Query psy11223
Match_columns 192
No_of_seqs 111 out of 199
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:19:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3614|consensus 100.0 8.4E-66 1.8E-70 508.2 15.7 189 2-190 90-284 (1381)
2 TIGR00730 conserved hypothetic 94.8 0.13 2.7E-06 42.6 7.2 66 32-105 2-67 (178)
3 TIGR00725 conserved hypothetic 93.8 0.29 6.4E-06 39.6 7.1 63 32-105 3-65 (159)
4 COG1611 Predicted Rossmann fol 84.0 4.9 0.00011 34.0 7.2 71 29-107 13-83 (205)
5 cd02189 delta_tubulin The tubu 81.6 4.6 0.0001 37.8 6.7 93 7-102 58-167 (446)
6 cd02186 alpha_tubulin The tubu 79.4 7.8 0.00017 36.2 7.4 95 7-103 65-173 (434)
7 PLN00220 tubulin beta chain; P 72.0 17 0.00037 34.0 7.6 94 7-103 64-172 (447)
8 cd02188 gamma_tubulin Gamma-tu 70.2 13 0.00029 34.7 6.4 94 7-103 63-172 (431)
9 PLN00222 tubulin gamma chain; 65.7 16 0.00034 34.5 6.0 94 7-103 65-174 (454)
10 cd02190 epsilon_tubulin The tu 62.8 32 0.0007 31.5 7.3 93 7-102 33-140 (379)
11 TIGR02826 RNR_activ_nrdG3 anae 58.3 44 0.00094 26.6 6.5 58 10-76 45-102 (147)
12 PTZ00387 epsilon tubulin; Prov 56.6 37 0.00081 32.2 6.7 93 8-102 66-172 (465)
13 PF00091 Tubulin: Tubulin/FtsZ 54.7 31 0.00068 28.7 5.4 95 7-103 58-166 (216)
14 cd02187 beta_tubulin The tubul 54.1 43 0.00094 31.1 6.7 95 6-103 62-171 (425)
15 PTZ00010 tubulin beta chain; P 52.8 41 0.00088 31.6 6.3 95 6-103 63-172 (445)
16 PTZ00335 tubulin alpha chain; 51.6 43 0.00092 31.5 6.2 92 9-103 68-174 (448)
17 PRK13660 hypothetical protein; 49.5 86 0.0019 26.2 7.1 65 37-103 7-80 (182)
18 cd06059 Tubulin The tubulin su 48.1 63 0.0014 29.4 6.6 95 7-103 23-131 (382)
19 KOG0025|consensus 44.6 16 0.00035 33.4 2.2 39 64-113 161-199 (354)
20 PRK11864 2-ketoisovalerate fer 43.0 1.2E+02 0.0027 27.2 7.5 65 2-70 172-236 (300)
21 PLN00221 tubulin alpha chain; 41.1 77 0.0017 29.9 6.2 78 9-87 68-160 (450)
22 cd00286 Tubulin_FtsZ Tubulin/F 40.9 1.5E+02 0.0032 26.1 7.7 94 7-103 23-131 (328)
23 COG1493 HprK Serine kinase of 39.8 65 0.0014 29.3 5.2 50 12-74 66-115 (308)
24 PF06258 Mito_fiss_Elm1: Mitoc 39.7 95 0.0021 27.7 6.3 60 26-87 144-204 (311)
25 PRK11121 nrdG anaerobic ribonu 38.7 1.1E+02 0.0024 24.3 6.0 41 30-74 66-110 (154)
26 KOG2170|consensus 38.1 33 0.00071 31.5 3.1 27 14-40 92-120 (344)
27 cd05126 Mth938 Mth938 domain. 37.5 79 0.0017 24.3 4.8 41 9-54 44-84 (117)
28 PF03584 Herpes_ICP4_N: Herpes 37.0 37 0.00079 28.3 3.0 70 12-87 58-129 (173)
29 COG3510 CmcI Cephalosporin hyd 35.6 32 0.0007 29.8 2.5 43 128-170 144-211 (237)
30 PF06309 Torsin: Torsin; Inte 35.4 39 0.00084 26.8 2.8 27 14-40 35-63 (127)
31 PLN02235 ATP citrate (pro-S)-l 31.9 1.4E+02 0.0031 28.2 6.4 70 2-75 299-382 (423)
32 PF07240 Turandot: Stress-indu 31.3 23 0.00049 26.3 0.8 32 154-185 28-59 (85)
33 PF07819 PGAP1: PGAP1-like pro 31.0 36 0.00078 28.7 2.1 41 8-48 129-176 (225)
34 PLN02689 Bifunctional isoaspar 30.5 88 0.0019 28.4 4.6 52 31-85 4-57 (318)
35 PHA00026 cp coat protein 29.7 42 0.00091 26.0 2.1 33 137-169 3-36 (129)
36 COG1139 Uncharacterized conser 29.7 96 0.0021 29.6 4.8 27 135-162 282-308 (459)
37 PRK11865 pyruvate ferredoxin o 28.6 3.3E+02 0.0071 24.5 7.9 63 3-69 177-239 (299)
38 cd00411 Asparaginase Asparagin 28.6 1.9E+02 0.0041 25.9 6.4 42 43-86 59-100 (323)
39 PF06908 DUF1273: Protein of u 28.5 1.8E+02 0.0039 23.9 5.8 55 47-103 26-80 (177)
40 PF08659 KR: KR domain; Inter 28.1 76 0.0017 25.3 3.5 34 64-101 1-34 (181)
41 PF05193 Peptidase_M16_C: Pept 27.1 59 0.0013 24.3 2.5 41 11-53 2-42 (184)
42 PLN03226 serine hydroxymethylt 27.1 1.3E+02 0.0028 28.4 5.3 55 11-77 170-225 (475)
43 PF05301 Mec-17: Touch recepto 26.9 54 0.0012 25.8 2.3 24 6-29 81-104 (120)
44 PF06719 AraC_N: AraC-type tra 26.6 1.5E+02 0.0031 23.4 4.8 55 3-63 71-128 (155)
45 cd06559 Endonuclease_V Endonuc 25.9 71 0.0015 27.1 3.0 43 51-102 76-129 (208)
46 cd01782 AF6_RA_repeat1 Ubiquit 25.1 1.3E+02 0.0028 23.5 4.0 34 3-36 38-76 (112)
47 PRK05465 ethanolamine ammonia- 24.8 2.9E+02 0.0063 24.5 6.7 64 22-86 104-170 (260)
48 PRK09722 allulose-6-phosphate 24.7 4.5E+02 0.0097 22.6 7.8 74 5-83 113-189 (229)
49 cd00248 Mth938-like Mth938-lik 24.5 2E+02 0.0043 21.6 5.0 41 9-54 37-77 (109)
50 cd02202 FtsZ_type2 FtsZ is a G 24.2 5.2E+02 0.011 23.4 8.5 91 6-103 34-139 (349)
51 cd05560 Xcc1710_like Xcc1710_l 23.9 2.1E+02 0.0045 21.5 5.0 40 9-54 38-77 (109)
52 PRK08883 ribulose-phosphate 3- 23.8 4.5E+02 0.0097 22.2 7.8 66 5-75 111-179 (220)
53 PF00710 Asparaginase: Asparag 23.6 2.2E+02 0.0048 25.2 5.8 57 29-87 39-95 (313)
54 PRK13758 anaerobic sulfatase-m 22.1 3.7E+02 0.0079 23.8 7.0 69 11-86 39-114 (370)
55 cd04702 ASRGL1_like ASRGL1_lik 21.9 75 0.0016 28.2 2.5 39 32-72 3-41 (261)
56 PRK13520 L-tyrosine decarboxyl 21.6 2.8E+02 0.0062 23.9 6.1 55 11-76 139-193 (371)
57 PF08459 UvrC_HhH_N: UvrC Heli 21.4 57 0.0012 26.5 1.5 48 48-101 61-112 (155)
58 PRK10226 isoaspartyl peptidase 21.2 1.6E+02 0.0034 26.7 4.5 40 32-71 5-47 (313)
59 PF00106 adh_short: short chai 20.6 1.1E+02 0.0024 23.0 2.9 22 65-87 2-23 (167)
60 cd00196 UBQ Ubiquitin-like pro 20.6 1.5E+02 0.0032 17.1 3.0 37 5-41 12-48 (69)
61 PTZ00235 DNA polymerase epsilo 20.2 1.2E+02 0.0026 27.3 3.5 30 136-166 107-145 (291)
No 1
>KOG3614|consensus
Probab=100.00 E-value=8.4e-66 Score=508.24 Aligned_cols=189 Identities=55% Similarity=0.937 Sum_probs=181.7
Q ss_pred cceEEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHH
Q psy11223 2 LQYVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVG 81 (192)
Q Consensus 2 a~yiRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG 81 (192)
|||||+|+||+|+.|++||+++|+|+.|+|||||+||++||+|+|||+++|||||+||||||||||||||+++|||||||
T Consensus 90 akyiR~S~dt~P~~i~hLm~k~W~l~~P~LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg 169 (1381)
T KOG3614|consen 90 AKYIRVSYDTDPGAILHLMTKEWQLEVPKLVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVG 169 (1381)
T ss_pred ceeEEeCCCCChHHHHHHHHHHhCcCCCcEEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCC-ceeEEeeccccceeccccccCCCCCcccccccCCCCCcccccCCCcEEEEeeCCCCCCCChhHHHHH
Q psy11223 82 DALLMERSQRSG-RVVSIGIAPWGIVENNHELIGHNKDVPYHSISSPRSKFAVLNNRHAYFLLVDNGTAGKYGAEIILRR 160 (192)
Q Consensus 82 ~Av~d~~s~~~~-kv~~IGIApWG~V~~r~~Li~~~~~~p~~~~~~~~~~~~~Ld~nHshFlLVD~Gt~~~~G~e~~lR~ 160 (192)
+|++||++.+++ ||++|||||||+|+|||+||+.+...+|+..+++.++...||+||||||||||||+|+||+|++||+
T Consensus 170 ~Al~dh~~~s~~~~ivaiGiApWGvv~nr~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~ 249 (1381)
T KOG3614|consen 170 SALRDHSLASSGGKIVAIGIAPWGIVKNRDDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRL 249 (1381)
T ss_pred HHHHhccchhccCceEEEeeccceeeechhhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHH
Confidence 999999876665 9999999999999999999998888888888888889999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCceeeec-----CCCCCcccc
Q psy11223 161 KLEKYISNQKLHPGKSKIVGA-----KGGENGEPL 190 (192)
Q Consensus 161 ~LE~~is~~~~~~~~~~~v~~-----~~~~~~~~~ 190 (192)
+||+|||+|+++.+..++||| |||||++-.
