Query psy11227
Match_columns 148
No_of_seqs 113 out of 815
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:25:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 9.4E-47 3.2E-51 273.2 5.7 99 25-123 1-99 (102)
2 2hdc_A Protein (transcription 100.0 4.8E-47 1.7E-51 272.5 4.0 97 26-122 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 9.8E-47 3.4E-51 272.2 5.2 97 26-122 1-98 (100)
4 2c6y_A Forkhead box protein K2 100.0 2.8E-46 9.4E-51 274.3 5.1 100 22-121 11-110 (111)
5 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 3.1E-46 1.1E-50 273.2 4.4 99 26-124 2-100 (109)
6 3coa_C Forkhead box protein O1 100.0 4.3E-42 1.5E-46 254.0 5.2 89 18-108 2-95 (117)
7 3l2c_A Forkhead box protein O4 100.0 2.4E-41 8.3E-46 247.7 5.4 92 16-109 13-109 (110)
8 3bpy_A FORK head domain, forkh 100.0 5.2E-41 1.8E-45 235.9 5.4 80 23-104 1-85 (85)
9 1e17_A AFX; DNA binding domain 100.0 5.3E-41 1.8E-45 257.1 2.5 104 14-122 27-135 (150)
10 2a07_F Forkhead box protein P2 100.0 2.5E-40 8.7E-45 235.9 -0.1 77 26-107 2-78 (93)
11 3g73_A Forkhead box protein M1 100.0 3.2E-39 1.1E-43 245.6 3.6 104 21-127 12-117 (142)
12 1uhm_A Histone H1, histone HHO 92.0 0.14 4.7E-06 34.2 3.4 56 31-88 6-66 (78)
13 1uss_A Histone H1; DNA binding 91.9 0.2 6.7E-06 34.3 4.2 59 31-89 9-71 (88)
14 2rqp_A Heterochromatin protein 91.3 0.17 5.9E-06 34.4 3.4 34 30-63 10-44 (88)
15 1hst_A Histone H5; chromosomal 90.6 0.24 8.2E-06 34.1 3.6 68 31-106 9-80 (90)
16 1ust_A Histone H1; DNA binding 89.2 0.26 8.9E-06 34.1 2.9 34 30-63 8-42 (93)
17 2lso_A Histone H1X; structural 81.6 0.33 1.1E-05 32.9 0.0 34 29-62 5-39 (83)
18 1ghc_A GH1; chromosomal protei 64.0 1.2 4.2E-05 29.0 -0.3 30 31-60 5-35 (75)
19 2kpm_A Uncharacterized protein 58.4 36 0.0012 23.8 6.6 64 27-91 17-83 (105)
20 3rsn_A SET1/ASH2 histone methy 54.2 16 0.00054 28.0 4.4 64 27-90 66-145 (177)
21 4aw0_A HPDK1, 3-phosphoinositi 46.1 7.2 0.00025 31.7 1.4 39 32-73 261-301 (311)
22 2kzv_A Uncharacterized protein 43.7 49 0.0017 22.4 5.1 60 27-87 4-65 (92)
23 1jb0_X Photosystem I subunit P 36.6 24 0.00083 20.1 2.2 18 24-41 3-23 (35)
24 1mzb_A Ferric uptake regulatio 33.4 49 0.0017 23.1 4.0 30 34-63 21-50 (136)
25 3hyh_A Carbon catabolite-derep 28.8 30 0.001 27.3 2.4 32 32-63 239-272 (275)
26 2fu4_A Ferric uptake regulatio 28.3 43 0.0015 20.9 2.7 41 35-81 21-61 (83)
27 3u1d_A Uncharacterized protein 23.6 74 0.0025 23.5 3.6 68 36-113 34-107 (151)
28 4hgt_A Casein kinase I isoform 21.7 1E+02 0.0034 22.8 4.1 34 29-62 247-280 (296)
29 3mwm_A ZUR, putative metal upt 20.9 75 0.0026 22.3 3.1 28 35-63 18-45 (139)
30 2w57_A Ferric uptake regulatio 20.8 54 0.0018 23.4 2.3 30 34-63 20-49 (150)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=9.4e-47 Score=273.16 Aligned_cols=99 Identities=53% Similarity=1.004 Sum_probs=94.9
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeC
Q psy11227 25 AEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVD 104 (148)
Q Consensus 25 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~ 104 (148)
++||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CchhhhhhcCcccccCCCC
Q psy11227 105 PDSQLMFEEGSFRRRPRGK 123 (148)
Q Consensus 105 p~~~~~~~~~~~rrr~r~~ 123 (148)
|+++.+|++|.++||+++.
