Query psy11223
Match_columns 192
No_of_seqs 111 out of 199
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:19:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbx_A Putative uncharacterize 95.9 0.027 9.3E-07 45.9 7.8 68 27-103 10-77 (189)
2 3qua_A Putative uncharacterize 95.6 0.043 1.5E-06 45.1 8.0 68 28-104 20-87 (199)
3 2iz6_A Molybdenum cofactor car 95.1 0.35 1.2E-05 38.7 11.6 72 25-104 8-79 (176)
4 1ydh_A AT5G11950; structural g 94.1 0.16 5.5E-06 42.0 7.6 63 32-102 11-73 (216)
5 2a33_A Hypothetical protein; s 92.3 0.62 2.1E-05 38.3 8.5 67 30-104 13-79 (215)
6 1t35_A Hypothetical protein YV 92.3 0.43 1.5E-05 38.5 7.4 65 32-104 3-67 (191)
7 1weh_A Conserved hypothetical 90.8 0.79 2.7E-05 36.2 7.3 62 32-102 3-64 (171)
8 1rcu_A Conserved hypothetical 88.8 1.1 3.9E-05 36.3 6.9 64 32-103 25-90 (195)
9 1wek_A Hypothetical protein TT 86.7 2.2 7.6E-05 35.0 7.6 54 31-87 38-91 (217)
10 3bq9_A Predicted rossmann fold 85.0 6.9 0.00023 35.9 10.5 64 32-102 147-213 (460)
11 3gh1_A Predicted nucleotide-bi 66.9 42 0.0014 30.8 10.2 82 14-102 129-215 (462)
12 2ab1_A Hypothetical protein; H 58.7 25 0.00086 26.1 6.2 58 9-87 47-104 (122)
13 1k2x_A Putative L-asparaginase 50.1 14 0.00049 29.5 3.7 31 32-62 4-37 (177)
14 2gez_A L-asparaginase alpha su 48.9 14 0.00049 30.0 3.6 32 31-62 7-40 (195)
15 2nx2_A Hypothetical protein YP 38.8 95 0.0033 24.3 7.0 54 46-102 26-80 (181)
16 3f9t_A TDC, L-tyrosine decarbo 35.6 1.2E+02 0.004 24.5 7.3 56 11-76 158-213 (397)
17 1y8x_B Ubiquitin-activating en 33.8 51 0.0017 23.7 4.2 63 2-64 6-72 (98)
18 1rv3_A Serine hydroxymethyltra 33.0 1.2E+02 0.004 26.6 7.3 53 11-76 180-234 (483)
19 1msc_A Bacteriophage MS2 coat 32.8 20 0.00068 26.7 1.8 16 136-151 2-17 (129)
20 3ryc_A Tubulin alpha chain; al 31.9 42 0.0014 30.5 4.2 93 8-103 67-174 (451)
21 2bto_A Tubulin btuba; bacteria 31.5 1.4E+02 0.0049 27.0 7.7 95 7-103 69-176 (473)
22 3o38_A Short chain dehydrogena 31.3 35 0.0012 27.0 3.2 24 64-87 23-46 (266)
23 2btq_B Tubulin btubb; structur 29.6 1E+02 0.0034 27.5 6.3 95 7-104 65-174 (426)
24 2cxa_A Leucyl/phenylalanyl-tRN 29.3 54 0.0019 27.8 4.2 60 5-68 44-130 (256)
25 2pjk_A 178AA long hypothetical 26.2 69 0.0024 24.9 4.1 38 50-87 67-106 (178)
26 3abq_B Ethanolamine ammonia-ly 25.7 1.2E+02 0.0042 26.2 5.9 65 22-86 163-230 (306)
27 1una_A GA unassembled coat pro 25.1 32 0.0011 25.6 1.8 15 137-151 2-16 (129)
28 3c17_A L-asparaginase precurso 24.4 47 0.0016 28.8 3.0 31 32-62 4-37 (320)
29 3pzy_A MOG; ssgcid, seattle st 23.6 78 0.0027 24.2 3.9 65 10-87 26-91 (164)
30 3mwd_A ATP-citrate synthase; A 23.6 1.5E+02 0.005 26.5 6.2 67 2-74 302-384 (425)
31 2him_A L-asparaginase 1; hydro 23.0 2E+02 0.0068 25.0 6.8 41 44-86 83-123 (358)
32 1ts9_A Ribonuclease P protein 22.1 38 0.0013 24.6 1.6 41 23-67 62-102 (102)
33 1nns_A L-asparaginase II; amid 21.6 2.3E+02 0.0078 24.1 6.9 42 43-86 60-101 (326)
34 3kbq_A Protein TA0487; structu 21.3 98 0.0034 24.2 4.1 65 10-86 22-86 (172)
35 1y5e_A Molybdenum cofactor bio 21.2 99 0.0034 23.5 4.1 37 50-86 58-96 (169)
36 1wls_A L-asparaginase; structu 21.2 1.9E+02 0.0064 24.7 6.2 43 42-86 53-95 (328)
37 3ryc_B Tubulin beta chain; alp 20.8 80 0.0027 28.6 3.9 93 9-103 66-172 (445)
38 3ke3_A Putative serine-pyruvat 20.8 2.4E+02 0.0083 23.2 6.8 59 10-75 121-179 (379)
39 3dzz_A Putative pyridoxal 5'-p 20.7 1.9E+02 0.0066 23.3 6.0 56 11-76 147-205 (391)
40 3k40_A Aromatic-L-amino-acid d 20.6 2.2E+02 0.0076 24.7 6.7 66 4-75 206-275 (475)
41 3rfq_A Pterin-4-alpha-carbinol 20.4 1E+02 0.0034 24.3 4.0 38 50-87 76-114 (185)
42 4eq6_B Platinum sensitivity pr 20.3 65 0.0022 27.1 2.9 25 49-73 171-195 (256)
No 1
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=95.89 E-value=0.027 Score=45.92 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=49.7
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 27 ELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 27 ~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
+.++.-|+|.||++ ...+...+.-++ |-++.-..|--|||||-..|+|..+.++..+.. + ..|||-|-
T Consensus 10 ~~~~~~I~Vfg~s~--~~~~~~~~~A~~-lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~G----G--~viGv~p~ 77 (189)
T 3sbx_A 10 EPGRWTVAVYCAAA--PTHPELLELAGA-VGAAIAARGWTLVWGGGHVSAMGAVSSAARAHG----G--WTVGVIPK 77 (189)
T ss_dssp ---CCEEEEECCSS--CCCHHHHHHHHH-HHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTT----C--CEEEEEET
T ss_pred CCCCeEEEEEEeCC--CCChHHHHHHHH-HHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC----C--cEEEEcCc
Confidence 35668899999998 555665555555 555655668899999999999999999997753 2 35887664
No 2
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=95.61 E-value=0.043 Score=45.09 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 28 LPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 28 ~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
..+.-|+|.||++ ...+...+.-++ |-++....|--|||||-..|+|..+.++..+... .+|||-|-.