T Consensus 250 ~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~nti~~ 284 (1381)
T KOG3614|consen 250 RLEKYISLQKINSGGTGKIPVVCLVLEGGPNTLAI 284 (1381)
T ss_pred hchhhHhhhccCCCCCCccceEEEEecCCchHHHH
Confidence 999999999999988889999 999998744
No 2
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=94.82 E-value=0.13 Score=42.61 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=46.0
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccccc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGI 105 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~ 105 (192)
.|+|.||++.-.-++ ..+.-++ |-++.-..|-=++|||-+.|+|+.+.+++++.. + ..|||.|-..
T Consensus 2 ~i~V~~~s~~~~~~~-~~~~A~~-lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g----G--~viGi~p~~l 67 (178)
T TIGR00730 2 TVCVYCGSSPGGNAA-YKELAAE-LGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG----G--TAVGVNPSGL 67 (178)
T ss_pred EEEEECcCCCCCCcH-HHHHHHH-HHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC----C--eEEEecchhh
Confidence 589999987644333 3333333 444444458889999999999999999998753 2 3699998754
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=93.77 E-value=0.29 Score=39.58 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=44.2
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccccc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGI 105 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~ 105 (192)
.|+|.|+.+ ..+...+.-++ |-+.....|.-|++|| ..|+|..+.++..+.. + .+|||-|-+.
T Consensus 3 ~I~V~gss~---~~~~~~~~A~~-lg~~La~~g~~lv~Gg-~~GlM~a~a~ga~~~g----g--~viGVlp~~l 65 (159)
T TIGR00725 3 QIGVIGSSN---KSEELYEIAYR-LGKELAKKGHILINGG-RTGVMEAVSKGAREAG----G--LVVGILPDED 65 (159)
T ss_pred EEEEEeCCC---CChHHHHHHHH-HHHHHHHCCCEEEcCC-chhHHHHHHHHHHHCC----C--eEEEECChhh
Confidence 589999987 25555555555 5555555687777755 4599999999997753 2 3589988654
No 4
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=84.01 E-value=4.9 Score=33.97 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecccccee
Q psy11223 29 PKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIVE 107 (192)
Q Consensus 29 P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~V~ 107 (192)
.---++|.+|...-..+....+.-++ |-++.-.-|.-|+||| ..|||..+.+...+.. -..|||-|=....
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~-lg~~la~~g~~V~tGG-~~GiMea~~~gA~~~g------g~~vGi~p~~~~~ 83 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARE-LGRELAKRGLLVITGG-GPGVMEAVARGALEAG------GLVVGILPGLLHE 83 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEeCC-chhhhhHHHHHHHHcC------CeEEEecCCCchh
Confidence 33456667776654444445555555 6666555677777777 5699999999998754 2578988865544
No 5
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=81.63 E-value=4.6 Score=37.83 Aligned_cols=93 Identities=18% Similarity=0.385 Sum_probs=63.4
Q ss_pred eeCCCCHHHHHHHHHhh----hCCCCCCeEEEEecCCCCCC-----C----cHHHHHHHHHHHHHHhhhcCcEEEe----
Q psy11223 7 LSYDTRPENILQLFTRE----WSLELPKLLITVQGGKANFE-----L----QPKLKKVLRKGLLKAAKTTGAWVFT---- 69 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~----W~l~~P~LVISV~GG~~~f~-----l----~~~l~~~f~~GL~kaA~sTgaWIiT---- 69 (192)
|--|++|.+|-+++... |.+.+.+++..--|-..||. . .....+.+|+ .+..+++...-+++
T Consensus 58 v~iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~-~~E~cd~~~gf~~~~sl~ 136 (446)
T cd02189 58 VLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRK-EVEKCDSFEGFLVLHSLA 136 (446)
T ss_pred eecCCCchHHHHhhcCCCCcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHH-HHHhCCCccceEEEecCC
Confidence 34688999999998743 88888887777656556665 2 2444455666 55666666666665
Q ss_pred CCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 70 GGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 70 gG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
|||=.|+.-.+-++++|.-.+ .-+.++.|.|
T Consensus 137 GGtGSG~gs~l~e~l~d~y~~--~~~~~~~v~P 167 (446)
T cd02189 137 GGTGSGLGSRVTELLRDEYPE--SLLLNIVVWP 167 (446)
T ss_pred CCcchHHHHHHHHHHHHhcCc--cceeeeeccC
Confidence 788899999999999985321 1245666666
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=79.41 E-value=7.8 Score=36.17 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=60.5
Q ss_pred eeCCCCHHHHHHHHHhhhC-CCCCCeEEEEecCCCC------CCCcHHHHHHHHHHHHHHhhhcC---cEE----EeCCc
Q psy11223 7 LSYDTRPENILQLFTREWS-LELPKLLITVQGGKAN------FELQPKLKKVLRKGLLKAAKTTG---AWV----FTGGT 72 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~~~------f~l~~~l~~~f~~GL~kaA~sTg---aWI----iTgG~ 72 (192)
+--|++|.++-+++...++ |=.|+-+++=.+|+.| ...-+.+.+.+..-+.|.++..+ .-+ +.|||
T Consensus 65 v~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGT 144 (434)
T cd02186 65 VFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGT 144 (434)
T ss_pred cccCCcHHHHHhhccCccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCc
Confidence 4468899999999876554 5566656666667766 33334444444444555555544 344 45788
Q ss_pred ccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 73 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 73 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
-+|+.-.+-++++|.=.+ .-+.+.+|.|-
T Consensus 145 GSGlgs~l~e~l~d~y~~--~~~~~~~v~P~ 173 (434)
T cd02186 145 GSGFGSLLLERLSVDYGK--KSKLEFTVYPS 173 (434)
T ss_pred chhHHHHHHHHHHHhcCc--cceeeEEEeCC
Confidence 899999999999985321 12456666553
No 7
>PLN00220 tubulin beta chain; Provisional
Probab=71.99 E-value=17 Score=34.00 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=61.3
Q ss_pred eeCCCCHHHHHHHHHhhhC-CCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy11223 7 LSYDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 71 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~-~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG 71 (192)
+--|++|..+-+++...|+ +=.|+-+++=..|+ .||. +...+.+.+|+ .+..+++...-+++ ||
T Consensus 64 v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~-~~E~cd~l~gf~~~~sl~GG 142 (447)
T PLN00220 64 VLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAENCDCLQGFQVCHSLGGG 142 (447)
T ss_pred EecCCcHHHHHHHhcCccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHH-HHHhCcCcCceEEEEecCCC
Confidence 4468899999999988886 44565555555555 4443 22334455666 55556666677776 67
Q ss_pred cccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 72 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 72 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
|-+|+.-.+-++++|.-.+ .-+.+.+|.|-
T Consensus 143 TGSG~gs~l~~~l~~~y~~--~~~~~~~v~P~ 172 (447)
T PLN00220 143 TGSGMGTLLISKIREEYPD--RMMLTFSVFPS 172 (447)
T ss_pred ccccHHHHHHHHHHHhccc--cceeeeEEECC
Confidence 7799999999999985321 12456677664
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=70.22 E-value=13 Score=34.71 Aligned_cols=94 Identities=16% Similarity=0.331 Sum_probs=60.5
