Query psy11229
Match_columns 705
No_of_seqs 491 out of 2050
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:27:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 3E-113 5E-118 949.7 30.3 550 14-633 3-574 (574)
2 KOG0243|consensus 100.0 1.2E-96 3E-101 846.9 48.4 373 11-443 44-425 (1041)
3 KOG0245|consensus 100.0 2.3E-95 5E-100 819.9 31.5 367 14-444 2-383 (1221)
4 KOG0240|consensus 100.0 7E-90 1.5E-94 742.7 43.1 350 14-432 5-355 (607)
5 PLN03188 kinesin-12 family pro 100.0 6.7E-85 1.5E-89 755.7 39.0 316 97-438 132-469 (1320)
6 KOG0241|consensus 100.0 4.1E-85 9E-90 723.3 34.0 368 15-441 3-383 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.7E-83 3.7E-88 694.4 36.5 325 16-409 1-337 (337)
8 KOG0242|consensus 100.0 1.5E-84 3.3E-89 746.9 30.0 359 15-442 5-365 (675)
9 cd01370 KISc_KIP3_like Kinesin 100.0 8.3E-83 1.8E-87 689.3 36.2 336 17-409 1-338 (338)
10 cd01371 KISc_KIF3 Kinesin moto 100.0 2.2E-81 4.7E-86 677.5 37.3 332 16-409 1-333 (333)
11 cd01368 KISc_KIF23_like Kinesi 100.0 8.3E-81 1.8E-85 675.2 36.4 340 16-407 1-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.5E-80 7.6E-85 673.9 37.9 341 16-416 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.2E-79 2.7E-84 669.0 37.9 341 16-418 2-352 (352)
14 cd01367 KISc_KIF2_like Kinesin 100.0 7.7E-79 1.7E-83 654.5 35.1 321 16-407 1-322 (322)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.6E-78 5.7E-83 651.9 37.2 324 16-409 2-325 (325)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 1.2E-77 2.5E-82 651.2 35.6 335 17-410 2-341 (341)
17 cd01376 KISc_KID_like Kinesin 100.0 2.8E-77 6.1E-82 641.8 36.5 315 17-407 1-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 5.1E-77 1.1E-81 640.8 36.4 320 17-409 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 8.4E-77 1.8E-81 641.8 36.3 334 17-407 1-334 (334)
20 KOG0247|consensus 100.0 2.6E-75 5.7E-80 643.2 38.0 357 8-420 23-447 (809)
21 KOG0239|consensus 100.0 1.1E-76 2.5E-81 679.2 25.3 333 15-415 313-646 (670)
22 cd01366 KISc_C_terminal Kinesi 100.0 1.8E-74 3.9E-79 623.3 37.9 326 15-411 1-328 (329)
23 smart00129 KISc Kinesin motor, 100.0 1.5E-73 3.2E-78 617.7 38.1 333 17-416 1-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 1.9E-71 4E-76 599.7 37.8 326 17-407 1-328 (328)
25 KOG0244|consensus 100.0 2.5E-73 5.3E-78 645.0 22.2 348 24-442 1-350 (913)
26 PF00225 Kinesin: Kinesin moto 100.0 3.8E-72 8.3E-77 606.7 27.5 330 23-409 1-335 (335)
27 KOG0246|consensus 100.0 2.1E-70 4.5E-75 589.2 29.1 334 15-414 207-546 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 6.1E-62 1.3E-66 555.4 37.2 289 96-417 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.7E-50 5.8E-55 400.7 19.0 179 114-388 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.9 4.5E-08 9.7E-13 113.2 -14.6 214 96-352 352-566 (568)
31 COG1579 Zn-ribbon protein, pos 96.6 0.47 1E-05 49.0 21.4 45 606-650 161-205 (239)
32 PF10473 CENP-F_leu_zip: Leuci 96.6 0.37 8.1E-06 45.8 18.8 84 475-569 8-91 (140)
33 PF09726 Macoilin: Transmembra 96.3 0.25 5.5E-06 58.9 19.7 21 422-442 418-438 (697)
34 KOG1029|consensus 96.2 0.2 4.4E-06 58.2 17.6 86 533-618 419-507 (1118)
35 PF09726 Macoilin: Transmembra 96.1 0.29 6.3E-06 58.3 19.2 26 474-499 422-447 (697)
36 COG0556 UvrB Helicase subunit 96.1 0.0099 2.1E-07 66.8 6.5 94 97-196 3-101 (663)
37 PHA02562 46 endonuclease subun 95.7 0.73 1.6E-05 53.7 20.3 97 518-619 332-428 (562)
38 PF06548 Kinesin-related: Kine 95.4 2.9 6.2E-05 46.5 21.5 117 491-607 284-420 (488)
39 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.2 2.8 6.1E-05 39.4 19.9 100 510-616 32-131 (132)
