
No 2
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.85 E-value=6.4e-22 Score=180.93 Aligned_cols=90 Identities=47% Similarity=0.673 Sum_probs=72.6
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC--CCCCCccccCceeeEEeeccCCc-eEEEEeecCCCcccccCc
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLGTYIERLNRVTNK-NIRLAVVANPSHLEAVDP 77 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~--~~sGDVKYHLG~s~~~~~~~~gk-~i~lsL~~NPSHLEaVnP 77 (127)
+|+||+||||+|+|+|++|+|+.+||+||.|+.... .++||||||+|++....+ .+|+ .+++++++|||||+++.|
T Consensus 174 ~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~-~~g~~~v~l~l~~n~s~Lg~~~P 252 (868)
T 2yic_A 174 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQ-MFGDNDIEVSLTANPSHLEAVDP 252 (868)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEEC-SSSSCEEEEEECCCCSSTTTTHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccc-cCCCcceeeeecCCCcccccccc
Confidence 478999999999999999999999999998875432 368999999999887654 2245 899999999999999999
Q ss_pred eeehhhhhhHhhcC
Q psy11220 78 VVQGKTRAEQFYRG 91 (127)
Q Consensus 78 Vv~GkaRAkQd~~~ 91 (127)
+++|.++|.|+..+
T Consensus 253 ~A~G~A~A~k~~~~ 266 (868)
T 2yic_A 253 VLEGLVRAKQDLLD 266 (868)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998754
No 3
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.83 E-value=3.8e-21 Score=179.43 Aligned_cols=90 Identities=47% Similarity=0.673 Sum_probs=71.7
Q ss_pred CeeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC--CCCCCccccCceeeEEeeccCCc-eEEEEeecCCCcccccCc
Q psy11220 1 MVSFSILAGRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLGTYIERLNRVTNK-NIRLAVVANPSHLEAVDP 77 (127)
Q Consensus 1 ~ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~--~~sGDVKYHLG~s~~~~~~~~gk-~i~lsL~~NPSHLEaVnP 77 (127)
+|+||+||||+|+|+|++|+|+.+||+||.|+.... .++||||||+|++....+ .+|+ .+++++++|||||+++.|
T Consensus 419 ~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~-~~g~~~v~l~l~~n~s~Lg~~~p 497 (1113)
T 2xt6_A 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQ-MFGDNDIEVSLTANPSHLEAVDP 497 (1113)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEEC-SSSSCEEEEEECCCCSSTTTTHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccc-cCCCcceeeeecCCCcccccccc
Confidence 478999999999999999999999999998875432 368999999999887653 2245 899999999999999999
Q ss_pred eeehhhhhhHhhcC
Q psy11220 78 VVQGKTRAEQFYRG 91 (127)
Q Consensus 78 Vv~GkaRAkQd~~~ 91 (127)
+++|.++|.|+...
T Consensus 498 ~A~G~A~A~k~~~~ 511 (1113)
T 2xt6_A 498 VLEGLVRAKQDLLD 511 (1113)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998753
No 4
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.41 E-value=1.3e-07 Score=79.99 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=56.6
Q ss_pred cCCchhhHHHHHhhCCCHHHHhHhhcCCCCCC-CCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehhh
Q psy11220 5 SILAGRLNVLANVCRKPLEQIFTQFAALEAAD-DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKT 83 (127)
Q Consensus 5 MaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~-~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~Gka 83 (127)
|+|||+.++|+ .++|+.+||++|.+..... .+. +++||++.. + ..+.++++||.+..|+++|.+
T Consensus 130 ~~yR~~~~~l~--~g~~~~~i~~el~g~~~~~~~G~-g~~~h~~~~-~-----------~~~~~~~g~lG~~lp~AvGaA 194 (407)
T 1qs0_A 130 PTYRQQSILMA--RDVSLVEMICQLLSNERDPLKGR-QLPIMYSVR-E-----------AGFFTISGNLATQFVQAVGWA 194 (407)
T ss_dssp CCSSCHHHHHH--TTCCHHHHHHHHHTCTTCTTTTC-SCTTCCCBG-G-----------GTBCCCCSSSSHHHHHHHHHH
T ss_pred ecccchHHHHh--cCCCHHHHHHHHhCCCCCCCCCC-Cceeecchh-c-----------cCccccccccccchhHHHHHH
Confidence 99999999997 9999999999997754332 222 589999852 1 125678999999999999999
Q ss_pred hhhHhh
Q psy11220 84 RAEQFY 89 (127)
Q Consensus 84 RAkQd~ 89 (127)
.|.|..
