RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11227
(148 letters)
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 155 bits (394), Expect = 3e-50
Identities = 59/96 (61%), Positives = 76/96 (79%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAIQ SP K LTLSEIY ++ FP++R QGW+NSIRHNLSLN+CF+
Sbjct: 1 KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPRG 122
K+P++ +PGKG YWT+DP+S+ MFE G + +R +
Sbjct: 61 KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH is
named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather than
segmental development. This family of transcription
factor domains, which bind to B-DNA as monomers, are
also found in the Hepatocyte nuclear factor (HNF)
proteins, which provide tissue-specific gene regulation.
The structure contains 2 flexible loops or "wings" in
the C-terminal region, hence the term winged helix.
Length = 78
Score = 152 bits (386), Expect = 3e-49
Identities = 52/78 (66%), Positives = 62/78 (79%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSY ALI MAIQSSP K+LTLSEIY ++ FP+FR GW+NSIRHNLSLN+CF+
Sbjct: 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFV 60
Query: 87 KLPKALGRPGKGHYWTVD 104
K+P+ PGKG YWT+D
Sbjct: 61 KVPREPDEPGKGSYWTLD 78
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 150 bits (382), Expect = 1e-48
Identities = 57/89 (64%), Positives = 72/89 (80%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KPPYSYIALI MAI SSP K+LTLSEIY +++ FP++R GW+NSIRHNLSLN+CF+
Sbjct: 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFV 60
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGS 115
K+P+ RPGKG YWT+DP ++ MFE G+
Sbjct: 61 KVPREGDRPGKGSYWTLDPAAENMFENGN 89
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 86.4 bits (214), Expect = 2e-20
Identities = 43/95 (45%), Positives = 58/95 (61%)
Query: 27 KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
KP +SY I AI SSP K+TLSEIYS++ P++R W+NSIRHNLSLN+ F
Sbjct: 337 KPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFE 396
Query: 87 KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPR 121
K+P++ +PGKG +W +D E R P+
Sbjct: 397 KVPRSASQPGKGCFWKIDYSYIYEKESKRNPRSPK 431
Score = 78.7 bits (194), Expect = 6e-18
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 5 NVNNNANNSGSV----EKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQG 60
N N + S + + PPYSY +AI +SP K LTLS+IY+++
Sbjct: 60 NSLNRSVGSEEIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNT 119
Query: 61 FPFFRGPYQGWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLMFEEGSFRR 118
F ++ W+NSIRHNLSLN+ F+K+ G KGH+W++ P + F + R
Sbjct: 120 FFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHETQFLKSGLRL 177
>gnl|CDD|177455 PHA02673, PHA02673, ORF109 EEV glycoprotein; Provisional.
Length = 161
Score = 29.5 bits (66), Expect = 0.45
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 7 NNNANNSGSVEKKKCTRRAEKPPYSY---IALIVMAI 40
NNAN SV+++K RR K + IA+IV+AI
Sbjct: 13 ANNANYVASVKRQKAIRRYIKLFFRLMAAIAIIVLAI 49
>gnl|CDD|197503 smart00076, IFabd, Interferon alpha, beta and delta. Interferons
produce antiviral and antiproliferative responses in
cells. They are classified into five groups, all of
them related but gamma-interferon.
Length = 117
Score = 27.7 bits (62), Expect = 1.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 46 KKLTLSEIYSFLQQGFPFFRGPYQ--GWKNSIRHNLSLNE 83
K S I+ LQQ F F P W ++ +L LNE
Sbjct: 16 KAQAASVIHEMLQQIFNIFSSPSSSAAWNETLLESL-LNE 54
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 24 RAEKPPYSY-IALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGP 67
R + P Y Y A+ +A L L +++S + G FF G
Sbjct: 294 RKDLPRYYYPAAVAGLAALGILVLALALPDLFSLINNGLRFFFGG 338
>gnl|CDD|238047 cd00095, IFab, Interferon alpha, beta. Includes also interferon
omega and tau. Different from interferon gamma family.
Type I interferons(alpha, beta) belong to the larger
helical cytokine superfamily, which includes growth
hormones, interleukins, several colony-stimulating
factors and several other regulatory molecules. All
function as regulators of cellular activty by
interacting with cell-surface receptors and activating
various signalling pathways. Interferons produce
antiviral and antiproliferative responses in cells.
Receptor specificity determines function of the various
members of the family.