T Consensus 20 ~~~~~v~Vfggs~--~~~~~~~~~A~~-lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~GG------~viGv~p~~ 87 (199)
T 3qua_A 20 DRQWAVCVYCASG--PTHPELLELAAE-VGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGG------HTVGVIPKA 87 (199)
T ss_dssp -CCCEEEEECCSS--CCCHHHHHHHHH-HHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTTC------CEEEEEEGG
T ss_pred CCCCEEEEEECCC--CCCHHHHHHHHH-HHHHHHHCCCEEEECCCccCHHHHHHHHHHHcCC------cEEEEeCch
Confidence 3446899999998 556666555555 5566556688899999999999999999977532 468876654
No 3
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=95.07 E-value=0.35 Score=38.74 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 25 SLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 25 ~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
.++..+..|+|+|+.+ ....+...+.-++ |.+.....|--|+|||-+.|||..+.++..+.. + .+|||-|-.
T Consensus 8 ~~~~~~~~VaV~Gs~~-~g~~~~~~~~A~~-lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~g----G--~tigVlP~~ 79 (176)
T 2iz6_A 8 CMSGRKPIIGVMGPGK-ADTAENQLVMANE-LGKQIATHGWILLTGGRSLGVMHEAMKGAKEAG----G--TTIGVLPGP 79 (176)
T ss_dssp ---CCCCEEEEECCCG-GGCCHHHHHHHHH-HHHHHHHTTCEEEEECSSSSHHHHHHHHHHHTT----C--CEEEEECC-
T ss_pred cccCCCCeEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHCCCEEEECCCccCHhHHHHHHHHHcC----C--EEEEEeCch
Confidence 3566667899999877 2234555555454 555555569999999999999999999997753 2 367876643
No 4
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=94.10 E-value=0.16 Score=42.02 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=46.1
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
.|+|.||++.-. .+...+.-++ |-+..-..|--|||||-..|+|..+.++..+... .+|||-|
T Consensus 11 ~V~V~ggsr~~~-~~~~~~~A~~-lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG------~~iGv~p 73 (216)
T 1ydh_A 11 KICVFCGSHSGH-REVFSDAAIE-LGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL------HVLGIIP 73 (216)
T ss_dssp EEEEECCSCCCS-SHHHHHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC------CEEEEEE
T ss_pred eEEEEeCCCCCC-CcHHHHHHHH-HHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCC------cEEEEec
Confidence 799999988643 3444444444 5555555699999999999999999999987532 4678766
No 5
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=92.33 E-value=0.62 Score=38.35 Aligned_cols=67 Identities=19% Similarity=0.119 Sum_probs=46.6
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 30 KLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 30 ~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
...|+|++|+.+-.- +...+.-++ |-+.....|--|||||-..|||..+.++..+... .+|||-|-.
T Consensus 13 m~~IaV~cGS~~~~~-~~y~~~A~~-lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~GG------~tiGVlP~~ 79 (215)
T 2a33_A 13 FRRICVFCGSSQGKK-SSYQDAAVD-LGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGR------HVIGIIPKT 79 (215)
T ss_dssp CSEEEEECCSSCCSS-HHHHHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC------CEEEEEESS
T ss_pred CCeEEEEECCCCCCc-hHHHHHHHH-HHHHHHHCCCEEEECCChhhHhHHHHHHHHHcCC------cEEEEcchH
Confidence 347999988887543 333333333 5555555699999999999999999999876532 467776543
No 6
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=92.32 E-value=0.43 Score=38.45 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=45.1
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
.|+|.||++.-. .+...+.-++ |-+..-..|--|||||-..|+|..+.++..+... .+|||-|-+
T Consensus 3 ~V~V~gss~~~~-~~~~~~~A~~-lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~gG------~~iGv~p~~ 67 (191)
T 1t35_A 3 TICVFAGSNPGG-NEAYKRKAAE-LGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGG------TAIGVMPSG 67 (191)
T ss_dssp EEEEECCSSCCS-STHHHHHHHH-HHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTC------CEEEEEETT
T ss_pred EEEEEECCCCCC-ChHHHHHHHH-HHHHHHHCCCEEEECCCcccHHHHHHHHHHHcCC------eEEEEeCch
Confidence 489999887422 3333444444 5555455699999999999999999999877532 367876643
No 7
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=90.79 E-value=0.79 Score=36.21 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=43.0
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
.|+|+|+.+.-. .+...+.-++ |-+.....|--|+|||-. |+|..+.++..+... .+|||-|
T Consensus 3 ~V~V~gs~~~~~-~~~~~~~A~~-lg~~La~~g~~lV~Ggg~-GiM~aa~~gAl~~gG------~tiGV~~ 64 (171)
T 1weh_A 3 LLAVFVSSRLSP-EDPLYARWVR-YGEVLAEEGFGLACGGYQ-GGMEALARGVKAKGG------LVVGVTA 64 (171)
T ss_dssp EEEEECCSSCCT-TSHHHHHHHH-HHHHHHHTTEEEEECCSS-THHHHHHHHHHHTTC------CEEECCC
T ss_pred EEEEEeCCCCCC-CcHHHHHHHH-HHHHHHHCCCEEEeCChh-hHHHHHHHHHHHcCC------cEEEEec
Confidence 589999887633 2233444344 555545569999999997 999999999977532 4688754
No 8
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=88.77 E-value=1.1 Score=36.34 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=42.5
Q ss_pred EEEEecCCCCCCC--cHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 32 LITVQGGKANFEL--QPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 32 VISV~GG~~~f~l--~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
.|+|+|+.+..+- .....+.-++ |-+.....|--|||| ...|||..+.++..+... .+|||-|-
T Consensus 25 ~IaV~Gss~~~~~~~~~~~~~~A~~-lg~~LA~~G~~vVsG-g~~GiM~aa~~gAl~~GG------~~iGVlP~ 90 (195)
T 1rcu_A 25 KVVVVGYSGPVNKSPVSELRDICLE-LGRTLAKKGYLVFNG-GRDGVMELVSQGVREAGG------TVVGILPD 90 (195)
T ss_dssp EEEEEECCSCTTSTTTGGGHHHHHH-HHHHHHHTTCEEEEC-CSSHHHHHHHHHHHHTTC------CEEEEEST
T ss_pred eEEEEecCCCCCccccHHHHHHHHH-HHHHHHHCCCEEEeC-CHHHHHHHHHHHHHHcCC------cEEEEeCC
Confidence 6999999865211 0033333333 444444468899996 578999999999977432 46888665
No 9
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=86.70 E-value=2.2 Score=35.02 Aligned_cols=54 Identities=26% Similarity=0.197 Sum_probs=38.6
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 31 LLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 31 LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
..|+|.||++.-.-+ ...+.-++ |-+.....|--|+|||- .|+|..+.++..+.
