BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11229
(705 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/414 (57%), Positives = 294/414 (71%), Gaps = 63/414 (15%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
E+VRV VR RP++ KE K ++D V
Sbjct: 21 ESVRVVVRCRPMNGKE-------------------------------KAASYDKVVD--- 46
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
VD+ G ++VKNP G+AHE PKTFTFD V+D N+KQ ++Y+ET RP+VD VL GFNGTIF
Sbjct: 47 VDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIF 106
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTGTGKT+TMEG+ PE +G+IPNSF HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 107 AYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEI 165
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
RDLLSK++ + LE+KERPD GVYVKDLS+++ + ++E +M++GN+
Sbjct: 166 RDLLSKDQTKRLELKERPDT-------------GVYVKDLSSFVTKSVKEIEHVMNVGNQ 212
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
NRSVGAT MNE SSRSHAIF I IE S GL G + +++G+L+LVD
Sbjct: 213 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDG--------------ENHIRVGKLNLVD 258
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
LAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKLTR+LQDSL
Sbjct: 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSL 318
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 428
GGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL ++Q
Sbjct: 319 GGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/436 (49%), Positives = 284/436 (65%), Gaps = 85/436 (19%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
E ++V R RPLS+KE AGH I T+D
Sbjct: 21 EALKVVARCRPLSRKEEAAGHEQILTMD-------------------------------- 48
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
V L G +T++NP + E PKTFTFD V+DA+SKQ D+Y+ET RP++D VL GFNGT+F
Sbjct: 49 VKL--GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVF 106
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTGTGKT+TM+G PEL+G+IPN+F HIF HI+++ ++ ++LVR SY EIY EEI
Sbjct: 107 AYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRS-QNQQYLVRASYLEIYQEEI 165
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
RDLLSK E +R LE+KE P+ GVY+KDLS+++ N ++E +M+LGN+
Sbjct: 166 RDLLSK------EPGKR-------LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQ 212
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
R+VG+T MNEVSSRSHAIF I +E S ++ Q +++G+L+LVDL
Sbjct: 213 TRAVGSTHMNEVSSRSHAIFIITVECSE-------------RGSDGQDHIRVGKLNLVDL 259
Query: 316 AGSERQAKTG---ASG---------------------QRLKEASKINLSLSTLGNVISAL 351
AGSERQ K G A G +R KEASKINLSLS LGNVI+AL
Sbjct: 260 AGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAAL 319
Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
+ THIPYR+SKLTR+LQDSLGGN+KT+M AT+GPAS++Y+E++STLR+A+R K I N
Sbjct: 320 AGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKN 379
Query: 412 KARVNQDPKDALLIKY 427
K RVN+DPKD LL ++
Sbjct: 380 KPRVNEDPKDTLLREF 395
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 328 bits (840), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 242/407 (59%), Gaps = 62/407 (15%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+N++V VR RPL+ +E+ ++I +D + + V +PP+
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIV--------DPPEQ----------- 44
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
+ A A + P+TFTFD V+D S I+ + +P++D VL GFN TIF
Sbjct: 45 ----------EKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIF 94
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTG GKT+TM G P G IPNSF H+F I + + FLV SY E+YNEEI
Sbjct: 95 AYGQTGAGKTWTMGGNKEEP---GAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
RDL+ N L +KE G+YV LS + A ++ +M G
Sbjct: 152 RDLIKNNTK---------------LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFA 196
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR V AT MN+ SSRSH+IF + IE S + K +++G+L+LVDL
Sbjct: 197 NRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEV--------------IRVGKLNLVDL 242
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G THIPYR+SKLTR+LQDSLG
Sbjct: 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLG 301
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDA 422
GNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 285 bits (730), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 221/360 (61%), Gaps = 37/360 (10%)
Query: 72 PYSTVDLLNG---IITVKNP---AGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
P + V++ +G I+T + P + E +FTFD VFD + KQ DI++ + +P VD
Sbjct: 16 PQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDD 75
Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHIAKADESVKFLVR 184
+L+G+NGT+FAYGQTG GK++TM G + + P+ +G+IP IF I + ++++ VR
Sbjct: 76 ILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVR 135
Query: 185 VSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD 244
VSY EIY E IRDLL+ D L V E + GVYVK L ++
Sbjct: 136 VSYMEIYMERIRDLLAPQNDN--------------LPVHEEKNRGVYVKGLLEIYVSSVQ 181
Query: 245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGS 304
++ ++M G R+V AT MN+ SSRSH+IF I I T +N GS
Sbjct: 182 EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI-----------TQKNVE-----TGS 225
Query: 305 VQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
+ G+L LVDLAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+S
Sbjct: 226 AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDS 285
Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
KLTRILQ+SLGGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L
Sbjct: 286 KLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/426 (41%), Positives = 235/426 (55%), Gaps = 71/426 (16%)
Query: 2 SQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEP 61
SQ S + E+ +N++V VRVRP + E A I D + ++V+ G A +
Sbjct: 3 SQPNSSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRT-GGLADKS 61
Query: 62 PKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP 121
+ KT+TFD VF A++KQ+D+Y P
Sbjct: 62 SR---------------------------------KTYTFDMVFGASTKQIDVYRSVVAP 88
Query: 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE--------LKGIIPNSFAHIFGHIA 173
I+D+V+ G+N TIFAYGQTGTGKTFTMEG + E L GIIP + IF +
Sbjct: 89 ILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPRTLHQIFEKLT 148
Query: 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP--DIGVY 231
D +F V+VS EIYNEE+ DLL+ + D V ER L++ + P GV
Sbjct: 149 --DNGTEFSVKVSLLEIYNEELFDLLNPSSD----VSER-------LQMFDDPRNKRGVI 195
Query: 232 VKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTT 291
+K L +N D++ +I+ G R+ AT MN SSRSH++FS+ I K TT
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM------KETT 249
Query: 292 GENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL 351
+ L V++G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+AL
Sbjct: 250 IDGEEL-------VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
V+ + H+PYR SKLTRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I N
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 412 KARVNQ 417
K VNQ
Sbjct: 362 KPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 63 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 122
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 123 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 176
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 177 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 229
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 230 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 276
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 277 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 206/332 (62%), Gaps = 39/332 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN--- 153
