Query psy11223
Match_columns 192
No_of_seqs 111 out of 199
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 21:20:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t35a_ c.129.1.1 (A:) Hypothe 94.9 0.038 2.8E-06 42.2 7.4 62 33-102 4-65 (179)
2 d2q4oa1 c.129.1.1 (A:8-190) Hy 93.8 0.099 7.2E-06 40.0 7.6 63 32-102 8-70 (183)
3 d1ydhb_ c.129.1.1 (B:) Hypothe 93.2 0.13 9.5E-06 39.2 7.4 63 33-103 5-67 (181)
4 d1weha_ c.129.1.1 (A:) Hypothe 93.1 0.17 1.3E-05 38.3 7.9 62 32-102 3-64 (171)
5 d1rcua_ c.129.1.1 (A:) Hypothe 91.8 0.23 1.6E-05 37.4 7.1 62 33-102 4-67 (170)
6 d1weka_ c.129.1.1 (A:) Hypothe 90.5 0.4 2.9E-05 37.3 7.6 64 31-103 34-97 (208)
7 d1tuba1 c.32.1.1 (A:1-245) Tub 69.0 5.7 0.00041 31.2 6.7 92 9-103 68-174 (245)
8 d1y8xb1 c.111.1.2 (B:349-440) 66.0 3.3 0.00024 28.3 4.1 64 1-64 1-68 (92)
9 d2btoa1 c.32.1.1 (A:3-246) Tub 62.4 5.6 0.00041 31.2 5.4 93 9-104 69-175 (244)
10 d1tubb1 c.32.1.1 (B:1-245) Tub 49.8 3.9 0.00029 32.1 2.4 79 8-87 65-158 (243)
11 d2fr1a1 c.2.1.2 (A:1657-1915) 41.4 9.7 0.0007 28.5 3.5 22 64-86 10-31 (259)
12 d1nnsa_ c.88.1.1 (A:) Asparagi 37.7 37 0.0027 27.0 6.8 44 42-87 59-102 (326)
13 d1eucb1 c.23.4.1 (B:246-393) S 35.6 68 0.005 22.9 7.4 53 2-63 46-101 (148)
14 d1sr9a1 a.5.7.1 (A:437-491) 2- 34.6 14 0.00098 22.6 2.7 31 17-63 2-32 (55)
15 d2q4qa1 c.103.1.1 (A:2-122) Hy 34.4 33 0.0024 23.7 5.2 58 9-87 46-103 (121)
16 d2ocda1 c.88.1.1 (A:2-337) Asp 32.0 43 0.0031 26.6 6.3 43 42-86 60-102 (336)
17 d2nqra3 c.57.1.2 (A:178-326) M 29.6 27 0.002 24.6 4.1 38 50-87 54-91 (149)
18 d1uz5a3 c.57.1.2 (A:181-328) M 27.6 34 0.0024 24.0 4.3 39 49-87 53-91 (148)
19 d2e7ja1 c.67.1.9 (A:8-371) Sel 27.6 73 0.0053 23.7 6.7 57 11-74 123-180 (364)
20 d1pvda1 c.31.1.3 (A:182-360) P 24.1 28 0.0021 24.8 3.4 43 27-77 29-71 (179)
21 d2ftsa3 c.57.1.2 (A:499-653) G 23.8 46 0.0034 23.2 4.5 37 49-85 53-89 (155)
22 d1uaya_ c.2.1.2 (A:) Type II 3 23.2 25 0.0018 25.3 2.9 30 66-100 4-33 (241)
23 d1ppja1 d.185.1.1 (A:2-233) Cy 23.1 24 0.0017 25.3 2.8 28 12-41 177-204 (232)
24 d1t0ya_ d.15.1.1 (A:) Ubiquiti 23.0 73 0.0053 20.2 5.1 37 5-41 20-56 (90)
25 d1zq1a2 c.88.1.1 (A:76-438) Gl 23.0 91 0.0066 25.0 6.8 73 11-87 43-116 (363)
26 d1hr6b1 d.185.1.1 (B:24-245) M 22.7 27 0.002 24.6 3.0 29 11-41 167-195 (222)
27 d2a7va1 c.67.1.4 (A:26-488) Se 21.4 75 0.0055 26.8 6.0 52 11-74 163-214 (463)
No 1
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=94.90 E-value=0.038 Score=42.20 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=44.5
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 33 ITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 33 ISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
|+|.||++.-. .+...+.-++ |-+..-..|-.+||||-..|+|..+.+++++... ..|||.|
T Consensus 4 v~VF~~s~~~~-~~~~~~~a~~-lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~gg------~v~gv~~ 65 (179)