Q ss_pred eeCCCCHHHHHHHHHhhhC--CCCCCeEEEEec-CC-CCCC--------CcHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy11223 7 LSYDTRPENILQLFTREWS--LELPKLLITVQG-GK-ANFE--------LQPKLKKVLRKGLLKAAKTTGAWVFT----G 70 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~--l~~P~LVISV~G-G~-~~f~--------l~~~l~~~f~~GL~kaA~sTgaWIiT----g 70 (192)
|--|++|..+-+++....+ +.+-+++..-.| |+ .||. +...+.+.+|+ ++..+++...-+++ |
T Consensus 63 v~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~-~~E~cd~l~gf~i~~SlgG 141 (431)
T cd02188 63 ILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDR-EADGSDSLEGFVLCHSIAG 141 (431)
T ss_pred eeccCCcchhhhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcceeEEEecCCC
Confidence 3358899999999875543 555555555552 44 4553 33455566666 55556666777765 6
Q ss_pred CcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 71 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 71 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
||-.|+.-.+-++++|.-.+ .-+.+++|-|-
T Consensus 142 GTGSG~gs~l~e~L~d~y~~--~~~~~~~V~P~ 172 (431)
T cd02188 142 GTGSGMGSYLLERLNDRYPK--KLIQTYSVFPN 172 (431)
T ss_pred CcchhHHHHHHHHHHhHcCc--ceeeeEEecCC
Confidence 77789999999999985321 22556777663
No 9
>PLN00222 tubulin gamma chain; Provisional
Probab=65.73 E-value=16 Score=34.50 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=62.9
Q ss_pred eeCCCCHHHHHHHHHhhhC--CCCCCeEEEEec-CC-CCCC--------CcHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy11223 7 LSYDTRPENILQLFTREWS--LELPKLLITVQG-GK-ANFE--------LQPKLKKVLRKGLLKAAKTTGAWVFT----G 70 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~--l~~P~LVISV~G-G~-~~f~--------l~~~l~~~f~~GL~kaA~sTgaWIiT----g 70 (192)
|=-|++|.+|-++....++ +.+=+++..-.| |+ .|+. +...+.+.+|+ .+..+++...-+++ |
T Consensus 65 v~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~-~~E~cd~l~gf~i~~sl~G 143 (454)
T PLN00222 65 LLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDR-EADGSDSLEGFVLCHSIAG 143 (454)
T ss_pred eecCCCcchhhhhccCccccccCccceeecccCCCcccchHHhHHHHHHHHHHHHHHHHH-HHHhCCCccceEEeecCCC
Confidence 4468899999888765544 455557777764 55 3342 33455566676 66677777777776 6
Q ss_pred CcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 71 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 71 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
||-.|+.-.+-++++|.=.+ .-+.++.|.|-
T Consensus 144 GTGSGlgs~lle~L~d~y~~--~~~~~~~v~P~ 174 (454)
T PLN00222 144 GTGSGMGSYLLEALNDRYSK--KLVQTYSVFPN 174 (454)
T ss_pred CccchHHHHHHHHHHhhcCC--cceeeEEecCC
Confidence 78889999999999985321 12556777664
No 10
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=62.81 E-value=32 Score=31.53 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=54.2
Q ss_pred eeCCCCHHHHHHHHHhh--hCCCCCCeEEEEecCC-CCCC-----CcHHHHHHHHHHHHHHhh---hcCcEEEe----CC
Q psy11223 7 LSYDTRPENILQLFTRE--WSLELPKLLITVQGGK-ANFE-----LQPKLKKVLRKGLLKAAK---TTGAWVFT----GG 71 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~--W~l~~P~LVISV~GG~-~~f~-----l~~~l~~~f~~GL~kaA~---sTgaWIiT----gG 71 (192)
+--|++|..+-++.... |.+.+=+++..- .|+ .||. .-+.+.+.+..-|.|.++ +...-+++ ||
T Consensus 33 v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~-~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GG 111 (379)
T cd02190 33 VLIDMEEGVVNEILKGPLRDLFDETQLVTDV-SGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGG 111 (379)
T ss_pred eeccCChhHHHHHhcCccccccCcccccccC-CCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCC
Confidence 44689999999988643 445554444444 455 3433 223444333333444544 44444554 67
Q ss_pred cccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 72 TNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 72 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
|-+|+.-.+-++++|.-.+ .-+.++.|.|
T Consensus 112 TGSG~gs~l~e~l~~~y~~--~~~~~~~v~P 140 (379)
T cd02190 112 TGSGLGTYVLELLADEFPE--VYRFVTSVYP 140 (379)
T ss_pred cchhHHHHHHHHHHHhcCc--cceEEEeecC
Confidence 8889999999999985321 1245565555
No 11
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=58.25 E-value=44 Score=26.61 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccch
Q psy11223 10 DTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGV 76 (192)
Q Consensus 10 dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV 76 (192)
..+++.+++.+.+.... .--|+++||. -..+.+.++++. +|+. ....||.||++..-+
T Consensus 45 ~lt~eel~~~I~~~~~~---~~gVt~SGGE---l~~~~l~~ll~~--lk~~-Gl~i~l~Tg~~~~~~ 102 (147)
T TIGR02826 45 KLTPEYLTKTLDKYRSL---ISCVLFLGGE---WNREALLSLLKI--FKEK-GLKTCLYTGLEPKDI 102 (147)
T ss_pred CCCHHHHHHHHHHhCCC---CCEEEEechh---cCHHHHHHHHHH--HHHC-CCCEEEECCCCCHHH
Confidence 35678888888665422 2369999999 233556666665 2322 457899999877433
No 12
>PTZ00387 epsilon tubulin; Provisional
Probab=56.62 E-value=37 Score=32.16 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred eCCCCHHHHHHHHHhhhC--CCCCCeEEEEecCCCCCCCc-----HHHHHHHHHHHHHH---hhhcCcEEEe----CCcc
Q psy11223 8 SYDTRPENILQLFTREWS--LELPKLLITVQGGKANFELQ-----PKLKKVLRKGLLKA---AKTTGAWVFT----GGTN 73 (192)
Q Consensus 8 s~dt~p~~i~~l~~~~W~--l~~P~LVISV~GG~~~f~l~-----~~l~~~f~~GL~ka---A~sTgaWIiT----gG~~ 73 (192)
=-|++|..+-+++...++ +.+-+++....|-..||..- +...+.+..-+.|. +++...-+++ |||-
T Consensus 66 ~vD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTG 145 (465)
T PTZ00387 66 LVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTG 145 (465)
T ss_pred ccCCCccHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcc
Confidence 358899999999876543 55444444444433556532 34444433334444 4444444554 6788
Q ss_pred cchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 74 TGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 74 ~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
+|+.-.+-++++|.-. ..-+.++.|-|
T Consensus 146 SGlgs~lle~l~d~y~--~~~~~~~~V~P 172 (465)
T PTZ00387 146 SGLGTRILGMLEDEFP--HVFRFCPVVFP 172 (465)
T ss_pred hhHHHHHHHHHHHhcc--cCceeeeEecC
Confidence 9999999999998532 11233555555
No 13
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=54.75 E-value=31 Score=28.65 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=60.5
Q ss_pred eeCCCCHHHHHHHHHhhh-CCCCCCeEEEEe-cCCCCCCCcHH-----HHHHHHHHHHHHh---hhcCcEEEe----CCc
Q psy11223 7 LSYDTRPENILQLFTREW-SLELPKLLITVQ-GGKANFELQPK-----LKKVLRKGLLKAA---KTTGAWVFT----GGT 72 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W-~l~~P~LVISV~-GG~~~f~l~~~-----l~~~f~~GL~kaA---~sTgaWIiT----gG~ 72 (192)
+.-||+|.++-++....- .+-.|+-+++=. |-..|+..-.. ..+....-+-+.. .....-+++ |||
T Consensus 58 i~iDtd~~~l~~i~~~~~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGT 137 (216)
T PF00091_consen 58 IAIDTDPKVLDEIRASPKRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGT 137 (216)
T ss_dssp EEEESSHHHHHHHHTSEETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccceeccccccee
Confidence 557899999999775432 455677777766 44455664433 3333333344444 667666665 778
Q ss_pred ccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 73 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 73 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
=+|+.-.+.+.+++.- ....+.++.|-|.