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG +
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 154 ------VPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCL 207
VP L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 124 EYTWEEVP-LAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD--- 177
Query: 208 EVKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMN 265
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 178 -VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMN 229
Query: 266 EVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++G
Sbjct: 230 AYSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSG 276
Query: 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 385
A +R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT
Sbjct: 277 AVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 386 VGPASYNYEETISTLRYASRVKKICNKARVNQ 417
+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 124 EYTWEEDPLDGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 55 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 114
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 115 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 168
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 169 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 221
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 222 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 268
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 269 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 124 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 66 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 125
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 126 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 179
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 180 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 232
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 233 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 279
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 280 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 205/331 (61%), Gaps = 37/331 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 124 EYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 177
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 178 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 231 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 277
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 278 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 387 GPASYNYEETISTLRYASRVKKICNKARVNQ 417
PAS N EET+STL YA R K I NK VNQ
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/326 (47%), Positives = 202/326 (61%), Gaps = 37/326 (11%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFAYGQTGTGKTFTMEG + E
Sbjct: 49 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 108
Query: 157 --------LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLE 208
L GIIP + IF + D +F V+VS EIYNEE+ DLL+ + D
Sbjct: 109 EYTWEEDPLAGIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSD---- 162
Query: 209 VKERPDIGVYCLEVKERP--DIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V ER L++ + P GV +K L +N D++ +I+ G R+ AT MN
Sbjct: 163 VSER-------LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 215
Query: 267 VSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326
SSRSH++FS+ I K TT + L V++G+L+LVDLAGSE ++GA
Sbjct: 216 YSSRSHSVFSVTIHM------KETTIDGEEL-------VKIGKLNLVDLAGSENIGRSGA 262
Query: 327 SGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 386
+R +EA IN SL TLG VI+ALV+ + H+PYR SKLTRILQDSLGG ++T + AT+
Sbjct: 263 VDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 387 GPASYNYEETISTLRYASRVKKICNK 412
PAS N EET+STL YA R K I NK
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/322 (45%), Positives = 194/322 (60%), Gaps = 30/322 (9%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K + FD VF N+ Q +YNE A+ IV VL+G+NGTIFAYGQT +GKT TMEGV
Sbjct: 51 KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSV 110
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
+GIIP IF HI + +++F ++VSY+EIY ++IRDLL D+
Sbjct: 111 KQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL--------------DVS 156
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L V E + YVK + ++ +D+ +++ G NR + T MNE SSRSH++F
Sbjct: 157 KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFL 216
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
I + K+ EN + + G+L+LVDLAGSE+ +KTGA G L EA
Sbjct: 217 INV--------KQENLENQKKLS--------GKLYLVDLAGSEKVSKTGAEGTVLDEAKN 260
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
IN SLS LGNVISAL DG THIPYR+SKLTRILQ+SLGGN++T + PAS+N ET
Sbjct: 261 INKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESET 320
Query: 397 ISTLRYASRVKKICNKARVNQD 418
STL + R K + N VN++
Sbjct: 321 KSTLDFGRRAKTVKNVVCVNEE 342
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 248 bits (633), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 146/320 (45%), Positives = 189/320 (59%), Gaps = 31/320 (9%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K + FD VF +++ Q +YN+ A+ IV VL G+NGTIFAYGQT +GKT TMEG + PE
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
GIIP IF +I DE+++F ++VSYFEIY ++IRDLL +K
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L V E + YVK + + D++ + G NR V T MNE SSRSH+IF
Sbjct: 153 ---LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
I ++ + T +L G+L+LVDLAGSE+ +KTGA G L EA
Sbjct: 210 INVK-------QENTQTEQKL---------SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
IN SLS LGNVISAL +G T++PYR+SK+TRILQDSLGGN +T + P+SYN ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKICNKARVN 416
STL + R K I N VN
Sbjct: 313 KSTLLFGQRAKTIKNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 246 bits (627), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/320 (45%), Positives = 188/320 (58%), Gaps = 31/320 (9%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K + FD VF +++ Q +YN+ A+ IV VL G+NGTIFAYGQT +GK TMEG + PE
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
GIIP IF +I DE+++F ++VSYFEIY ++IRDLL D+
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL--------------DVS 149
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L V E + YVK + + D++ + G NR V T MNE SSRSH+IF
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
I ++ + T +L G+L+LVDLAGSE+ +KTGA G L EA
Sbjct: 210 INVK-------QENTQTEQKL---------SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
IN SLS LGNVISAL +G T++PYR+SK+TRILQDSLGGN +T + P+SYN ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKICNKARVN 416
STL + R K I N VN
Sbjct: 313 KSTLLFGQRAKTIKNTVCVN 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/313 (45%), Positives = 186/313 (59%), Gaps = 31/313 (9%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K + FD VF +++ Q +YN+ A+ IV VL G+NGTIFAYGQT +GKT TMEG + PE
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
GIIP IF +I DE+++F ++VSYFEIY ++IRDLL +K
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L V E + YVK + + D++ + G NR V T MNE SSRSH+IF
Sbjct: 153 ---LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
I ++ + T +L G+L+LVDLAGSE+ +KTGA G L EA
Sbjct: 210 INVK-------QENTQTEQKLS---------GKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396
IN SLS LGNVISAL +G T++PYR+SK+TRILQDSLGGN +T + P+SYN ET
Sbjct: 254 INKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312
Query: 397 ISTLRYASRVKKI 409
STL + R K I
Sbjct: 313 KSTLLFGQRAKTI 325