T d1t35a_ 4 ICVFAGSNPGG-NEAYKRKAAE-LGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGG------TAIGVMP 65 (179)
T ss_dssp EEEECCSSCCS-STHHHHHHHH-HHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTC------CEEEEEE
T ss_pred EEEEccCCCCc-CCHHHHHHHH-HHHHHHHCCCeEEECCCchHHHHHHhcchhhcCC------ceecccc
Confidence 89999998644 3333343333 5555555799999999999999999999987542 3477655
No 2
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=93.81 E-value=0.099 Score=40.00 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
=|+|.||++.-. .+...+.-++ |-+..-..|--|||||-..|+|..+.++..+... + .|||-|
T Consensus 8 ~v~Vf~gs~~~~-~~~~~~~a~~-lg~~la~~g~~lV~GGG~~GlMga~a~ga~~~gg----~--v~Gi~~ 70 (183)
T d2q4oa1 8 RICVFCGSSQGK-KSSYQDAAVD-LGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGR----H--VIGIIP 70 (183)
T ss_dssp EEEEECCSSCCS-SHHHHHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC----C--EEEEEE
T ss_pred eEEEECcCCCCc-CCHHHHHHHH-HHHHHHHcCCeEEECCCCcchHHHHHHHHHhcCC----c--cccccc
Confidence 489999997544 4444444444 5566667788899999999999999999977542 3 466654
No 3
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=93.23 E-value=0.13 Score=39.23 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=42.7
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 33 ITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 33 ISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
|+|.||++.-.-++. .+.-++ |-+..-..|-=+||||-..|+|..+.+++++... + .|||.|=
T Consensus 5 v~Vf~gs~~~~~~~~-~~~a~~-lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg----~--viGv~~~ 67 (181)
T d1ydhb_ 5 ICVFCGSHSGHREVF-SDAAIE-LGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL----H--VLGIIPK 67 (181)
T ss_dssp EEEECCSCCCSSTHH-HHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC----C--EEEEEEG
T ss_pred EEEEccCCCCcCCHH-HHHHHH-HHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCC----c--ccccchh
Confidence 799999975443333 333233 3334444577789999999999999999988643 3 4777553
No 4
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}
Probab=93.08 E-value=0.17 Score=38.34 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 32 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 32 VISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
.|+|.||++.-.-++-.+++ ++ |-++.-..|-.++|||-. |+|..+.+..++... + .|||-|
T Consensus 3 ~V~Vfgss~~~~~~~~~~~a-~~-lG~~la~~g~~lv~GGg~-G~M~a~a~ga~~~gG----~--~iGv~~ 64 (171)
T d1weha_ 3 LLAVFVSSRLSPEDPLYARW-VR-YGEVLAEEGFGLACGGYQ-GGMEALARGVKAKGG----L--VVGVTA 64 (171)
T ss_dssp EEEEECCSSCCTTSHHHHHH-HH-HHHHHHHTTEEEEECCSS-THHHHHHHHHHHTTC----C--EEECCC
T ss_pred EEEEEecCCCCCCCHHHHHH-HH-HHHHHHHCCCceeeCcch-HHHHHHHHHHHhccC----c--eeeeee
Confidence 48999999754433333322 22 445555579999999986 999999999987532 3 588853
No 5
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=91.85 E-value=0.23 Score=37.39 Aligned_cols=62 Identities=26% Similarity=0.440 Sum_probs=39.3
