Query psy11227
Match_columns 148
No_of_seqs 113 out of 815
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:24:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00250 Fork_head: Fork head 100.0 1.2E-41 2.6E-46 244.7 3.6 96 27-122 1-96 (96)
2 cd00059 FH Forkhead (FH), also 100.0 1.7E-40 3.6E-45 231.0 7.4 78 27-104 1-78 (78)
3 smart00339 FH FORKHEAD. FORKHE 100.0 1.5E-39 3.3E-44 231.0 7.8 88 27-114 1-88 (89)
4 KOG3563|consensus 100.0 1.6E-37 3.5E-42 265.0 4.6 98 25-122 171-268 (454)
5 KOG3562|consensus 100.0 6E-36 1.3E-40 242.3 4.1 101 22-122 8-108 (277)
6 KOG2294|consensus 100.0 1.1E-36 2.4E-41 262.8 -0.9 100 23-122 126-228 (454)
7 KOG4385|consensus 99.9 6.3E-26 1.4E-30 199.4 0.2 104 25-140 366-469 (581)
8 COG5025 Transcription factor o 99.9 2.4E-22 5.3E-27 182.2 4.4 94 21-114 331-424 (610)
9 COG5025 Transcription factor o 99.6 7.6E-17 1.6E-21 146.6 -0.6 94 25-118 84-177 (610)
10 PF00538 Linker_histone: linke 95.3 0.021 4.5E-07 38.9 3.3 58 31-89 4-65 (77)
11 smart00526 H15 Domain in histo 95.1 0.051 1.1E-06 35.8 4.7 33 30-62 5-38 (66)
12 cd00073 H15 linker histone 1 a 94.0 0.11 2.3E-06 36.3 4.4 56 31-89 6-65 (88)
13 PF05066 HARE-HTH: HB1, ASXL, 84.6 0.67 1.4E-05 30.7 1.8 58 30-89 1-63 (72)
14 PF14338 Mrr_N: Mrr N-terminal 81.7 1.6 3.4E-05 30.4 2.8 76 31-111 1-88 (92)
15 KOG4012|consensus 81.0 1.9 4.1E-05 36.0 3.4 39 28-66 43-82 (243)
16 COG2958 Uncharacterized protei 67.3 7.6 0.00017 33.1 3.7 59 31-90 6-76 (307)
17 PF12872 OST-HTH: OST-HTH/LOTU 59.4 12 0.00025 24.3 2.9 56 31-87 5-63 (74)
18 PF10264 Stork_head: Winged he 50.6 27 0.00058 24.5 3.6 47 31-80 11-59 (80)
19 KOG1528|consensus 42.3 8.8 0.00019 33.4 0.1 31 77-107 109-140 (351)
20 PF08078 PsaX: PsaX family; I 41.2 21 0.00045 21.4 1.6 19 23-41 5-26 (37)
21 PRK09462 fur ferric uptake reg 38.4 50 0.0011 24.6 3.7 30 34-63 20-49 (148)
22 PF13808 DDE_Tnp_1_assoc: DDE_ 33.2 52 0.0011 22.7 2.9 48 18-65 7-54 (90)
23 COG0735 Fur Fe2+/Zn2+ uptake r 33.0 56 0.0012 24.6 3.2 29 35-64 25-53 (145)
24 PF10826 DUF2551: Protein of u 32.0 44 0.00095 23.6 2.3 20 44-63 22-41 (83)
25 COG5112 UFD2 U1-like Zn-finger 31.6 20 0.00044 26.7 0.6 29 78-106 34-62 (126)
26 PF13565 HTH_32: Homeodomain-l 28.7 1.1E+02 0.0024 19.6 3.8 27 34-62 37-63 (77)
27 cd05071 PTKc_Src Catalytic dom 28.3 61 0.0013 25.1 2.9 33 29-61 229-261 (262)
28 cd06649 PKc_MEK2 Catalytic dom 27.5 44 0.00095 27.3 2.0 48 32-84 277-327 (331)
29 PF06894 Phage_lambd_GpG: Bact 25.6 67 0.0015 24.2 2.5 31 33-63 58-95 (127)
30 smart00258 SAND SAND domain. 24.6 29 0.00063 23.9 0.3 13 67-79 48-60 (73)
31 cd07153 Fur_like Ferric uptake 23.7 1.3E+02 0.0028 20.9 3.6 27 35-62 5-31 (116)
32 PHA02988 hypothetical protein; 23.5 1.5E+02 0.0032 23.6 4.3 34 31-64 250-283 (283)
33 KOG0520|consensus 23.4 1.2E+02 0.0027 30.2 4.4 65 82-146 49-119 (975)
34 cd08229 STKc_Nek7 Catalytic do 23.0 1.1E+02 0.0024 23.4 3.5 30 31-60 236-265 (267)
35 PF13592 HTH_33: Winged helix- 22.7 68 0.0015 20.3 1.8 18 45-62 2-19 (60)
36 cd05061 PTKc_InsR Catalytic do 22.4 1.3E+02 0.0027 23.7 3.7 39 29-67 247-286 (288)
37 KOG0036|consensus 22.2 1.1E+02 0.0024 27.8 3.6 37 24-60 44-80 (463)
38 PF12317 IFT46_B_C: Intraflage 22.0 65 0.0014 26.5 1.9 61 49-109 16-79 (214)
39 PF11927 DUF3445: Protein of u 21.2 42 0.00091 27.7 0.7 33 43-75 40-80 (249)
40 cd05040 PTKc_Ack_like Catalyti 21.0 79 0.0017 24.1 2.2 30 29-58 227-256 (257)
41 PF09821 AAA_assoc_C: C-termin 20.7 1.9E+02 0.0042 21.2 4.1 33 30-62 63-95 (120)
42 PF06531 DUF1108: Protein of u 20.4 67 0.0015 22.8 1.5 11 50-60 62-72 (86)
43 cd05034 PTKc_Src_like Catalyti 20.0 1.3E+02 0.0027 23.0 3.2 29 31-59 232-260 (261)
No 1
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=100.00 E-value=1.2e-41 Score=244.72 Aligned_cols=96 Identities=59% Similarity=1.152 Sum_probs=89.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCCc
Q psy11227 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p~ 106 (148)
||||||++||++||++||+++|||+|||+||+.+||||+.+..+||||||||||+|+||+||++..+++|||++|+|+|+
T Consensus 1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~ 80 (96)