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 244 bits (624), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 216/399 (54%), Gaps = 62/399 (15%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKN---PAGSAHEPPKTFTFDTVTPYS 74
V+V VR+RP++++E+D + VD I+ N G A PK F +D +
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHC--FW 60
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
++D ++V + + Q ++ I+ G+N I
Sbjct: 61 SMD------------------------ESVKEKYAGQDIVFKCLGENILQNAFDGYNACI 96
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNE 193
FAYGQTG+GK++TM G + P G+IP + +F K +E F V VSY EIYNE
Sbjct: 97 FAYGQTGSGKSYTMMGTADQP---GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNE 153
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253
++RDLL P L+V+E +G YV LS + D+E +MS G
Sbjct: 154 KVRDLLD------------PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEG 201
Query: 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLV 313
NK+R+V AT MNE SSRSHA+F I + + T+GE ++G+L LV
Sbjct: 202 NKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE------------KVGKLSLV 249
Query: 314 DLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTR 368
DLAGSER KTGA+G RLKE S IN SL+TLG VISAL D K +PYR+S LT
Sbjct: 250 DLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTW 309
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
+L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K
Sbjct: 310 LLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 197/328 (60%), Gaps = 30/328 (9%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K+F FD VF N ++Y E A PI+D + G+NGTIFAYGQT +GKT+TM G +
Sbjct: 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG---SED 100
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
G+IP + IF I K + +FL+RVSY EIYNE I DLL C K +P
Sbjct: 101 HLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLL------CGTQKMKP--- 150
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L ++E + VYV DL+ + ++ K ++ G K+R G T MN+ SSRSH IF
Sbjct: 151 ---LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFR 207
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336
+I+E+ R GE + +GSV++ L+LVDLAGSER A+TGA+G RLKE
Sbjct: 208 MILES-------REKGEP----SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCN 256
Query: 337 INLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
IN SL LG VI L DG+ I YR+SKLTRILQ+SLGGN+KT + T+ P S ++E
Sbjct: 257 INRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDE 314
Query: 396 TISTLRYASRVKKICNKARVNQDPKDAL 423
T++ L++AS K + N VN+ D L
Sbjct: 315 TLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 223/412 (54%), Gaps = 75/412 (18%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+N++V+VRVRPL+ +E ++ VD++ P + T T+ T
Sbjct: 23 QNIQVYVRVRPLNSRERCIRSAEV--VDVVG--------------PREVVTRHTLDSKLT 66
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
K FTFD F SKQ D+Y+ P++++VL+G+N T+F
Sbjct: 67 ---------------------KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVF 105
Query: 136 AYGQTGTGKTFTMEGVNNVPELK---------GIIPNSFAHIFGHIAKADESVKFLVRVS 186
AYGQTGTGKT TM G N ELK GIIP + +H+F + + V++ +R+S
Sbjct: 106 AYGQTGTGKTHTMVG-NETAELKSSWEDDSDIGIIPRALSHLFDELRMME--VEYTMRIS 162
Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
Y E+YNEE+ DLLS + + I ++ K+ V ++ L ++ DD+
Sbjct: 163 YLELYNEELCDLLSTD--------DTTKIRIFDDSTKKG---SVIIQGLEEIPVHSKDDV 211
Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
K++ G + R T MN SSRSH +FSI++ R G E + ++
Sbjct: 212 YKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI-------RENG------IEGEDMLK 258
Query: 307 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
+G+L+LVDLAGSE +K G G R++E IN SL TLG VI+ALVD + H+PYR SK
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRESK 317
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
LTR+LQ+SLGG +KT + AT+ P + EET+STL YA R K I NK VNQ
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 235 bits (599), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 217/413 (52%), Gaps = 69/413 (16%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
+V+V VRVRP + +E I + + T+ NP E PK+F+FD YS
Sbjct: 21 SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 73
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+H P+ + A+ KQ +Y + ++ G+N IFA
Sbjct: 74 ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 111
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
YGQTG GK++TM G + +GIIP +F I ++++ + V VSY EIY E +
Sbjct: 112 YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 170
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
RDLL+ KNK L V+E P +G YV+DLS + +D++ +M GN
Sbjct: 171 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 216
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K R+V AT MNE SSRSHA+F+II T E ++ ++ LVD
Sbjct: 217 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 264
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
LAGSER TGA G RLKE + IN SL+TLG VISAL + K IPYR+
Sbjct: 265 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 324
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N VN
Sbjct: 325 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 234 bits (598), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 217/413 (52%), Gaps = 69/413 (16%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
+V+V VRVRP + +E I + + T+ NP E PK+F+FD YS
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+H P+ + A+ KQ +Y + ++ G+N IFA
Sbjct: 58 ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
YGQTG GK++TM G + +GIIP +F I ++++ + V VSY EIY E +
Sbjct: 96 YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
RDLL+ KNK L V+E P +G YV+DLS + +D++ +M GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K R+V AT MNE SSRSHA+F+II T E ++ ++ LVD
Sbjct: 201 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
LAGSER TGA G RLKE + IN SL+TLG VISAL + K IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 416
S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N VN
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 217/414 (52%), Gaps = 69/414 (16%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
+V+V VRVRP + +E I + + T+ NP E PK+F+FD YS
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+H P+ + A+ KQ +Y + ++ G+N IFA
Sbjct: 58 ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
YGQTG GK++TM G + +GIIP +F I ++++ + V VSY EIY E +
Sbjct: 96 YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
RDLL+ KNK L V+E P +G YV+DLS + +D++ +M GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K R+V AT MNE SSRSHA+F+II T E ++ ++ LVD
Sbjct: 201 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
LAGSER TGA G RLKE + IN SL+TLG VISAL + K IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N VN
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 217/414 (52%), Gaps = 69/414 (16%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
+V+V VRVRP + +E I + + T+ NP E PK+F+FD YS
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCI--IQMSGSTTTIVNPK-QPKETPKSFSFD----YSYW 57
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+H P+ + A+ KQ +Y + ++ G+N IFA
Sbjct: 58 ---------------SHTSPEDINY-----ASQKQ--VYRDIGEEMLQHAFEGYNVCIFA 95
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA-KADESVKFLVRVSYFEIYNEEI 195
YGQTG GK++TM G + +GIIP +F I ++++ + V VSY EIY E +
Sbjct: 96 YGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 154
Query: 196 RDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
RDLL+ KNK L V+E P +G YV+DLS + +D++ +M GN
Sbjct: 155 RDLLNPKNKGN--------------LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K R+V AT MNE SSRSHA+F+II T E ++ ++ LVD
Sbjct: 201 KPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE------------KVSKISLVD 248
