BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11227
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 73/90 (81%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAIQ++P KK+TL+ IY F+ FPF+R QGW+NSIRHNLSLNECF+
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSF 116
K+P+ +PGKG YWT+DPDS MFE GSF
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 72/93 (77%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAI SP KKLTLS I F+ FP++R + W+NSIRHNLSLN+CF+
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRR 119
K+P+ G PGKG+YWT+DP S+ MF+ GSF RR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRR 94
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 69/89 (77%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAI SP KKLTLS I F+ FP++R + W+NSIRHNLSLN+CF+
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGS 115
K+P+ G PGKG+YWT+DP S+ MF+ GS
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 91
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAI+ S +LTL+EI +L FPFFRG Y GW+NS+RHNLSLN+CF+
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 87 KLPKALGRP-GKGHYWTVDPDSQLMFEEGSFRRR 119
K+ + RP GK +YW ++P+S+ F +G FRRR
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRR 95
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 115 bits (288), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYI+LI MAIQ +P K LTLSEIY ++ FP++R Q W+NSIRH+LS N+CF+
Sbjct: 3 KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRGKFKV 126
K+ ++ +PGKG YW + P S MFE G + RR + +FK+
Sbjct: 63 KVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKL 101
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSY LIV AI +P K+LTL+ IY+ + + +P++R +GW+NSIRHNLSLN F+
Sbjct: 16 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 75
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFR-RRPR 121
K+P++ PGKG +W +DP S+ E +FR RRPR
Sbjct: 76 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSY LIV AI +P K+LTL+ IY+ + + +P++R +GW+NSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFR-RRPR 121
K+P++ PGKG +W +DP S+ E +FR RRPR
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSY LIV AI S+ ++LTLS IY+ + + +P++R +GW+NSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFR-RRPRG 122
K+P++ PGKG +W +DP S+ E +FR RR RG
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQRG 99
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQ-GWKNSIRHNLSLNE 83
+E+PPYSY+A+I AI S+ K++TL +IY++++ FP+F+ + GWKNSIRHNLSL++
Sbjct: 16 SERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHD 75
Query: 84 CFLKLPKALGRPGKGHYWTVDPDSQ 108
F++ A GK +WT+ P +
Sbjct: 76 MFVRETSAN---GKVSFWTIHPSAN 97
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
+PP++Y LI AI S ++LTL+EIYS+ + F +FR WKN++RHNLSL++CF+
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 87 KLPKALGRPGKGHYWTVD 104
++ KG WTVD
Sbjct: 63 RVENV-----KGAVWTVD 75
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
+PP++Y +LI AI SP K+LTL+EIY++ + FP+FR WKN++RHNLSL++ F+
Sbjct: 4 RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFV 63
Query: 87 KLPKALGRPGKGHYWTVD 104
++ KG WTVD
Sbjct: 64 RVENV-----KGAVWTVD 76
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
+PP++Y LI AI +P K+ TL+EIY + + F FFR WKN+IRHNLSL++CF+
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFV 61
Query: 87 KLPKALGRPGKGHYWTVD 104
++ KG WTVD
Sbjct: 62 RVES-----EKGAVWTVD 74
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 21 CTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWKNSI 75
+RR SY LI AI+SSP K+LTLS+IY ++ + P+F+ GWKNSI
Sbjct: 3 SSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSI 62
Query: 76 RHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106
RHNLSL+ F+++ GK +W ++PD
Sbjct: 63 RHNLSLHSRFMRVQNEG--TGKSSWWIINPD 91
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWKNSIRHNLSLNECF 85
SY LI AI+SSP K+LTLS+IY ++ + P+F+ GWKNSIRHNLSL+ F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 86 LKLPKALGRPGKGHYWTVDPD 106
+++ GK +W ++PD