T PF00250_consen 1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE 80 (96)
T ss_dssp -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999998778999999999999
Q ss_pred hhhhhhcCcccccCCC
Q psy11227 107 SQLMFEEGSFRRRPRG 122 (148)
Q Consensus 107 ~~~~~~~~~~rrr~r~ 122 (148)
....++++.+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
T PF00250_consen 81 AIEEFEKGRFKRRRKR 96 (96)
T ss_dssp HHHHHHHSCCSSSSSS
T ss_pred HHHHHhcchhhhhhcc
Confidence 9999999999987653
No 2
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=100.00 E-value=1.7e-40 Score=231.00 Aligned_cols=78 Identities=67% Similarity=1.231 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD 104 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~ 104 (148)
|||+||++||++||+++|+++|||+|||+||+++||||+.++.|||||||||||+|+||+||+++.+++|||+||+||
T Consensus 1 kP~~sY~~LI~~Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~ 78 (78)
T cd00059 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD 78 (78)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence 799999999999999999999999999999999999999999999999999999999999999998889999999997
No 3
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=100.00 E-value=1.5e-39 Score=231.01 Aligned_cols=88 Identities=66% Similarity=1.236 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCCc
Q psy11227 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPD 106 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p~ 106 (148)
|||+||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++..+.+|||++|+|+|+
T Consensus 1 kP~~sY~~lI~~ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~ 80 (89)
T smart00339 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPD 80 (89)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhceeecCcCCCCCCCCCEEEECcc
Confidence 79999999999999999999999999999999999999999999999999999999999999998778899999999999
Q ss_pred hhhhhhcC
Q psy11227 107 SQLMFEEG 114 (148)
Q Consensus 107 ~~~~~~~~ 114 (148)
++..|+.+
T Consensus 81 ~~~~~~~~ 88 (89)
T smart00339 81 AENMFENG 88 (89)
T ss_pred HHHHHhcC
Confidence 98765543
No 4
>KOG3563|consensus
Probab=100.00 E-value=1.6e-37 Score=265.00 Aligned_cols=98 Identities=54% Similarity=1.043 Sum_probs=94.4
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227 25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD 104 (148)
Q Consensus 25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~ 104 (148)
+.||||||+.||.|||+.+|.++|||.|||+||++-|||||.+...|||||||.||.|+|||||+|.++.||||+||+|+
T Consensus 171 haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLH 250 (454)
T KOG3563|consen 171 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLH 250 (454)
T ss_pred CCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceeec
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCcccccCCC
Q psy11227 105 PDSQLMFEEGSFRRRPRG 122 (148)
Q Consensus 105 p~~~~~~~~~~~rrr~r~ 122 (148)
|++-.+||.|-.-||.++
T Consensus 251 pdsGNMFENGCYLRRQKR 268 (454)
T KOG3563|consen 251 PDSGNMFENGCYLRRQKR 268 (454)
T ss_pred CCcCcccccchhehhhhh
Confidence 999999999977776554
No 5
>KOG3562|consensus
Probab=100.00 E-value=6e-36 Score=242.29 Aligned_cols=101 Identities=55% Similarity=1.028 Sum_probs=95.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCccee
Q psy11227 22 TRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYW 101 (148)
Q Consensus 22 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W 101 (148)
+=..|||||||..|.+|||.+||+++|.|.|||.+|++.|||||.+...||||+|||||.|+||+||+|..+.+|||+||
T Consensus 8 sY~dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~drpGKGsyW 87 (277)
T KOG3562|consen 8 SYGDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDRPGKGSYW 87 (277)
T ss_pred cccccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCCCCCccce
Confidence 33578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhhcCcccccCCC
Q psy11227 102 TVDPDSQLMFEEGSFRRRPRG 122 (148)
Q Consensus 102 ~l~p~~~~~~~~~~~rrr~r~ 122 (148)
+|+|.+-++||.|++-||+++
T Consensus 88 alHP~a~dMFENGS~LRRrKR 108 (277)
T KOG3562|consen 88 ALHPSAFDMFENGSLLRRRKR 108 (277)
T ss_pred eeccchhhhcccchHHHHhhh