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GKCTHIPYRN 363
LAGSER TGA G RLKE + IN SL+TLG VISAL + K IPYR+
Sbjct: 249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308
Query: 364 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N VN
Sbjct: 309 SVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 198/320 (61%), Gaps = 34/320 (10%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
+ F F V ++ Q +Y +P+++ GFN T+FAYGQTG+GKT+TM G +V
Sbjct: 50 RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVAS 108
Query: 157 L----KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLL---SKNKDQCLEV 209
L +GI+P + A F I + D + LV VSY E+Y EE RDLL + ++D L
Sbjct: 109 LLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
ER ++ V C VKE V V+ L D++ ++ +GN R GAT +N +SS
Sbjct: 168 DERGNV-VLC-GVKE-----VDVEGL--------DEVLSLLEMGNAARHTGATHLNHLSS 212
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
RSH +F++ +E G+ + RL A G + + + H VDLAGSER KTG++G+
Sbjct: 213 RSHTVFTVTLEQR----GRAPS----RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE 264
Query: 330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 387
RLKE+ +IN SL LGNVISAL D + +HIPYR+SK+TRIL+DSLGGN+KTVM A V
Sbjct: 265 RLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVS 324
Query: 388 PASYNYEETISTLRYASRVK 407
P+S +++ET++TL YASR +
Sbjct: 325 PSSSDFDETLNTLNYASRAQ 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 202/353 (57%), Gaps = 59/353 (16%)
Query: 97 KTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149
K+FTFD F ++ + Q +Y+ +D G++ IFAYGQTG+GK++TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 150 GVNNVPELKGIIPNSFAHIFGHIAKA-DES--VKFLVRVSYFEIYNEEIRDLLSKNKDQC 206
G P+ G+IP + +F IA A DE+ + + V+VSYFE+YNE +RDLL+
Sbjct: 156 GT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAP----- 207
Query: 207 LEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNE 266
V +P Y L+V+E P G YVKDL+ +++ + M +G+ +R+V +T MN+
Sbjct: 208 -VVPNKPP---YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMND 263
Query: 267 VSSRSHAIFSIII-ETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325
SSRSHA+F+I++ + L TT + R+ LVDLAGSER T
Sbjct: 264 TSSRSHAVFTIMLKQIHHDLETDDTTERS-------------SRIRLVDLAGSERAKSTE 310
Query: 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTH---------------------IPYRNS 364
A+GQRL+E S IN SL+TLG VI+AL D K + +PYR+S
Sbjct: 311 ATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDS 370
Query: 365 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
LT +L+DSLGGNSKT M A + P +Y+ET+STLRYA + K+I +A VNQ
Sbjct: 371 VLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 209/403 (51%), Gaps = 52/403 (12%)
Query: 9 VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFD 68
V E + +++V VRVRP + KE AG + V +++ I V +P
Sbjct: 3 VTEEDLCHHMKVVVRVRPENTKEKAAGFHKV--VHVVDKHILVFDPKQEE---------- 50
Query: 69 TVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLS 128
V +G T F FD VFD S Q +++ T +PI+ L+
Sbjct: 51 -------VSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN 103
Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
G+N T+ AYG TG GKT TM G + P G++ + H++ + + E VSY
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGSADEP---GVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160
Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
E+YNE+IRDLL V P L V+E GV V L+ + +++++
Sbjct: 161 EVYNEQIRDLL---------VNSGP------LAVREDTQKGVVVHGLTLHQPKSSEEILH 205
Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
++ GNKNR+ T MN SSRSHA+F I + A +V++
Sbjct: 206 LLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK-------------TASINQNVRIA 252
Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKL 366
++ L+DLAGSER + +GA G R E + IN SL LGNVI+AL D K HIPYRNSKL
Sbjct: 253 KMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312
Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
TR+L+DSLGGN +T+M A V P+S Y++T +TL+YA+R K I
Sbjct: 313 TRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 194/320 (60%), Gaps = 34/320 (10%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
+ F F V ++ Q +Y +P+++ GFN T+FAYGQTG+GKT+TM G +V
Sbjct: 50 RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVAS 108
Query: 157 L----KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLL---SKNKDQCLEV 209
L +GI+P + A F I + D + LV VSY E+Y EE RDLL + ++D L
Sbjct: 109 LLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
ER ++ V C VKE V V+ L D++ ++ +GN R GAT +N +SS
Sbjct: 168 DERGNV-VLC-GVKE-----VDVEGL--------DEVLSLLEMGNAARHTGATHLNHLSS 212
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
RSH +F++ + K+ RL A G + + + H VDLAGSER KTG++G+
Sbjct: 213 RSHTVFTVTL--------KQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE 264
Query: 330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 387
KE+ +IN SL LGNVISAL D + ++IPYR+SK+TRIL+DSLGGN+KTVM A V
Sbjct: 265 LRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVS 324
Query: 388 PASYNYEETISTLRYASRVK 407
P+S +++ET++TL YASR +
Sbjct: 325 PSSSDFDETLNTLNYASRAQ 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 198/393 (50%), Gaps = 69/393 (17%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RV RVRP++K++ G E TFD S +
Sbjct: 5 NIRVIARVRPVTKED------------------------GEGPEATNAVTFDA-DDDSII 39
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
LL+ P +F D VF + Q D++ E + +V + GFN IFA
Sbjct: 40 HLLH------------KGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFA 86
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIR 196
YGQTG GKT+TMEG P GI + +F + + ++ + VS EIYNE +R
Sbjct: 87 YGQTGAGKTYTMEGTAENP---GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLR 143
Query: 197 DLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256
DLL K + LE++ PD +YV L+ + + DD+ K+ G+ N
Sbjct: 144 DLLGKEPQEKLEIRLCPD-----------GSGQLYVPGLTEFQVQSVDDINKVFEFGHTN 192
Query: 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLA 316
R+ T +NE SSRSHA+ + + G RTTG +L+LVDLA
Sbjct: 193 RTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTG----------------KLNLVDLA 236
Query: 317 GSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGG 376
GSER K+GA G RL+EA IN SLS LG+VI+AL + H+P+RNSKLT +LQDSL G
Sbjct: 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQDSLSG 295
Query: 377 NSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
+SKT+M V P N ET+ +L++A RV+ +
Sbjct: 296 DSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 190/333 (57%), Gaps = 32/333 (9%)
Query: 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN 153
+ K +D VFD N+ Q D++ +T + +V + G+N IFAYGQTG+GKTFT+ G ++
Sbjct: 44 DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS 102
Query: 154 VPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERP 213
P G+ P + + +F + K F ++ E+Y + + DLL + + L+
Sbjct: 103 NP---GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK----- 154
Query: 214 DIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHA 273
L++K+ V V++++ + ++++ I+ G++ R T MNE SSRSH
Sbjct: 155 ------LDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHL 208
Query: 274 IFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333
I S+IIE+++ L +A + G+L VDLAGSER K+G++G +LKE
Sbjct: 209 IVSVIIESTN-------------LQTQA---IARGKLSFVDLAGSERVKKSGSAGNQLKE 252
Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
A IN SLS LG+VISAL G HIPYRN KLT ++ DSLGGN+KT+M + PA N
Sbjct: 253 AQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNL 311
Query: 394 EETISTLRYASRVKKICNKARVNQDPKDALLIK 426
+ET ++L YASRV+ I N N K+ +K
Sbjct: 312 DETHNSLTYASRVRSIVNDPSKNVSSKEVARLK 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 205/394 (52%), Gaps = 71/394 (18%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
+RV+ R+RPL++KES + T TVD