Q ss_pred EEEecCCCCCCCcH--HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeecc
Q psy11223 33 ITVQGGKANFELQP--KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 102 (192)
Q Consensus 33 ISV~GG~~~f~l~~--~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 102 (192)
|+|.|++..-.-+| .+++.-.+ |-+..-..|-=|+|||. .|+|..+.+..+++.. ..|||-|
T Consensus 4 v~v~~~~~~~~~~p~~~~~~~a~~-lG~~la~~g~~V~~GG~-~GlM~ava~ga~~~gg------~viGilP 67 (170)
T d1rcua_ 4 VVVVGYSGPVNKSPVSELRDICLE-LGRTLAKKGYLVFNGGR-DGVMELVSQGVREAGG------TVVGILP 67 (170)
T ss_dssp EEEEECCSCTTSTTTGGGHHHHHH-HHHHHHHTTCEEEECCS-SHHHHHHHHHHHHTTC------CEEEEES
T ss_pred EEEEEEecCCCCCcchHHHHHHHH-HHHHHHHCCCEEECCCc-cCHHHHHHHHHHhcCC------ccccccc
Confidence 56788765544332 45555444 43333335766677665 7999999999987642 3588866
No 6
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}
Probab=90.53 E-value=0.4 Score=37.27 Aligned_cols=64 Identities=28% Similarity=0.276 Sum_probs=43.9
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 31 LLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 31 LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
..|+|.||++.-.-++..+.+ ++ |-+..-..|-=|+|||-. |+|..+.++.++... ..|||.+.
T Consensus 34 ~~V~Vfgsa~~~~~~~~y~~A-~~-LG~~La~~g~~lv~GGg~-GlMgava~ga~~~gG------~viGi~~~ 97 (208)
T d1weka_ 34 PLVSVFGSARFGEGHPAYEAG-YR-LGRALAEAGFGVVTGGGP-GVMEAVNRGAYEAGG------VSVGLNIE 97 (208)
T ss_dssp CEEEEECCSSCCTTSHHHHHH-HH-HHHHHHHHTCEEEECSCS-HHHHHHHHHHHHTTC------CEEEEEEC
T ss_pred CeEEEECCCCCCCcChHHHHH-HH-HHHHHHhCcceEEeCCCc-hHHHHHHhhhhhcCC------ceeccccc
Confidence 459999999864434433332 22 444444568889999996 999999999877542 35888664
No 7
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=69.00 E-value=5.7 Score=31.25 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHh--hhCCCCCCeEEEEecCCCCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy11223 9 YDTRPENILQLFTR--EWSLELPKLLITVQGGKANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTN 73 (192)
Q Consensus 9 ~dt~p~~i~~l~~~--~W~l~~P~LVISV~GG~~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG~~ 73 (192)
-|++|.++-+++.. .|.+.+-+++..--|...|+. +..++.+.+|| .+..+++...-+++ |||-
T Consensus 68 vD~E~~vI~~i~~~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk-~~E~cD~l~gf~i~hSl~GGTG 146 (245)
T d1tuba1 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK-LADQCTGLQGFSVFHSFGGGTG 146 (245)
T ss_dssp EESSHHHHHHHSGGGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHH-HTTSSSCCCCEEEECCSSCGGG
T ss_pred ecCCcceeeeeccCcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHH-HHHhCCCcCceeeeeecCCcCc
Confidence 37899999999876 445676665555555445554 44566677777 77777777777775 7999
Q ss_pred cchhhHHHHHhhhhcccCCCceeEEeeccc
Q psy11223 74 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 103 (192)
Q Consensus 74 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 103 (192)
.|+.-.+-+.++|.-.+ .-+...-|.|.