T Consensus 81 p~~~~~f~~g~~~rr~~~~ 99 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRF 99 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCC
T ss_pred cCHHHHhhcCCeecccccc
Confidence 9999999999998887663
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.8e-47 Score=272.48 Aligned_cols=97 Identities=61% Similarity=1.140 Sum_probs=93.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCC
Q psy11227 26 EKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDP 105 (148)
Q Consensus 26 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p 105 (148)
.||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+++.+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 48999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred chhhhhhcCcccccCCC
Q psy11227 106 DSQLMFEEGSFRRRPRG 122 (148)
Q Consensus 106 ~~~~~~~~~~~rrr~r~ 122 (148)
+++.+|++|.++||+++
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999877653
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=9.8e-47 Score=272.20 Aligned_cols=97 Identities=57% Similarity=1.095 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCC-CCcceeEeC
Q psy11227 26 EKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRP-GKGHYWTVD 104 (148)
Q Consensus 26 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~-GKG~~W~l~ 104 (148)
+||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+++.+++ |||+||+||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999999999988887 999999999
Q ss_pred CchhhhhhcCcccccCCC
Q psy11227 105 PDSQLMFEEGSFRRRPRG 122 (148)
Q Consensus 105 p~~~~~~~~~~~rrr~r~ 122 (148)
|+++.+|++|.+|||+++
T Consensus 81 p~~~~~f~~g~~~rrr~r 98 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYR 98 (100)
T ss_dssp C-----------------
T ss_pred cCHHHHHhCCCcccCCCC
Confidence 999999999999987654
No 4
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=2.8e-46 Score=274.28 Aligned_cols=100 Identities=47% Similarity=0.922 Sum_probs=94.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCccee
Q psy11227 22 TRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYW 101 (148)
Q Consensus 22 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W 101 (148)
....+||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++..+++|||+||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 34478999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeCCchhhhhhcCcccccCC
Q psy11227 102 TVDPDSQLMFEEGSFRRRPR 121 (148)
Q Consensus 102 ~l~p~~~~~~~~~~~rrr~r 121 (148)
+|||+++..|+++.||||++
T Consensus 91 ~l~p~~~~~~~~~~~r~rr~ 110 (111)
T 2c6y_A 91 RIDPASESKLIEQAFRKRRP 110 (111)
T ss_dssp EECHHHHHHHHHHHTCCCCC
T ss_pred EeChhHHHhhhcccccccCC
Confidence 99999999999999998765
No 5
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.1e-46 Score=273.23 Aligned_cols=99 Identities=60% Similarity=1.094 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCC
Q psy11227 26 EKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDP 105 (148)
Q Consensus 26 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p 105 (148)
+||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+++.+++|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred chhhhhhcCcccccCCCCC
Q psy11227 106 DSQLMFEEGSFRRRPRGKF 124 (148)
Q Consensus 106 ~~~~~~~~~~~rrr~r~~~ 124 (148)
+++.+|++|.++||+++..