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLT---------------------------------TVD 41
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
TV++P + K +D VFD + Q DI+ +T + +V + G+N IFAY
Sbjct: 42 EF----TVEHPW--KDDKRKQHIYDRVFDMRASQDDIFEDT-KYLVQSAVDGYNVCIFAY 94
Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRD 197
GQTG+GKTFT+ G + P G+ P + +F + + + F ++ E+Y + + D
Sbjct: 95 GQTGSGKTFTIYGHESNP---GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVD 151
Query: 198 LLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
LL + L+ LE+K+ V+V++++ + +++ I+ G++ R
Sbjct: 152 LLLPKSARRLK-----------LEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERR 200
Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317
V T MNE SSRSH I S++IE+ + + Q + + G+L VDLAG
Sbjct: 201 HVSGTNMNEESSRSHLILSVVIES---------------IDLQTQSAAR-GKLSFVDLAG 244
Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGN 377
SER K+G++G +LKEA IN SLS LG+VI AL G HIPYRN KLT ++ DSLGGN
Sbjct: 245 SERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLTMLMSDSLGGN 303
Query: 378 SKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
+KT+M V PA N +ET ++L YASRV+ I N
Sbjct: 304 AKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 175/314 (55%), Gaps = 29/314 (9%)
Query: 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPEL 157
+F D V S+ L +Y A+ +V + L G+NGTI YGQTG GKT+TM G +
Sbjct: 73 SFKLDGVLHDASQDL-VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 158 KGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG- 216
+GI+P + +F I + VRVSY EIYNE + DLLS P +G
Sbjct: 132 RGILPRALQQVFRMIEERPTHA-ITVRVSYLEIYNESLFDLLST----------LPYVGP 180
Query: 217 -VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
V + + E P GV++K LS ++ + +D ++ G NR + + MN+ SSRSH IF
Sbjct: 181 SVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 239
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
+I +E S RT E + + +++LVDLAGSER K+G+ GQ LKEA+
Sbjct: 240 TIYLEAHS-----RTLSEEKYITS---------KINLVDLAGSERLGKSGSEGQVLKEAT 285
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
IN SLS L I AL D K HIP+R KLT L+DSLGGN V+ + + EE
Sbjct: 286 YINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEE 345
Query: 396 TISTLRYASRVKKI 409
T+S+LR+ASR+K +
Sbjct: 346 TLSSLRFASRMKLV 359
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 209/401 (52%), Gaps = 57/401 (14%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF RVRP+ E G++ + G +PP + S
Sbjct: 23 NIRVFCRVRPVLPGEPTP----------PPGLLLFPSGPGGPSDPPTRLSL------SRS 66
Query: 77 DLLNGIITVKNPAGSAHEPPK-TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
D G ++ G+ PP+ F+FD VF S Q +++ E A +V L G+ IF
Sbjct: 67 DERRGTLS-----GAPAPPPRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIF 120
Query: 136 AYGQTGTGKTFTMEG-VNNVPELKGIIPNSFAHIFGHIAK--ADESVKFLVRVSYFEIYN 192
AYGQTG+GKTFTMEG P+L+G+IP + H+F +A+ + + + SY EIYN
Sbjct: 121 AYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLF-SVAQELSGQGWTYSFVASYVEIYN 179
Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD-DMEKIMS 251
E +RDLL+ R G C + P + Y+ + + +++ ++
Sbjct: 180 ETVRDLLATGT--------RKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLH 231
Query: 252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLH 311
L +NR+V TA NE SSRSH++F + I +GE+ ++G L
Sbjct: 232 LARQNRAVARTAQNERSSRSHSVFQLQI-----------SGEH-----SSRGLQCGAPLS 275
Query: 312 LVDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 367
LVDLAGSER A G +RL+E IN SLSTLG VI AL + K +H+PYRNSKLT
Sbjct: 276 LVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN-KESHVPYRNSKLT 334
Query: 368 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
+LQ+SLGG++K +M + P N E++++LR+AS+V +
Sbjct: 335 YLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 203/401 (50%), Gaps = 78/401 (19%)
Query: 17 NVRVFVRVRP-LSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
N+RV+ R+RP L ++ + H+ + D NG + G++ P
Sbjct: 29 NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIP------------- 75
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
F FD +FD +I+ E + ++ L G+N IF
Sbjct: 76 -----------------------FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIF 111
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEE 194
AYGQTG+GKT+TM + GI+P + HIF I K A + V + EIYNE
Sbjct: 112 AYGQTGSGKTYTMLNPGD-----GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNEN 166
Query: 195 IRDLL------SKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDME 247
I DLL +N D+ + K E++ ++ Y+ +++ + ++ D ++
Sbjct: 167 IVDLLRSGAPSQENNDRNADSKH---------EIRHDQELKTTYITNITTCVLDSRDTVD 217
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
K++ NK RS +TA NE SSRSH+IF I +E G+N E G
Sbjct: 218 KVLKRANKLRSTASTAANEHSSRSHSIFIIHLE-----------GKN-----EGTGEKSQ 261
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 365
G L+LVDLAGSER + G+RL+E IN SLS LG+VI AL DG+ HIP+RNSK
Sbjct: 262 GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSK 321
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
LT +LQ SL G+SKT+M + PA+ + ETI++LR+AS+V
Sbjct: 322 LTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 204/396 (51%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV++R+RP K + SD +++ D +G+ +++
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 97
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 98 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAI 144
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 145 FAYGQTGSGKTFTMLNPGD-----GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNE 199
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + + +++M E I+
Sbjct: 200 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSVKLESEEMVEIILKK 254
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SSRSH+IF I +G N + A + G+ L+L
Sbjct: 255 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 298
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 299 VDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLL 358
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 359 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 202/396 (51%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV+ R+RP K + SD +++ D +G+ +++
Sbjct: 15 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 52
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 53 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 99
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 100 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 154
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + +++M E I+
Sbjct: 155 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 209
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SSRSH+IF I +G N + A + G+ L+L
Sbjct: 210 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 253
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 254 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 313
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 314 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 202/396 (51%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV+ R+RP K + SD +++ D +G+ +++
Sbjct: 3 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 40
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 41 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 87
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 88 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 142
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + +++M E I+
Sbjct: 143 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 197
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SSRSH+IF I +G N + A + G+ L+L
Sbjct: 198 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 241