Confidence 999999999999998766543
No 6
>KOG2294|consensus
Probab=100.00 E-value=1.1e-36 Score=262.83 Aligned_cols=100 Identities=60% Similarity=1.131 Sum_probs=94.3
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHh-cCCCCCCCC-CCcccchhhhcccccceeeCccCCCCCCCcce
Q psy11227 23 RRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQ-GFPFFRGPY-QGWKNSIRHNLSLNECFLKLPKALGRPGKGHY 100 (148)
Q Consensus 23 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~-~fPyyr~~~-~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~ 100 (148)
+...||||||+.||+|||+.+++++|||.|||+||+. +||||++.. .|||||||||||+|+||+||+++.+.+|||+|
T Consensus 126 ~~~~kpp~SY~~LI~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~ 205 (454)
T KOG2294|consen 126 GAGVKPPYSYSGLIAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCFVKVPRERGRPGKGNY 205 (454)
T ss_pred CCCcCCccccccccccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCccccCCcccCCCCCCc
Confidence 4468999999999999999999999999999999995 999999999 99999999999999999999999888999999
Q ss_pred eEeCCchhh-hhhcCcccccCCC
Q psy11227 101 WTVDPDSQL-MFEEGSFRRRPRG 122 (148)
Q Consensus 101 W~l~p~~~~-~~~~~~~rrr~r~ 122 (148)
|+|||+++. +|+.|.|+||+|+
T Consensus 206 W~ldP~~~~~~~~~g~~~rr~~~ 228 (454)
T KOG2294|consen 206 WTLDPDDENNMFDNGSFRRRRRS 228 (454)
T ss_pred cccCcchhccccccccccccccc
Confidence 999999998 8898999887664
No 7
>KOG4385|consensus
Probab=99.91 E-value=6.3e-26 Score=199.39 Aligned_cols=104 Identities=39% Similarity=0.757 Sum_probs=90.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227 25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD 104 (148)
Q Consensus 25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~ 104 (148)
+.||||+|+.||.+||+.+|++.|||+|||.|+...|.|||.+...|||+||||||+|+||++|+.. ||.-|++|
T Consensus 366 dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnAVRHNLSLHKCF~RVEnv-----kgavwtvD 440 (581)
T KOG4385|consen 366 DVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENV-----KGAVWTVD 440 (581)
T ss_pred ccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHHHhhhhHHHHHHHHHHHH-----hcceeeee
Confidence 5699999999999999999999999999999999999999999999999999999999999999976 99999999
Q ss_pred CchhhhhhcCcccccCCCCCceeeecccccceeeec
Q psy11227 105 PDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYY 140 (148)
Q Consensus 105 p~~~~~~~~~~~rrr~r~~~~~~~~~~~~~~~~~~~ 140 (148)
... + .+||..+.+......|+|...-.|.
T Consensus 441 e~e-~------~krr~~k~~g~~sl~~n~~~~~~~~ 469 (581)
T KOG4385|consen 441 ERE-F------QKRRPQKITGSPSLIGNMATLLGNG 469 (581)
T ss_pred hhh-h------hhhcCccccCchhhhcccccccCCC
Confidence 643 2 3677777777666677766554443
No 8
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.85 E-value=2.4e-22 Score=182.17 Aligned_cols=94 Identities=45% Similarity=0.785 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcce
Q psy11227 21 CTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHY 100 (148)
Q Consensus 21 ~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~ 100 (148)
+..+..||+++|+.||..||+.++.++|+|.+||.||..+||||+....+|+||||||||+|++|.||++..+.+|||+|
T Consensus 331 ~~~~~~kP~~sya~~iT~ail~s~~~kmsls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf~kvP~sa~~pGKg~f 410 (610)
T COG5025 331 DVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGCF 410 (610)
T ss_pred ccccCccCCcchhhhhHHHhhcCcccccccccccccccccchhhccCCcccCchhhhhhhhccccccCCCCcCCCCCccc
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCCchhhhhhcC
Q psy11227 101 WTVDPDSQLMFEEG 114 (148)
Q Consensus 101 W~l~p~~~~~~~~~ 114 (148)
|.++++..+.++.-
T Consensus 411 w~i~~s~~~~~~sk 424 (610)
T COG5025 411 WKIDYSYIYEKESK 424 (610)
T ss_pred CccChhhhhhhccc
Confidence 99999887765443
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.60 E-value=7.6e-17 Score=146.59 Aligned_cols=94 Identities=40% Similarity=0.722 Sum_probs=87.1
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227 25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD 104 (148)
Q Consensus 25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~ 104 (148)
..+|||+|+.+|.++|+.++++.|||..||.||-..|+||.....+|+|||||||+++++|.++.+..+-.++|.||.+.