T Consensus 38 ~~VaV~Gss~~~~~~-~~~~~A~~-lg~~La~~g~~lVsGGg-~GiM~aa~~gAl~~ 91 (217)
T 1wek_A 38 PLVSVFGSARFGEGH-PAYEAGYR-LGRALAEAGFGVVTGGG-PGVMEAVNRGAYEA 91 (217)
T ss_dssp CEEEEECCSSCCTTS-HHHHHHHH-HHHHHHHHTCEEEECSC-SHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCCc-HHHHHHHH-HHHHHHHCCCEEEeCCh-hhHHHHHHHHHHHc
Confidence 479999998763322 33333333 55554556999999999 99999999998774
No 10
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=85.02 E-value=6.9 Score=35.95 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=41.2
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchh-hHHHHHhhhhccc--CCCceeEEeecc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVT-RQVGDALLMERSQ--RSGRVVSIGIAP 102 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~-k~VG~Av~d~~s~--~~~kv~~IGIAp 102 (192)
++++.||+.. .+...+.-++ |-++.-..|--|+|||-. |+| ..+..|...++.+ ..+ ..|||-|
T Consensus 147 ivVv~GSs~~---~~~~Ye~A~e-LGr~LA~~G~~LVtGGG~-GlMEaa~aGA~~a~s~qr~~GG--~vIGIiP 213 (460)
T 3bq9_A 147 MVVCWGGHSI---NEIEYKYTKD-VGYHIGLRGLNICTGCGP-GAMKGPMKGATIGHAKQRVEGG--RYLGLTE 213 (460)
T ss_dssp EEEEECCSSC---CHHHHHHHHH-HHHHHHHTTCEEEECCSS-GGGTHHHHHHHHHHHHTTCSSC--CEEEEEC
T ss_pred EEEEEcCCCC---CCHHHHHHHH-HHHHHHHCCCEEEeCCcH-HHhhHHHhhHHhhcccccCCCC--EEEEEeC
Confidence 6777887764 3333333333 444555579999999997 999 7788888764321 233 3588854
No 11
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=66.90 E-value=42 Score=30.78 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhCC--CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhH-HHHHhhhhccc
Q psy11223 14 ENILQLFTREWSL--ELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQ-VGDALLMERSQ 90 (192)
Q Consensus 14 ~~i~~l~~~~W~l--~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~-VG~Av~d~~s~ 90 (192)
..++++|.+.=-| ....-|+++.|+... .+...+.-++ |-++.-..|--|+|||- .|+|.. +..|...+...
T Consensus 129 ~~vf~~Lrna~~~~p~r~~~IvV~cGSs~~---~p~yye~A~e-LGr~LA~~G~~LVtGGG-~GLMeAa~aGA~~a~a~q 203 (462)
T 3gh1_A 129 NLVFGILRNAGALIPGATPNLVVCWGGHSI---NEVEYQYTRE-VGHELGLRELNICTGCG-PGAMEGPMKGAAVGHAKQ 203 (462)
T ss_dssp HHHHHHHHHTTCCCTTCCSCEEEEECCSSC---CHHHHHHHHH-HHHHHHHTTCEEEECCS-SGGGTHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccCCCCCCCEEEEECCCCC---CHHHHHHHHH-HHHHHHHCCCEEEeCCc-HHHHHHHHHHHHHhcccc
Confidence 4455666543222 233345556676662 4444444444 55555567889999999 999974 55555553211
Q ss_pred --CCCceeEEeecc
Q psy11223 91 --RSGRVVSIGIAP 102 (192)
Q Consensus 91 --~~~kv~~IGIAp 102 (192)
..++ .|||-|
T Consensus 204 r~aGG~--vIGIiP 215 (462)
T 3gh1_A 204 RYSEYR--YLGLTE 215 (462)
T ss_dssp TCTTCC--EEEEEC
T ss_pred ccCCCe--EEEEcc
Confidence 2333 578765
No 12
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=58.67 E-value=25 Score=26.11 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
.|.+++++-.++. +.|.++|-=+|-...|.+++.+++.|++ -|+..=+| -.++|++.+
T Consensus 47 ~~l~~~~l~~ll~-----~~~evliiGtG~~~~~~~~~~~~~~l~~---------------~gI~ve~m-~T~~A~rty 104 (122)
T 2ab1_A 47 PGVQPADVKEVVE-----KGVQTLVIGRGMSEALKVPSSTVEYLKK---------------HGIDVRVL-QTEQAVKEY 104 (122)
T ss_dssp SCCCHHHHHHHHT-----TCCSEEEEEECSSCCSCCCHHHHHHHHH---------------TTCEEEEE-CHHHHHHHH
T ss_pred hHCCHHHHHHHhh-----CCCCEEEECCCCCCccCCCHHHHHHHHH---------------cCCEEEEe-CHHHHHHHH
Confidence 4578888887764 4699999999999998899998887776 34444443 356777765
No 13
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Probab=50.11 E-value=14 Score=29.48 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=24.3
Q ss_pred EEEEecCCCCCC---CcHHHHHHHHHHHHHHhhh
Q psy11223 32 LITVQGGKANFE---LQPKLKKVLRKGLLKAAKT 62 (192)
Q Consensus 32 VISV~GG~~~f~---l~~~l~~~f~~GL~kaA~s 62 (192)
+|.||||+.+.. +++..++..+++|..|++.
