RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11220
         (127 letters)



>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
           protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 142

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 80  QGKTRAEQFYRG--DNEGKKLEYSVNIKIKSMARRQCSEAEVR 120
            GKTR  ++Y    D+E +KL   V+  +     +  +  E R
Sbjct: 11  AGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFR 53


>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus
           [TaxId: 1396]}
          Length = 245

 Score = 25.1 bits (54), Expect = 2.7
 Identities = 2/37 (5%), Positives = 13/37 (35%)

Query: 85  AEQFYRGDNEGKKLEYSVNIKIKSMARRQCSEAEVRL 121
            + ++      ++       ++  M  ++  +A+   
Sbjct: 195 TKDWFVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVT 231


>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA
           polymerases {Bacteriophage T4 [TaxId: 10665]}
          Length = 372

 Score = 24.9 bits (53), Expect = 3.6
 Identities = 2/22 (9%), Positives = 8/22 (36%)

Query: 14  LANVCRKPLEQIFTQFAALEAA 35
           ++   + P   + +     +A 
Sbjct: 343 MSYYAKMPFSGVMSPIKTWDAI 364


>d1w0na_ b.18.1.28 (A:) Endo-1,4-beta-xylanase D {Paenibacillus
          polymyxa [TaxId: 1406]}
          Length = 120

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 58 NKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRG 91
            NI +   ++ +    VD V+ G T     + G
Sbjct: 45 THNISVRGASSNAGTAKVDLVIGGVTVGSFNFTG 78


>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 96

 Score = 23.0 bits (49), Expect = 8.9
 Identities = 7/35 (20%), Positives = 9/35 (25%)

Query: 84  RAEQFYRGDNEGKKLEYSVNIKIKSMARRQCSEAE 118
           RAE         K LE ++             E  
Sbjct: 31  RAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELR 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,059
Number of extensions: 18943
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 9
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)