T Consensus 138 GSG~~~~l~~~l~~~y--~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 138 GSGLGPVLAEMLREEY--PKKPIISFSILPF 166 (216)
T ss_dssp HHHHHHHHHHHHHHTS--TTSEEEEEEEE-C
T ss_pred ccccccccchhhhccc--cccceeecccccc
Confidence 8899999999998852 1224667888777
No 14
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=54.13 E-value=43 Score=31.13 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=58.5
Q ss_pred EeeCCCCHHHHHHHHHhhhC-CCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy11223 6 RLSYDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----G 70 (192)
Q Consensus 6 Rls~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~-~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----g 70 (192)
.+--|++|.++-++.....+ +=.|+-++.=..|+ .||. +...+.+.+|+ .+..+++...-+++ |
T Consensus 62 av~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~-~~E~cD~l~gf~~~~sl~G 140 (425)
T cd02187 62 AILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAESCDCLQGFQLTHSLGG 140 (425)
T ss_pred eeeccCChhhhhhhhcCcccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHH-hhccCCCcceEEEEeecCC
Confidence 35578899999887665443 33455555444444 3332 22344455555 45556666666665 5
Q ss_pred CcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 71 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 71 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
|+-+|+.-.+-++++|.=.+ .-+.+.+|.|-
T Consensus 141 GTGSG~gs~l~e~l~d~y~~--~~~~~~~V~P~ 171 (425)
T cd02187 141 GTGSGMGTLLISKIREEYPD--RIMATFSVFPS 171 (425)
T ss_pred CccccHHHHHHHHHHHhcCC--cceEEEEEecC
Confidence 77789999999999985321 22567777774
No 15
>PTZ00010 tubulin beta chain; Provisional
Probab=52.76 E-value=41 Score=31.58 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=59.3
Q ss_pred EeeCCCCHHHHHHHHHhhhC-CCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy11223 6 RLSYDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----G 70 (192)
Q Consensus 6 Rls~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~-~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----g 70 (192)
.+--|++|.++-++.....+ +=.|+-+++=..|+ .||. +.....+.+|+ .+..+++...-+|+ |
T Consensus 63 av~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk-~~E~cd~l~gf~i~~Sl~G 141 (445)
T PTZ00010 63 AVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAESCDCLQGFQITHSLGG 141 (445)
T ss_pred eeeccCChhhhhhhcccchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhh-hhhhccCccceEEEeccCC
Confidence 34568899998888665443 33444444444444 4443 22444555666 55666677777665 6
Q ss_pred CcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 71 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 71 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
||-.|+.-.+-+.++|.=.+ .-+.+.+|-|-
T Consensus 142 GTGSGlgs~l~e~L~dey~~--~~~~~~~v~P~ 172 (445)
T PTZ00010 142 GTGSGMGTLLISKLREEYPD--RIMMTFSVFPS 172 (445)
T ss_pred CccccHHHHHHHHHHhhCCc--cceeeeEecCC
Confidence 78899999999999985321 12556777664
No 16
>PTZ00335 tubulin alpha chain; Provisional
Probab=51.62 E-value=43 Score=31.54 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHhhhC-CCCCCeEEEEecCCCC-CC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy11223 9 YDTRPENILQLFTREWS-LELPKLLITVQGGKAN-FE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTN 73 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~~~-f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG~~ 73 (192)
-|++|..+-+++...++ |=.|+-+|+=..|+.| |. +...+.+.+|+ .+..+++...-+|+ |||=
T Consensus 68 iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~-~~E~cD~l~gf~i~~Sl~GGTG 146 (448)
T PTZ00335 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK-LADNCTGLQGFLVFHAVGGGTG 146 (448)
T ss_pred ccCCcchhhhcccCccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHH-hHHhccCccceeEeeccCCCcc
Confidence 47788999888876664 4456656555555544 43 22344455666 55666666666664 7888
Q ss_pred cchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 74 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 74 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
+|+.-.+-++++|.-.+ .-+.++.|.|-
T Consensus 147 SGlgs~l~e~l~d~yp~--~~~~~~~v~P~ 174 (448)
T PTZ00335 147 SGLGSLLLERLSVDYGK--KSKLGFTIYPS 174 (448)
T ss_pred chHHHHHHHHHHHhccc--cceeeEEecCC
Confidence 99999999999985321 12456667664
No 17
>PRK13660 hypothetical protein; Provisional
Probab=49.51 E-value=86 Score=26.17 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=44.7
Q ss_pred cCCCCCCC-------c--HHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 37 GGKANFEL-------Q--PKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 37 GG~~~f~l-------~--~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
-|.+.+++ + ..++..+++-|..+.+.==-|+|||| +.||=--.++++-+-...- ..+-++=|.|.
T Consensus 7 TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~gg-alG~d~wAaEvvl~LK~~y-p~lkL~~~~PF 80 (182)
T PRK13660 7 TGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISG-QLGVELWAAEVVLELKEEY-PDLKLAVITPF 80 (182)
T ss_pred eccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECC-cchHHHHHHHHHHHHHhhC-CCeEEEEEeCc
Confidence 34666666 2 45777888888888887667999999 8899888888886643221 23445555553
No 18
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=48.09 E-value=63 Score=29.40 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=59.1
Q ss_pred eeCCCCHHHHHHHHHhhhC-CCCCCeEEEEecCCCC-CC-----CcHHHHHHHHHHHHHHhhhcCc---EEEe----CCc
Q psy11223 7 LSYDTRPENILQLFTREWS-LELPKLLITVQGGKAN-FE-----LQPKLKKVLRKGLLKAAKTTGA---WVFT----GGT 72 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~-l~~P~LVISV~GG~~~-f~-----l~~~l~~~f~~GL~kaA~sTga---WIiT----gG~ 72 (192)
+-.|++|.++-.+.....+ +=.|+-+++-..|+.| +. .-+...+.+..-|-|.++..+. -+|+ ||+
T Consensus 23 i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGT 102 (382)
T cd06059 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGT 102 (382)
T ss_pred HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCc
Confidence 3468899998888866543 3356666666666654 32 2234444444445556565554 3544 578
Q ss_pred ccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 73 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 73 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
-+|+.-.+-|.++|.-. ..-+.+++|.|-
T Consensus 103 GSG~gs~l~e~l~d~y~--~~~i~~~~v~P~ 131 (382)
T cd06059 103 GSGLGSLLLELLSDEYP--KILINTFSIFPS 131 (382)
T ss_pred chhHHHHHHHHHHHhcC--ccceEeEEEecc
Confidence 88999999999998532 223556666664
No 19
>KOG0025|consensus
Probab=44.58 E-value=16 Score=33.38 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=32.0
Q ss_pred CcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccccceecccccc
Q psy11223 64 GAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIVENNHELI 113 (192)
Q Consensus 64 gaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~V~~r~~Li 113 (192)
|-|||-+|.|+||.|+|=|..| +.||-+-++|.+|+.+.
T Consensus 161 GD~vIQNganS~VG~~ViQlak-----------a~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 161 GDSVIQNGANSGVGQAVIQLAK-----------ALGIKTINVVRDRPNIE 199 (354)
T ss_pred CCeeeecCcccHHHHHHHHHHH-----------HhCcceEEEeecCccHH
Confidence 8899999999999888877664 36777788899988773
No 20
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=42.96 E-value=1.2e+02 Score=27.17 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=48.9
Q ss_pred cceEEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy11223 2 LQYVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTG 70 (192)
Q Consensus 2 a~yiRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTg 70 (192)
+.||...+-.+|.++.+.+.+....+-|.+|++..==...+...+.. .. =..|.|-.||.|.+=-
T Consensus 172 ~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~~~~~~~~~--~~--~~~k~Av~tg~wplye 236 (300)
T PRK11864 172 VPYVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPPGWRFDPDK--TI--EIARLAVETGVWPLFE 236 (300)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCcChHH--HH--HHHHHHHHcCCceEEE
Confidence 36887777789999999999999999999999987666555444332 21 2567888899997643
No 21
>PLN00221 tubulin alpha chain; Provisional
Probab=41.13 E-value=77 Score=29.85 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHhhh-CCCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy11223 9 YDTRPENILQLFTREW-SLELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTN 73 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W-~l~~P~LVISV~GG~-~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG~~ 73 (192)
-|++|..+-+++...+ .|=.|+-+|+=..|+ .||. +...+.+.+|+ ++..+++...-+|+ ||+-
T Consensus 68 iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~-~~E~cD~l~gf~i~~Sl~GGtG 146 (450)
T PLN00221 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK-LADNCTGLQGFLVFNAVGGGTG 146 (450)
T ss_pred CCCChhhhhhhccCccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHH-HHHhccCccceeEeeccCCCcc
Confidence 5789999988886543 244555555544555 4454 23455577777 67777777776664 7888
Q ss_pred cchhhHHHHHhhhh
Q psy11223 74 TGVTRQVGDALLME 87 (192)
Q Consensus 74 ~GV~k~VG~Av~d~ 87 (192)
.|+.-.+=+.++|.
