RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11221
         (202 letters)



>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus
          subtilis [TaxId: 1423]}
          Length = 180

 Score = 27.4 bits (60), Expect = 0.85
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 55 MKQVIDKSTELGVESVVMGMPHRGN 79
          ++ +I K TELG  + +     R  
Sbjct: 20 LEWIIQKGTELGAHAFIPFQAARSV 44


>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
          {Haemophilus influenzae [TaxId: 727]}
          Length = 174

 Score = 26.6 bits (58), Expect = 1.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 55 MKQVIDKSTELGVESVVMGMPHR 77
          M+  I KS ELGV  +      R
Sbjct: 19 MEFTIQKSVELGVNVITPLWSER 41


>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 88

 Score = 24.2 bits (52), Expect = 5.1
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 3  IFVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDK 61
            V++++   +        A F  +E  A L            +G + L    +  + +
Sbjct: 38 NVVMTDAGGFIEVQGTAEGAPFRPAELNAMLE--------LAQQGMQELFELQRAALAE 88


>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 151

 Score = 25.1 bits (54), Expect = 5.2
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 86  GQGLQKVPRLFSQNPQNNGDIRHFVFFSSTPTFLHTFDWIKASQTQGDRGPHLTLNCWPR 145
           G+ ++ +PR  ++      DI  F + ++    LHT          G       L     
Sbjct: 13  GEKIEGLPRTVTE-----TDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQGMLVLSIA 67

Query: 146 AMFLSTPVCILHETFRPIFTPIIFFFFALSHVQMGSAFDIDLSISFRVIALRPTG 200
              +   +   ++    I    I     L  V +G      ++ S  V+  +   
Sbjct: 68  LGMVDQVILSNYDVSSVIAFFGIKDVRFLRPVFIGDT----IAASAEVVEKQDFD 118


>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 24.2 bits (52), Expect = 5.9
 Identities = 6/61 (9%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 4  FVISNSSEIVSPLLLRSSATFSNSEFEAFLAKKWSSEKRFGLEGCEILIPAMKQVIDKST 63
          F + +       L+  +   +S++E +  LA              + +    ++ + +  
Sbjct: 37 FALDSVERK--LLMSSTKGLYSDTELQQCLA--------AAQAASQHVFRFYRESLQRRY 86

Query: 64 E 64
           
Sbjct: 87 S 87


>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657
          (TT1575) {Thermus thermophilus [TaxId: 274]}
          Length = 162

 Score = 24.3 bits (52), Expect = 9.0
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 55 MKQVIDKSTELGVESVV 71
          + +V+  +TELG   + 
Sbjct: 19 LAEVVRAATELGATRIQ 35


>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262
          {Pseudomonas fluorescens [TaxId: 294]}
          Length = 155

 Score = 24.3 bits (53), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 19 RSSATFSNS--EFEAFLAKKWSSEKRFGL 45
          R+ A F+++  E +AFL +KW+ E  + L
Sbjct: 45 RNRAEFAHNREEAKAFLTRKWAKELDYRL 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 733,896
Number of extensions: 31678
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 10
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)