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~ 100 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFK 100 (109)
T ss_dssp TCCHHHHSSSCC-------
T ss_pred cHHHHHhCCCcccCccccc
Confidence 9999999999988776543
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=4.3e-42 Score=254.01 Aligned_cols=89 Identities=42% Similarity=0.760 Sum_probs=78.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCC-----CCcccchhhhcccccceeeCccCC
Q psy11227 18 KKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPY-----QGWKNSIRHNLSLNECFLKLPKAL 92 (148)
Q Consensus 18 ~~~~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~-----~gWknSIRHnLS~~~~F~Kv~r~~ 92 (148)
+|.++++++||||||++||++||+++|+++|||+|||+||+++||||+..+ .|||||||||||+|+||+||+++
T Consensus 2 ~~~~s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~- 80 (117)
T 3coa_C 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNE- 80 (117)
T ss_dssp -----CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCS-
T ss_pred CcccCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccC-
Confidence 678889999999999999999999999999999999999999999999875 79999999999999999999984
Q ss_pred CCCCCcceeEeCCchh
Q psy11227 93 GRPGKGHYWTVDPDSQ 108 (148)
Q Consensus 93 ~~~GKG~~W~l~p~~~ 108 (148)
++|||+||+|||++.
T Consensus 81 -~~GKg~~W~l~p~~~ 95 (117)
T 3coa_C 81 -GTGKSSWWMLNPEGG 95 (117)
T ss_dssp -STTCCCEEEECC---
T ss_pred -CCCCcceEEECcccc
Confidence 689999999999864
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=2.4e-41 Score=247.65 Aligned_cols=92 Identities=40% Similarity=0.725 Sum_probs=76.7
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCC-----CCCcccchhhhcccccceeeCcc
Q psy11227 16 VEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGP-----YQGWKNSIRHNLSLNECFLKLPK 90 (148)
Q Consensus 16 ~~~~~~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~-----~~gWknSIRHnLS~~~~F~Kv~r 90 (148)
..++...++++||||||++||++||+++|+++|||+|||+||+++||||+.. ..|||||||||||+|+||+||++
T Consensus 13 ~~~~~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r 92 (110)
T 3l2c_A 13 GPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN 92 (110)
T ss_dssp -------CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC
T ss_pred CCCCCccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCC
Confidence 3566778889999999999999999999999999999999999999999976 47999999999999999999998
Q ss_pred CCCCCCCcceeEeCCchhh
Q psy11227 91 ALGRPGKGHYWTVDPDSQL 109 (148)
Q Consensus 91 ~~~~~GKG~~W~l~p~~~~ 109 (148)
+ ++|||+||+|||+++.
T Consensus 93 ~--~~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 93 E--ATGKSSWWMLNPEGGK 109 (110)
T ss_dssp C--STTCCCEEEEC-----
T ss_pred C--CCCCCceEEECccccC
Confidence 5 7899999999998753
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=5.2e-41 Score=235.93 Aligned_cols=80 Identities=44% Similarity=0.800 Sum_probs=75.7
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCC-----CCCcccchhhhcccccceeeCccCCCCCCC
Q psy11227 23 RRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGP-----YQGWKNSIRHNLSLNECFLKLPKALGRPGK 97 (148)
Q Consensus 23 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~-----~~gWknSIRHnLS~~~~F~Kv~r~~~~~GK 97 (148)
++++||||||++||++||+++|+++|||+|||+||+++||||+.. ..|||||||||||+|+||+||+++ ++||
T Consensus 1 ~rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GK 78 (85)
T 3bpy_A 1 RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGK 78 (85)
T ss_dssp CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTC
T ss_pred CCCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCC
Confidence 578899999999999999999999999999999999999999975 469999999999999999999984 7899
Q ss_pred cceeEeC
Q psy11227 98 GHYWTVD 104 (148)
Q Consensus 98 G~~W~l~ 104 (148)
|+||+||
T Consensus 79 g~~W~ld 85 (85)
T 3bpy_A 79 SSWWMLN 85 (85)
T ss_dssp CCEEEEC
T ss_pred CCceecC
Confidence 9999997
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=5.3e-41 Score=257.10 Aligned_cols=104 Identities=38% Similarity=0.672 Sum_probs=80.6
Q ss_pred CCcccccCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCC-----CCCcccchhhhcccccceeeC
Q psy11227 14 GSVEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGP-----YQGWKNSIRHNLSLNECFLKL 88 (148)
Q Consensus 14 ~~~~~~~~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~-----~~gWknSIRHnLS~~~~F~Kv 88 (148)
+...++...+++.||||||++||++||+++|+++|||+|||+||+++||||+.. ..|||||||||||+|+||+||
T Consensus 27 ~~~~~~~~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv 106 (150)
T 1e17_A 27 VTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKV 106 (150)
T ss_dssp --------CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEE
T ss_pred CCCCccCCCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEec
Confidence 455567888999999999999999999999999999999999999999999964 379999999999999999999
Q ss_pred ccCCCCCCCcceeEeCCchhhhhhcCcccccCCC
Q psy11227 89 PKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRG 122 (148)
Q Consensus 89 ~r~~~~~GKG~~W~l~p~~~~~~~~~~~rrr~r~ 122 (148)
++ +++|||+||+|||++.. .|..+||++.
T Consensus 107 ~r--~~~GKG~~W~ldp~~~~---~gk~~Rrr~~ 135 (150)
T 1e17_A 107 HN--EATGKSSWWMLNPEGGK---SGKAPRRRAA 135 (150)
T ss_dssp CC--TTTSSSCEEEECTTCC--------------
T ss_pred CC--CCCCCcceEEECccccc---CCcccccccc
Confidence 98 47899999999998743 3444444443
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=2.5e-40 Score=235.91 Aligned_cols=77 Identities=45% Similarity=0.874 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceeeCccCCCCCCCcceeEeCC
Q psy11227 26 EKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDP 105 (148)
Q Consensus 26 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~~W~l~p 105 (148)
+||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++ |||+||+|||
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 59999999999999999999999999999999999999999999999999999999999999974 6999999998
Q ss_pred ch
Q psy11227 106 DS 107 (148)
Q Consensus 106 ~~ 107 (148)
+.
T Consensus 77 ~~ 78 (93)
T 2a07_F 77 VE 78 (93)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=245.61 Aligned_cols=104 Identities=38% Similarity=0.756 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCC-CCCCcccchhhhcccccceeeCccCCCCCCCcc
Q psy11227 21 CTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRG-PYQGWKNSIRHNLSLNECFLKLPKALGRPGKGH 99 (148)
Q Consensus 21 ~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~-~~~gWknSIRHnLS~~~~F~Kv~r~~~~~GKG~ 99 (148)
.....+||||||++||++||+++|+++|||+|||+||+++||||+. +..|||||||||||+|+||+|+. +++|||+
T Consensus 12 ~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg~ 88 (142)
T 3g73_A 12 QNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKVS 88 (142)
T ss_dssp --CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCCE
T ss_pred CccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCCc
Confidence 3445779999999999999999999999999999999999999998 78999999999999999999874 4689999
Q ss_pred eeEeCCchhhh-hhcCcccccCCCCCcee
Q psy11227 100 YWTVDPDSQLM-FEEGSFRRRPRGKFKVE 127 (148)
Q Consensus 100 ~W~l~p~~~~~-~~~~~~rrr~r~~~~~~ 127 (148)
||+|||+++.. +.++.||+++++.....
