BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11221
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
FE FL K+ +KRF LEG E +IP M VID+ E G++ VV+ MPHRG N+++ G
Sbjct: 133 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVG 192
Query: 87 QGLQKVPRLFSQN-----PQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLN 141
+ ++ F N +GD+++ + +T T++ F GD ++L
Sbjct: 193 KPYSQIFSEFEGNLNPSQAHGSGDVKYHL--GATGTYIQMF---------GDNDIEVSLT 241
Query: 142 CWPRAMFLSTPV 153
P + PV
Sbjct: 242 ANPSHLEAVDPV 253
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
FE FL K+ +KRF LEG E +IP M VID+ E G++ VV+ MPHRG N+++ G
Sbjct: 378 FETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVG 437
Query: 87 QGLQKVPRLFSQN-----PQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLN 141
+ ++ F N +GD+++ + +T T++ F GD ++L
Sbjct: 438 KPYSQIFSEFEGNLNPSQAHGSGDVKYHL--GATGTYIQMF---------GDNDIEVSLT 486
Query: 142 CWPRAMFLSTPV 153
P + PV
Sbjct: 487 ANPSHLEAVDPV 498
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
E +L K+ KRF LEG + LIP +K++I + G VV+GM HRG N++ G
Sbjct: 213 LERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLG 272
Query: 87 QGLQKVPRLFSQNPQNN---GDIRHFVFFSSTPTFLHTFDWIKASQTQGDRG-PHLTLNC 142
+ Q + F+ + + GD+++ + FS S Q D G HL L
Sbjct: 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFS--------------SDFQTDGGLVHLALAF 318
Query: 143 WPRAMFLSTPVCI 155
P + + +PV I
Sbjct: 319 NPSHLEIVSPVVI 331
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 29 FEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKSTELGVESVVMGMPHRG--NLISETTG 86
E +L K+ KRF LEG + LIP +K++I + G VV+GM HRG N++ G
Sbjct: 213 LERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLG 272
Query: 87 QGLQKVPRLFSQNPQNN---GDIRHFVFFSSTPTFLHTFDWIKASQTQGDRG-PHLTLNC 142
+ Q + F+ + + GD+++ + FS S Q D G HL L
Sbjct: 273 KKPQDLFDEFAGKHKEHLGTGDVKYHMGFS--------------SDFQTDGGLVHLALAF 318
Query: 143 WPRAMFLSTPVCI 155
P + + +PV I
Sbjct: 319 NPSHLEIVSPVVI 331
>pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 272
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 35 KKWSSEKRFGLEGCEILIPAMKQVI 59
+ W+ R GLEGC+ L P ++Q +
Sbjct: 235 ESWAEAVRLGLEGCQRLYPVLQQSL 259
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 1 MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVID 60
++IF+ ++S E +L+ N FE LA+ + R L+PA ++
Sbjct: 165 VKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVL 224
Query: 61 KSTELGVESVV 71
ST + +E V+
Sbjct: 225 DSTSMSIEQVI 235
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 1 MRIFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVID 60
++IF+ ++S E +L+ + FE LA+ + R L+PA ++
Sbjct: 143 VKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVL 202
Query: 61 KSTELGVESVV 71
ST L +E V+
Sbjct: 203 DSTTLSIEQVI 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,146,009
Number of Sequences: 62578
Number of extensions: 181549
Number of successful extensions: 336
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)