Length = 152
Score = 27.3 bits (61), Expect = 2.1
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 46 KKLTLSEIYSFLQQGFPFFRGPYQ--GWKNSIRHNLSLNE 83
K S ++ LQQ F F P W ++ +L LNE
Sbjct: 48 KAQAASVLHEMLQQIFNIFSTPSSSAAWNETLLESL-LNE 86
>gnl|CDD|176265 cd04263, DUF619-NAGK-FABP, DUF619 domain of N-acetylglutamate
kinase (NAGK) of the fungal arginine-biosynthetic
pathway. DUF619-NAGK-FABP: DUF619 domain of
N-acetylglutamate kinase (NAGK) of the fungal
arginine-biosynthetic pathway (FABP). The
nuclear-encoded, mitochondrial polyprotein precursor
(ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a
central DUF619 domain, and a C-terminal reductase domain
(ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR).
The precursor is cleaved into two distinct enzymes
(NAGK-DUF619 and NAGPR) in the mitochondria. Native
molecular weights of these proteins indicate that the
kinase is an octamer whereas the reductase is a dimer.
Arg5,6 catalyzes the second reaction of arginine
biosynthesis; the phosphorylation of the gamma-carboxyl
group of NAG to produce N-acetylglutamylphosphate (NAGP)
which is subsequently converted to ornithine in two more
steps. It also binds and regulates the promoters of
nuclear and mitochondrial genes, and may possibly
regulate precursor mRNA metabolism. The DUF619 domain
function has yet to be characterized.
Length = 98
Score = 26.5 bits (59), Expect = 3.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 70 GWKNSIRHNLSLNECFLKLPKALGRPGKGHYWTVDPDSQLM---FE--EGSFRRR 119
GW N++ N+ F A+ + WTV D + + FE +GSF R
Sbjct: 45 GWLNNVADNI-----F----TAIKKDHPKLVWTVREDDENLKWHFEKADGSFTRN 90
>gnl|CDD|220550 pfam10070, DUF2309, Uncharacterized protein conserved in bacteria
(DUF2309). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 783
Score = 27.2 bits (61), Expect = 4.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 55 SFLQQGFPFFR------GPYQGWKNSIRHNLSL 81
++ +G +R G Y W+ RH+L L
Sbjct: 131 AYFDEGQALWRMPGREKGFYAAWRELARHDLGL 163
>gnl|CDD|216582 pfam01578, Cytochrom_C_asm, Cytochrome C assembly protein. This
family consists of various proteins involved in
cytochrome c assembly from mitochondria and bacteria;
CycK from Rhizobium, CcmC from E. coli and Paracoccus
denitrificans and orf240 from wheat mitochondria. The
members of this family are probably integral membrane
proteins with six predicted transmembrane helices. It
has been proposed that members of this family comprise a
membrane component of an ABC (ATP binding cassette)
transporter complex. It is also proposed that this
transporter is necessary for transport of some component
needed for cytochrome c assembly. One member CycK
contains a putative heme-binding motif, orf240 also
contains a putative heme-binding motif and is a proposed
ABC transporter with c-type heme as its proposed
substrate. However it seems unlikely that all members of
this family transport heme nor c-type apocytochromes
because CcmC in the putative CcmABC transporter
transports neither.
Length = 211
Score = 25.8 bits (57), Expect = 8.8
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 31 SYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLS-----LNECF 85
SY LI+ A+ LS + + + LS + F
Sbjct: 82 SYATLIIAAL---------LSIALLLIDRAKKKLKNSNNLPPLKTLDRLSYRIILIGFVF 132
Query: 86 LKLPKALG----RPGKGHYWTVDP 105
L L G G YW DP
Sbjct: 133 LTLGLITGSLWANEMWGTYWVWDP 156
>gnl|CDD|206208 pfam14038, YqzE, YqzE-like protein. The YqzE-like protein family
includes the B. subtilis YqzE protein, which is
functionally uncharacterized. It is a part of the ComG
operon, which is regulated by the competence
transcription factor ComK. This family of proteins is
found in bacteria. Proteins in this family are
typically between 49 and 66 amino acids in length.
Length = 54
Score = 24.2 bits (53), Expect = 9.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 18 KKKCTRRAEKPPYSY 32
+KK R+ EKPP+SY
Sbjct: 26 EKKEERKEEKPPFSY 40
>gnl|CDD|165469 PHA03202, PHA03202, uracil DNA glycosylase; Provisional.
Length = 313
Score = 25.8 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 49 TLSEIYSFLQQGFPFFRGPYQGW 71
+L IYS +Q+ +P FR P G+
Sbjct: 180 SLRNIYSAVQKSYPSFRPPMHGF 202
>gnl|CDD|216393 pfam01257, Complex1_24kDa, Respiratory-chain NADH dehydrogenase 24
Kd subunit.
Length = 145
Score = 25.5 bits (57), Expect = 9.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 116 FRRRPRGKFKVEVQLGTM 133
F +P GK+ ++V T
Sbjct: 58 FNLKPVGKYHIQVCTTTP 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,431,204
Number of extensions: 649863
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 20
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)