T Consensus 147 SGlgs~~le~l~d~ 160 (450)
T PLN00221 147 SGLGSLLLERLSVD 160 (450)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999985
No 22
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=40.95 E-value=1.5e+02 Score=26.14 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=54.3
Q ss_pred eeCCCCHHHHHHHHHhhhCC-CCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy11223 7 LSYDTRPENILQLFTREWSL-ELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 71 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~l-~~P~LVISV~GG~-~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG 71 (192)
+.-||+|+++-++....... =.|.-.++=-.|+ .|+. ....+.+.+|+ .+..+.++..-+|+ ||
T Consensus 23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~-~~E~cD~~~gf~i~~slgGG 101 (328)
T cd00286 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRK-EAEECDSLQGFFITHSLGGG 101 (328)
T ss_pred heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHH-HHHhCCCccceEEEeecCCC
Confidence 56799999988887654321 1233333322233 3332 22333444544 44555556555554 67
Q ss_pred cccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 72 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 72 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
+-+|+.-.+-+.++|.-.+ .-+.++.|-|-
T Consensus 102 TGsG~~~~i~e~l~d~y~~--~~~~~~~v~P~ 131 (328)
T cd00286 102 TGSGLGPVLAERLKDEYPK--RLKITFSILPG 131 (328)
T ss_pred ccccHHHHHHHHHHHHcCc--cceeEEEecCC
Confidence 8889999999999985321 23556666665
No 23
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=39.75 E-value=65 Score=29.26 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc
Q psy11223 12 RPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT 74 (192)
Q Consensus 12 ~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~ 74 (192)
.++.-++.|.+-..++.|-+|+| ++|..++. |.+||+..+.||+++=..+
T Consensus 66 ~~~~r~~~i~~~~~~~~P~iI~s-----k~~~~p~~--------l~~~a~~~~~pil~s~~~t 115 (308)
T COG1493 66 SSEERKKRIGKLFSLDTPALIVS-----KGLPIPEE--------LLDAAKKYNIPILTSKLST 115 (308)
T ss_pred ChhhHHHHHHHHhCcCCCEEEEE-----CCCCCCHH--------HHHHHHHcCCceEEecchH
Confidence 56677788888899999999997 78887654 7889999999999987665
No 24
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=39.69 E-value=95 Score=27.73 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcC-cEEEeCCcccchhhHHHHHhhhh
Q psy11223 26 LELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTG-AWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 26 l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTg-aWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
++.|...|-|=|-.++|.+.+..-+.+-+-|.+.++..+ .|.||.--.++ ..+-+++++.
T Consensus 144 l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp--~~~~~~L~~~ 204 (311)
T PF06258_consen 144 LPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTP--PEAEAALREL 204 (311)
T ss_pred CCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCc--HHHHHHHHHh
Confidence 556665555544457899887655555555888888887 89999988885 3556666654
No 25
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=38.68 E-value=1.1e+02 Score=24.25 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHHHhh----hcCcEEEeCCccc
Q psy11223 30 KLLITVQGGKANFELQPKLKKVLRKGLLKAAK----TTGAWVFTGGTNT 74 (192)
Q Consensus 30 ~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~----sTgaWIiTgG~~~ 74 (192)
.--|+++||.- +. ++.+ +.+.+ |+++++ ....|+.||=+-.
T Consensus 66 ~~gvt~sGGEP-l~-~~~~-~~l~~-l~~~~k~~~~~~~i~~~tGy~~e 110 (154)
T PRK11121 66 RQGLSLSGGDP-LH-PQNV-PDILK-LVQRVKAECPGKDIWVWTGYKLD 110 (154)
T ss_pred CCcEEEECCCc-cc-hhhH-HHHHH-HHHHHHHHCCCCCEEEecCCCHH
Confidence 34578899965 32 2221 22233 333332 3588987665533
No 26
>KOG2170|consensus
Probab=38.06 E-value=33 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhCCCCCC--eEEEEecCCC
Q psy11223 14 ENILQLFTREWSLELPK--LLITVQGGKA 40 (192)
Q Consensus 14 ~~i~~l~~~~W~l~~P~--LVISV~GG~~ 40 (192)
+.|...|..+|.=+.|+ ||+|.+|++.
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tG 120 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTG 120 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCC
Confidence 46778889999987665 9999999884
No 27
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=37.53 E-value=79 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRK 54 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~ 54 (192)
++..++++-+++.. .|.+||-=+|-...|.+++.+.+.|++
T Consensus 44 ~~l~~~~l~~ll~~-----~peivliGTG~~~~~~~~~~~~~~l~~ 84 (117)
T cd05126 44 HGLQPEELEELLEE-----GVEVIVIGTGQSGALKVPPETVEKLEK 84 (117)
T ss_pred ccCCHHHHHHHHhc-----CCCEEEEcCCCCccccCCHHHHHHHHh
Confidence 46788888888853 488777666666678889998776654
No 28
>PF03584 Herpes_ICP4_N: Herpesvirus ICP4-like protein N-terminal region; InterPro: IPR005206 The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerisation [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus
Probab=37.02 E-value=37 Score=28.33 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHH--HHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 12 RPENILQLFTREWSLELPKLLITVQGGKANFELQPKL--KKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 12 ~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l--~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
||..-|+.|.+..-. |..= +.+..+|-.|++.- .+-|++-+.....+.|. .|||-.+..| -|||+||++.
T Consensus 58 d~~kQy~aLv~~~~~--~~~~--~m~wlq~~Kls~~d~~L~~~cqk~~~~~~~~gs-~iTGsVa~~v-PHig~AMa~g 129 (173)
T PF03584_consen 58 DPAKQYEALVRLIYT--PDRD--AMAWLQNPKLSPADQALNQFCQKFRGGGRSSGS-AITGSVARPV-PHIGDAMAAG 129 (173)
T ss_pred CHHHHHHHHHHHHhc--ccHH--HHHHhcCCCcCchHHHHHHHHHHhccCCCCCCc-eecccccCCC-CcHHHHHhcc
Confidence 666777777665433 2211 13445555555432 24455446666666677 6899999888 9999999874
No 29
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=35.57 E-value=32 Score=29.78 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=32.8
Q ss_pred CCCcccccCCCcE------------------EEEeeCCCCC-CCChhHHH------HHHHHHHHhccc
Q psy11223 128 RSKFAVLNNRHAY------------------FLLVDNGTAG-KYGAEIIL------RRKLEKYISNQK 170 (192)
Q Consensus 128 ~~~~~~Ld~nHsh------------------FlLVD~Gt~~-~~G~e~~l------R~~LE~~is~~~ 170 (192)
..-+.+||.+||| ++.|.|+.++ .+|.+.++ +...|.|+.+..
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC
Confidence 3446789999997 7788888764 57888877 678999997643
No 30
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.38 E-value=39 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhCCCCC--CeEEEEecCCC
Q psy11223 14 ENILQLFTREWSLELP--KLLITVQGGKA 40 (192)
Q Consensus 14 ~~i~~l~~~~W~l~~P--~LVISV~GG~~ 40 (192)
+.++..+..+|.=+.| -||+|.+|...