T Consensus 147 SGlGs~l~e~l~d~yp~--~~~~~~~V~P~ 174 (245)
T d1tuba1 147 SGFTSLLMERLSVDYGK--KSKLEFSIYPA 174 (245)
T ss_dssp THHHHHHTHHHHHHTTT--SCEEEEECCCC
T ss_pred CchhHHHHHHHHHhccc--ccccceEEecc
Confidence 99999999999985322 22445666665
No 8
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.00 E-value=3.3 Score=28.31 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=52.7
Q ss_pred CcceEEeeCCCCHHHHHHHHHhh--hCCCCCCeEEEEecCCCCCCCc--HHHHHHHHHHHHHHhhhcC
Q psy11223 1 MLQYVRLSYDTRPENILQLFTRE--WSLELPKLLITVQGGKANFELQ--PKLKKVLRKGLLKAAKTTG 64 (192)
Q Consensus 1 ~a~yiRls~dt~p~~i~~l~~~~--W~l~~P~LVISV~GG~~~f~l~--~~l~~~f~~GL~kaA~sTg 64 (192)
+++.+.++.+...+++.+.+.+. .+|..|.+--++-|+.+.+-|+ |.|++.-|..|-|-....|
T Consensus 1 ~p~~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLg 68 (92)
T d1y8xb1 1 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELG 68 (92)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGT
T ss_pred CCceEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhC
Confidence 46788999999999999999884 8999999988887777777664 7799999998877665553
No 9
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=62.42 E-value=5.6 Score=31.17 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCC-CC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCccc
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKAN-FE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTNT 74 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~-f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG~~~ 74 (192)
-|++|..+-++-...+.+=.|+-.|+=..|+.| +. +...+.+.+|| .+..+++...-+++ |||-.
T Consensus 69 iD~Ep~vi~~~~~~~~~~f~~~~~i~~~~gsgnNwa~Gy~~~G~~~~d~i~d~irk-~~E~cD~l~gf~i~hSl~GGTGS 147 (244)
T d2btoa1 69 VDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDY-EIDKCDNVGGIIVLHAIGGGTGS 147 (244)
T ss_dssp EESSSHHHHHHHHHSTTCSCGGGEEECSSCCTTCHHHHHTSHHHHHHHHHHHHHHH-HHHHCSSEEEEEEEEESSSSHHH
T ss_pred EcCCcchhhhhccccccccCcccccccccccccchhhhcchhHHHHHHHHHHHHHH-HHHhCCCccceeEeeeecccccc
Confidence 477889988887666556667777766666644 32 22445566666 56666666666665 99999
Q ss_pred chhhHHHHHhhhhcccCCCceeEEeecccc
Q psy11223 75 GVTRQVGDALLMERSQRSGRVVSIGIAPWG 104 (192)
Q Consensus 75 GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 104 (192)
|+.-.+-+.++|.-. ...+.+.-|.|+.
T Consensus 148 Glgs~l~e~l~d~yp--~~~~~~~~V~P~~ 175 (244)
T d2btoa1 148 GFGALLIESLKEKYG--EIPVLSCAVLPSP 175 (244)
T ss_dssp HHHHHHHHHHHHHTC--SSCEEEEEEECCC
T ss_pred chhhHHHHHHHHHhc--CceEEEEEEEecC
Confidence 999999999998543 2245667777774
No 10
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=49.80 E-value=3.9 Score=32.11 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred eCCCCHHHHHHHHHh--hhCCCCCCeEEEEecCCCCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCc
Q psy11223 8 SYDTRPENILQLFTR--EWSLELPKLLITVQGGKANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGT 72 (192)
Q Consensus 8 s~dt~p~~i~~l~~~--~W~l~~P~LVISV~GG~~~f~---------l~~~l~~~f~~GL~kaA~sTgaWIiT----gG~ 72 (192)
=-|++|.++-+++.. .|-+.+-+++..--|-..||. +...+.+.+|| .+..+++...-+++ |||
T Consensus 65 ~iD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk-~~E~cD~l~gf~~~hSl~GGT 143 (243)
T d1tubb1 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK-ESESCDCLQGFQLTHSLGGGT 143 (243)
T ss_dssp ECCSSSHHHHHHSSSSSCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHH-HHHSSSCEEEEEEECCTTCST
T ss_pred EecCCcchhhhhccCccccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHH-HHHhCCCcCceEEEeeccCcc
Confidence 358899999999875 455766665554444444554 22345566666 66667777777766 999
Q ss_pred ccchhhHHHHHhhhh
Q psy11223 73 NTGVTRQVGDALLME 87 (192)
Q Consensus 73 ~~GV~k~VG~Av~d~ 87 (192)
-+|+.-.+-+.++|.