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 242 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 301
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 302 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV+ R+RP K + SD +++ D +G+ +++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 42 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 89 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + +++M E I+
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SSRSH+IF I +G N + A + G+ L+L
Sbjct: 199 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGS R + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 243 VDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV+ R+RP K + SD +++ D +G+ +++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 42 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 89 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + +++M E I+
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SSRSH+IF I +G N + A + G+ L+L
Sbjct: 199 ANKLRSTASTASNEHSSRSHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGSER + G RL+E I SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 243 VDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 201/396 (50%), Gaps = 67/396 (16%)
Query: 17 NVRVFVRVRPLSK--KESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYS 74
N+RV+ R+RP K + SD +++ D +G+ +++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSME---------------------- 41
Query: 75 TVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTI 134
+ ++N A HE F FD +FD +D++ E + +V L G+N I
Sbjct: 42 -------VTKIQNTA-QVHE----FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCI 88
Query: 135 FAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNE 193
FAYGQTG+GKTFTM + GIIP++ +HIF I K + + V + EIYNE
Sbjct: 89 FAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143
Query: 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM-EKIMSL 252
I DLL + + KE IG+ E++ + +++M E I+
Sbjct: 144 NIVDLLRSDNNN----KEDTSIGLKH-EIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
NK RS +TA NE SS SH+IF I +G N + A + G+ L+L
Sbjct: 199 ANKLRSTASTASNEHSSASHSIFII-----------HLSGSNAKTGAHSYGT-----LNL 242
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRIL 370
VDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +L
Sbjct: 243 VDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLL 302
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
Q SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 170/328 (51%), Gaps = 36/328 (10%)
Query: 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN 152
H+ + FD + S Q DIY + +PI+ +L G N ++ AYG TG GKT TM G
Sbjct: 61 HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS- 119
Query: 153 NVPELKGIIPNSFAHIFGHIAKADESVK---FLVRVSYFEIYNEEIRDLLSKNKDQCLEV 209
PE G+IP + + + + V +SY EIY E++ DLL
Sbjct: 120 --PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL---------- 167
Query: 210 KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSS 269
D L ++E + + LS ++ D E+ ++NR+VGAT +N+ SS
Sbjct: 168 ----DPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSS 223
Query: 270 RSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329
RSHA+ + ++ L R + G+L+L+DLAGSE +TG G
Sbjct: 224 RSHAVLLVKVDQRERLAPFRQ---------------REGKLYLIDLAGSEDNRRTGNKGL 268
Query: 330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPA 389
RLKE+ IN SL LG V+ AL G +PYR+SKLTR+LQDSLGG++ +++ A + P
Sbjct: 269 RLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPE 327
Query: 390 SYNYEETISTLRYASRVKKICNKARVNQ 417
Y +T+S L +A+R K++ N+ N+
Sbjct: 328 RRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 200/391 (51%), Gaps = 72/391 (18%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF R+RP + E + T+T+ STV
Sbjct: 68 NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 98
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+L + K+ G + F+FD VF S Q DI+ E P++ L G+N IFA
Sbjct: 99 ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 152
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
YGQTG+GKT+TM+GV PE G+IP + +F I + ++ ++ ++ EIYNE +
Sbjct: 153 YGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 209
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLLS N+ + +E++ + + DI YV +++ + + + +M
Sbjct: 210 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 257
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR+ +TA NE SSRSHA+ T L G+ AE Q + +G ++LVDL
Sbjct: 258 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 301
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKLT +L SLG
Sbjct: 302 AGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 356
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
GNSKT+M V P ++E++ +LR+A+ V
Sbjct: 357 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 387
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 201/392 (51%), Gaps = 72/392 (18%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+N+RVF R+RP + E + T+T+ ST
Sbjct: 59 DNIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DEST 89
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
V+L + K+ G + F+FD VF S Q DI+ E P++ L G+N IF
Sbjct: 90 VELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIF 143
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEE 194
AYGQTG+GKT+TM+GV PE G+IP + +F I + ++ ++ ++ EIYNE
Sbjct: 144 AYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEV 200
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
+ DLLS N+ + +E++ + + DI YV +++ + + + +M
Sbjct: 201 LYDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAK 248
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
NR+ +TA NE SSRSHA+ T L G+ AE Q + +G ++LVD
Sbjct: 249 MNRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVD 292
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
LAGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKLT +L SL
Sbjct: 293 LAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSL 347
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRV 406
GGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASV 379
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 38/311 (12%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
+ F+FD VF S Q DI+ E P++ L G+N IFAYGQTG+GKT+TM+GV PE
Sbjct: 100 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV---PE 155
Query: 157 LKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDI 215
G+IP + +F I + ++ ++ ++ EIYNE + DLLS N+ + +E++
Sbjct: 156 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS-NEQKDMEIR----- 209
Query: 216 GVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
+ + DI YV +++ + + + +M NR+ +TA NE SSRSHA+
Sbjct: 210 ----MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV- 262
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
T L G+ AE Q + +G ++LVDLAGSE + + R+ E
Sbjct: 263 -----TKLELIGRH---------AEKQ-EISVGSINLVDLAGSE----SPKTSTRMTETK 303
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
IN SLS L NVI AL+ K HIPYRNSKLT +L SLGGNSKT+M V P ++E
Sbjct: 304 NINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 362
Query: 396 TISTLRYASRV 406
++ +LR+A+ V
Sbjct: 363 SVKSLRFAASV 373
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 200/391 (51%), Gaps = 72/391 (18%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF R+RP + E + T+T+ STV
Sbjct: 57 NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 87
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+L + K+ G + F+FD VF S Q DI+ E P++ L G+N IFA
Sbjct: 88 ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 141
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
YGQ+G+GKT+TM+GV PE G+IP + +F I + ++ ++ ++ EIYNE +