T Consensus 4 ~i~iHGGAG~~~~~~~~~~~~~~~~~~l~~a~~~ 37 (177)
T 1k2x_A 4 VIAIHGGAGAISRAQMSLQQELRYIEALSAIVET 37 (177)
T ss_dssp EEEEEEEEECCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 789999998763 6777777778877777664
No 14
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=48.90 E-value=14 Score=29.96 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=24.8
Q ss_pred eEEEEecCCCCCC--CcHHHHHHHHHHHHHHhhh
Q psy11223 31 LLITVQGGKANFE--LQPKLKKVLRKGLLKAAKT 62 (192)
Q Consensus 31 LVISV~GG~~~f~--l~~~l~~~f~~GL~kaA~s 62 (192)
.+|.|||||.+.. +++...+..+++|.+|++.
T Consensus 7 ~~i~IHGGAG~i~~~~~~~~~~~~~~~l~~a~~~ 40 (195)
T 2gez_A 7 WSIALHGGAGDIPFSLPPERRKPREEGLRHCLQI 40 (195)
T ss_dssp CEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4899999999863 6777777778877777664
No 15
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=38.84 E-value=95 Score=24.27 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhcC-cEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 46 PKLKKVLRKGLLKAAKTTG-AWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 46 ~~l~~~f~~GL~kaA~sTg-aWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
..+++.+++=|....+. | .|+|||| +.|+=...++++.+..... ..+.++=|-|
T Consensus 26 ~~ik~~L~~~l~~l~~~-G~~~~isgg-a~G~D~~aae~vl~lk~~y-~~i~L~~v~P 80 (181)
T 2nx2_A 26 YYIKKAIKNRLIAFLDE-GLEWILISG-QLGVELWAAEAAYDLQEEY-PDLKVAVITP 80 (181)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCEEEECC-CTTHHHHHHHHHHTTTTTC-TTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHhC-CCcEEEECC-CccHHHHHHHHHHHhcccc-CCceEEEEec
Confidence 35667777766665544 5 7999987 5699999999998854222 2345555555
No 16
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=35.61 E-value=1.2e+02 Score=24.49 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccch
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGV 76 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV 76 (192)
.|++.+.+.+.++ .+.+|+......-.-.+.+ + .+ |.+.|+..|+|||-+....+.
T Consensus 158 ~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~-l----~~-i~~l~~~~~~~li~Dea~~~~ 213 (397)
T 3f9t_A 158 IDEKFVKDAVEDY----DVDGIIGIAGTTELGTIDN-I----EE-LSKIAKENNIYIHVDAAFGGL 213 (397)
T ss_dssp BCHHHHHHHHHHS----CCCEEEEEBSCTTTCCBCC-H----HH-HHHHHHHHTCEEEEECTTGGG
T ss_pred CCHHHHHHHHhhc----CCeEEEEECCCCCCCCCCC-H----HH-HHHHHHHhCCeEEEEccccch
Confidence 4888888888764 5777776654322112222 2 23 777888899999999988753
No 17
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=33.82 E-value=51 Score=23.74 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=50.0
Q ss_pred cceEEeeCCCCHHHHHHHHHh--hhCCCCCCeEEEEecCCCCCCCc--HHHHHHHHHHHHHHhhhcC
Q psy11223 2 LQYVRLSYDTRPENILQLFTR--EWSLELPKLLITVQGGKANFELQ--PKLKKVLRKGLLKAAKTTG 64 (192)
Q Consensus 2 a~yiRls~dt~p~~i~~l~~~--~W~l~~P~LVISV~GG~~~f~l~--~~l~~~f~~GL~kaA~sTg 64 (192)
++-+.++.+...+++.+.|.+ ..+|..|.|--.+-|..+++-|+ |-|++.-|..|-|-....|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLg 72 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELG 72 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGT
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhC
Confidence 456788899999999999988 67899999776666667776665 7899999998987666554
No 18
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=32.99 E-value=1.2e+02 Score=26.56 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCC-CcHHHHHHHHHHHHHHhhhcCcEEEeCCccc-ch
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFE-LQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT-GV 76 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~-l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~-GV 76 (192)
.|++.+.+.+.+. .|++|+. +..|.. +.+ +.+ |.+.|+..|+|++.+..+. |+
T Consensus 180 iD~d~le~~i~~~----~tklIi~---~~sn~~~~~d-----l~~-i~~ia~~~g~~livD~ah~~g~ 234 (483)
T 1rv3_A 180 IDYDRLEENARLF----HPKLIIA---GTSCYSRNLD-----YGR-LRKIADENGAYLMADMAHISGL 234 (483)
T ss_dssp BCHHHHHHHHHHH----CCSEEEE---CCSSCCSCCC-----HHH-HHHHHHHTTCEEEEECTTTHHH
T ss_pred CCHHHHHHHHhhc----CCcEEEE---eCCcCCCcCC-----HHH-HHHHHHHcCCEEEEEccchhcc
Confidence 6888888888753 7898876 445543 222 233 7778889999999999876 54
No 19
>1msc_A Bacteriophage MS2 coat protein; translation repressor, viral protein; 2.00A {Enterobacterio phage MS2} SCOP: d.85.1.1 PDB: 2bu1_A* 1u1y_A 1zdi_A 1zdj_A 1zdk_A 1zdh_A* 2c4q_A* 2c4y_A* 2c4z_A* 2c50_A 2c51_A 2iz8_A 2iz9_A* 2izm_A 2izn_A 2ms2_A 5msf_A 6msf_A 7msf_A 1aq3_A ...
Probab=32.76 E-value=20 Score=26.72 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=12.8
Q ss_pred CCCcEEEEeeCCCCCC
Q psy11223 136 NRHAYFLLVDNGTAGK 151 (192)
Q Consensus 136 ~nHshFlLVD~Gt~~~ 151 (192)
.|...|+|||+|-.|.
