RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11223
         (192 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.049
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 42/166 (25%)

Query: 1   MLQYVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAA 60
              Y+      R  N  Q+F         K  ++          + +    LR+ LL+  
Sbjct: 109 TRMYI--EQRDRLYNDNQVF--------AKYNVS----------RLQPYLKLRQALLELR 148

Query: 61  KTTGAWVFTGGTNTGVTRQVGDALLMERSQR--SGRV--VSIG--IAPWGIVE------- 107
                 +  G   +G T    D  L  + Q     ++  +++    +P  ++E       
Sbjct: 149 PAKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 108 ----NNHELIGHNKDVPY--HSISSPRSKFAVLNNRHAYFLLV-DN 146
               N      H+ ++    HSI +   +  + +  +   LLV  N
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLN 252


>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
           BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
           2hor_A* 1lk9_A*
          Length = 427

 Score = 27.6 bits (61), Expect = 3.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 3   QYVRLSYDTRPENILQLFTR 22
           +YVRLS     ++  QL   
Sbjct: 398 RYVRLSLIKTQDDFDQLMYY 417


>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
           2.10A {Streptococcus mutans}
          Length = 213

 Score = 27.2 bits (61), Expect = 3.3
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 13  PENILQLF----TREWSLELPKLLITVQGGKANFELQPKLKKVLRKGL 56
            E   +L     T E ++ L +  I    G  +F++  + K  L  GL
Sbjct: 141 KEVRDKLAKLKPTDEVTVNLFEQKIYSPVGDFSFDIDGEWKHKLLNGL 188


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 6.9
 Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 2/35 (5%)

Query: 39  KANFELQPKLKKVLRKGLLKAAKTTGAWVFT--GG 71
            A    +    K     L +A     A +    GG
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162



 Score = 26.2 bits (57), Expect = 9.2
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 44/139 (31%)

Query: 9    YDTRPE--NILQ---LFTRE---WSL-----ELPKLLITVQGGK------AN-----FEL 44
            Y T     ++        ++   +S+       P  L    GG+       N     FE 
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695

Query: 45   QPKLKKVLRKGLLKAAKTTGAWVFTGGTN----TGVTRQVGDALLMERSQRSGRVVSIGI 100
                K    K   +  + + ++ F         T  T Q   AL          ++    
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QP--ALT---------LMEKAA 1743

Query: 101  ----APWGIVENNHELIGH 115
                   G++  +    GH
Sbjct: 1744 FEDLKSKGLIPADATFAGH 1762


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0835    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,887,090
Number of extensions: 169945
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)