Sbjct: 142 YGQSGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 198
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLLS N+ + +E++ + + DI YV +++ + + + +M
Sbjct: 199 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 246
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR+ +TA NE SSRSHA+ T L G+ AE Q + +G ++LVDL
Sbjct: 247 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 290
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKLT +L SLG
Sbjct: 291 AGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
GNSKT+M V P ++E++ +LR+A+ V
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 199/391 (50%), Gaps = 72/391 (18%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF R+RP + E + T+T+ STV
Sbjct: 57 NIRVFCRIRPPLESEENRMCC--------------------------TWTYH---DESTV 87
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+L + K+ G + F+FD VF S Q DI+ E P++ L G+N IFA
Sbjct: 88 ELQSIDAQAKSKMGQ-----QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFA 141
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI-AKADESVKFLVRVSYFEIYNEEI 195
YGQTG+GKT+TM+GV PE G+IP + +F I + ++ ++ ++ EIYNE +
Sbjct: 142 YGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 198
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLLS N+ + +E++ + + DI YV +++ + + + +M
Sbjct: 199 YDLLS-NEQKDMEIR---------MAKNNKNDI--YVSNITEETVLDPNHLRHLMHTAKM 246
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR+ +TA NE SSRSHA+ T L G+ AE Q + +G ++LVDL
Sbjct: 247 NRATASTAGNERSSRSHAV------TKLELIGRH---------AEKQ-EISVGSINLVDL 290
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSE + + R+ E I SLS L NVI AL+ K HIPYRNSKLT +L SLG
Sbjct: 291 AGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLG 345
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRV 406
GNSKT+M V P ++E++ +LR+A+ V
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 196/398 (49%), Gaps = 70/398 (17%)
Query: 17 NVRVFVRVRP-LSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
N+RV+ RVRP L + D H+ I + G ++ T
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSL-----------------------T 42
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
++ G I N F FD +F+ + +I+ E R +V L G+N IF
Sbjct: 43 INRNEGRILSYN-----------FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIF 90
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADE-SVKFLVRVSYFEIYNEE 194
AYGQTG+GKT+TM + G+IP + +HIF A E + + Y EIYNE
Sbjct: 91 AYGQTGSGKTYTMLNAGD-----GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNET 145
Query: 195 IRDLLS--KNKDQCLEV--KERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM 250
I DLL K+ D E+ ++ DI + G Y+ +++ + ++ I+
Sbjct: 146 ILDLLRDFKSHDNIDEILDSQKHDIR------HDHEKQGTYITNVTRMKMTSTSQVDTIL 199
Query: 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRL 310
+K RS AT NE SSRSH++F + I G TGE G+L
Sbjct: 200 KKASKMRSTAATRSNERSSRSHSVFMVHIN-----GRNLHTGE-----------TSQGKL 243
Query: 311 HLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTR 368
+LVDLAGSER + +G+RL+E IN SLS LG+VI AL D +IP+RNSKLT
Sbjct: 244 NLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTY 303
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 406
+LQ SL G+SKT+M + P + ET+++LR+AS+V
Sbjct: 304 LLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 171/322 (53%), Gaps = 41/322 (12%)
Query: 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELK 158
F FD +F+ ++ E ++ ++ L G N +FAYGQTG+GKTFTM N
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN----- 485
Query: 159 GIIPNSFAHIFGHIAKADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGV 217
G+IP S IF I + E + VR + EIYNE I DLL+ D + + + D
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHD--- 542
Query: 218 YCLEVKERPDIG--VYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIF 275
DI V ++S + + I++ NK RS AT N+ SSRSH+IF
Sbjct: 543 ---------DIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF 593
Query: 276 SIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335
I ++ + L + + G L+L+DLAGSER + A G RLKE
Sbjct: 594 IIDLQGYNSLTKESS----------------YGTLNLIDLAGSERLNNSRAEGDRLKETQ 637
Query: 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
IN SLS LG+VI +L +H+PYRNSKLT +L+ SLGGNSKT+M + P + + E
Sbjct: 638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNE 697
Query: 396 TISTLRYASRVKKICNKARVNQ 417
TI++LR+A++V N R+N+
Sbjct: 698 TINSLRFATKV----NNTRINK 715
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 195/421 (46%), Gaps = 92/421 (21%)
Query: 5 ELSEVAETEEIENVR--VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPP 62
E S + T+ IE R V VR RPL+K+E +D+ +V P
Sbjct: 58 ECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISV------------------PS 99
Query: 63 KTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPI 122
K P VDL + + + F FD FD + +Y TARP+
Sbjct: 100 KCLLL-VHEPKLKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPL 146
Query: 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL 182
V + G T FAYGQTG+GKT TM G +L G N+ I+ A A V L
Sbjct: 147 VQTIFEGGKATCFAYGQTGSGKTHTMGG-----DLSGKSQNASKGIY---AMASRDVFLL 198
Query: 183 ------------VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGV 230
V V++FEIYN ++ DLL+K L V E V
Sbjct: 199 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQV 243
Query: 231 YVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRT 290
V L Y+ ADD+ K++++G+ R+ G T N SSRSHA F I++ T L GK
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK-- 301
Query: 291 TGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVIS 349
LVDLAG+ER A T ++ ++ + E ++IN SL L I
Sbjct: 302 -------------------FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 342
Query: 350 ALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
AL K H P+R SKLT++L+DS +G NS+T M A + P + E T++TLRYA RVK+
Sbjct: 343 ALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKE 401
Query: 409 I 409
+
Sbjct: 402 L 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 198/421 (47%), Gaps = 92/421 (21%)
Query: 5 ELSEVAETEEIENVR--VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPP 62
E + T+ IE R V VR RPL+K+E +D+ ++ P
Sbjct: 38 ECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISI------------------PS 79
Query: 63 KTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPI 122
K P VDL + + + F FD FD + +Y TARP+
Sbjct: 80 KCLLL-VHEPKLKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPL 126
Query: 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL 182
V + G T FAYGQTG+GKT TM G +L G N+ I+ A A V L
Sbjct: 127 VQTIFEGGKATCFAYGQTGSGKTHTMGG-----DLSGKAQNASKGIY---AMASRDVFLL 178
Query: 183 ------------VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGV 230
V V++FEIYN ++ DLL+K L V E V
Sbjct: 179 KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK---------------LRVLEDGKQQV 223
Query: 231 YVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRT 290
V L ++ N+ADD+ K++ +G+ R+ G T N SSRSHA F II+
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL----------- 272
Query: 291 TGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVIS 349
A+G + G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I
Sbjct: 273 ---------RAKGRMH-GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 322
Query: 350 ALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
AL K H P+R SKLT++L+DS +G NS+T M AT+ P + E T++TLRYA RVK+
Sbjct: 323 ALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 381
Query: 409 I 409
+
Sbjct: 382 L 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 188/406 (46%), Gaps = 90/406 (22%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
+ V VR RPL+K+E +D+ +V P K P VD