40 KOG0963|consensus 95.2 2.4 5.2E-05 48.9 20.7 98 518-616 237-336 (629)
41 KOG0250|consensus 95.1 1.3 2.9E-05 54.0 19.4 131 519-655 368-508 (1074)
42 KOG0995|consensus 95.1 7.1 0.00015 44.8 23.9 83 534-616 429-518 (581)
43 PRK11637 AmiB activator; Provi 94.9 0.51 1.1E-05 53.3 15.0 83 475-568 45-127 (428)
44 COG1579 Zn-ribbon protein, pos 94.9 5.5 0.00012 41.3 23.6 11 606-616 177-187 (239)
45 KOG4360|consensus 94.9 1.8 3.8E-05 48.7 18.2 87 516-602 198-287 (596)
46 PF04111 APG6: Autophagy prote 94.9 0.55 1.2E-05 50.8 14.3 105 518-642 45-149 (314)
47 PF07888 CALCOCO1: Calcium bin 94.7 10 0.00022 43.8 24.2 20 586-605 434-453 (546)
48 COG1196 Smc Chromosome segrega 94.7 4.7 0.0001 51.5 24.1 14 238-251 617-630 (1163)
49 PRK09039 hypothetical protein; 94.6 2.3 5E-05 46.7 18.6 78 522-599 122-199 (343)
50 PF08317 Spc7: Spc7 kinetochor 94.6 2 4.2E-05 46.8 18.1 88 548-644 213-300 (325)
51 PLN03188 kinesin-12 family pro 94.6 2.9 6.4E-05 52.0 20.8 111 497-607 1060-1190(1320)
52 PHA02562 46 endonuclease subun 94.6 6.5 0.00014 45.8 23.5 17 132-148 28-44 (562)
53 TIGR02169 SMC_prok_A chromosom 94.6 2.6 5.6E-05 53.4 21.7 14 135-148 27-40 (1164)
54 PF13851 GAS: Growth-arrest sp 94.5 6.3 0.00014 39.9 22.2 19 421-439 26-44 (201)
55 KOG2129|consensus 94.4 10 0.00022 41.8 23.3 23 532-554 203-225 (552)
56 PF04849 HAP1_N: HAP1 N-termin 94.3 8.9 0.00019 41.1 22.4 118 475-599 165-285 (306)
57 PF07888 CALCOCO1: Calcium bin 94.2 5.9 0.00013 45.7 21.1 8 310-317 92-99 (546)
58 KOG0996|consensus 94.2 3.9 8.4E-05 50.4 20.3 66 517-582 501-566 (1293)
59 PF00308 Bac_DnaA: Bacterial d 94.2 0.029 6.4E-07 57.4 2.6 50 98-150 4-53 (219)
60 KOG0933|consensus 94.2 3.9 8.5E-05 49.6 19.9 39 535-573 827-865 (1174)
61 KOG0933|consensus 94.1 4.9 0.00011 48.8 20.4 93 514-606 785-887 (1174)
62 PF10186 Atg14: UV radiation r 94.0 7.3 0.00016 41.2 20.7 103 520-622 60-162 (302)
63 KOG0804|consensus 94.0 3.1 6.6E-05 46.3 17.3 72 549-626 387-458 (493)
64 PRK06893 DNA replication initi 94.0 0.04 8.6E-07 56.8 3.0 48 97-150 11-58 (229)
65 PF04156 IncA: IncA protein; 93.9 3.7 8.1E-05 40.8 17.0 13 485-497 89-101 (191)
66 KOG0250|consensus 93.8 5.1 0.00011 49.2 20.4 69 516-584 379-448 (1074)
67 PRK03918 chromosome segregatio 93.8 12 0.00026 46.2 24.7 14 135-148 27-40 (880)
68 KOG0971|consensus 93.8 5.3 0.00012 47.9 19.7 35 548-582 322-356 (1243)
69 KOG0980|consensus 93.7 4.8 0.0001 48.2 19.4 21 418-438 329-349 (980)
70 PF08317 Spc7: Spc7 kinetochor 93.7 2.4 5.3E-05 46.1 16.5 51 534-584 213-263 (325)
71 TIGR02169 SMC_prok_A chromosom 93.7 4.9 0.00011 50.9 21.6 11 242-252 118-128 (1164)
72 PRK04863 mukB cell division pr 93.7 9.1 0.0002 49.8 23.6 18 132-149 28-45 (1486)
73 KOG0980|consensus 93.6 5.1 0.00011 48.0 19.4 97 523-619 445-548 (980)
74 PF09730 BicD: Microtubule-ass 93.5 7 0.00015 46.7 20.7 90 512-601 72-167 (717)
75 KOG1029|consensus 93.5 5.6 0.00012 47.0 19.0 82 518-599 481-565 (1118)
76 PRK09039 hypothetical protein; 93.4 9.1 0.0002 42.0 20.3 55 531-585 117-171 (343)
77 TIGR02168 SMC_prok_B chromosom 93.4 6.4 0.00014 49.8 21.9 11 46-56 23-33 (1179)
78 PRK02224 chromosome segregatio 93.2 20 0.00042 44.4 25.2 14 135-148 27-40 (880)
79 PF11559 ADIP: Afadin- and alp 93.2 5.7 0.00012 38.1 16.3 77 523-606 66-142 (151)
80 PF00038 Filament: Intermediat 93.2 14 0.00031 39.6 21.9 98 513-614 206-307 (312)
81 PF10146 zf-C4H2: Zinc finger- 93.1 5 0.00011 41.5 16.5 71 514-584 30-100 (230)
82 KOG0996|consensus 93.0 4.4 9.6E-05 49.9 18.0 12 137-148 114-125 (1293)
83 KOG0804|consensus 93.0 6.3 0.00014 43.9 17.7 38 239-282 121-159 (493)