T Consensus 84 ~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~~ig 163 (610)
T COG5025 84 YYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIG 163 (610)
T ss_pred cccCCeeeeeccccccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCceEEEEeccCCccccceeeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CchhhhhhcCcccc
Q psy11227 105 PDSQLMFEEGSFRR 118 (148)
Q Consensus 105 p~~~~~~~~~~~rr 118 (148)
|+.+..|.....++
T Consensus 164 P~~~~~~l~~g~~~ 177 (610)
T COG5025 164 PGHETQFLKSGLRL 177 (610)
T ss_pred CCccceeecccccc
Confidence 99887765554443
No 10
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=95.32 E-value=0.021 Score=38.87 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=40.1
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhccc---ccceeeCc
Q psy11227 31 SYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSL---NECFLKLP 89 (148)
Q Consensus 31 SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~---~~~F~Kv~ 89 (148)
+|..||..||.+..+ +..++..|..||+.+|+.-. ....-+..++..|-. +..|+++.
T Consensus 4 ~y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~~~-~~~~~~~~l~~aLk~~v~~G~l~~~k 65 (77)
T PF00538_consen 4 PYSDMILEAIKALKERKGSSLQAIKKYIKAKYKVDL-NPANFKSRLKRALKRGVEKGKLVQVK 65 (77)
T ss_dssp CHHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSCCC-CHTTHHHHHHHHHHHHHHCTSEEECS
T ss_pred CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCcCC-ChHHHHHHHHHHHHHHHHCCcEEeec
Confidence 589999999987544 78999999999999997411 112344455555422 55666654
No 11
>smart00526 H15 Domain in histone families 1 and 5.
Probab=95.14 E-value=0.051 Score=35.76 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCC
Q psy11227 30 YSYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 30 ~SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fP 62 (148)
.+|..||..||.+..+ +..++..|..||+.+|+
T Consensus 5 P~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~ 38 (66)
T smart00526 5 PPYSEMITEAISALKERKGSSLQAIKKYIEANYK 38 (66)
T ss_pred CCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 3899999999987555 66899999999999966
No 12
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=94.02 E-value=0.11 Score=36.34 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcc---cccceeeCc
Q psy11227 31 SYIALIVMAIQS-SPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLS---LNECFLKLP 89 (148)
Q Consensus 31 SYa~LI~~AI~~-sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS---~~~~F~Kv~ 89 (148)
+|..||..||.+ .+.+..++..|..||+.+|+.-. .....-++..|- .+..|+++.
T Consensus 6 ~y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~~~---~~~~~~l~~aLkk~v~~G~l~~~k 65 (88)
T cd00073 6 PYSEMVTEAIKALKERKGSSLQAIKKYIEAKYKVDD---ENFNKLLKLALKKGVAKGKLVQVK 65 (88)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCcch---HHHHHHHHHHHHHHHHCCCeEeec
Confidence 789999999976 34467899999999999988533 333334444442 245666654
No 13
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=84.63 E-value=0.67 Score=30.74 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcc-----cccceeeCc
Q psy11227 30 YSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLS-----LNECFLKLP 89 (148)
Q Consensus 30 ~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS-----~~~~F~Kv~ 89 (148)
+|+..++...|.... +.|+.+||++.|++.--| ...+....++|+-.|. .+..|++|.
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~-~~~~k~p~~~i~a~ly~~~~~~d~~F~~vg 63 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLY-KKSGKTPEATIAAQLYTDIKNEDSRFVKVG 63 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESS
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCC-CcccCCHHHHHHHHHHHHcccCCCCEEEeC
Confidence 477888888888776 899999999999977654 3335667778874443 445899984
No 14
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=81.74 E-value=1.6 Score=30.36 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=49.3
Q ss_pred CHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCC--------CCCC--CCcccchhhhcccccceeeCccCCCCCCCc
Q psy11227 31 SYIALIVMAIQS--SPCKKLTLSEIYSFLQQGFPFF--------RGPY--QGWKNSIRHNLSLNECFLKLPKALGRPGKG 98 (148)
Q Consensus 31 SYa~LI~~AI~~--sp~~~LtL~eIy~~I~~~fPyy--------r~~~--~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG 98 (148)
+|..|+...|.. .-.+.++.+||++.|.+.|..= .+.. .-|+|.|+=.++.-.+.--|.+ +++|
T Consensus 1 ~~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~----~~rG 76 (92)
T PF14338_consen 1 TYDELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIER----PKRG 76 (92)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccC----CCCC
Confidence 455666555543 3348999999999999998753 1222 2699999977765444433433 2344
Q ss_pred ceeEeCCchhhhh
Q psy11227 99 HYWTVDPDSQLMF 111 (148)
Q Consensus 99 ~~W~l~p~~~~~~ 111 (148)
.|.|.+......