T Consensus 2 sn~~~fvlvdnggtg~ 17 (129)
T 1msc_A 2 SNFTQFVLVDNGGTGD 17 (129)
T ss_dssp CCCCCEEEECCSSTTC
T ss_pred CcceEEEEEecCCccc
Confidence 4667899999997664
No 20
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...
Probab=31.91 E-value=42 Score=30.46 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=55.6
Q ss_pred eCCCCHHHHHHHHHhhhC-CCCCC-eEEEEecCCCCCC-----CcHHH----HHHHHHHHHHHhhhcCcEEEe----CCc
Q psy11223 8 SYDTRPENILQLFTREWS-LELPK-LLITVQGGKANFE-----LQPKL----KKVLRKGLLKAAKTTGAWVFT----GGT 72 (192)
Q Consensus 8 s~dt~p~~i~~l~~~~W~-l~~P~-LVISV~GG~~~f~-----l~~~l----~~~f~~GL~kaA~sTgaWIiT----gG~ 72 (192)
=-|.+|.++-++....|+ |=.|. +|..--|-+.|+. .-+.+ .+.+|+ ++..+.......|+ |||
T Consensus 67 lvDlEp~vid~v~~g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk-~~E~cD~lqGF~i~hSlgGGT 145 (451)
T 3ryc_A 67 FVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK-LADQCTGLQGFLVFHSFGGGT 145 (451)
T ss_dssp EEESSSHHHHHHHHSTTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHH-HHHTCSSCCEEEEEEESSSHH
T ss_pred eecCCcchhheeeecccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHH-HHHcCCCccceEEEeccCCCC
Confidence 357889999998887664 44555 5554444344442 22333 344555 44444455456655 677
Q ss_pred ccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 73 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 73 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
-+|+.-.+-+.+++.-. ..-+.+++|-|-
T Consensus 146 GSG~gs~lle~L~~ey~--kk~~~~~~v~P~ 174 (451)
T 3ryc_A 146 GSGFTSLLMERLSVDYG--KKSKLEFSIYPA 174 (451)
T ss_dssp HHHHHHHHHHHHHHHTT--TCEEEEEEEECC
T ss_pred CccHHHHHHHHHHHhcC--cceEEEEEEecC
Confidence 78898899898887421 123456777665
No 21
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*
Probab=31.48 E-value=1.4e+02 Score=26.95 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=58.3
Q ss_pred eeCCCCHHHHHHHHHhhhCCCCCC-eEEEEecCCCC-----CCCcHHHHHHHHHHHHHHhhhcC---cEEEe----CCcc
Q psy11223 7 LSYDTRPENILQLFTREWSLELPK-LLITVQGGKAN-----FELQPKLKKVLRKGLLKAAKTTG---AWVFT----GGTN 73 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W~l~~P~-LVISV~GG~~~-----f~l~~~l~~~f~~GL~kaA~sTg---aWIiT----gG~~ 73 (192)
+--|++|..+-++....=.+=.|+ ++..-.|-..| +..-....+.+..-+-|.++..+ .-.|| |||-
T Consensus 69 v~vDlep~vi~~i~~~~~~lf~p~~~it~~~GAgnn~a~G~~~~G~~~~ee~~d~Ir~~~e~cD~lqgf~i~~slgGGTG 148 (473)
T 2bto_A 69 IMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTG 148 (473)
T ss_dssp EEEESSSHHHHHHHHHSTTCSCGGGEEECSSCCTTCHHHHHTSHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSHH
T ss_pred eEecCcchhhhhhhccccccccccceEecccCCCCCcCCCcchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeeCCCCCC
Confidence 556889999888876652233565 44444444455 44444444444444555666554 35554 6777
Q ss_pred cchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 74 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 74 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
+|+.-.+.+.++|.-. ..-+.+++|-|-
T Consensus 149 SG~~~~l~e~l~e~y~--~~~ilt~~V~P~ 176 (473)
T 2bto_A 149 SGFGALLIESLKEKYG--EIPVLSCAVLPS 176 (473)
T ss_dssp HHHHHHHHHHHHHHTC--SSCEEEEEEECC
T ss_pred cchHHHHHHHHHHHcC--CCceEEEEEecC
Confidence 8999999999988521 123667888765
No 22
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=31.26 E-value=35 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.8
Q ss_pred CcEEEeCCcccchhhHHHHHhhhh
Q psy11223 64 GAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 64 gaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
...+||||+..||.+.+.+.+.++
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~ 46 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLE 46 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCchHHHHHHHHHHC
Confidence 357788887778888888777654
No 23
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}
Probab=29.63 E-value=1e+02 Score=27.48 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=47.8
Q ss_pred eeCCCCHHHHHHHHHhhh-CCCCCC-eEEEEecCCC-C-----CCCcHHHHHHHHHHHHHHhhhcCc---EEEe----CC
Q psy11223 7 LSYDTRPENILQLFTREW-SLELPK-LLITVQGGKA-N-----FELQPKLKKVLRKGLLKAAKTTGA---WVFT----GG 71 (192)
Q Consensus 7 ls~dt~p~~i~~l~~~~W-~l~~P~-LVISV~GG~~-~-----f~l~~~l~~~f~~GL~kaA~sTga---WIiT----gG 71 (192)
+..|++|..+-++..... +|=.|+ +++.-. |+. | ++.-..+.+.+..-+-|.++..+. -.|| ||
T Consensus 65 v~vDle~~~l~~i~~~~~~~lf~p~~i~~g~~-gAgnn~a~G~~~~G~~~~e~~~d~Ir~~~e~cD~lqgf~i~~s~gGG 143 (426)
T 2btq_B 65 VLVDLEPGVIARIEGGDMSQLFDESSIVRKIP-GAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGG 143 (426)
T ss_dssp EEEEECC------------CCCCTTSEEECCS-CCTTCHHHHHTHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEEESSSS
T ss_pred EEEecCccccccccccccccccCccccccccc-CccCcccccccchhHHHHHHHHHHHHHHHhcCCCcceEEEEEecCCC
Confidence 456788887776655332 232354 554433 444 4 333334444444445566665543 5554 67
Q ss_pred cccchhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 72 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 72 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
|-+|..-.+.+.++|.-. ..-+.+++|-|-.
