RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11223
         (192 letters)



>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 235

 Score = 25.0 bits (53), Expect = 6.1
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 66  WVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGI 105
               G    G     GD+     ++  G     GI  WG 
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGE 207


>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 125

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 129 SKFAVLNNRHAYFLLVDNGTAGKYGAEIILRRKLEKYISNQKLHPGKSKIVGAKGGEN 186
           ++  ++++  +   +   G  G  G EI   R+L   +++     G S I        
Sbjct: 17  TESRIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPA 74


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 24.7 bits (53), Expect = 8.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 3   QYVRLSYDTRPENILQLFTR 22
           +YVRLS     ++  QL   
Sbjct: 398 RYVRLSLIKTQDDFDQLMYY 417


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,719
Number of extensions: 30490
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 4
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)