T Consensus 77 -~~~iT~~G~~~l 88 (92)
T PF14338_consen 77 -IWRITEKGRKAL 88 (92)
T ss_pred -ceEECHhHHHHH
Confidence 999998765443
No 15
>KOG4012|consensus
Probab=81.02 E-value=1.9 Score=36.03 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCC
Q psy11227 28 PPYSYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFPFFRG 66 (148)
Q Consensus 28 Pp~SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fPyyr~ 66 (148)
+.-+|..||..||..+.+ ...++.-|+.+|..+|+.|.-
T Consensus 43 ~~P~~~~mi~eAi~a~keR~GsS~aAikK~i~~~Y~g~~v 82 (243)
T KOG4012|consen 43 AHPPYSEMITEAISALKERKGSSLAAIKKYIAANYPGDDV 82 (243)
T ss_pred CCCcHHHHHHHHHHHhhhcccchHHHHHHHHhhcCccchh
Confidence 445789999999988655 578999999999999987653
No 16
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.33 E-value=7.6 Score=33.14 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=41.2
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC------CCCCCCCc------ccchhhhcccccceeeCcc
Q psy11227 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPF------FRGPYQGW------KNSIRHNLSLNECFLKLPK 90 (148)
Q Consensus 31 SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPy------yr~~~~gW------knSIRHnLS~~~~F~Kv~r 90 (148)
++..+|-..|+. ++..+|.+|||+|+...||- |.+.+..= --+.|-||-.+.-|.||..
T Consensus 6 ~~~e~vl~~Lq~-~~ep~t~~eI~eka~e~~~~~~~~kk~~s~g~tp~q~va~~iy~~~~lq~~~pflKvte 76 (307)
T COG2958 6 NLIEIVLSVLQT-SEEPFTAREIAEKAFETFPAECQEKKFDSGGDTPQQLVAEIIYTRPNLQEKHPFLKVTE 76 (307)
T ss_pred hhHHHHHHHHHc-cCCCCcHHHHHHHHHHhccHHHHHHhhccccccHHHHHHHHHhcCccccccCccccccc
Confidence 455666555555 77999999999999999984 22222222 2355677888888999875
No 17
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=59.42 E-value=12 Score=24.27 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCC--CCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhc-ccccceee
Q psy11227 31 SYIALIVMAIQSSP--CKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNL-SLNECFLK 87 (148)
Q Consensus 31 SYa~LI~~AI~~sp--~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnL-S~~~~F~K 87 (148)
....+|..+|.+.+ ++.+.+.++..++...||-|....-|.. +++.-| ++...|+=
T Consensus 5 ~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~-~l~~ll~~~~~~~~i 63 (74)
T PF12872_consen 5 ELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS-SLSELLESLPDVVEI 63 (74)
T ss_dssp HHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS-SHHHHHHT-TTTEEE
T ss_pred HHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC-cHHHHHHhCCCeEEE
Confidence 34577888885544 3579999999999999988875554443 455555 44555443
No 18
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=50.63 E-value=27 Score=24.47 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=35.0
Q ss_pred CHHHHHHHHHh--cCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcc
Q psy11227 31 SYIALIVMAIQ--SSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLS 80 (148)
Q Consensus 31 SYa~LI~~AI~--~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS 80 (148)
.-++.|+.||. ++.....|+..|.+++.++||--..-+ ...|++.|.
T Consensus 11 PL~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~~Ps---~e~l~~~L~ 59 (80)
T PF10264_consen 11 PLPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIAIPS---QEVLYNTLG 59 (80)
T ss_pred eHHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCCCC---HHHHHHHHH
Confidence 45678888984 678889999999999999999654322 335666654
No 19
>KOG1528|consensus
Probab=42.30 E-value=8.8 Score=33.43 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.6
Q ss_pred hhcccccceeeCccCCCCCC-CcceeEeCCch
Q psy11227 77 HNLSLNECFLKLPKALGRPG-KGHYWTVDPDS 107 (148)
Q Consensus 77 HnLS~~~~F~Kv~r~~~~~G-KG~~W~l~p~~ 107 (148)
.-||..+...-+.+...+.| ||.+|.|||-.
T Consensus 109 ~~ls~~dvl~aID~G~s~GG~kGrhWvLDPID 140 (351)
T KOG1528|consen 109 SPLSSDDVLKAIDRGNSEGGPKGRHWVLDPID 140 (351)
T ss_pred CCCCHHHHHHHHhcccccCCCCCceEEeccCC
Confidence 34677777777777655544 89999999964
No 20
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=41.20 E-value=21 Score=21.41 Aligned_cols=19 Identities=42% Similarity=0.973 Sum_probs=6.9
Q ss_pred CCCCCCCCCH---HHHHHHHHh
Q psy11227 23 RRAEKPPYSY---IALIVMAIQ 41 (148)
Q Consensus 23 ~~~~KPp~SY---a~LI~~AI~ 41 (148)
++..||||.| ..|+-+||.