T Consensus 144 TGSG~~~~l~e~l~~~y~--~~~~lt~~V~p~p 174 (426)
T 2btq_B 144 SGSGLGSLILERLRQAYP--KKRIFTFSVVPSP 174 (426)
T ss_dssp TTTHHHHHHHHHHHTTCT--TSEEEEEEEECCG
T ss_pred ccccHHHHHHHHHHHHcC--cCceEEEEEecCC
Confidence 778999999999988421 1235678886653
No 24
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=29.34 E-value=54 Score=27.77 Aligned_cols=60 Identities=17% Similarity=0.467 Sum_probs=42.6
Q ss_pred EEeeCCCCHHHHHHHHHh------------hhCCCCCCeEEEEecCCCCCCCcHHHHHHHHH------------HHHHHh
Q psy11223 5 VRLSYDTRPENILQLFTR------------EWSLELPKLLITVQGGKANFELQPKLKKVLRK------------GLLKAA 60 (192)
Q Consensus 5 iRls~dt~p~~i~~l~~~------------~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~------------GL~kaA 60 (192)
+-++-|.+|+.++..-.. -|--+.|+.||-. .+|.++..|++.+|+ ..|.++
T Consensus 44 lA~GgdLsp~rLl~AY~~GiFPw~~~~~pilWwsP~pR~Vl~p----~~~hisrSLrk~lr~~~f~vt~n~aF~~VI~~C 119 (256)
T 2cxa_A 44 LALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWP----ESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC 119 (256)
T ss_dssp EEECCCCCHHHHHHHHHHTCEECCCTTSCCEEECCSSEEEECG----GGCCCCHHHHHHHHTCCCEEEESSCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHhcCcccCCCCCCccceECCCCCEEecc----ccccCCHHHHHHHCCCCeEEEEcCcHHHHHHHh
Confidence 445667888877665322 4778999999975 579999999999886 566665
Q ss_pred hh---cCcEEE
Q psy11223 61 KT---TGAWVF 68 (192)
Q Consensus 61 ~s---TgaWIi 68 (192)
.. .|+||-
T Consensus 120 a~~R~~gTWI~ 130 (256)
T 2cxa_A 120 ASDREEGTWIT 130 (256)
T ss_dssp HTC---CTTCC
T ss_pred cCCCCCCCCCC
Confidence 42 467753
No 25
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=26.22 E-value=69 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhh--cCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 50 KVLRKGLLKAAKT--TGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 50 ~~f~~GL~kaA~s--TgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
+.+++-|.++++. .+.-|+|||+-.|--=++-+|+++.
T Consensus 67 ~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 67 IKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKL 106 (178)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHHH
Confidence 4445555557766 7899999999888666666676553
No 26
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=25.73 E-value=1.2e+02 Score=26.23 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=46.8
Q ss_pred hhhCCCCCCeEEEEecCCCCCCCcH---HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 22 REWSLELPKLLITVQGGKANFELQP---KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 22 ~~W~l~~P~LVISV~GG~~~f~l~~---~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
++|.-+.|.+.|.|-=|.+...+.. .+-..|.++|-.+-=+.+.=++--.-.+.++-.+|+++..
T Consensus 163 ~~~~~~~~DV~iVIaDGLSa~Ai~~na~~~l~aL~~~L~~~g~~vap~v~v~qgRValgDeIge~L~A 230 (306)
T 3abq_B 163 KAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGA 230 (306)
T ss_dssp HHHSCSSCSEEEEEECTTCSHHHHTTHHHHHHHHHHHHHTTTCCBCCCEEEETCCTTHHHHHHHHHTC
T ss_pred HHhcCCCCCEEEEEeCCCCHHHHHHhHHHHHHHHHHHHHhcCCCcCCeEEEeeCeehHHHHHHHHHCC
Confidence 4566678999999999998876553 4445566666433345565556556689999999999964
No 27
>1una_A GA unassembled coat protein dimer; unassembled virus coat protein dimer, bacteriophage, RNA- binding dimer, translational repressor; 2.80A {Enterobacteria phage GA} SCOP: d.85.1.1 PDB: 1gav_A
Probab=25.08 E-value=32 Score=25.55 Aligned_cols=15 Identities=47% Similarity=0.742 Sum_probs=11.5
Q ss_pred CCcEEEEeeCCCCCC
Q psy11223 137 RHAYFLLVDNGTAGK 151 (192)
Q Consensus 137 nHshFlLVD~Gt~~~ 151 (192)
|-..|+|||+|-.|.
T Consensus 2 ~~~~fvlvdnggtg~ 16 (129)
T 1una_A 2 TLHSFVLVDNGGTGN 16 (129)
T ss_dssp CSCCEEEECSSSSSC
T ss_pred cceEEEEEecCCccc
Confidence 445799999997664
No 28
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoprot precursor, hydrolase; 1.95A {Escherichia coli} PDB: 2zak_A
Probab=24.37 E-value=47 Score=28.82 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=23.5
Q ss_pred EEEEecCCCCC---CCcHHHHHHHHHHHHHHhhh
Q psy11223 32 LITVQGGKANF---ELQPKLKKVLRKGLLKAAKT 62 (192)
Q Consensus 32 VISV~GG~~~f---~l~~~l~~~f~~GL~kaA~s 62 (192)
+|.||||+.+. .+++..++..+++|-+|++.
T Consensus 4 ~i~iHGGAG~~~~~~~~~~~~~~~~~~l~~a~~~ 37 (320)
T 3c17_A 4 VIAIHGGAGAISRAQMSLQQELRYIEALSAIVET 37 (320)
T ss_dssp EEEEEEEEEEECGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 78899999876 36777777777777777664
No 29
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.58 E-value=78 Score=24.21 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhh-hcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 10 DTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAK-TTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 10 dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~-sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
|++-..+..++ ++|+.+.-...+. . .. +.+++-|.+|++ ..+.-|+|||+-.|--=++-+|+++.