84 PF10186 Atg14: UV radiation r 92.9 11 0.00024 39.9 19.7 17 478-494 28-44 (302)
85 KOG0971|consensus 92.9 5.3 0.00012 47.9 17.9 39 522-560 402-440 (1243)
86 COG2805 PilT Tfp pilus assembl 92.9 0.056 1.2E-06 57.2 2.0 31 119-149 113-143 (353)
87 COG5185 HEC1 Protein involved 92.8 5.4 0.00012 44.6 16.9 30 558-587 375-404 (622)
88 KOG0995|consensus 92.8 20 0.00043 41.4 21.9 85 515-603 300-384 (581)
89 KOG0994|consensus 92.8 18 0.00039 44.8 22.2 122 479-607 1614-1741(1758)
90 TIGR02168 SMC_prok_B chromosom 92.8 7.3 0.00016 49.3 21.1 16 133-148 25-40 (1179)
91 TIGR00606 rad50 rad50. This fa 92.8 18 0.00038 47.0 24.6 16 42-57 24-39 (1311)
92 smart00787 Spc7 Spc7 kinetocho 92.6 9.1 0.0002 41.4 18.5 90 545-643 205-294 (312)
93 KOG0161|consensus 92.6 14 0.0003 48.9 22.8 66 519-584 932-997 (1930)
94 KOG0161|consensus 92.5 9.1 0.0002 50.5 21.1 20 128-147 165-184 (1930)
95 PRK06620 hypothetical protein; 92.3 0.068 1.5E-06 54.6 1.8 50 97-150 11-63 (214)
96 KOG0977|consensus 92.3 18 0.00038 41.9 20.9 30 569-598 201-230 (546)
97 PRK14086 dnaA chromosomal repl 92.2 0.1 2.3E-06 60.9 3.3 52 96-150 282-333 (617)
98 PF11559 ADIP: Afadin- and alp 92.2 8.5 0.00018 36.9 16.1 55 523-577 73-127 (151)
99 KOG1853|consensus 92.2 16 0.00035 37.8 18.7 22 591-612 165-186 (333)
100 COG2433 Uncharacterized conser 92.1 4.6 9.9E-05 46.7 15.9 80 535-615 420-499 (652)
101 KOG0982|consensus 92.1 16 0.00035 40.5 19.3 45 574-618 351-396 (502)
102 PF08614 ATG16: Autophagy prot 92.1 3.2 6.9E-05 41.7 13.4 22 476-497 80-101 (194)
103 COG5185 HEC1 Protein involved 91.8 12 0.00027 41.9 18.1 21 476-496 270-290 (622)
104 TIGR01005 eps_transp_fam exopo 91.8 27 0.00057 42.5 23.5 43 594-640 373-415 (754)
105 PRK02224 chromosome segregatio 91.7 13 0.00028 45.9 21.0 51 534-584 346-396 (880)
106 PRK10884 SH3 domain-containing 91.5 7 0.00015 39.8 15.1 10 609-618 187-196 (206)
107 PRK03918 chromosome segregatio 91.4 14 0.00031 45.5 20.9 11 190-200 132-142 (880)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.4 13 0.00028 35.0 17.4 56 550-605 58-113 (132)
109 PRK12377 putative replication 91.3 0.14 3.1E-06 53.4 2.9 51 98-150 70-120 (248)
110 PF04156 IncA: IncA protein; 91.2 10 0.00022 37.6 16.0 10 488-497 85-94 (191)
111 PRK10884 SH3 domain-containing 91.1 5.7 0.00012 40.4 14.0 10 609-618 183-192 (206)
112 PF10174 Cast: RIM-binding pro 91.1 28 0.00061 42.3 21.9 92 512-607 325-416 (775)
113 KOG0612|consensus 91.0 16 0.00034 45.6 19.6 76 533-609 612-693 (1317)
114 smart00787 Spc7 Spc7 kinetocho 91.0 12 0.00025 40.6 17.1 71 535-605 209-286 (312)
115 PRK09087 hypothetical protein; 91.0 0.16 3.5E-06 52.3 2.8 47 97-149 16-62 (226)
116 PF10168 Nup88: Nuclear pore c 90.9 8.3 0.00018 46.5 17.3 71 532-602 581-651 (717)
117 PF14662 CCDC155: Coiled-coil 90.8 19 0.00041 36.0 23.1 13 426-438 19-31 (193)
118 PF09789 DUF2353: Uncharacteri 90.7 24 0.00051 38.3 18.9 90 517-606 73-177 (319)
119 PRK05642 DNA replication initi 90.7 0.16 3.4E-06 52.6 2.5 47 97-150 14-64 (234)
120 PF00769 ERM: Ezrin/radixin/mo 90.7 24 0.00052 36.9 18.6 34 542-575 59-92 (246)
121 PF00038 Filament: Intermediat 90.6 18 0.00038 38.9 18.3 80 532-611 197-276 (312)
122 PF08614 ATG16: Autophagy prot 90.5 5.6 0.00012 39.9 13.4 18 481-498 78-95 (194)
123 COG1196 Smc Chromosome segrega 90.3 22 0.00047 45.6 21.4 93 523-615 814-909 (1163)
124 TIGR00606 rad50 rad50. This fa 90.3 19 0.00041 46.7 21.1 37 569-605 913-949 (1311)
125 PRK08084 DNA replication initi 90.3 0.2 4.3E-06 51.8 2.8 49 96-150 16-64 (235)
126 PF05667 DUF812: Protein of un 90.3 21 0.00046 42.1 19.6 24 475-498 326-349 (594)