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tG 63 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTG 63 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCC
Confidence 4677778888865332 29999999664
No 31
>PLN02235 ATP citrate (pro-S)-lyase
Probab=31.95 E-value=1.4e+02 Score=28.21 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=48.7
Q ss_pred cceEEeeCCCCHHHHHHHHHhhh----CCCCCC-eEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcC---------cEE
Q psy11223 2 LQYVRLSYDTRPENILQLFTREW----SLELPK-LLITVQGGKANFELQPKLKKVLRKGLLKAAKTTG---------AWV 67 (192)
Q Consensus 2 a~yiRls~dt~p~~i~~l~~~~W----~l~~P~-LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTg---------aWI 67 (192)
|.|+=++-..+.+.+++.+.--- .=+.++ .+|=+.||..+++ .+-.+| +|+++|++..+ -||
T Consensus 299 ANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd---~VA~tf-~GIi~A~~e~~~kl~~~~vpivV 374 (423)
T PLN02235 299 GNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFT---DVAATF-NGIIRALREKESKLKAARMHIFV 374 (423)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccch---hhhhhh-hHHHHHHHHhhhccccCCccEEE
Confidence 67999999999998887653332 113344 3488889999887 444556 89999998654 344
Q ss_pred EeCCcccc
Q psy11223 68 FTGGTNTG 75 (192)
Q Consensus 68 iTgG~~~G 75 (192)
==+|+|.-
T Consensus 375 Rl~GtN~e 382 (423)
T PLN02235 375 RRGGPNYQ 382 (423)
T ss_pred ECCCCCHH
Confidence 45777763
No 32
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=31.33 E-value=23 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHhccccCCCCceeeecCCCC
Q psy11223 154 AEIILRRKLEKYISNQKLHPGKSKIVGAKGGE 185 (192)
Q Consensus 154 ~e~~lR~~LE~~is~~~~~~~~~~~v~~~~~~ 185 (192)
-+-.-|.+++++|+..+......-|||.-||-
T Consensus 28 L~~~~r~~~d~~i~~y~~~~~lVDGvPaQGG~ 59 (85)
T PF07240_consen 28 LTPQDRQRIDRFIRRYKEENNLVDGVPAQGGF 59 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccCcCCCCCc
Confidence 34567889999998877655577799998885
No 33
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=31.05 E-value=36 Score=28.69 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=31.1
Q ss_pred eCCCCHHHHHHHHHhhhCC-------CCCCeEEEEecCCCCCCCcHHH
Q psy11223 8 SYDTRPENILQLFTREWSL-------ELPKLLITVQGGKANFELQPKL 48 (192)
Q Consensus 8 s~dt~p~~i~~l~~~~W~l-------~~P~LVISV~GG~~~f~l~~~l 48 (192)
+.|...+.+|..+.+.|.- ...-.+||+.||..++.+++.+
T Consensus 129 ~~d~~~~~~y~~~~~~~~~~~~~~~~~~~v~~vSi~gG~~D~~v~~~~ 176 (225)
T PF07819_consen 129 AFDRSLDRFYKRLNNFWRKNYSPADSLRDVTVVSIAGGIRDTLVPSDL 176 (225)
T ss_pred cchHHHHHHHHHHHHHHHHhcccccccCCceEEEecCCcccccccccc
Confidence 3455567788889899986 2355689999999998877664
No 34
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=30.51 E-value=88 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=34.1
Q ss_pred eEEEEecCCCCCC--CcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhh
Q psy11223 31 LLITVQGGKANFE--LQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALL 85 (192)
Q Consensus 31 LVISV~GG~~~f~--l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~ 85 (192)
..|.||||+.+.. +++..++..+++|.+|++.--+.+-.||.- .--|=.|++
T Consensus 4 ~~i~vHGGAG~~~~~~~~~~~~~~~~~l~~al~~g~~~L~~g~sa---ldAV~~av~ 57 (318)
T PLN02689 4 WAIALHGGAGDIDPNLPRERQEEAEAALRRCLDLGIAALRSSLPA---LDVVELVVR 57 (318)
T ss_pred eEEEEEcCCCCCccccCHhHHHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHH
Confidence 4789999998754 667788888898888887544444444433 234444444
No 35
>PHA00026 cp coat protein
Probab=29.70 E-value=42 Score=26.01 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=21.9
Q ss_pred CCcEEEEeeCCCCCCCC-hhHHHHHHHHHHHhcc
Q psy11223 137 RHAYFLLVDNGTAGKYG-AEIILRRKLEKYISNQ 169 (192)
Q Consensus 137 nHshFlLVD~Gt~~~~G-~e~~lR~~LE~~is~~ 169 (192)
|...|+|||+|-.|.-- ....|-.-..+.||+.
T Consensus 3 nf~~fvlvdnggtgdvtvapsnfangvaewis~n 36 (129)
T PHA00026 3 NFRQFVLVDNGGTGDVTVAPSNFANGVAEWISNN 36 (129)
T ss_pred cceEEEEEecCCccceEEeccccchhHHHHHhcC
Confidence 56789999999876532 3444555566677663
No 36
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=29.70 E-value=96 Score=29.64 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=18.5
Q ss_pred cCCCcEEEEeeCCCCCCCChhHHHHHHH
Q psy11223 135 NNRHAYFLLVDNGTAGKYGAEIILRRKL 162 (192)
Q Consensus 135 d~nHshFlLVD~Gt~~~~G~e~~lR~~L 162 (192)
-|.+.|++|||||-..-.+.| .||..|
T Consensus 282 Gp~efHlVlvDNGRs~~~~~~-~~re~L 308 (459)
T COG1139 282 GPKEFHLVLVDNGRSEALADE-EFREAL 308 (459)
T ss_pred CCceEEEEEEeCCchhhccCh-HHHHHH
Confidence 388999999999875444443 455544
No 37
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=28.63 E-value=3.3e+02 Score=24.46 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=44.1
Q ss_pred ceEEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEe
Q psy11223 3 QYVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFT 69 (192)
Q Consensus 3 ~yiRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiT 69 (192)
.|+...+-.+|+++.+.|.+....+-|.+|+...==...+...+... .. ..|.|-.||.|-+=
T Consensus 177 ~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~~~~~~~~~~--~~--~~klAvetg~~ply 239 (299)
T PRK11865 177 PYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQPCPTGWGFPPEKT--IE--IGRLAVETGYWPLF 239 (299)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCCCHHHH--HH--HHHHHHhcCceeEE
Confidence 58866555699999999999999999999998764444443333321 11 35677778999763
No 38
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=28.61 E-value=1.9e+02 Score=25.88 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 43 ELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 43 ~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
.|.+.....+.+-+.++.+.....|||-|||+ |-+.+-++.-
T Consensus 59 ~~t~~~w~~l~~~I~~~~~~~dGiVVtHGTDT--meeTA~~L~~ 100 (323)
T cd00411 59 DMTDEDWLKIAKDINELYDSYDGFVITHGTDT--MEETAYFLSL 100 (323)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEcCccc--HHHHHHHHHH
Confidence 35554444455545555556899999999999 9999999863
No 39
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=28.53 E-value=1.8e+02 Score=23.95 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 47 KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 47 ~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
.+++.+++-|.++.+.=-.|+|||| ..|+=...++++.+-...- ..+-++-+.|.
T Consensus 26 ~ik~~L~~~i~~lie~G~~~fi~Gg-alG~D~waae~vl~LK~~y-p~ikL~~v~Pf 80 (177)
T PF06908_consen 26 VIKKALKKQIIELIEEGVRWFITGG-ALGVDLWAAEVVLELKKEY-PEIKLALVLPF 80 (177)
T ss_dssp HHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECC-cccHHHHHHHHHHHHHhhh-hheEEEEEEcc
Confidence 4667778877778887678999999 7799888999987653221 24556666664
No 40
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.06 E-value=76 Score=25.29 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=23.4
Q ss_pred CcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeec
Q psy11223 64 GAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIA 101 (192)
Q Consensus 64 gaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIA 101 (192)
|..+||||+ -|+...+.+.+..+. ..+++++|=.
T Consensus 1 gtylitGG~-gglg~~la~~La~~~---~~~~il~~r~ 34 (181)
T PF08659_consen 1 GTYLITGGL-GGLGQSLARWLAERG---ARRLILLGRS 34 (181)
T ss_dssp SEEEEETTT-SHHHHHHHHHHHHTT----SEEEEEESS
T ss_pred CEEEEECCc-cHHHHHHHHHHHHcC---CCEEEEeccC
Confidence 567889987 478888888886653 2356666655
No 41
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=27.13 E-value=59 Score=24.27 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHH
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLR 53 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~ 53 (192)
.+.+++.++. ++| +.++++.++++|....-++.+.+++.|.