T Consensus 5 ~k~akp~Y~frt~Wa~llLaIN 26 (37)
T PF08078_consen 5 NKTAKPPYTFRTGWALLLLAIN 26 (37)
T ss_dssp ---------HHHHHHHHHHHHH
T ss_pred cCCCCCCeehhHHHHHHHHHHH
Confidence 3467999999 667777764
No 21
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.44 E-value=50 Score=24.58 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy11227 34 ALIVMAIQSSPCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 34 ~LI~~AI~~sp~~~LtL~eIy~~I~~~fPy 63 (148)
..|..+|.+++.+-+|..|||+.+....|-
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~ 49 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEE 49 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC
Confidence 456666776666789999999999988874
No 22
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=33.16 E-value=52 Score=22.72 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCC
Q psy11227 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFR 65 (148)
Q Consensus 18 ~~~~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr 65 (148)
.-++.|...+=.|+.+.|+..++.+.-.|.-+..+|-+|...+-++++
T Consensus 7 ~i~DpR~~~~~ry~L~~iL~i~~~a~l~G~~~~~~i~~~~~~~~~~l~ 54 (90)
T PF13808_consen 7 QIPDPRSRRGRRYPLADILLIALCAVLCGADSWREIAEWARAHEEWLR 54 (90)
T ss_pred CCCCCcccCCceecHHHHHHHHHHHHHHccccHHHHHHHHHHhHHHHH
Confidence 445666666788999999999998888899999999999998887654
No 23
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.97 E-value=56 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCC
Q psy11227 35 LIVMAIQSSPCKKLTLSEIYSFLQQGFPFF 64 (148)
Q Consensus 35 LI~~AI~~sp~~~LtL~eIy~~I~~~fPyy 64 (148)
.|...|..+++. +|..|||+.+.+.+|--
T Consensus 25 ~vl~~L~~~~~~-~sAeei~~~l~~~~p~i 53 (145)
T COG0735 25 AVLELLLEADGH-LSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHhCCCC
Confidence 344555556555 99999999999998843
No 24
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=32.04 E-value=44 Score=23.63 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHhcCCC
Q psy11227 44 PCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 44 p~~~LtL~eIy~~I~~~fPy 63 (148)
..+.+|..|||+.+.+.|.-
T Consensus 22 ~~~~~T~~di~e~L~~~f~v 41 (83)
T PF10826_consen 22 KGKKFTTDDIYERLKEKFDV 41 (83)
T ss_pred hCCCeeHHHHHHHHHHHcCc
Confidence 45899999999999999763
No 25
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=31.58 E-value=20 Score=26.72 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=24.6
Q ss_pred hcccccceeeCccCCCCCCCcceeEeCCc
Q psy11227 78 NLSLNECFLKLPKALGRPGKGHYWTVDPD 106 (148)
Q Consensus 78 nLS~~~~F~Kv~r~~~~~GKG~~W~l~p~ 106 (148)
-||....|.|+|-+++.||-|.++.+.=+
T Consensus 34 Dls~~Es~~Klp~Dp~lPGlGqhYCieCa 62 (126)
T COG5112 34 DLSTKESQKKLPYDPELPGLGQHYCIECA 62 (126)
T ss_pred hcchhhhhccCCCCCCCCCCceeeeehhH
Confidence 36678899999999999999999998743
No 26
>PF13565 HTH_32: Homeodomain-like domain
Probab=28.73 E-value=1.1e+02 Score=19.62 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy11227 34 ALIVMAIQSSPCKKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 34 ~LI~~AI~~sp~~~LtL~eIy~~I~~~fP 62 (148)
..|...+...| .+|+.+|.++|+..|.
T Consensus 37 ~~i~~~~~~~p--~wt~~~i~~~L~~~~g 63 (77)
T PF13565_consen 37 ERIIALIEEHP--RWTPREIAEYLEEEFG 63 (77)
T ss_pred HHHHHHHHhCC--CCCHHHHHHHHHHHhC
Confidence 45555556555 8999999999999876
No 27
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=28.33 E-value=61 Score=25.14 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcC
Q psy11227 29 PYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGF 61 (148)
Q Consensus 29 p~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~f 61 (148)
|-....||...+.-.|+.+.|..+|.+++++-|
T Consensus 229 ~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~ 261 (262)
T cd05071 229 PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 261 (262)
T ss_pred CHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence 345778999999999999999999999998765
No 28
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=27.54 E-value=44 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCC---CCCcccchhhhcccccc
Q psy11227 32 YIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGP---YQGWKNSIRHNLSLNEC 84 (148)
Q Consensus 32 Ya~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~---~~gWknSIRHnLS~~~~ 84 (148)
+..||...+.-.|+.+.|+.||.+ .|||+.. ...|++.+..+|+++.-
T Consensus 277 l~~li~~~L~~~P~~Rpt~~ell~-----h~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
T cd06649 277 FQEFVNKCLIKNPAERADLKMLMN-----HTFIKRSEVEEVDFAGWLCKTLRLNQP 327 (331)
T ss_pred HHHHHHHHccCCcccCCCHHHHhc-----ChHHhhcccccccHHHHHHHhhccccc
Confidence 578999999999999999999974 4777643 36788888888887643
No 29
>PF06894 Phage_lambd_GpG: Bacteriophage lambda minor tail protein (GpG); InterPro: IPR010027 This entry is represented by Bacteriophage lambda, GpG, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C terminus of protein G from phage lambda, with about 4% efficiency, to produce tail assembly protein G-T.