127 KOG0999|consensus 90.2 4.9 0.00011 45.7 13.4 22 421-442 7-28 (772)
128 PRK06526 transposase; Provisio 90.2 0.17 3.6E-06 53.2 2.2 45 101-150 73-117 (254)
129 COG1340 Uncharacterized archae 90.2 29 0.00062 37.1 23.3 91 488-583 135-225 (294)
130 COG3883 Uncharacterized protei 90.1 5 0.00011 42.1 12.8 72 522-593 37-108 (265)
131 PF00261 Tropomyosin: Tropomyo 90.1 26 0.00055 36.4 20.1 12 427-438 34-45 (237)
132 PRK07952 DNA replication prote 90.0 0.28 6E-06 51.2 3.6 52 97-150 67-118 (244)
133 KOG4643|consensus 89.8 38 0.00083 41.6 21.0 64 542-606 528-594 (1195)
134 KOG0994|consensus 89.8 49 0.0011 41.3 21.8 8 403-410 1521-1528(1758)
135 PF13851 GAS: Growth-arrest sp 89.6 25 0.00055 35.6 18.6 44 535-578 84-127 (201)
136 PF08581 Tup_N: Tup N-terminal 89.6 12 0.00026 32.2 12.5 64 545-608 12-75 (79)
137 PF11932 DUF3450: Protein of u 89.5 21 0.00046 37.3 17.2 33 609-641 137-174 (251)
138 PF05667 DUF812: Protein of un 89.4 13 0.00027 43.9 16.9 18 589-606 504-521 (594)
139 COG2804 PulE Type II secretory 89.4 0.19 4E-06 57.0 1.9 31 120-150 247-277 (500)
140 PRK08116 hypothetical protein; 89.4 0.22 4.7E-06 52.7 2.3 52 96-149 79-132 (268)
141 PRK14088 dnaA chromosomal repl 89.3 0.22 4.9E-06 56.4 2.5 50 97-150 100-149 (440)
142 KOG0999|consensus 89.2 23 0.0005 40.6 17.6 103 519-622 152-261 (772)
143 KOG0964|consensus 89.0 66 0.0014 39.5 24.4 108 514-621 416-538 (1200)
144 PF15066 CAGE1: Cancer-associa 89.0 45 0.00098 37.6 19.5 40 515-554 396-435 (527)
145 PRK12704 phosphodiesterase; Pr 88.9 24 0.00052 41.0 18.5 25 560-584 112-136 (520)
146 PF12128 DUF3584: Protein of u 88.9 21 0.00046 45.8 19.8 80 98-186 55-142 (1201)
147 PF00261 Tropomyosin: Tropomyo 88.8 32 0.00069 35.7 20.4 27 535-561 125-151 (237)
148 PF12718 Tropomyosin_1: Tropom 88.8 23 0.00049 33.9 18.0 58 548-605 77-137 (143)
149 PRK04863 mukB cell division pr 88.7 50 0.0011 43.3 22.7 12 365-376 212-223 (1486)
150 PRK00149 dnaA chromosomal repl 88.6 0.32 6.8E-06 55.3 3.0 52 96-150 116-167 (450)
151 KOG0977|consensus 88.5 21 0.00046 41.3 17.4 18 547-564 200-217 (546)
152 PF10146 zf-C4H2: Zinc finger- 88.5 22 0.00047 36.8 16.0 78 524-605 26-103 (230)
153 TIGR00362 DnaA chromosomal rep 88.3 0.35 7.5E-06 54.2 3.1 51 96-149 104-154 (405)
154 PF10174 Cast: RIM-binding pro 88.0 29 0.00064 42.1 19.0 67 516-582 343-409 (775)
155 PF12718 Tropomyosin_1: Tropom 88.0 25 0.00055 33.6 19.5 51 532-582 75-125 (143)
156 COG4372 Uncharacterized protei 88.0 46 0.001 36.6 19.1 45 520-564 134-178 (499)
157 PF04849 HAP1_N: HAP1 N-termin 87.9 43 0.00093 36.1 22.2 74 517-590 214-287 (306)
158 TIGR03007 pepcterm_ChnLen poly 87.9 57 0.0012 37.5 24.9 49 592-640 350-398 (498)
159 TIGR03420 DnaA_homol_Hda DnaA 87.7 0.45 9.8E-06 48.3 3.3 47 97-149 10-56 (226)
160 PF05266 DUF724: Protein of un 87.7 21 0.00045 35.9 14.9 57 534-590 128-184 (190)
161 PF12128 DUF3584: Protein of u 87.7 47 0.001 42.8 21.8 23 476-498 606-628 (1201)
162 PF10168 Nup88: Nuclear pore c 87.6 27 0.00058 42.2 18.4 41 513-553 576-616 (717)
163 KOG4674|consensus 87.6 32 0.00069 45.1 19.6 18 393-410 1148-1165(1822)
164 TIGR01843 type_I_hlyD type I s 87.6 51 0.0011 36.6 20.8 66 549-614 201-270 (423)
165 TIGR02928 orc1/cdc6 family rep 87.6 0.45 9.7E-06 52.1 3.4 21 128-148 37-57 (365)
166 PRK14087 dnaA chromosomal repl 87.4 0.34 7.4E-06 55.1 2.4 50 98-150 111-160 (450)
167 PF10481 CENP-F_N: Cenp-F N-te 87.4 28 0.0006 36.6 15.7 74 523-596 53-126 (307)
168 COG0593 DnaA ATPase involved i 87.2 0.36 7.9E-06 53.8 2.4 51 96-150 81-132 (408)