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISV------------------PSKCLLL-VHEPKLKVD 41
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
L + + + F FD FD + +Y TARP+V + G T FAY
Sbjct: 42 L------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAY 89
Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFL------------VRV 185
GQTG+GKT TM G +L G N+ I+ A A V L V V
Sbjct: 90 GQTGSGKTHTMGG-----DLSGKSQNASKGIY---AMASRDVFLLKNQPRYRNLNLEVYV 141
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
++FEIYN ++ DLL+K L V E V V L Y+ ADD
Sbjct: 142 TFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQVQVVGLQEYLVTCADD 186
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
+ K++++G+ R+ G T N SSRSHA F I++ T L GK
Sbjct: 187 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK----------------- 229
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R S
Sbjct: 230 ----FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 284
Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
KLT++L+DS +G NS+T M A + P + E T++TLRYA RVK++
Sbjct: 285 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 74/396 (18%)
Query: 20 VFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLL 79
V VR RPL+KKE+ +D+ T+ + ++ HEP + VDL
Sbjct: 93 VCVRKRPLNKKETQMKDLDVITIPSKDVVM--------VHEPKQK-----------VDL- 132
Query: 80 NGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQ 139
+ + +TF FD FD ++ +Y TARP+V+ + T FAYGQ
Sbjct: 133 -----------TRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQ 181
Query: 140 TGTGKTFTMEG---VNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNEEI 195
TG+GKT TM G N KGI + +F + K + + ++ V ++FEIY+ ++
Sbjct: 182 TGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKV 241
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLL N+ L V E V + ++ER +D+ K++ +GN
Sbjct: 242 FDLL--NRKTKLRVLEDGKQQVQVVGLQERE-------------VKCVEDVLKLIDIGNS 286
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
R+ G T+ N SSRSHA+F II+ L GK L+DL
Sbjct: 287 CRTSGQTSANAHSSRSHAVFQIILRRKGKLHGK---------------------FSLIDL 325
Query: 316 AGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS- 373
AG+ER A T ++ ++ + E ++IN SL L I AL K H P+R SKLT++L+DS
Sbjct: 326 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSF 384
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
+G NS+T M AT+ P + E T++TLRYA+RVK++
Sbjct: 385 IGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 153/317 (48%), Gaps = 50/317 (15%)
Query: 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN----V 154
F FD F A Q ++Y P+VDK+L GF T AYGQTGTGK+++M G+ +
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEIL 121
Query: 155 PELKGIIPNSFAHIFGHIAKADESVKFLVRV--SYFEIYNEEIRDLLSKNKDQCLEVKER 212
PE GI+P + IF + E+ K ++V S+ EIYNE+ DLL
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM------- 174
Query: 213 PDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSH 272
P + C P ++ D+ I+ LG +NR V T MN SSRSH
Sbjct: 175 PMVAARCQRCTCLP-------------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSH 221
Query: 273 AIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332
AI +I +++ + R+++VDLAGSE +TG G +
Sbjct: 222 AIVTIHVKSKT----------------------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYN 392
E INL L ++ V+ ++ G T IPYR+S LT +LQ SL S A + P +
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 393 YEETISTLRYASRVKKI 409
ET+STLR+ + KK+
Sbjct: 319 LSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 151/315 (47%), Gaps = 50/315 (15%)
Query: 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN----V 154
F FD F A Q ++Y P+VDK+L GF T AYGQTGTGK+++M G+ +
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEIL 121
Query: 155 PELKGIIPNSFAHIFGHIAKADESVKFLVRV--SYFEIYNEEIRDLLSKNKDQCLEVKER 212
PE GI+P + IF + E+ K ++V S+ EIYNE+ DLL
Sbjct: 122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM------- 174
Query: 213 PDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSH 272
P + C P ++ D+ I+ LG +NR V T MN SSRSH
Sbjct: 175 PMVAARCQRCTCLP-------------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSH 221
Query: 273 AIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332
AI +I +++ + R+++VDLAGSE +TG G +
Sbjct: 222 AIVTIHVKSKT----------------------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYN 392
E INL L ++ V+ ++ G T IPYR+S LT +LQ SL S A + P +
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318
Query: 393 YEETISTLRYASRVK 407
ET+STLR+ + K
Sbjct: 319 LSETLSTLRFGTSAK 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 124/224 (55%), Gaps = 30/224 (13%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPE 156
K + FD V N+ Q +YN A+ IV VL G+NGTIFAYGQT +GKT TMEG + P+
Sbjct: 44 KPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQ 103
Query: 157 LKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIG 216
L GIIP IF HI DE+++F ++VSYFEIY ++IRDLL +K
Sbjct: 104 LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN----------- 152
Query: 217 VYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFS 276
L V E + YVK + ++ +++ ++ G NR V T MNE SSRSH+IF
Sbjct: 153 ---LAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFL 209
Query: 277 IIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER 320
I I+ + K+ + G+L+LVDLAGSE+
Sbjct: 210 INIKQENVETEKKLS----------------GKLYLVDLAGSEK 237
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 183/394 (46%), Gaps = 70/394 (17%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
++V VR RPLS+ E DI ITVKN T D P VD
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDI---------ITVKNNC--------TLYIDE--PRYKVD 42
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP-IVDKVLSGFNGTIFA 136
+ I HE F D VFD +Y T +P I+D +G + FA
Sbjct: 43 MTKYI--------ERHE----FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90
Query: 137 YGQTGTGKTFTMEGVN--NVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
YGQTG+GKT+TM G + GI + IF + D+ + +S++EIY +
Sbjct: 91 YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
+ DLL K K V LE ++ V VKDL +++ M G
Sbjct: 151 LYDLLQKRK------------MVAALENGKKE---VVVKDLKILRVLTKEELILKMIDGV 195
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
R +G + N+ SSRSHAI +I ++ + + +G++ +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLK-------------------DINKNTSLGKIAFID 236
Query: 315 LAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
LAGSER A T + ++ + + + IN SL L I A+ D HIP+R+S+LT++L+D
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-DSDKNHIPFRDSELTKVLRDI 295
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
G SK++M A + P E+T++TLRY+SRVK
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%)
Query: 338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 397
N SLS LGNVISAL +G TH+PYR+SK+TRILQDSLGGN +T + P+ +N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 398 STLRYASRVKKICNKARVN 416
STL + R K I N VN
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 55/83 (66%)
Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
A IN SLS LGNVISAL +G TH+PYR+SK+TRILQDSL GN +T + P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 394 EETISTLRYASRVKKICNKARVN 416
ET STL + R K I N VN
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVN 83
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
Length = 455
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
+R A A + A+K+ LS TLG++ + V +PY ++TRI+QD +
Sbjct: 31 GDRLAGVAAESAEERVAAKVVLSKXTLGDLRNNPV------VPYETDEVTRIIQDQV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,857,933
Number of Sequences: 62578
Number of extensions: 710061
Number of successful extensions: 1623
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 107
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)