T Consensus 144 GSGlGs~l~e~L~d~ 158 (243)
T d1tubb1 144 GSGMGTLLISKIREE 158 (243)
T ss_dssp TTTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhh
Confidence 999999999999985
No 11
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=41.36 E-value=9.7 Score=28.53 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=11.4
Q ss_pred CcEEEeCCcccchhhHHHHHhhh
Q psy11223 64 GAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 64 gaWIiTgG~~~GV~k~VG~Av~d 86 (192)
|++|||||+. ||.+.+.+.+.+
T Consensus 10 gt~lVTGgs~-GIG~a~a~~la~ 31 (259)
T d2fr1a1 10 GTVLVTGGTG-GVGGQIARWLAR 31 (259)
T ss_dssp SEEEEETTTS-HHHHHHHHHHHH
T ss_pred CEEEEECCCc-HHHHHHHHHHHH
Confidence 4555665543 555555555533
No 12
>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli [TaxId: 562]}
Probab=37.71 E-value=37 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 42 FELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 42 f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
..|.+.....+.+-+.+..+.....|||.|||+ |-+.+-++.-.
T Consensus 59 ~~~~~~~~~~l~~~i~~~~~~~dG~Vv~HGTDT--m~~tA~~L~~~ 102 (326)
T d1nnsa_ 59 QDMNDNVWLTLAKKINTDCDKTDGFVITHGTDT--MEETAYFLDLT 102 (326)
T ss_dssp GGCCHHHHHHHHHHHHHHGGGCSEEEEECCSSS--HHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhhccCCcEEEecCcCc--HHHHHHHHHHH
Confidence 345555555566656677788899999999999 99999998653
No 13
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=35.64 E-value=68 Score=22.92 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=37.5
Q ss_pred cceEEeeCCCCHHHHHHHHHhhhCCCCCC---eEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhc
Q psy11223 2 LQYVRLSYDTRPENILQLFTREWSLELPK---LLITVQGGKANFELQPKLKKVLRKGLLKAAKTT 63 (192)
Q Consensus 2 a~yiRls~dt~p~~i~~l~~~~W~l~~P~---LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sT 63 (192)
|.|+=+.-..+.+.+++.|.- =+..|+ +.|-+.||..+ -+.+-+|+++|.+..