169 PRK08939 primosomal protein Dn 87.2 0.36 7.7E-06 52.1 2.2 52 98-150 123-175 (306)
170 KOG2391|consensus 87.2 22 0.00047 38.5 15.2 24 590-613 331-354 (365)
171 PRK08727 hypothetical protein; 87.0 0.37 8.1E-06 49.7 2.2 46 97-150 14-60 (233)
172 PRK00411 cdc6 cell division co 87.0 0.54 1.2E-05 52.1 3.6 21 128-148 52-72 (394)
173 KOG0946|consensus 87.0 79 0.0017 38.1 21.1 39 542-580 735-773 (970)
174 KOG0243|consensus 86.8 40 0.00086 41.9 19.0 10 142-151 93-102 (1041)
175 COG3883 Uncharacterized protei 86.5 12 0.00027 39.3 12.9 77 525-601 33-109 (265)
176 PRK08181 transposase; Validate 86.5 0.53 1.1E-05 49.8 3.0 45 101-150 80-125 (269)
177 KOG0249|consensus 86.5 14 0.0003 43.5 14.2 48 569-616 220-270 (916)
178 PF04851 ResIII: Type III rest 86.2 0.39 8.5E-06 46.4 1.7 36 111-150 8-44 (184)
179 cd00009 AAA The AAA+ (ATPases 86.2 0.55 1.2E-05 42.8 2.7 27 122-148 10-36 (151)
180 PF09731 Mitofilin: Mitochondr 86.2 77 0.0017 37.3 21.2 13 617-629 430-443 (582)
181 PF05673 DUF815: Protein of un 86.2 0.42 9.2E-06 49.6 2.0 132 97-276 22-156 (249)
182 COG4372 Uncharacterized protei 86.2 59 0.0013 35.9 25.0 85 340-441 8-93 (499)
183 PF05010 TACC: Transforming ac 86.1 42 0.00092 34.2 19.7 130 477-617 69-202 (207)
184 PF05483 SCP-1: Synaptonemal c 86.1 69 0.0015 37.9 19.5 13 161-173 76-88 (786)
185 TIGR00631 uvrb excinuclease AB 85.9 0.68 1.5E-05 55.1 3.9 93 99-196 2-98 (655)
186 PRK08903 DnaA regulatory inact 85.8 0.52 1.1E-05 48.2 2.5 48 97-149 13-60 (227)
187 COG4942 Membrane-bound metallo 85.7 28 0.00061 39.0 15.8 89 516-604 38-126 (420)
188 COG4026 Uncharacterized protei 85.5 25 0.00055 35.8 13.8 45 525-569 144-188 (290)
189 KOG4643|consensus 85.4 79 0.0017 39.0 20.0 25 388-412 248-272 (1195)
190 KOG1937|consensus 85.4 70 0.0015 36.0 18.4 15 406-420 176-190 (521)
191 TIGR03185 DNA_S_dndD DNA sulfu 85.3 65 0.0014 38.6 20.1 16 133-148 30-45 (650)
192 COG1340 Uncharacterized archae 85.1 58 0.0013 34.9 20.7 58 517-574 194-251 (294)
193 PF06785 UPF0242: Uncharacteri 85.0 50 0.0011 35.7 16.4 20 475-494 97-116 (401)
194 COG1484 DnaC DNA replication p 84.9 0.77 1.7E-05 48.2 3.3 51 97-150 74-124 (254)
195 PF15272 BBP1_C: Spindle pole 84.9 46 0.001 33.5 18.7 66 546-611 84-153 (196)
196 COG1474 CDC6 Cdc6-related prot 84.7 0.76 1.6E-05 50.9 3.3 25 124-148 34-59 (366)
197 PF10234 Cluap1: Clusterin-ass 84.7 49 0.0011 35.0 16.4 84 534-621 166-250 (267)
198 PF06818 Fez1: Fez1; InterPro 84.5 49 0.0011 33.5 16.5 117 478-598 32-171 (202)
199 PRK04778 septation ring format 84.4 93 0.002 36.6 24.3 31 553-583 378-408 (569)
200 PF04111 APG6: Autophagy prote 84.4 22 0.00049 38.5 14.3 123 474-605 13-135 (314)
201 KOG4809|consensus 84.3 66 0.0014 37.0 17.9 40 240-281 122-161 (654)
202 KOG4809|consensus 84.2 86 0.0019 36.1 21.4 70 517-586 332-401 (654)
203 PF10498 IFT57: Intra-flagella 84.1 47 0.001 36.7 16.8 80 536-615 272-356 (359)
204 KOG0976|consensus 84.0 94 0.002 37.4 19.3 16 527-542 341-356 (1265)
205 TIGR01069 mutS2 MutS2 family p 83.9 20 0.00044 43.7 15.2 6 358-363 354-359 (771)
206 PLN02939 transferase, transfer 83.9 97 0.0021 38.6 20.6 157 476-634 256-448 (977)
207 PF14662 CCDC155: Coiled-coil 83.8 50 0.0011 33.1 20.2 43 534-576 85-127 (193)
208 PF03962 Mnd1: Mnd1 family; I 83.8 49 0.0011 33.2 15.4 20 549-568 108-127 (188)
209 KOG0964|consensus 83.7 91 0.002 38.4 19.5 44 137-190 31-80 (1200)
210 PF15254 CCDC14: Coiled-coil d 83.6 1.1E+02 0.0024 36.8 21.8 11 621-631 598-608 (861)
211 PF13245 AAA_19: Part of AAA d 83.5 0.6 1.3E-05 39.6 1.5 26 123-149 3-28 (76)
212 PF07106 TBPIP: Tat binding pr 83.5 8.2 0.00018 37.8 9.7 10 617-626 142-151 (169)