T Consensus 89 ~W~i~p~~~~~l~~d~~~k~~~~~~p~~p 117 (142)
T 3g73_A 89 FWTIHPSANRYLTLDQVFKPLDPGSPQLP 117 (142)
T ss_dssp EEEECTTTCCCCCCC--------------
T ss_pred eEEECccccccchhhhhhccccCCCCCCc
Confidence 99999999654 58888998777765444
No 12
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=91.97 E-value=0.14 Score=34.17 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCCCCCCCC-CCcccchhhhc---ccccceeeC
Q psy11227 31 SYIALIVMAIQSS-PCKKLTLSEIYSFLQQGFPFFRGPY-QGWKNSIRHNL---SLNECFLKL 88 (148)
Q Consensus 31 SYa~LI~~AI~~s-p~~~LtL~eIy~~I~~~fPyyr~~~-~gWknSIRHnL---S~~~~F~Kv 88 (148)
+|..||..||.+. +.+..++..|-.||+.+|+. ..+ .....-+++.| ..+..|+++
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~--~~~~~~~~~~l~~aLk~~v~~G~l~q~ 66 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI--VGSASNFDLYFNNAIKKGVEAGDFEQP 66 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT--TTSSSTHHHHHHHHHHHHHHTTSEECC
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC--CCchHHHHHHHHHHHHHHHHcCCEEec
Confidence 7999999999763 34578999999999999773 111 33333444443 234566664
No 13
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=91.86 E-value=0.2 Score=34.27 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhc---ccccceeeCc
Q psy11227 31 SYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNL---SLNECFLKLP 89 (148)
Q Consensus 31 SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnL---S~~~~F~Kv~ 89 (148)
+|..||..||.+..+ +..++..|..||+.+|+.=.........-+++.| ..+..|+++.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~K 71 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPK 71 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSS
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEecc
Confidence 789999999987544 5789999999999997631111223333344333 2355677664
No 14
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=91.27 E-value=0.17 Score=34.41 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCCC
Q psy11227 30 YSYIALIVMAIQSS-PCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 30 ~SYa~LI~~AI~~s-p~~~LtL~eIy~~I~~~fPy 63 (148)
-+|..||..||.+. +.+..++..|..||+.+|+-
T Consensus 10 p~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 10 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 47899999999763 33567999999999999983
No 15
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=90.58 E-value=0.24 Score=34.06 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhc---ccccceeeCccCCCCCCCcceeEeCCc
Q psy11227 31 SYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNL---SLNECFLKLPKALGRPGKGHYWTVDPD 106 (148)
Q Consensus 31 SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnL---S~~~~F~Kv~r~~~~~GKG~~W~l~p~ 106 (148)
+|..||..||.+..+ +..++..|-.||+.+|+. ......-+++.| ..+..|+++... |-.+...|.+.
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~----~~~~~~~l~~aLk~~v~~G~l~q~Kg~----GasGsfkl~~~ 80 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKV----GHNADLQIKLSIRRLLAAGVLKQTKGV----GASGSFRLAKS 80 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCC----CTTHHHHHHHHHHHHHHTTSEEEECCS----SCCCEEEECC-
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccC----chhHHHHHHHHHHHHHHcCCeeeecCC----CccceeecCCC
Confidence 789999999987554 478999999999999772 122233344333 235677776531 23344556553
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=89.19 E-value=0.26 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCC
Q psy11227 30 YSYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 30 ~SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fPy 63 (148)
-+|..||..||.+..+ +..++..|-.||+.+|+.
T Consensus 8 P~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 8 KSYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 3789999999987544 578999999999999763
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=81.65 E-value=0.33 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCC
Q psy11227 29 PYSYIALIVMAIQSSPC-KKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 29 p~SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~fP 62 (148)
|-+|..||..||.+..+ +.-++..|..+|+.+++
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 34899999999987444 56789999999999875
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=63.99 E-value=1.2 Score=28.95 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=25.8
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhc
Q psy11227 31 SYIALIVMAIQSSPC-KKLTLSEIYSFLQQG 60 (148)
Q Consensus 31 SYa~LI~~AI~~sp~-~~LtL~eIy~~I~~~ 60 (148)
+|..||..||....+ +..++.-|..+|+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 689999999987544 567899999999999
No 19
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=58.37 E-value=36 Score=23.78 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhccc-ccceeeCccC
Q psy11227 27 KPPYSYIALIVMAIQS--SPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSL-NECFLKLPKA 91 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~--sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~-~~~F~Kv~r~ 91 (148)
..+-.-..||..||.. ..++-+.|.+|-.+|.+.+|-|..-.=|.+ +.+.-|-. -+.|+-..+.