T Consensus 26 Dsn~~~l~~~l-~~~G~~v~~~~iv--~--------Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~ 91 (164)
T 3pzy_A 26 DRCGPIITEWL-AQQGFSSAQPEVV--A--------DG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAV 91 (164)
T ss_dssp CCHHHHHHHHH-HHTTCEECCCEEE--C--------SS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred eHHHHHHHHHH-HHCCCEEEEEEEe--C--------CH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHH
Confidence 45544455544 6677664433221 1 12 333444445654 67999999999998766666777654
No 30
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=23.55 E-value=1.5e+02 Score=26.53 Aligned_cols=67 Identities=25% Similarity=0.360 Sum_probs=45.0
Q ss_pred cceEEeeCCCCHHHHH-------HHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhc-------C--c
Q psy11223 2 LQYVRLSYDTRPENIL-------QLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTT-------G--A 65 (192)
Q Consensus 2 a~yiRls~dt~p~~i~-------~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sT-------g--a 65 (192)
|+|+=++-..+.+.++ +++++.++... .+|-+.||..+++. +-.+| +|+++|.+.. . -
T Consensus 302 ANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~--i~vnIfGGI~~cd~---vA~t~-~GIi~A~~~~~~~~~~~~~Pi 375 (425)
T 3mwd_A 302 ANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTN---VAATF-KGIVRAIRDYQGPLKEHEVTI 375 (425)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTC--EEEEECBCBCSSSC---HHHHH-HHHHHHHHHTHHHHHHTTEEE
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCE--EEEEecCCcccHHH---HHHHH-hHHHHHHHHhhhccccCCCcE
Confidence 7899999999988885 55555554432 56667899999874 11111 6888888753 2 2
Q ss_pred EEEeCCccc
Q psy11223 66 WVFTGGTNT 74 (192)
Q Consensus 66 WIiTgG~~~ 74 (192)
++==+|+|.
T Consensus 376 vVRl~Gtn~ 384 (425)
T 3mwd_A 376 FVRRGGPNY 384 (425)
T ss_dssp EEECBSTTH
T ss_pred EEECCcCCH
Confidence 444578886
No 31
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=22.99 E-value=2e+02 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 44 LQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 44 l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
|.+.....+.+-+.++.+....-|||-|||+ |-+.+-++.-
T Consensus 83 mt~~~w~~la~~I~~~~~~~dG~VItHGTDT--meeTA~~Ls~ 123 (358)
T 2him_A 83 MTPEDWQHIAEDIKAHYDDYDGFVILHGTDT--MAYTASALSF 123 (358)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSEEEEECCSTT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEecCchH--HHHHHHHHHH
Confidence 5554444555545555556789999999999 9999999864
No 32
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=22.06 E-value=38 Score=24.65 Aligned_cols=41 Identities=24% Similarity=0.543 Sum_probs=30.4
Q ss_pred hhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEE
Q psy11223 23 EWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWV 67 (192)
Q Consensus 23 ~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWI 67 (192)
.+.+..|...+.|.|..=.+....|+++.|+ +.|-+ .|.||
T Consensus 62 vF~f~l~~~~~~I~G~~l~~Rp~dR~~kk~K--~~~~~--~~~~~ 102 (102)
T 1ts9_A 62 TFRVWYKGKIMRIKGDLINFRPEDRIKRGLM--MLKRA--KGVWI 102 (102)
T ss_dssp EEEEEETTEEEEEEGGGTCSCHHHHHHHHHH--HHHHT--TTCCC
T ss_pred EEEEEECCEEEEEECceeccChHHHhhhhhh--hhhhc--ccccC
Confidence 3456678999999997777777778888888 44444 48886
No 33
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=21.58 E-value=2.3e+02 Score=24.13 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 43 ELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 43 ~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
.|.+.....+.+-+.++.+.-..-|||-|||+ |-+.+-++.-
T Consensus 60 ~mt~~~w~~la~~I~~~~~~~dG~VItHGTDT--meeTA~~Ls~ 101 (326)
T 1nns_A 60 DMNDNVWLTLAKKINTDCDKTDGFVITHGTDT--MEETAYFLDL 101 (326)
T ss_dssp GCCHHHHHHHHHHHHHHGGGCSEEEEECCSSS--HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcCCcEEEEcCchh--HHHHHHHHHH
Confidence 35555555555545555554589999999999 9999999865
No 34
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.34 E-value=98 Score=24.16 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 10 DTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 10 dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
|++-..+..++ ++|+++.-. ..+++.. ...+++. |.++++..+.-|+|||+-.|--=++-+|+++
T Consensus 22 DtN~~~l~~~L-~~~G~~v~~--~~iv~Dd-----~~~I~~~----l~~a~~~~DlVittGG~g~~~~D~T~ea~a~ 86 (172)
T 3kbq_A 22 NTNAAFIGNFL-TYHGYQVRR--GFVVMDD-----LDEIGWA----FRVALEVSDLVVSSGGLGPTFDDMTVEGFAK 86 (172)
T ss_dssp CHHHHHHHHHH-HHTTCEEEE--EEEECSC-----HHHHHHH----HHHHHHHCSEEEEESCCSSSTTCCHHHHHHH
T ss_pred eHHHHHHHHHH-HHCCCEEEE--EEEeCCC-----HHHHHHH----HHHHHhcCCEEEEcCCCcCCcccchHHHHHH
Confidence 33434444444 567765322 2333321 2344444 4456667899999999988754455555543
No 35
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.24 E-value=99 Score=23.52 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhh--hcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 50 KVLRKGLLKAAK--TTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 50 ~~f~~GL~kaA~--sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
+.+++-|.++++ ..+.-|+|||+-.|--=++-+|+++
T Consensus 58 ~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~ 96 (169)
T 1y5e_A 58 ESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSA 96 (169)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHHHH
Confidence 344444555666 6789999999988755556666654
No 36
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=21.18 E-value=1.9e+02 Score=24.74 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 42 FELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 42 f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
-.|.+.....+.+-+.++.+....-|||-|||+ |-+.+-++..
T Consensus 53 ~~mt~~~w~~la~~I~~~~~~~dG~VItHGTDT--meeTA~~Ls~ 95 (328)
T 1wls_A 53 TLIQPSDWERLAKEIEKEVWEYDGIVITHGTDT--MAYSASMLSF 95 (328)
T ss_dssp GGCCHHHHHHHHHHHHHHTTTCSEEEEECCGGG--HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCCeEEEEcCCch--HHHHHHHHHH
Confidence 345555555555545555556789999999999 9999999973
No 37
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...