213 PRK00409 recombination and DNA 83.5 21 0.00045 43.7 15.0 7 357-363 358-364 (782)
214 PF06785 UPF0242: Uncharacteri 83.4 71 0.0015 34.6 17.0 9 488-496 72-80 (401)
215 KOG4674|consensus 83.4 1.4E+02 0.003 39.6 22.3 25 476-500 695-719 (1822)
216 PF02841 GBP_C: Guanylate-bind 83.4 61 0.0013 34.8 17.1 20 549-568 234-253 (297)
217 PF15070 GOLGA2L5: Putative go 83.3 88 0.0019 37.2 19.5 140 480-619 156-315 (617)
218 PRK06835 DNA replication prote 83.2 0.6 1.3E-05 50.9 1.6 36 113-150 167-202 (329)
219 KOG4603|consensus 83.1 43 0.00093 32.8 13.7 22 549-570 121-142 (201)
220 PF10267 Tmemb_cc2: Predicted 82.9 87 0.0019 35.1 18.2 103 473-585 215-318 (395)
221 KOG0989|consensus 82.8 0.93 2E-05 48.4 2.8 48 101-148 26-74 (346)
222 KOG1962|consensus 82.8 17 0.00038 37.0 11.7 59 542-600 149-207 (216)
223 PTZ00112 origin recognition co 82.6 0.67 1.5E-05 56.0 1.9 31 598-628 1069-1100(1164)
224 PF10212 TTKRSYEDQ: Predicted 82.6 51 0.0011 37.9 16.5 17 336-352 214-230 (518)
225 COG2433 Uncharacterized conser 82.6 31 0.00067 40.2 14.8 31 159-189 164-194 (652)
226 PRK06921 hypothetical protein; 82.5 0.94 2E-05 47.9 2.8 32 119-150 102-136 (266)
227 PRK01156 chromosome segregatio 82.5 1.4E+02 0.003 37.2 22.5 16 133-148 25-40 (895)
228 PF15619 Lebercilin: Ciliary p 82.4 59 0.0013 32.8 17.4 23 476-498 67-89 (194)
229 PRK10436 hypothetical protein; 82.3 0.62 1.4E-05 53.1 1.4 29 122-150 209-237 (462)
230 KOG0018|consensus 82.3 67 0.0014 39.9 18.0 41 357-398 481-524 (1141)
231 PF10473 CENP-F_leu_zip: Leuci 82.2 48 0.001 31.7 19.3 93 509-601 45-137 (140)
232 PF09730 BicD: Microtubule-ass 82.0 50 0.0011 39.7 16.9 70 524-593 70-142 (717)
233 KOG4673|consensus 81.9 1.2E+02 0.0026 36.0 20.4 45 384-441 398-442 (961)
234 TIGR03185 DNA_S_dndD DNA sulfu 81.9 33 0.00071 41.0 15.8 23 327-349 167-189 (650)
235 PF10211 Ax_dynein_light: Axon 81.7 56 0.0012 32.8 14.9 19 379-397 18-36 (189)
236 PF10234 Cluap1: Clusterin-ass 81.5 27 0.00059 36.9 13.0 75 527-601 173-247 (267)
237 TIGR02538 type_IV_pilB type IV 81.5 0.67 1.5E-05 54.3 1.4 29 122-150 307-335 (564)
238 PRK12422 chromosomal replicati 81.5 1.1 2.3E-05 51.0 3.0 52 96-150 105-160 (445)
239 cd00046 DEXDc DEAD-like helica 81.4 0.65 1.4E-05 41.9 1.0 17 134-150 3-19 (144)
240 PF13401 AAA_22: AAA domain; P 81.3 0.56 1.2E-05 43.0 0.5 18 131-148 4-21 (131)
241 TIGR02680 conserved hypothetic 81.1 78 0.0017 41.3 19.6 17 133-149 26-42 (1353)
242 PF09403 FadA: Adhesion protei 80.8 40 0.00086 31.6 12.5 18 599-616 102-119 (126)
243 TIGR02533 type_II_gspE general 80.6 0.87 1.9E-05 52.3 1.8 29 122-150 233-261 (486)
244 KOG0976|consensus 80.5 1.4E+02 0.0029 36.2 18.9 24 519-542 137-160 (1265)
245 PRK00409 recombination and DNA 80.4 43 0.00094 41.0 16.2 12 357-368 366-377 (782)
246 PF15070 GOLGA2L5: Putative go 80.4 1.3E+02 0.0029 35.7 22.9 20 600-619 254-273 (617)
247 PF00437 T2SE: Type II/IV secr 80.4 0.74 1.6E-05 48.4 1.1 18 131-148 127-144 (270)
248 PF01935 DUF87: Domain of unkn 80.3 0.73 1.6E-05 47.0 1.0 16 133-148 25-40 (229)
249 cd01131 PilT Pilus retraction 80.3 0.75 1.6E-05 46.2 1.0 19 131-149 1-19 (198)
250 TIGR02525 plasmid_TraJ plasmid 80.0 0.94 2E-05 50.2 1.8 27 122-149 141-167 (372)
251 TIGR02680 conserved hypothetic 79.9 1.3E+02 0.0028 39.3 21.1 13 621-633 390-402 (1353)
252 PF12777 MT: Microtubule-bindi 79.9 31 0.00067 37.9 13.6 105 523-627 228-337 (344)
253 PF06160 EzrA: Septation ring 79.9 1.2E+02 0.0026 35.7 19.2 49 557-605 193-241 (560)
254 TIGR03545 conserved hypothetic 79.7 32 0.0007 40.3 14.2 38 567-604 221-258 (555)