T Consensus 195 ~A~k~~ 200 (407)
T 1qs0_A 195 MASAIK 200 (407)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999864
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.23 E-value=4.9e-07 Score=76.00 Aligned_cols=73 Identities=18% Similarity=0.014 Sum_probs=56.8
Q ss_pred eeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeeh
Q psy11220 2 VSFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQG 81 (127)
Q Consensus 2 ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~G 81 (127)
|++ +|||+. +.+..|+|+.++|.+|.+.......-.+++||++... . .+..+++||....|+++|
T Consensus 109 v~~-~yR~~~--~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~------~------~~~~~~g~lG~~lp~AvG 173 (400)
T 2bfd_A 109 VFG-QAREAG--VLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKE------R------HFVTISSPLATQIPQAVG 173 (400)
T ss_dssp EEC-CSCCHH--HHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTT------T------TBCCCCSSTTTHHHHHHH
T ss_pred EEe-cCcCHH--HHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccc------c------CccccCccccccccHHHH
Confidence 555 899997 7778999999999999876443221225899998431 1 167899999999999999
Q ss_pred hhhhhHhh
Q psy11220 82 KTRAEQFY 89 (127)
Q Consensus 82 kaRAkQd~ 89 (127)
.+.|.+..
T Consensus 174 ~AlA~~~~ 181 (400)
T 2bfd_A 174 AAYAAKRA 181 (400)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhh
Confidence 99999854
No 6
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=97.75 E-value=1.9e-05 Score=65.22 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=55.9
Q ss_pred cCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehhhh
Q psy11220 5 SILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTR 84 (127)
Q Consensus 5 MaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~GkaR 84 (127)
++||+ +.+....|+++.++|.+|.+........++.+||++.... .+.++++||.+..|+++|.+.
T Consensus 93 ~s~r~--~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~------------~~~~~~g~lG~~l~~a~G~A~ 158 (367)
T 1umd_A 93 PYYRD--HGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKAL------------NFFTVASPIASHVPPAAGAAI 158 (367)
T ss_dssp CCTTT--HHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTT------------TBCCCCSSTTTTHHHHHHHHH
T ss_pred eCcHH--HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCccccc------------CcCCCCchhhhhhhHHHHHHH
Confidence 79996 9999999999999999997754332222345899974321 245599999999999999999
Q ss_pred hhHhhc
Q psy11220 85 AEQFYR 90 (127)
Q Consensus 85 AkQd~~ 90 (127)
|.+...
T Consensus 159 a~k~~~ 164 (367)
T 1umd_A 159 SMKLLR 164 (367)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 988653
No 7
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=97.30 E-value=0.00027 Score=58.89 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCchhhHHHHHhhCCCHHHHhHhhcCCCCCC--CCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeehhh
Q psy11220 6 ILAGRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKT 83 (127)
Q Consensus 6 aHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~--~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~Gka 83 (127)
.|| .+.+++++|+|+.+||+||.|..... ...|| ||++. . .+..+.+++-+..|+++|.+
T Consensus 92 ~yR--~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~--~H~~~-~-------------~~~~~~g~~G~~lp~A~G~A 153 (365)
T 2ozl_A 92 AYR--AHGFTFTRGLSVREILAELTGRKGGCAKGKGGS--MHMYA-K-------------NFYGGNGIVGAQVPLGAGIA 153 (365)
T ss_dssp CSC--CHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCT--TCCCB-T-------------TBCCCCCSTTTHHHHHHHHH
T ss_pred HHH--HHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCC--CCcCc-c-------------ccCCCcchhhhhhHHHHHHH
Confidence 588 79999999999999999998765432 23677 89842 1 12346688999999999999
Q ss_pred hhhHhh
Q psy11220 84 RAEQFY 89 (127)
Q Consensus 84 RAkQd~ 89 (127)
+|.+..