T Consensus 2 it~e~l~~f~-~~~-y~p~n~~l~i~Gd~~~~~~~~~i~~~~~ 42 (184)
T PF05193_consen 2 ITLEDLRAFY-KKF-YRPSNMTLVIVGDIDPDELEKLIEKYFG 42 (184)
T ss_dssp --HHHHHHHH-HHH-SSGGGEEEEEEESSGHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHh-cCccceEEEEEcCccHHHHHHHHHhhhh
Confidence 4567777776 455 4667999999998775444444444443
No 42
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=27.07 E-value=1.3e+02 Score=28.40 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc-chh
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT-GVT 77 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~-GV~ 77 (192)
.|++.+-+++.++ .|++||+ |..+|.+.-.+. + |.+.|+..|||++-++.|. |++
T Consensus 170 iD~d~Le~~l~~~----~pklIv~---~~S~~s~~~D~a----~-i~~ia~~~ga~LlvD~AH~~Gli 225 (475)
T PLN03226 170 IDYDKLEKKAMLF----RPKLIIA---GASAYPRDWDYA----R-MRKIADKVGALLMCDMAHISGLV 225 (475)
T ss_pred cCHHHHHHHHhhc----CCeEEEE---ecCcCCCccCHH----H-HHHHHHHcCCEEEEEchhhhCcc
Confidence 3888888887654 6887755 345666554443 2 5568899999999888775 553
No 43
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=26.90 E-value=54 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.3
Q ss_pred EeeCCCCHHHHHHHHHhhhCCCCC
Q psy11223 6 RLSYDTRPENILQLFTREWSLELP 29 (192)
Q Consensus 6 Rls~dt~p~~i~~l~~~~W~l~~P 29 (192)
+++.|.+.+.++.+|.+||+|..+
T Consensus 81 ~~a~DrPS~Kll~Fl~Khy~L~~~ 104 (120)
T PF05301_consen 81 QLAIDRPSPKLLSFLKKHYGLQRY 104 (120)
T ss_pred cceecCCcHHHHHHHHHhcCCCcC
Confidence 567899999999999999999765
No 44
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=26.63 E-value=1.5e+02 Score=23.44 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=39.2
Q ss_pred ceEEeeCCCCHHHHHHHHHhh---hCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhc
Q psy11223 3 QYVRLSYDTRPENILQLFTRE---WSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTT 63 (192)
Q Consensus 3 ~yiRls~dt~p~~i~~l~~~~---W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sT 63 (192)
+|+-++-+.|++.+.+++.+- ..-..+.-- |..-..+.+.+.+.+.| |++..++.
T Consensus 71 P~l~l~l~ld~~~l~el~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~da~~R-Ll~ll~~p 128 (155)
T PF06719_consen 71 PYLALSLELDPALLAELVLELPPQPPPPPPASQ-----GIFVAPADEELLDALLR-LLRLLDDP 128 (155)
T ss_pred CEEEEEEEcCHHHHHHHHHhcccccCCCCCCCC-----ccccccCCHHHHHHHHH-HHHHHCCc
Confidence 699999999999999998552 111111100 55556678999999999 88888754
No 45
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=25.92 E-value=71 Score=27.09 Aligned_cols=43 Identities=30% Similarity=0.560 Sum_probs=28.6
Q ss_pred HHHHH--HHHHhhh----cCcEEEeC-Cc----ccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 51 VLRKG--LLKAAKT----TGAWVFTG-GT----NTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 51 ~f~~G--L~kaA~s----TgaWIiTg-G~----~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
.||+. |.++.+. .+.++|+| |. ..|+.-|+|.++ .+++||+|=
T Consensus 76 afRE~p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l---------~~PtIGVAK 129 (208)
T cd06559 76 AFREGPPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLL---------DLPTIGVAK 129 (208)
T ss_pred HHhhHHHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeec---------CCCEEEEEc
Confidence 34554 4444443 58899988 22 248888888887 368999973
No 46
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=25.06 E-value=1.3e+02 Score=23.49 Aligned_cols=34 Identities=9% Similarity=0.257 Sum_probs=27.1
Q ss_pred ceEEeeCCCCHHHHHHHHHhhhCC-----CCCCeEEEEe
Q psy11223 3 QYVRLSYDTRPENILQLFTREWSL-----ELPKLLITVQ 36 (192)
Q Consensus 3 ~yiRls~dt~p~~i~~l~~~~W~l-----~~P~LVISV~ 36 (192)
|=||+|+++.-..+.++|+++.+. ..|+..|=.+
T Consensus 38 K~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYev 76 (112)
T cd01782 38 KCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEV 76 (112)
T ss_pred EEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEE
Confidence 679999999999999999999983 4677655433
No 47
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=24.81 E-value=2.9e+02 Score=24.53 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=46.6
Q ss_pred hhhCCCCCCeEEEEecCCCCCCCcH---HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 22 REWSLELPKLLITVQGGKANFELQP---KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 22 ~~W~l~~P~LVISV~GG~~~f~l~~---~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
+.|. +.|.+.|.|-=|.+...+.. .+-+.|.++|-.+==+++.=+|-..-.+.++-+||+++..
T Consensus 104 ~~~~-~~~Dv~iViaDGLSa~Av~~na~~~l~al~~~L~~~g~~iap~v~~~qgRValgD~Ige~L~a 170 (260)
T PRK05465 104 AQCG-KNPDVQIVVADGLSALAVEANAEPLLPALLAGLKAAGWSVGPPVFVRQGRVALGDEIGELLGA 170 (260)
T ss_pred HhcC-CCCcEEEEEcCCCCHHHHHHhHHHHHHHHHHHHHHcCCCcCCeEEEecCeehHHHHHHHHhCC
Confidence 3344 68999999999998776653 4456677767333246666677777789999999999954
No 48
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.71 E-value=4.5e+02 Score=22.55 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhh--cCc-EEEeCCcccchhhHHH
Q psy11223 5 VRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKT--TGA-WVFTGGTNTGVTRQVG 81 (192)
Q Consensus 5 iRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~s--Tga-WIiTgG~~~GV~k~VG 81 (192)
|-+..+|+.+.+..++..- --=||.||--|.......+...+.+++ |-+.... ... --++||.|..-++.+-
T Consensus 113 lalnP~T~~~~l~~~l~~v----D~VLvMsV~PGf~GQ~fi~~~l~KI~~-lr~~~~~~~~~~~IeVDGGI~~~~i~~~~ 187 (229)
T PRK09722 113 LVLNPETPVESIKYYIHLL----DKITVMTVDPGFAGQPFIPEMLDKIAE-LKALRERNGLEYLIEVDGSCNQKTYEKLM 187 (229)
T ss_pred EEeCCCCCHHHHHHHHHhc----CEEEEEEEcCCCcchhccHHHHHHHHH-HHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 4567788888888877543 445788888777654444433333332 2222111 122 2378988876555554
Q ss_pred HH
Q psy11223 82 DA 83 (192)
Q Consensus 82 ~A 83 (192)
+|
T Consensus 188 ~a 189 (229)
T PRK09722 188 EA 189 (229)
T ss_pred Hc
Confidence 44
No 49
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.49 E-value=2e+02 Score=21.59 Aligned_cols=41 Identities=29% Similarity=0.493 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRK 54 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~ 54 (192)
.+.+++++..++... .|.+||-=+|.... .+++.+++.|++
T Consensus 37 ~~l~~~~l~~~~~~~----~peiliiGTG~~~~-~~~~~~~~~l~~ 77 (109)
T cd00248 37 SDLDPEALLPLLAED----RPDILLIGTGAEIA-FLPRALRAALRA 77 (109)
T ss_pred ccCCHHHHHHHHhhC----CCCEEEEcCCCCCC-cCCHHHHHHHHH
Confidence 467888888877653 58888777777764 467888777766
No 50
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=24.18 E-value=5.2e+02 Score=23.39 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=53.3
Q ss_pred EeeCCCCHHHHHHHHHhhhCCCCCCeEEEEe-----cCC-CCCCCcHHHHHHHHHHHHHHhhh-----cCcEEEe----C
Q psy11223 6 RLSYDTRPENILQLFTREWSLELPKLLITVQ-----GGK-ANFELQPKLKKVLRKGLLKAAKT-----TGAWVFT----G 70 (192)
Q Consensus 6 Rls~dt~p~~i~~l~~~~W~l~~P~LVISV~-----GG~-~~f~l~~~l~~~f~~GL~kaA~s-----TgaWIiT----g 70 (192)
.+.-|||+.++-.+-. ++.|+-++.=- -|+ .++++-..+.+.-..-+.++.+. +..-+|| |
T Consensus 34 ~iavntD~~~L~~l~~----~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGG 109 (349)
T cd02202 34 ALAINTAKNDLKGLKH----IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGG 109 (349)
T ss_pred EEEEECCHHHHHhhhc----CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCC
Confidence 3567899988776642 44666554421 122 34444444443333336666665 5555554 5
Q ss_pred CcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 71 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 71 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
||-+|..-.+.+++++.-. .-+.++.+-|.
