RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11227
         (148 letters)



>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score =  143 bits (363), Expect = 3e-46
 Identities = 49/96 (51%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSY  LIV AI  +P K+LTL+ IY+ + + +P++R   +GW+NSIRHNLSLN  F+
Sbjct: 3   KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62

Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSF-RRRPR 121
           K+P++   PGKG +W +DP S+    E +F +RRPR
Sbjct: 63  KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98


>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 97

 Score =  143 bits (362), Expect = 3e-46
 Identities = 59/95 (62%), Positives = 73/95 (76%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSYIALI MAI  SP KKLTLS I  F+   FP++R  +  W+NSIRHNLSLN+CF+
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSFRRRPR 121
           K+P+  G PGKG+YWT+DP S+ MF+ GSF RR +
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRK 96


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
           fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score =  141 bits (357), Expect = 2e-45
 Identities = 61/90 (67%), Positives = 73/90 (81%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           KPPYSYIALI MAIQ++P KK+TL+ IY F+   FPF+R   QGW+NSIRHNLSLNECF+
Sbjct: 4   KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63

Query: 87  KLPKALGRPGKGHYWTVDPDSQLMFEEGSF 116
           K+P+   +PGKG YWT+DPDS  MFE GSF
Sbjct: 64  KVPRDDKKPGKGSYWTLDPDSYNMFENGSF 93


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score =  117 bits (295), Expect = 4e-36
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 27  KPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFL 86
           +PP++Y  LI  AI  S  ++LTL+EIYS+  + F +FR     WKN++RHNLSL++CF+
Sbjct: 2   RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61

Query: 87  KLPKALGRPGKGHYWTVDPDS 107
           ++        KG  WTVD   
Sbjct: 62  RVE-----NVKGAVWTVDEVE 77


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 75

 Score =  113 bits (284), Expect = 1e-34
 Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 32  YIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPYQGWKNSIRHNLSLNECFLKLPKA 91
           YIALI MAI+ S   +LTL+EI  +L   FPFFRG Y GW+NS+RHNLSLN+CF+K+ + 
Sbjct: 1   YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60

Query: 92  LGRP-GKGHYWTVDP 105
             RP GK +YW ++P
Sbjct: 61  PSRPWGKDNYWMLNP 75


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score =  113 bits (284), Expect = 2e-34
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 23  RRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQGFPFFRGPY-----QGWKNSIRH 77
           RR      SY  LI  AI+S+P K+LTL++IY ++ +  P+F+         GWKNSIRH
Sbjct: 1   RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRH 60

Query: 78  NLSLNECFLKLPKALGRPGKGHYWTVD 104
           NLSL+  F+K+       GK  +W ++
Sbjct: 61  NLSLHSKFIKVHN--EATGKSSWWMLN 85


>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean
           (Glycine max), beta-conglycinin alpha prime subunit
           [TaxId: 3847]}
          Length = 185

 Score = 25.7 bits (56), Expect = 1.9
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 96  GKGHYWTVDPDSQLMFEEGSFRRRPRGKFKVEVQLGTMGIFITYYLHSQ 144
           G+ +   V    Q   ++   +     K++ E+    + +    Y    
Sbjct: 72  GEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVV 120


>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 301

 Score = 24.0 bits (51), Expect = 9.4
 Identities = 8/44 (18%), Positives = 14/44 (31%)

Query: 16  VEKKKCTRRAEKPPYSYIALIVMAIQSSPCKKLTLSEIYSFLQQ 59
           V         E  P     L+ +     P  + +   I+  LQ+
Sbjct: 255 VRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQR 298


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,296
Number of extensions: 24896
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)