255 PF12846 AAA_10: AAA-like doma 79.6 0.76 1.7E-05 48.2 0.9 19 131-149 1-19 (304)
256 KOG1962|consensus 79.6 13 0.00027 38.0 9.4 14 399-412 56-69 (216)
257 TIGR01420 pilT_fam pilus retra 79.5 1 2.2E-05 49.4 1.9 29 121-149 112-140 (343)
258 KOG0288|consensus 79.3 1E+02 0.0022 34.5 16.6 25 622-646 160-184 (459)
259 TIGR01843 type_I_hlyD type I s 79.3 1.1E+02 0.0023 33.9 20.1 15 424-438 83-97 (423)
260 PRK04778 septation ring format 79.3 1.3E+02 0.0028 35.5 19.3 16 482-497 322-337 (569)
261 PF15035 Rootletin: Ciliary ro 78.8 74 0.0016 31.8 17.9 22 479-500 18-39 (182)
262 smart00053 DYNc Dynamin, GTPas 78.7 8.4 0.00018 40.1 8.2 17 133-149 28-44 (240)
263 COG4026 Uncharacterized protei 78.7 82 0.0018 32.2 17.9 46 521-566 154-199 (290)
264 smart00382 AAA ATPases associa 78.7 0.87 1.9E-05 40.9 0.9 19 132-150 3-21 (148)
265 PF05911 DUF869: Plant protein 78.4 1.7E+02 0.0037 35.7 20.3 95 533-627 109-221 (769)
266 TIGR01069 mutS2 MutS2 family p 78.4 44 0.00096 40.8 15.4 11 357-367 361-371 (771)
267 PRK09183 transposase/IS protei 78.4 1.2 2.6E-05 46.8 1.9 45 101-150 77-121 (259)
268 TIGR02524 dot_icm_DotB Dot/Icm 78.3 1.2 2.6E-05 49.2 1.9 24 126-149 129-152 (358)
269 KOG2129|consensus 78.2 1.2E+02 0.0026 33.8 19.1 82 550-634 252-333 (552)
270 KOG4673|consensus 78.2 1.5E+02 0.0032 35.3 18.1 30 550-579 536-565 (961)
271 PF09304 Cortex-I_coil: Cortex 78.2 53 0.0012 29.8 15.8 36 548-583 41-76 (107)
272 COG5008 PilU Tfp pilus assembl 78.1 1.5 3.3E-05 45.9 2.4 31 119-149 115-145 (375)
273 PF00270 DEAD: DEAD/DEAH box h 77.9 1.3 2.8E-05 42.3 1.8 26 123-150 8-33 (169)
274 KOG1003|consensus 77.6 83 0.0018 31.6 14.5 16 427-442 23-38 (205)
275 TIGR01005 eps_transp_fam exopo 77.2 84 0.0018 38.3 17.5 16 337-352 80-95 (754)
276 KOG1937|consensus 77.2 1.3E+02 0.0029 33.9 17.0 32 530-561 345-376 (521)
277 PF10267 Tmemb_cc2: Predicted 77.1 35 0.00075 38.2 12.8 16 337-352 67-82 (395)
278 PF01695 IstB_IS21: IstB-like 77.1 1.4 3E-05 43.7 1.8 19 132-150 48-66 (178)
279 COG0216 PrfA Protein chain rel 77.0 37 0.00081 36.9 12.4 88 548-643 37-152 (363)
280 PF13604 AAA_30: AAA domain; P 76.9 1.2 2.7E-05 44.6 1.5 28 122-149 9-36 (196)
281 KOG2991|consensus 76.9 63 0.0014 33.7 13.4 20 357-376 93-112 (330)
282 PF12329 TMF_DNA_bd: TATA elem 76.8 45 0.00097 28.2 10.9 48 536-583 4-51 (74)
283 PF13870 DUF4201: Domain of un 76.7 80 0.0017 31.0 18.8 22 477-498 6-27 (177)
284 KOG0963|consensus 76.7 1.6E+02 0.0035 34.6 21.5 50 598-647 345-404 (629)
285 PF03962 Mnd1: Mnd1 family; I 76.6 38 0.00083 33.9 11.9 63 512-575 65-127 (188)
286 cd01129 PulE-GspE PulE/GspE Th 75.9 1.5 3.2E-05 46.4 1.7 27 123-149 72-98 (264)
287 PF12325 TMF_TATA_bd: TATA ele 75.9 68 0.0015 29.8 15.5 11 546-556 77-87 (120)
288 PF09738 DUF2051: Double stran 75.6 63 0.0014 34.9 13.9 53 535-587 110-162 (302)
289 PF06810 Phage_GP20: Phage min 75.1 60 0.0013 31.5 12.5 49 573-621 52-101 (155)
290 KOG0239|consensus 75.1 1.8E+02 0.0039 35.0 18.9 86 96-200 25-110 (670)
291 TIGR01242 26Sp45 26S proteasom 74.9 3.6 7.8E-05 45.4 4.5 52 98-149 118-174 (364)
292 PF10498 IFT57: Intra-flagella 74.8 1.4E+02 0.0031 33.0 18.3 14 425-438 194-207 (359)
293 KOG1003|consensus 74.8 98 0.0021 31.1 18.2 22 476-497 17-38 (205)
294 PF13863 DUF4200: Domain of un 74.8 69 0.0015 29.4 16.5 16 605-620 106-121 (126)
295 PF05970 PIF1: PIF1-like helic 74.5 2.1 4.6E-05 47.2 2.7 37 108-148 3-39 (364)
296 PF07106 TBPIP: Tat binding pr 74.4 31 0.00067 33.7 10.6 19 477-495 72-90 (169)
297 PF10481 CENP-F_N: Cenp-F N-te 74.2 1.2E+02 0.0027 32.0 15.3 59 524-582 61-119 (307)
298 KOG4360|consensus 74.0 1.7E+02 0.0037 33.6 17.5 53 535-587 231-283 (596)