T Consensus 154 ~A~~~~ 159 (365)
T 2ozl_A 154 LACKYN 159 (365)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999864
No 8
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=97.25 E-value=6.4e-05 Score=62.52 Aligned_cols=64 Identities=11% Similarity=-0.114 Sum_probs=49.8
Q ss_pred eeccCCchhhHHHHHhhCCCHHHHhHhhcCCCCCCCCCCCccccCceeeEEeeccCCceEEEEeecCCCcccccCceeeh
Q psy11220 2 VSFSILAGRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQG 81 (127)
Q Consensus 2 ViGMaHRGRLNvL~Nvl~KP~~~iF~eF~~~~~~~~~sGDVKYHLG~s~~~~~~~~gk~i~lsL~~NPSHLEaVnPVv~G 81 (127)
|++| || .+.+.+..|+|+..+|.+|.|... .|+ +| .+..+..|+|||.+..|+++|
T Consensus 98 v~~~-~R--~~~~~~~~G~~~~~~~~el~G~~~----G~~--~h---------------~~~~~~~~~g~lG~~lp~AvG 153 (368)
T 1w85_A 98 ILPG-YR--DVPQIIWHGLPLYQAFLFSRGHFH----GNQ--IP---------------EGVNVLPPQIIIGAQYIQAAG 153 (368)
T ss_dssp EECC-SS--CHHHHHHTTCCHHHHHHHHHTCGG----GGC--CC---------------TTCCBCCCCCSTTHHHHHHHH
T ss_pred EEec-ch--hHHHHHhcCCCHHHHHHHHCCCCC----CCC--CC---------------cccccCCCccccCccccHHHH
Confidence 6788 75 467889999999999999977542 011 23 123577899999999999999
Q ss_pred hhhhhHhh
Q psy11220 82 KTRAEQFY 89 (127)
Q Consensus 82 kaRAkQd~ 89 (127)
.+.|.+..
T Consensus 154 ~A~A~~~~ 161 (368)
T 1w85_A 154 VALGLKMR 161 (368)
T ss_dssp HHHHHHHT
T ss_pred HHHHhHhh
Confidence 99999864
No 9
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.61 E-value=81 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.1
Q ss_pred hhhHHHHHhhCCCHHHHhHhhcCCC
Q psy11220 9 GRLNVLANVCRKPLEQIFTQFAALE 33 (127)
Q Consensus 9 GRLNvL~Nvl~KP~~~iF~eF~~~~ 33 (127)
|-|.-++..||-+++++|.+++...
T Consensus 52 ~~l~~ia~~L~v~~~~l~~~~~~~~ 76 (130)
T 3fym_A 52 GFIRKYASVVNIEPNQLIQAHQDEI 76 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 5578899999999999999996543
No 10
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=19.64 E-value=18 Score=24.94 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCchhhHHHHHhhCCCHHHHh
Q psy11220 6 ILAGRLNVLANVCRKPLEQIF 26 (127)
Q Consensus 6 aHRGRLNvL~Nvl~KP~~~iF 26 (127)
-|||-+.++...+|.++..+|
T Consensus 131 hHrGQi~~~lr~~G~~~P~~y 151 (168)
T 3di5_A 131 HHRGQMTVLMRQAGLTVPGVY 151 (168)
T ss_dssp HHHHHHHHHHHHTTCCCCCCC
T ss_pred HhHHHHHHHHHHcCCCCCccc
Confidence 499999999999999986654
Done!