Probab=25.62 E-value=67 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHhcC-------CCCCCCHHHHHHHHHhcCCC
Q psy11227 33 IALIVMAIQSS-------PCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 33 a~LI~~AI~~s-------p~~~LtL~eIy~~I~~~fPy 63 (148)
+-||++.|-.+ ++..=.+.+|++-|+..||+
T Consensus 58 A~LVA~SLwh~h~~k~~~~~~~~~v~~lq~eVm~tWp~ 95 (127)
T PF06894_consen 58 AWLVAMSLWHSHPQKGEYPDPEEDVEELQQEVMSTWPP 95 (127)
T ss_pred HHHHHHHHHhcchhhcccCchhHHHHHHHHHHHHhCCH
Confidence 55788888766 45666899999999999996
No 30
>smart00258 SAND SAND domain.
Probab=24.62 E-value=29 Score=23.87 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.8
Q ss_pred CCCCcccchhhhc
Q psy11227 67 PYQGWKNSIRHNL 79 (148)
Q Consensus 67 ~~~gWknSIRHnL 79 (148)
....||-|||++=
T Consensus 48 ~~K~WK~sIR~~g 60 (73)
T smart00258 48 KSKDWKRSIRCGG 60 (73)
T ss_pred ccCCcchheeECC
Confidence 4588999999984
No 31
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.66 E-value=1.3e+02 Score=20.88 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy11227 35 LIVMAIQSSPCKKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 35 LI~~AI~~sp~~~LtL~eIy~~I~~~fP 62 (148)
.|..+|..+ ++-+|..|||+.+....|
T Consensus 5 ~Il~~l~~~-~~~~sa~ei~~~l~~~~~ 31 (116)
T cd07153 5 AILEVLLES-DGHLTAEEIYERLRKKGP 31 (116)
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHhcCC
Confidence 456666665 577999999999998766
No 32
>PHA02988 hypothetical protein; Provisional
Probab=23.48 E-value=1.5e+02 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCC
Q psy11227 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFF 64 (148)
Q Consensus 31 SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyy 64 (148)
....||...+...|+.+.|..||.+.+..-+-||
T Consensus 250 ~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~~~ 283 (283)
T PHA02988 250 EIKCIVEACTSHDSIKRPNIKEILYNLSLYKFYI 283 (283)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHHHHHHHHHhcC
Confidence 4778899999999999999999999988766554
No 33
>KOG0520|consensus
Probab=23.40 E-value=1.2e+02 Score=30.17 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=43.1
Q ss_pred ccceeeCccCCCCCCCcceeEeCCchhh--hhhcCcccccCCCCCceee----ecccccceeeeccccCCC
Q psy11227 82 NECFLKLPKALGRPGKGHYWTVDPDSQL--MFEEGSFRRRPRGKFKVEV----QLGTMGIFITYYLHSQTE 146 (148)
Q Consensus 82 ~~~F~Kv~r~~~~~GKG~~W~l~p~~~~--~~~~~~~rrr~r~~~~~~~----~~~~~~~~~~~~~~~~~~ 146 (148)
+.+|......+.+|-.|+.-..|--... --+++.+|+|+.|+.-.++ +.|.+-..+.||.|.|.-
T Consensus 49 ~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~WkKkkDGKtirEaHe~LKvg~~~~l~~~Y~Hg~~~ 119 (975)
T KOG0520|consen 49 HEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHNWKKKKDGKTIREAHEKLKVGGVEVLHCYYAHGEIN 119 (975)
T ss_pred ccccccccCCCCCCCCCceeeeccHHHHHHhhcchhhhhcCCCCcChHHHHhhccCCccceeeeeeccccc
Confidence 4444433344445666777766644332 2355677888888876655 779999999999998764
No 34
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=22.99 E-value=1.1e+02 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy11227 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQG 60 (148)
Q Consensus 31 SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~ 60 (148)
....||...+...|.++.|+.+||+-+.+-
T Consensus 236 ~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 236 ELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 356778877888999999999999988754
No 35
>PF13592 HTH_33: Winged helix-turn helix
Probab=22.67 E-value=68 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHhcCC
Q psy11227 45 CKKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 45 ~~~LtL~eIy~~I~~~fP 62 (148)
.+..|+.+|.+||+..|-
T Consensus 2 ~~~wt~~~i~~~I~~~fg 19 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFG 19 (60)
T ss_pred CCcccHHHHHHHHHHHHC
Confidence 356788999999998876
No 36
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=22.41 E-value=1.3e+02 Score=23.72 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHh-cCCCCCCC
Q psy11227 29 PYSYIALIVMAIQSSPCKKLTLSEIYSFLQQ-GFPFFRGP 67 (148)
Q Consensus 29 p~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~-~fPyyr~~ 67 (148)
+-....+|...|.-.|+.+.|+.||.+.+.+ ..|.|+..