T Consensus 17 ~~d~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnYGy~-kLs~Li~a~~~~FEi~~r~ 83 (105)
T 2kpm_A 17 TKQAFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLYGYK-KLSDLVKARTDLFVTEERQ 83 (105)
T ss_dssp CCCCCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGTTCS-SHHHHHHHCTTTEEEEEEE
T ss_pred cccHHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCccccCcc-cHHHHHHhhCCcEEEEeec
Confidence 3344567899999965 456889999999999999999864333332 23333322 3456544433
No 20
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=54.25 E-value=16 Score=28.03 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHhc----------CCCCCCCHH-HHHHHHHhcCCCCCC----CCCCcccchhhhccc-ccceeeCcc
Q psy11227 27 KPPYSYIALIVMAIQS----------SPCKKLTLS-EIYSFLQQGFPFFRG----PYQGWKNSIRHNLSL-NECFLKLPK 90 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~----------sp~~~LtL~-eIy~~I~~~fPyyr~----~~~gWknSIRHnLS~-~~~F~Kv~r 90 (148)
|=+.+...|+..||-+ .+.+-..+. ||.-+|.+++-.... ....|...|-..|+. +..|..-..
T Consensus 66 R~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~~~~ 145 (177)
T 3rsn_A 66 RKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEH 145 (177)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEEESS
T ss_pred eccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEeccC
Confidence 4467888998888755 244555666 999999999998853 336899999999995 568866443
No 21
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=46.15 E-value=7.2 Score=31.71 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHH--HHHHHhcCCCCCCCCCCccc
Q psy11227 32 YIALIVMAIQSSPCKKLTLSEI--YSFLQQGFPFFRGPYQGWKN 73 (148)
Q Consensus 32 Ya~LI~~AI~~sp~~~LtL~eI--y~~I~~~fPyyr~~~~gWkn 73 (148)
-..||...|.-.|.+++|..|+ +.||.. .|||+.. .|.+
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4578999999999999999998 677865 5999865 4653
No 22
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=43.67 E-value=49 Score=22.40 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhcccccceee
Q psy11227 27 KPPYSYIALIVMAIQS--SPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLK 87 (148)
Q Consensus 27 KPp~SYa~LI~~AI~~--sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~~~~F~K 87 (148)
|.+-.-..||..||.. ..++-..|.+|-++|...+|-|..-.=|.+ +...-|-.-+.|+-
T Consensus 4 ~~d~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~-kLs~Li~~~~~fe~ 65 (92)
T 2kzv_A 4 KEKHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHG-RLSQMVKKLDFLTV 65 (92)
T ss_dssp SCCSSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSS-HHHHHHHTCTTEEE
T ss_pred cchHHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcc-cHHHHHHhcCcEEE
Confidence 3444667899999864 557889999999999999999965444443 33333333455654
No 23
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=36.61 E-value=24 Score=20.09 Aligned_cols=18 Identities=33% Similarity=0.844 Sum_probs=11.2
Q ss_pred CCCCCCCCH---HHHHHHHHh
Q psy11227 24 RAEKPPYSY---IALIVMAIQ 41 (148)
Q Consensus 24 ~~~KPp~SY---a~LI~~AI~ 41 (148)
...||||.| ..|+-+||.