T Consensus 46 ANFlDiGGga~~e~v~~al~i--il~d~~Vk~IlINIfGGI~r-------cD~vA~GIv~A~~e~ 101 (148)
T d1eucb1 46 ANFLDLGGGVKESQVYQAFKL--LTADPKVEAILVNIFGGIVN-------CAIIANGITKACREL 101 (148)
T ss_dssp SEEEECCSSCCHHHHHHHHHH--TTSCTTCCEEEEEEECSSSC-------HHHHHHHHHHHHHHH
T ss_pred eeEEecCCCCCHHHHHHHHHH--HHCCCCccEEEEEeeEeehh-------HHHHHHHHHHHHHhc
Confidence 567888888888888877743 244555 66778888775 456678888888764
No 14
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.61 E-value=14 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=20.0
Q ss_pred HHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhc
Q psy11223 17 LQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTT 63 (192)
Q Consensus 17 ~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sT 63 (192)
..+|.+.+++..|+ +++..|.+-..+.|+.|
T Consensus 2 AyiLe~~~Gi~LPr----------------~mq~efs~vVQ~~ad~s 32 (55)
T d1sr9a1 2 AYIMKTDHGLSLPR----------------RLQIEFSQVIQKIAEGT 32 (55)
T ss_dssp HHHHHHHHCCCCCH----------------HHHHHHHHHHHTC----
T ss_pred eEEeecccCCCCCH----------------HHHHHHHHHHHHHHHcc
Confidence 35667777776666 89999999666677765
No 15
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.42 E-value=33 Score=23.70 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 9 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 9 ~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
.+.+++++.+++.. .|.+||-=+|-...+.+++.+++.|++ -|...=+| -.++|++.+
T Consensus 46 ~~l~~~~l~~~l~~-----~peilliGtG~~~~~~l~~~~~~~l~~---------------~gi~ve~m-~T~~Acrty 103 (121)
T d2q4qa1 46 PGVQPADVKEVVEK-----GVQTLVIGRGMSEALKVPSSTVEYLKK---------------HGIDVRVL-QTEQAVKEY 103 (121)
T ss_dssp SCSCHHHHHHHHTT-----CCSEEEEECCSSCCSCCCHHHHHHHHT---------------TTCEEEEE-CHHHHHHHH
T ss_pred cccCHHHHHHHhcc-----CCCEEEEcCCCCcccCCCHHHHHHHHH---------------cCCceEEe-CHHHHHHHH
Confidence 34678888888854 699998888877788889898877766 23333343 567888765
No 16
>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae [TaxId: 666]}
Probab=32.05 E-value=43 Score=26.63 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy11223 42 FELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 86 (192)
Q Consensus 42 f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d 86 (192)
.+|.+.....+.+-+.++.+.-...|||-|||+ |-+.+-++..
T Consensus 60 ~~~~~~~w~~l~~~i~~~~~~~dGiVItHGTDT--leeTA~~L~~ 102 (336)
T d2ocda1 60 SDMTPADWQLIADDIAANYDKYDGFVILHGTDT--MAYTASALSF 102 (336)
T ss_dssp GGCCHHHHHHHHHHHHHTTTTCSEEEEECCSTT--HHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhhccCCCEEEEeCCch--HHHHHHHHHH
Confidence 345555555666645556666788999999999 9999988864
No 17
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=29.55 E-value=27 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 50 KVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 50 ~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
+.+++-|.++++..+.-|+|||+-.|=-=++-+++++.
T Consensus 54 ~~i~~~l~~~~~~~DivittGG~s~g~~D~~~~~l~~~ 91 (149)
T d2nqra3 54 HALRAAFIEADSQADVVISSGGVSVGEADYTKTILEEL 91 (149)
T ss_dssp HHHHHHHHHHHHHCSEEEECSSSCSSSCSHHHHHHHHH
T ss_pred HHHHHHHHhcccccCEEEEcCCccCCchHHHHHHHHHc
Confidence 44555566687888999999999999777788887653
No 18
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=27.62 E-value=34 Score=23.97 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy11223 49 KKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 49 ~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
.+.+++-+-++++.-+.-|+|||+-.|--=++-+++.+.
T Consensus 53 ~~~i~~~i~~~~~~~DliIttGG~s~g~~D~~~~~l~~~ 91 (148)
T d1uz5a3 53 KESLKALIEKAVNVGDVVVISGGASGGTKDLTASVIEEL 91 (148)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccEEEECCCcccchhhHHHHHHHHc
Confidence 444555555577778999999999888666666777653
No 19
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.57 E-value=73 Score=23.74 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCC-CCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANF-ELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT 74 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f-~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~ 74 (192)
.+++.+.+++.+.=+-..+.| |++..-...+ .+.+ + ++ |.+.|+..|+|++..+.+.