Probab=20.79 E-value=80 Score=28.55 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHhhh-CCCCC-CeEEEEecCCCCCC-----CcHHHHHHHHHHHHHHhhhcC---cEEEe----CCccc
Q psy11223 9 YDTRPENILQLFTREW-SLELP-KLLITVQGGKANFE-----LQPKLKKVLRKGLLKAAKTTG---AWVFT----GGTNT 74 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W-~l~~P-~LVISV~GG~~~f~-----l~~~l~~~f~~GL~kaA~sTg---aWIiT----gG~~~ 74 (192)
-|.+|.++-++..... +|=.| ++|..--|-+.|+. .-+.+.+.+..-+-|.++..+ .-.|+ |||-+
T Consensus 66 vDlEp~vid~i~~g~~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGS 145 (445)
T 3ryc_B 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145 (445)
T ss_dssp EESSSHHHHHHHTSTTGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHH
T ss_pred ecCCchhhhhhhcccccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCC
Confidence 5778998888876543 34455 55555544445543 223343333333444555443 35554 78889
Q ss_pred chhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 75 GVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 75 GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
|+.-.+-+.+++.-. ..-+.+++|-|-
T Consensus 146 G~gs~lle~L~~ey~--kk~~~~~sV~Ps 172 (445)
T 3ryc_B 146 GMGTLLISKIREEYP--DRIMNTFSVMPS 172 (445)
T ss_dssp HHHHHHHHHHHHHCT--TSEEEEEEEECC
T ss_pred cHHHHHHHHHHHHcC--ccccceEEEEeC
Confidence 999999999987422 113456777664
No 38
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=20.78 E-value=2.4e+02 Score=23.15 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccc
Q psy11223 10 DTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTG 75 (192)
Q Consensus 10 dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~G 75 (192)
..+++.+.+.+.++ .+++|+.++.....-.+.+. + +-+.|.+.|+..|+|++..+...|
T Consensus 121 ~~d~~~l~~~i~~~----~~~~v~~~~~~~~~G~~~~~--~-~l~~i~~~~~~~~~~li~D~~~~g 179 (379)
T 3ke3_A 121 PVDIETAVAKIKED----KSAIVYAPHVETSSGIILSE--E-YIKALSEAVHSVGGLLVIDCIASG 179 (379)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEESEETTTTEECCH--H-HHHHHHHHHHHTTCEEEEECTTCT
T ss_pred CCCHHHHHHHHhhc----CCcEEEEEeecCCCceeCCH--H-HHHHHHHHHHHcCCEEEEEecccC
Confidence 36889988888654 57777655432211112221 1 123377788899999999988654
No 39
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=20.74 E-value=1.9e+02 Score=23.35 Aligned_cols=56 Identities=2% Similarity=0.064 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCC---CcHHHHHHHHHHHHHHhhhcCcEEEeCCcccch
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFE---LQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGV 76 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~---l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV 76 (192)
.+++.+.+.+.+ +.+++|+...- .|-. +++. -+++ |.+.|+..|+|+|-.....+.
T Consensus 147 ~d~~~l~~~l~~----~~~~~v~i~~p--~nptG~~~~~~---~l~~-i~~~~~~~~~~li~De~~~~~ 205 (391)
T 3dzz_A 147 VNWADLEEKLAT----PSVRMMVFCNP--HNPIGYAWSEE---EVKR-IAELCAKHQVLLISDEIHGDL 205 (391)
T ss_dssp CCHHHHHHHHTS----TTEEEEEEESS--BTTTTBCCCHH---HHHH-HHHHHHHTTCEEEEECTTTTC
T ss_pred ecHHHHHHHHhc----cCceEEEEECC--CCCCCcccCHH---HHHH-HHHHHHHCCCEEEEecccccc
Confidence 688888888754 36777654332 3322 2211 1333 777889999999998887754
No 40
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=20.60 E-value=2.2e+02 Score=24.72 Aligned_cols=66 Identities=9% Similarity=0.202 Sum_probs=40.3
Q ss_pred eEEeeCC---CCHHHHHHHHHhhhCCC-CCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccc
Q psy11223 4 YVRLSYD---TRPENILQLFTREWSLE-LPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTG 75 (192)
Q Consensus 4 yiRls~d---t~p~~i~~l~~~~W~l~-~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~G 75 (192)
.+.+..| .+|+.+-+.+.+.-.-. .|.+|+...|-...-.+. .+ .+ |.+.|+..|+|++-.|...|
T Consensus 206 ~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~-~l----~~-I~~la~~~~~~lhvD~A~~~ 275 (475)
T 3k40_A 206 LRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD-YL----DE-CGPVGNKHNLWIHVDAAYAG 275 (475)
T ss_dssp EEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CH----HH-HHHHHHHTTCEEEEECTTGG
T ss_pred eEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC-CH----HH-HHHHHHHhCCeEEEeHHhHH
Confidence 3444444 68999999887643211 255555554433322232 33 22 67788889999999997765
No 41
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.39 E-value=1e+02 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=26.2
Q ss_pred HHHHHHHHHHh-hhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 50 KVLRKGLLKAA-KTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 50 ~~f~~GL~kaA-~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
+.+++-|.+++ +..+.-|+|||+-.|--=++-+|+++.
T Consensus 76 ~~I~~al~~a~~~~~DlVIttGGts~g~~D~t~eal~~l 114 (185)
T 3rfq_A 76 VDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREI 114 (185)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCcccHHHHHHHH
Confidence 33444455554 567999999999988766666777653
No 42
>4eq6_B Platinum sensitivity protein 3; DNA binding protein; 1.80A {Saccharomyces cerevisiae} PDB: 4dt1_B
Probab=20.25 E-value=65 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhhcCcEEEeCCcc
Q psy11223 49 KKVLRKGLLKAAKTTGAWVFTGGTN 73 (192)
Q Consensus 49 ~~~f~~GL~kaA~sTgaWIiTgG~~ 73 (192)
-+.+.|-|-+.-++.|+||||-|.-
T Consensus 171 ~~~L~kiLk~Lr~tfGCwIiT~syg 195 (256)
T 4eq6_B 171 FEKLFKILRKLREFLGCWIITKSFP 195 (256)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCeEEEEeccC
Confidence 3556664555566779999998753
Done!