Sbjct: 65 MRVQNE--GTGKSSWWIINPD 83
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWK 72
K +RR SY LI AI+SS K+LTLS+IY ++ + P+F+ GWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Query: 73 NSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106
NSIRHNLSL+ F+++ GK +W ++P+
Sbjct: 62 NSIRHNLSLHSKFIRVQNE--GTGKSSWWMLNPE 93
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWK 72
K +RR SY LI AI+SS K+LTLS+IY ++ + P+F+ GWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Query: 73 NSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106
NSIRHNLSL+ F+++ GK +W ++P+
Sbjct: 62 NSIRHNLSLHSKFIRVQNE--GTGKSSWWMLNPE 93
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWK 72
+K +RR SY LI AI+S+P K+LTL++IY ++ + P+F+ GWK
Sbjct: 15 RKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWK 74
Query: 73 NSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106
NSIRHNLSL+ F+K+ GK +W ++P+
Sbjct: 75 NSIRHNLSLHSKFIKVHNEA--TGKSSWWMLNPE 106
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR-----GPYQGWK 72
+K +RR SY LI AI+S+P K+LTL++IY ++ + P+F+ GWK
Sbjct: 31 RKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWK 90
Query: 73 NSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106
NSIRHNLSL+ F+K+ GK +W ++P+
Sbjct: 91 NSIRHNLSLHSKFIKVHNEA--TGKSSWWMLNPE 122
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 47 KLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKAL-------GRPGK-- 97
K + E+++ L+Q + G Y+GW +++S +E FL P+ + G P K
Sbjct: 107 KAVVKELWTKLEQKGDIYLGRYEGW-----YSIS-DESFLT-PQNITDGVDKDGNPCKVS 159
Query: 98 ---GHYWTVDPDSQLMFEEGSFRRR 119
GH T + MF +FR R
Sbjct: 160 LESGHVVTWVSEENYMFRLSAFRER 184
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 47 KLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKAL-------GRPGK-- 97
K + E+++ L+Q + G Y+GW +++S +E FL P+ + G P K
Sbjct: 107 KAVVKELWTKLEQKGDIYLGRYEGW-----YSIS-DESFLT-PQNITDGVDKDGNPCKVS 159
Query: 98 ---GHYWTVDPDSQLMFEEGSFRRR 119
GH T + MF +FR R
Sbjct: 160 LESGHVVTWVSEENYMFRLSAFRER 184
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 47 KLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKAL-------GRPGK-- 97
K + E+++ L+Q + G Y+GW +++S +E FL P+ + G P K
Sbjct: 107 KAVVKELWTKLEQKGDIYLGRYEGW-----YSIS-DESFLT-PQNITDGVDKDGNPCKVS 159
Query: 98 ---GHYWTVDPDSQLMFEEGSFRRR 119
GH T + MF +FR R
Sbjct: 160 LESGHVVTWVSEENYMFRLSAFRER 184
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 26.2 bits (56), Expect = 7.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 36 IVMAIQSSPCKKLTLSEIYSFLQQGFP----FFRGPYQG---------WKNSIRHNLSLN 82
+V+ I +TL+E+ S +Q G P QG +++ H LN
Sbjct: 533 LVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLN 592
Query: 83 ECFLKLPKALGRPG 96
F+KL +A+G G
Sbjct: 593 PDFIKLAEAMGLKG 606
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 36 IVMAIQSSPCKKLTLSEIYSFLQQGFP----FFRGPYQG---------WKNSIRHNLSLN 82
+V+ I +TL+E+ S +Q G P QG +++ H LN
Sbjct: 486 LVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLN 545
Query: 83 ECFLKLPKALGRPG 96
F+KL +A+G G
Sbjct: 546 PDFIKLAEAMGLKG 559
>pdb|1X92|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase In Complex With Reaction Product D-glycero-d-
Mannopyranose-7-phosphate
pdb|1X92|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase In Complex With Reaction Product D-glycero-d-
Mannopyranose-7-phosphate
Length = 199
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 74 SIRHNLSLNECFLKLPKALGRPGK 97
SI ++ S NE F K +ALG+PG
Sbjct: 92 SIANDYSYNEVFSKQIRALGQPGD 115
>pdb|3BJZ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
Length = 199
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 74 SIRHNLSLNECFLKLPKALGRPGK 97
SI ++ S NE F K +ALG+PG
Sbjct: 92 SIANDYSYNEVFSKQIRALGQPGD 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,093,981
Number of Sequences: 62578
Number of extensions: 155008
Number of successful extensions: 267
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 26
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)