T Consensus 123 i~~~~l~~~i~~~~k~~~~~l-v~i~~~~n~tG~~~~-l----~~-I~~ia~~~~i~livD~a~~ 180 (364)
T d2e7ja1 123 ITPENFAQTIEETKKRGEVVL-ALITYPDGNYGNLPD-V----KK-IAKVCSEYDVPLLVNGAYA 180 (364)
T ss_dssp CCHHHHHHHHHHHTTTSCEEE-EEEESSCTTTCCCCC-H----HH-HHHHHHTTTCCEEEECTTT
T ss_pred cCHHHHHhhhhhhcccCCceE-EEeecCCCCCceeec-c----hh-heeccccccchhhccccch
Confidence 678999998877633222333 3333322211 2232 2 23 7788999999999999885
No 20
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.15 E-value=28 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=32.0
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchh
Q psy11223 27 ELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVT 77 (192)
Q Consensus 27 ~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~GV~ 77 (192)
..-+.+|-+=+|+..+..... +.+.|+.+|++++|.....|++
T Consensus 29 ~AkrPvii~G~g~~~~~a~~~--------l~~lae~~~~Pv~tt~~gkg~~ 71 (179)
T d1pvda1 29 DAKNPVILADACCSRHDVKAE--------TKKLIDLTQFPAFVTPMGKGSI 71 (179)
T ss_dssp HCSSEEEEECGGGTTTSTHHH--------HHHHHHHHCCCEEECGGGTTSS
T ss_pred hCCCCEEEEecccchhhhHHH--------HHHHHHhhCceEEecccccccc
Confidence 356667777778876654333 5668889999999998888775
No 21
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.80 E-value=46 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhh
Q psy11223 49 KKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALL 85 (192)
Q Consensus 49 ~~~f~~GL~kaA~sTgaWIiTgG~~~GV~k~VG~Av~ 85 (192)
.+.+++-|.+|++..+.-|+|||+-.|--=.+-+++.
T Consensus 53 ~~~i~~~l~~~~~~~DliittGG~s~g~~D~~~~~l~ 89 (155)
T d2ftsa3 53 PDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLD 89 (155)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESCCSSSCCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccCEEEEeccccCCcchhhHHHHH
Confidence 3444555666777789999999998886666667764
No 22
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=23.24 E-value=25 Score=25.31 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=22.2
Q ss_pred EEEeCCcccchhhHHHHHhhhhcccCCCceeEEee
Q psy11223 66 WVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGI 100 (192)
Q Consensus 66 WIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGI 100 (192)
-|||||.. |+.+.+.+.+.++. .+|+..++
T Consensus 4 alITGas~-GIG~aiA~~la~~G----a~V~i~~~ 33 (241)
T d1uaya_ 4 ALVTGGAS-GLGRAAALALKARG----YRVVVLDL 33 (241)
T ss_dssp EEEETTTS-HHHHHHHHHHHHHT----CEEEEEES
T ss_pred EEEeCCCC-HHHHHHHHHHHHCC----CEEEEEEC
Confidence 47999985 99999998887654 25666554
No 23
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.06 E-value=24 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.566 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEEecCCCC
Q psy11223 12 RPENILQLFTREWSLELPKLLITVQGGKAN 41 (192)
Q Consensus 12 ~p~~i~~l~~~~W~l~~P~LVISV~GG~~~ 41 (192)
+.+++.++..+.+ .+.+++|+|+|....
