RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11220
(127 letters)
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 137 bits (347), Expect = 2e-41
Identities = 54/92 (58%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
Query: 9 GRLNVLANVCRKPLEQIFTQF---AALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAV 65
GRLNVLANV KPLEQIF++F + D+GSGDVKYHLG +R K + L++
Sbjct: 50 GRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPS-GKKVHLSL 108
Query: 66 VANPSHLEAVDPVVQGKTRAEQFYRGDNEGKK 97
NPSHLEAV+PVV GKTRA+Q YRGD E K
Sbjct: 109 APNPSHLEAVNPVVMGKTRAKQDYRGDGERDK 140
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 117 bits (297), Expect = 7e-32
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 9 GRLNVLANVCRKPLEQIFTQFA--ALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVV 66
GRLNVL NV KP +F +F GSGDVKYHLG +R + L++
Sbjct: 253 GRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDR--ETDGGEVHLSLA 310
Query: 67 ANPSHLEAVDPVVQGKTRAEQFYRGDNEGKK 97
NPSHLE V+PVV+G RA Q RGD + +K
Sbjct: 311 FNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 115 bits (291), Expect = 4e-31
Identities = 44/89 (49%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 9 GRLNVLANVCRKPLEQIFTQFAALEAADDGSGDVKYHLGTYIERLNRVTNKNIRLAVVAN 68
GRLNVL NV KP IF +F A D SGDVKYHLG +R + + L++ N
Sbjct: 239 GRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDR--QTDGGKVHLSLAFN 296
Query: 69 PSHLEAVDPVVQGKTRAEQFYRGDNEGKK 97
PSHLE V+PVV+G RA+Q GD E K
Sbjct: 297 PSHLEIVNPVVEGSVRAKQDRLGDTERDK 325
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 106 bits (268), Expect = 5e-28
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 9/84 (10%)
Query: 9 GRLNVLANVCRKPLEQIFTQF--AALEAADDGSGDVKYHLG---TYIERLNRVTNKNIRL 63
GRLNVLAN+ KP QIF +F + GSGDVKYHLG T+ ++ I++
Sbjct: 557 GRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFT----QMFGDEIKV 612
Query: 64 AVVANPSHLEAVDPVVQGKTRAEQ 87
++ ANPSHLEAVDPV++G RA+Q
Sbjct: 613 SLAANPSHLEAVDPVLEGIVRAKQ 636
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 91.1 bits (226), Expect = 1e-22
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 9 GRLNVLANVCRKPLEQIFTQFAALEAAD--DGSGDVKYHLGTYIERLNRVTNKNIRLAVV 66
GRLNVL NV KP E IF++FA + DG+GDVKYH+G + K + LA+
Sbjct: 253 GRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFT-TDGKLVHLALA 311
Query: 67 ANPSHLEAVDPVVQGKTRAEQFYRGDNEGK 96
NPSHLE V PVV G TRA D+
Sbjct: 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPES 341
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 25 IFTQFAALEAADDGSGDVKYHLGTYIERLNRVTN 58
+ FAALEA + + HLG I R+ +
Sbjct: 282 LLVIFAALEAFEPLAPGAFQHLGQVIASARRLND 315
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 27.4 bits (61), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 27 TQFAALEAADDGSGDVKYHLGTYIERLNRVTNK 59
+Q+AALEA G D K Y +R + V N+
Sbjct: 270 SQYAALEALTAGKDDAKMMRHQYKKRRDYVYNR 302
>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase. Malate dehydrogenase (MDH) is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. MDHs belong to the
NAD-dependent, lactate dehydrogenase (LDH)-like,
2-hydroxycarboxylate dehydrogenase family, which also
includes the GH4 family of glycoside hydrolases. They
are part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 323
Score = 26.5 bits (59), Expect = 4.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 53 LNRVTNKNIRLAVVANPSHLEAV 75
LN+V +++ VV NP++ A+
Sbjct: 112 LNKVAKPTVKVLVVGNPANTNAL 134
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 26.2 bits (59), Expect = 4.6
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 26 FTQFAALEAADDGSGDVKYHLGTYIERLNRV 56
Q+AA+ A + +V+ + ER + +
Sbjct: 274 IAQYAAVAALNGPQDEVEEMRQAFEERRDLM 304
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 25.9 bits (57), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 28 QFAALEAADDGSGDVKYHLGTYIERLN 54
QFAALEA G+ DV +Y +R N
Sbjct: 264 QFAALEALRAGNDDVIRMRDSYRKRRN 290
>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent.
This model represents the NADP-dependent malate
dehydrogenase found in plants, mosses and green algae
and localized to the chloroplast. Malate dehydrogenase
converts oxaloacetate into malate, a critical step in
the C4 cycle which allows circumvention of the effects
of photorespiration. Malate is subsequenctly transported
from the chloroplast to the cytoplasm (and then to the
bundle sheath cells in C4 plants). The plant and moss
enzymes are light regulated via cysteine disulfide
bonds. The enzyme from Sorghum has been crystallized.
Length = 387
Score = 25.7 bits (56), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 53 LNRVTNKNIRLAVVANPSHLEAV 75
LN V +KN ++ VV NP + A+
Sbjct: 156 LNAVASKNCKVLVVGNPCNTNAL 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,442,369
Number of extensions: 569515
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 18
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)