T Consensus 110 GTGsG~~p~iae~lke~~~---~~~~~iv~~P~ 139 (349)
T cd02202 110 GTGSGGAPVLAKELKERYE---EPVYALGVLPA 139 (349)
T ss_pred CccccHHHHHHHHHHHhCC---ccEEEEEEecC
Confidence 8889999999999988532 12455666554
No 51
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.86 E-value=2.1e+02 Score=21.53 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRK 54 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~ 54 (192)
.+.+++++-.++.. .|.++|-=+|-...|. ++.+++.|++
T Consensus 38 ~~l~~e~l~~l~~~-----~peiliiGTG~~~~~~-~~~~~~~l~~ 77 (109)
T cd05560 38 EDLTAAHFEALLAL-----QPEVILLGTGERQRFP-PPALLAPLLA 77 (109)
T ss_pred ccCCHHHHHHHHhc-----CCCEEEEecCCCCCcC-CHHHHHHHHH
Confidence 35678888777653 4887777777766666 7887766665
No 52
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.77 E-value=4.5e+02 Score=22.19 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=36.0
Q ss_pred EEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhh--cCcEE-EeCCcccc
Q psy11223 5 VRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKT--TGAWV-FTGGTNTG 75 (192)
Q Consensus 5 iRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~s--TgaWI-iTgG~~~G 75 (192)
+-+..+|+.+.+..++..- .==|+.||--|......-+...+.+++ +-+..+. .+..| +.||.+.-
T Consensus 111 lalnP~Tp~~~i~~~l~~~----D~vlvMtV~PGfgGq~fi~~~lekI~~-l~~~~~~~~~~~~I~vdGGI~~e 179 (220)
T PRK08883 111 VVLNPATPLHHLEYIMDKV----DLILLMSVNPGFGGQSFIPHTLDKLRA-VRKMIDESGRDIRLEIDGGVKVD 179 (220)
T ss_pred EEeCCCCCHHHHHHHHHhC----CeEEEEEecCCCCCceecHhHHHHHHH-HHHHHHhcCCCeeEEEECCCCHH
Confidence 4466778888777776432 334677887777654333322223333 2222222 23555 79988853
No 53
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=23.59 E-value=2.2e+02 Score=25.25 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 29 PKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 29 P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
+++.+.-...-....|.+.....+.+-+.++.+.....|||.||++ |-+.+-++.-.
T Consensus 39 ~~~~~~~~~~~dS~~~t~~~~~~la~~i~~~~~~~~GvVVtHGTDT--me~tA~~Ls~~ 95 (313)
T PF00710_consen 39 ADIEVEQFMNIDSSDMTPEDWLELARAIQAALDDYDGVVVTHGTDT--MEETAFFLSLL 95 (313)
T ss_dssp SEEEEEEEEEE-GGG--HHHHHHHHHHHHHHHTTCSEEEEE--STT--HHHHHHHHHHH
T ss_pred CeEEEccccccCchhcCHHHHHHHHHHHHHHHHhcCeEEEecCchH--HHHHHHHHHHH
Confidence 4554443333334446666566666656666666899999999999 99999888643
No 54
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=22.13 E-value=3.7e+02 Score=23.81 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcC-------cEEEeCCcccchhhHHHHH
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTG-------AWVFTGGTNTGVTRQVGDA 83 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTg-------aWIiTgG~~~GV~k~VG~A 83 (192)
.+.+.+..++..........+-|.++||+--......+.+ +++.|+..| .=|.|+|+.. .+.+.+.
T Consensus 39 m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~TNG~ll--~~~~~~~ 111 (370)
T PRK13758 39 MRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEE-----LMELQRKHNYKNLKIYNSLQTNGTLI--DESWAKF 111 (370)
T ss_pred CCHHHHHHHHHHHHhccCCceEEEEECCccccCChHHHHH-----HHHHHHHhccCCCeEEEEEEecCEec--CHHHHHH
Confidence 3455565665444444445678899998654332223333 333333333 2488999653 3444444
Q ss_pred hhh
Q psy11223 84 LLM 86 (192)
Q Consensus 84 v~d 86 (192)
+++
T Consensus 112 l~~ 114 (370)
T PRK13758 112 LSE 114 (370)
T ss_pred HHH
Confidence 443
No 55
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=21.85 E-value=75 Score=28.15 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGT 72 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~ 72 (192)
.|-||||+.+. ++..++..+++|-+|++..-+++-.||.
T Consensus 3 ~i~vHgGAG~~--~~~~~~~~~~~~~~a~~~~~~~L~~g~s 41 (261)
T cd04702 3 VIIVHGGAGTI--PDERVAEKIAGVKAAAEAGYKVLEQGGS 41 (261)
T ss_pred EEEEEcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 58899999875 5566777888888888765555555543
No 56
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=21.56 E-value=2.8e+02 Score=23.90 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccch
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGV 76 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV 76 (192)
.+++.+.+.+.+. +.+|+.+++-...=.+.+ + .+ |.+.|+..|+|++-++.+.|.
T Consensus 139 ~d~~~l~~~i~~~-----~~~vi~~~~~~~tG~~~~-l----~~-I~~l~~~~g~~livD~a~~~~ 193 (371)
T PRK13520 139 VDVKAVEDLIDDN-----TIGIVGIAGTTELGQVDP-I----PE-LSKIALENGIFLHVDAAFGGF 193 (371)
T ss_pred CCHHHHHHHHhhC-----CEEEEEEcCCcCCcccCC-H----HH-HHHHHHHcCCCEEEEecchhH
Confidence 4788888887543 556665554211111222 2 33 566777789999988887653
No 57
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=21.40 E-value=57 Score=26.54 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHh----hhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeec
Q psy11223 48 LKKVLRKGLLKAA----KTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIA 101 (192)
Q Consensus 48 l~~~f~~GL~kaA----~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIA 101 (192)
+++++.|=+-+.. .-.+-|+|+||... .+.+=+|+++..- +++.||+|
T Consensus 61 M~Evl~RR~~~~~~~~~~lPDLilIDGG~gQ--l~aa~~~l~~lgl----~i~vigla 112 (155)
T PF08459_consen 61 MREVLTRRFKRLKEEKEPLPDLILIDGGKGQ--LNAAKEVLKELGL----NIPVIGLA 112 (155)
T ss_dssp HHHHHHHHHCCCHHHT----SEEEESSSHHH--HHHHHHHHHCTT--------EEEEE
T ss_pred HHHHHHHHHhcccccCCCCCCEEEEcCCHHH--HHHHHHHHHHcCC----CeEEEEEE
Confidence 4444444333333 34599999998754 5666666655432 26666665
No 58
>PRK10226 isoaspartyl peptidase; Provisional
Probab=21.22 E-value=1.6e+02 Score=26.70 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=27.2
Q ss_pred EEEEecCCCCCC---CcHHHHHHHHHHHHHHhhhcCcEEEeCC
Q psy11223 32 LITVQGGKANFE---LQPKLKKVLRKGLLKAAKTTGAWVFTGG 71 (192)
Q Consensus 32 VISV~GG~~~f~---l~~~l~~~f~~GL~kaA~sTgaWIiTgG 71 (192)
.|.||||+.... +++..++..+++|.+|.+.--+.+-.||
T Consensus 5 ~i~vHGGAG~~~~~~~~~~~~~~~~~~l~~al~~g~~~L~~g~ 47 (313)
T PRK10226 5 VIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGE 47 (313)
T ss_pred EEEEECCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999998753 5566777788888777665433333344
No 59
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.64 E-value=1.1e+02 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.8
Q ss_pred cEEEeCCcccchhhHHHHHhhhh
Q psy11223 65 AWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 65 aWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
.++||||. .||.+.+.+++-++
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~ 23 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARR 23 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT
T ss_pred EEEEECCC-CHHHHHHHHHHHhc
Confidence 47889887 58888888877654
No 60
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=20.61 E-value=1.5e+02 Score=17.15 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=28.3
Q ss_pred EEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCC
Q psy11223 5 VRLSYDTRPENILQLFTREWSLELPKLLITVQGGKAN 41 (192)
Q Consensus 5 iRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~ 41 (192)
++++.+..-+.+++.+.+.++.......|.+.|+...
T Consensus 12 ~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~ 48 (69)
T cd00196 12 LLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP 48 (69)
T ss_pred EEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC
Confidence 4555678888899999999998787788877765543
No 61
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=20.25 E-value=1.2e+02 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCCcEEEEeeCCCCCCCCh---------hHHHHHHHHHHH
Q psy11223 136 NRHAYFLLVDNGTAGKYGA---------EIILRRKLEKYI 166 (192)
Q Consensus 136 ~nHshFlLVD~Gt~~~~G~---------e~~lR~~LE~~i 166 (192)
-.|+||++|+ |..+.|+. .-.|+++|++.+
T Consensus 107 ~~~s~fVFVP-GpnDPw~s~~~LPR~PIp~~f~~~~~~~~ 145 (291)
T PTZ00235 107 LEHCYLIFIP-GINDPCACKNSIPKMPILPYYIRKFKQNI 145 (291)
T ss_pred HhcCeEEEEC-CCCCCCcCcccCCCCCchHHHHHHHHHhh
Confidence 3799999997 77777763 223677777655
Done!