T Consensus 177 t~e~l~~f~~~~y--~~~n~~l~i~Gd~~~ 204 (232)
T d1ppja1 177 SRADLTEYLSRHY--KAPRMVLAAAGGLEH 204 (232)
T ss_dssp CHHHHHHHHHHHC--CGGGEEEEEEESCCH
T ss_pred hHHHHHHHHHHcC--CcCCEEEEEEeCCCH
Confidence 4555666554443 467788888887653
No 24
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=22.97 E-value=73 Score=20.21 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=33.8
Q ss_pred EEeeCCCCHHHHHHHHHhhhCCCCCCeEEEEecCCCC
Q psy11223 5 VRLSYDTRPENILQLFTREWSLELPKLLITVQGGKAN 41 (192)
Q Consensus 5 iRls~dt~p~~i~~l~~~~W~l~~P~LVISV~GG~~~ 41 (192)
.|++.+..-..+...+....++++.+.-+...|....
T Consensus 20 ~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~ 56 (90)
T d1t0ya_ 20 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQ 56 (90)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSS
T ss_pred EecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCC
Confidence 6899999999999999999999999999999987544
No 25
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=22.96 E-value=91 Score=25.02 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcC-cEEEeCCcccchhhHHHHHhhhh
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTG-AWVFTGGTNTGVTRQVGDALLME 87 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTg-aWIiTgG~~~GV~k~VG~Av~d~ 87 (192)
...+.+.+.+.+-..+ -++..--..-.....+.+.....+.+-+.++.++.. ..|||-|||+ |-+.+-++...
T Consensus 43 ~~~~~l~~~~p~~~~~--~~~~~~~~~~~dS~~~~~~~~~~l~~~i~~~~~~~d~G~VvtHGTDT--l~eTA~~L~~~ 116 (363)
T d1zq1a2 43 FTAEELAKALPEIFEV--ANVKPKLLFNIFSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDT--MGYTAAALSFM 116 (363)
T ss_dssp CCHHHHHHHCGGGGGT--SEEEEEECCCCCGGGCCHHHHHHHHHHHHHHHHTTCSEEEEECCSSS--HHHHHHHHHHH
T ss_pred CCHHHHHHhChhhhhc--ceeEEEEeccCCchhCCHHHHHHHHHHHHHhhcCCCCcEEEecCCCc--HHHHHHHHHHH
Confidence 3456666666443221 122222222233344555555555554555556555 5999999999 99999988753
No 26
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.67 E-value=27 Score=24.60 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCC
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKAN 41 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~ 41 (192)
.+++++.++..++ +.+-+++|+|+|....
T Consensus 167 i~~~~l~~f~~~~--y~p~n~~l~i~G~~~~ 195 (222)
T d1hr6b1 167 ITRTDLKDYITKN--YKGDRMVLAGAGAVDH 195 (222)
T ss_dssp CCHHHHHHHHHHH--CCGGGEEEEEEESCCH
T ss_pred hHHHHHHHHHHHh--cCccCEEEEEEcCCCH
Confidence 4667777777655 3467889999987654
No 27
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=21.37 E-value=75 Score=26.81 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc
Q psy11223 11 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT 74 (192)
Q Consensus 11 t~p~~i~~l~~~~W~l~~P~LVISV~GG~~~f~l~~~l~~~f~~GL~kaA~sTgaWIiTgG~~~ 74 (192)
+|-+.+.++..++ .|+|||. |++.+..+-.. ++ +.++|+.-||+++....|.
T Consensus 163 IDyd~~~~~a~~~----kPklIi~---G~S~y~r~~d~----~~-~reIad~vga~l~~D~aH~ 214 (463)
T d2a7va1 163 IDYNQLALTARLF----RPRLIIA---GTSAYARLIDY----AR-MREVCDEVKAHLLADMAHI 214 (463)
T ss_dssp BCHHHHHHHHHHH----CCSEEEE---CCSSCCSCCCH----HH-HHHHHHHTTCEEEEECGGG
T ss_pred CcHHHHHHHHhhc----CCceEEe---cccccccccCH----HH-HHHHhhcccceEEechhhh
Confidence 4777777777776 9999874 55555533221 22 5558899999999998887
Done!