T Consensus 247 ~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~ 286 (288)
T cd05061 247 PERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEV 286 (288)
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCC
Confidence 3457788999999999999999999998886 46676654
No 37
>KOG0036|consensus
Probab=22.17 E-value=1.1e+02 Score=27.84 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy11227 24 RAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQG 60 (148)
Q Consensus 24 ~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~ 60 (148)
..++|++.|+.+|..++....++++.+.|.-.++..+
T Consensus 44 ~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 44 DHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred CCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 3448999999999999999999999999998888755
No 38
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=22.02 E-value=65 Score=26.54 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCcccchhh---hcccccceeeCccCCCCCCCcceeEeCCchhh
Q psy11227 49 TLSEIYSFLQQGFPFFRGPYQGWKNSIRH---NLSLNECFLKLPKALGRPGKGHYWTVDPDSQL 109 (148)
Q Consensus 49 tL~eIy~~I~~~fPyyr~~~~gWknSIRH---nLS~~~~F~Kv~r~~~~~GKG~~W~l~p~~~~ 109 (148)
-++|++++|..=-|-=-.-+...|-=|-- .+.-=++|.||+|+.+.+-.-+++.||+-+..
T Consensus 16 EikeLF~yI~~YtPq~iel~~kLkPFiPdyiPAVGdiDaFiKVpRPD~~~d~LGL~vLDEP~~~ 79 (214)
T PF12317_consen 16 EIKELFQYITRYTPQEIELDTKLKPFIPDYIPAVGDIDAFIKVPRPDGKPDNLGLTVLDEPSAN 79 (214)
T ss_pred HHHHHHHHHhhcCCccccCCCcccccCccccccccCcccceeccCCCCCccccCCEEecCCCcc
Confidence 46788888886333111111122211111 11224799999999888878889999987643
No 39
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=21.18 E-value=42 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHh----cCC-CCCCCCCC---cccch
Q psy11227 43 SPCKKLTLSEIYSFLQQ----GFP-FFRGPYQG---WKNSI 75 (148)
Q Consensus 43 sp~~~LtL~eIy~~I~~----~fP-yyr~~~~g---WknSI 75 (148)
.|+...-..|+|+++.. .|| +|.....+ |.|.+
T Consensus 40 ~p~~~~A~~Ell~~v~~~L~~ryP~~F~~~~~~~~~~~n~~ 80 (249)
T PF11927_consen 40 LPGSEAAVWELLELVLDYLPARYPQYFSLDGDGDRWWHNRL 80 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCchheEEcCCCceeEEecc
Confidence 45555566777777665 888 67655444 55554
No 40
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=21.05 E-value=79 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q psy11227 29 PYSYIALIVMAIQSSPCKKLTLSEIYSFLQ 58 (148)
Q Consensus 29 p~SYa~LI~~AI~~sp~~~LtL~eIy~~I~ 58 (148)
|-....||...+...|..+.++.||++.+.
T Consensus 227 ~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 227 PQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 346777888888999999999999999875
No 41
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=20.67 E-value=1.9e+02 Score=21.24 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy11227 30 YSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 30 ~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fP 62 (148)
.++...|..++.+.+.+++.-..+.+.++..||
T Consensus 63 ~Pl~~~I~~~L~~~~~~~~~~~~~~~~L~~~~~ 95 (120)
T PF09821_consen 63 VPLAAHIRRVLRERPNHRLPEERFLDELEDHFS 95 (120)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCC
Confidence 568899999999999999999999999999886
No 42
>PF06531 DUF1108: Protein of unknown function (DUF1108); InterPro: IPR009494 This entry is represented by Bacteriophage 92, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.
Probab=20.40 E-value=67 Score=22.81 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=9.0
Q ss_pred HHHHHHHHHhc
Q psy11227 50 LSEIYSFLQQG 60 (148)
Q Consensus 50 L~eIy~~I~~~ 60 (148)
.+.||+||+++
T Consensus 62 ~~aiyewIE~n 72 (86)
T PF06531_consen 62 NQAIYEWIEEN 72 (86)
T ss_pred HHHHHHHHHhC
Confidence 46799999976
No 43
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=20.00 E-value=1.3e+02 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q psy11227 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQ 59 (148)
Q Consensus 31 SYa~LI~~AI~~sp~~~LtL~eIy~~I~~ 59 (148)
....+|...|...|.++.+..||++.++.
T Consensus 232 ~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 232 ELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 57778888899999999999999998863
Done!