T Consensus 3 ~~akp~y~frt~WalllLaIN 23 (35)
T 1jb0_X 3 KSAKPTYAFRTFWAVLLLAIN 23 (35)
T ss_dssp ----CCCCHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHH
Confidence 356899999 777777764
No 24
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.42 E-value=49 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy11227 34 ALIVMAIQSSPCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 34 ~LI~~AI~~sp~~~LtL~eIy~~I~~~fPy 63 (148)
..|-.+|.+++++-+|..|||+.+...+|-
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~ 50 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGED 50 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC
Confidence 345666666554789999999999998874
No 25
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=28.80 E-value=30 Score=27.32 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHH--HHHhcCCC
Q psy11227 32 YIALIVMAIQSSPCKKLTLSEIYS--FLQQGFPF 63 (148)
Q Consensus 32 Ya~LI~~AI~~sp~~~LtL~eIy~--~I~~~fPy 63 (148)
...||...|.-.|.+++|..||.+ ||...+|-
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~ 272 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 272 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCG
T ss_pred HHHHHHHHccCChhHCcCHHHHHcCcccccCCCh
Confidence 567899999999999999999976 77776663
No 26
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.28 E-value=43 Score=20.88 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhccc
Q psy11227 35 LIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSL 81 (148)
Q Consensus 35 LI~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~ 81 (148)
.|-.+|...+++.+|+.||++.+...+|-. =+.+|..+|..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~i------s~~TVyR~L~~ 61 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEI------GLATVYRVLNQ 61 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCC------CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCC------CHhhHHHHHHH
Confidence 345555554326799999999998877632 24578887754
No 27
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=23.57 E-value=74 Score=23.45 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCCCCcccchhhhccc--cc-ceeeCccCCCCCCC---cceeEeCCchhh
Q psy11227 36 IVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSL--NE-CFLKLPKALGRPGK---GHYWTVDPDSQL 109 (148)
Q Consensus 36 I~~AI~~sp~~~LtL~eIy~~I~~~fPyyr~~~~gWknSIRHnLS~--~~-~F~Kv~r~~~~~GK---G~~W~l~p~~~~ 109 (148)
|...|+..|.+-+|+.||++. +| .-=+..|+++|.. .. .-.++....+..+. -.+|.|.+....
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~----l~------~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYR----NP------DETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHH----CT------TSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHh----cC------CCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHH
Confidence 455566778788999999864 22 1125689999865 23 33333333222333 358999988777
Q ss_pred hhhc
Q psy11227 110 MFEE 113 (148)
Q Consensus 110 ~~~~ 113 (148)
.|.+
T Consensus 104 ~l~~ 107 (151)
T 3u1d_A 104 LLRA 107 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 28
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=21.75 E-value=1e+02 Score=22.75 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy11227 29 PYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFP 62 (148)
Q Consensus 29 p~SYa~LI~~AI~~sp~~~LtL~eIy~~I~~~fP 62 (148)
|-....||...+...|..+.|..||.+.+.+-+.
T Consensus 247 ~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 247 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3357899999999999999999999999887554
No 29
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.95 E-value=75 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy11227 35 LIVMAIQSSPCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 35 LI~~AI~~sp~~~LtL~eIy~~I~~~fPy 63 (148)
.|-.+|.+++ +-+|..|||+.+...+|-
T Consensus 18 ~Il~~L~~~~-~h~sa~eI~~~l~~~~~~ 45 (139)
T 3mwm_A 18 AVSAALQEVE-EFRSAQELHDMLKHKGDA 45 (139)
T ss_dssp HHHHHHTTCS-SCEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHhCCC
Confidence 4555666654 589999999999988874
No 30
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.81 E-value=54 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy11227 34 ALIVMAIQSSPCKKLTLSEIYSFLQQGFPF 63 (148)
Q Consensus 34 ~LI~~AI~~sp~~~LtL~eIy~~I~~~fPy 63 (148)
..|..+|..++++-+|..|||+.+...+|-
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~ 49 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEE 49 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCC
Confidence 345556655543679999999999998874
Done!