299 PRK01156 chromosome segregatio 73.6 2.3E+02 0.005 35.2 20.3 11 45-55 22-32 (895)
300 KOG2991|consensus 73.2 1.2E+02 0.0027 31.6 18.4 43 569-611 250-292 (330)
301 PF01637 Arch_ATPase: Archaeal 73.1 1.6 3.5E-05 43.7 1.2 29 121-149 10-38 (234)
302 PRK11281 hypothetical protein; 73.0 1.8E+02 0.0039 37.1 18.9 16 391-406 63-78 (1113)
303 KOG0979|consensus 73.0 2.5E+02 0.0054 35.0 19.8 21 135-155 46-70 (1072)
304 PHA00729 NTP-binding motif con 72.8 2.8 6E-05 43.2 2.8 31 119-149 5-35 (226)
305 PF00004 AAA: ATPase family as 72.7 1.5 3.3E-05 39.9 0.8 15 134-148 1-15 (132)
306 PRK12402 replication factor C 72.6 2.6 5.7E-05 45.4 2.8 43 99-149 12-54 (337)
307 PRK13894 conjugal transfer ATP 72.5 1.9 4E-05 46.9 1.5 28 121-149 139-166 (319)
308 PF15254 CCDC14: Coiled-coil d 72.3 72 0.0016 38.3 14.1 33 518-550 443-475 (861)
309 PF13479 AAA_24: AAA domain 71.8 2 4.3E-05 43.7 1.4 21 131-151 3-23 (213)
310 TIGR02782 TrbB_P P-type conjug 71.8 2 4.3E-05 46.3 1.5 28 121-149 123-150 (299)
311 PF00448 SRP54: SRP54-type pro 71.8 1.6 3.6E-05 43.9 0.8 17 133-149 3-19 (196)
312 PRK03992 proteasome-activating 71.7 1.4 3E-05 49.2 0.3 51 98-148 127-182 (389)
313 PF05278 PEARLI-4: Arabidopsis 71.6 86 0.0019 33.2 13.3 8 431-438 131-138 (269)
314 PF09755 DUF2046: Uncharacteri 71.6 1.5E+02 0.0033 32.0 20.7 46 522-567 83-129 (310)
315 KOG0612|consensus 71.4 1.7E+02 0.0037 37.0 17.5 21 128-148 85-105 (1317)
316 PF02841 GBP_C: Guanylate-bind 71.4 1.2E+02 0.0025 32.6 15.0 21 545-565 237-257 (297)
317 TIGR03017 EpsF chain length de 71.2 1.8E+02 0.004 32.7 24.1 43 595-641 340-382 (444)
318 KOG0288|consensus 71.1 59 0.0013 36.2 12.3 30 530-559 41-70 (459)
319 COG1201 Lhr Lhr-like helicases 70.9 4.9 0.00011 48.8 4.6 24 122-147 30-53 (814)
320 TIGR03015 pepcterm_ATPase puta 70.9 2.7 5.9E-05 43.7 2.3 26 124-149 36-61 (269)
321 KOG3647|consensus 70.9 70 0.0015 33.6 12.2 64 532-595 121-184 (338)
322 PTZ00361 26 proteosome regulat 70.8 4.5 9.8E-05 45.9 4.2 50 99-148 180-234 (438)
323 KOG0978|consensus 70.7 1.6E+02 0.0034 35.5 16.6 112 473-584 506-620 (698)
324 PRK00846 hypothetical protein; 70.4 44 0.00095 28.6 8.9 46 538-583 14-59 (77)
325 PF13191 AAA_16: AAA ATPase do 70.0 1.8 3.9E-05 42.0 0.7 26 123-148 16-41 (185)
326 PF13207 AAA_17: AAA domain; P 70.0 2 4.4E-05 38.8 0.9 16 133-148 1-16 (121)
327 PF05010 TACC: Transforming ac 69.9 1.3E+02 0.0029 30.6 19.8 42 569-610 140-181 (207)
328 PLN00020 ribulose bisphosphate 69.9 3.8 8.3E-05 45.3 3.1 53 96-148 109-165 (413)
329 PRK04406 hypothetical protein; 69.8 42 0.00092 28.5 8.8 22 548-569 29-50 (75)
330 KOG0727|consensus 69.8 3.5 7.7E-05 42.9 2.7 76 101-176 154-248 (408)
331 PF13086 AAA_11: AAA domain; P 69.5 2.5 5.5E-05 42.3 1.6 27 123-150 10-36 (236)
332 PF11932 DUF3450: Protein of u 69.3 1.5E+02 0.0032 30.9 18.7 21 549-569 54-74 (251)
333 KOG0962|consensus 69.3 82 0.0018 40.2 14.5 37 563-599 883-919 (1294)
334 PRK15422 septal ring assembly 69.0 65 0.0014 27.6 9.5 51 522-572 24-74 (79)
335 PF15233 SYCE1: Synaptonemal c 69.0 1E+02 0.0022 28.9 14.0 12 487-498 9-20 (134)
336 PF06160 EzrA: Septation ring 69.0 2.4E+02 0.0052 33.2 19.2 16 425-440 21-36 (560)
337 KOG4657|consensus 68.8 1.5E+02 0.0031 30.6 15.5 36 538-573 80-115 (246)
338 PHA02544 44 clamp loader, smal 68.7 3.1 6.6E-05 44.7 2.2 22 128-149 39-61 (316)
339 PF04102 SlyX: SlyX; InterPro 68.7 29 0.00063 28.8 7.5 34 549-582 16-49 (69)
340 PF14915 CCDC144C: CCDC144C pr 68.7 1.7E+02 0.0037 31.4 19.3 91 515-605 97-191 (305)
341 PRK02119 hypothetical protein; 68.6 37 0.00081 28.6 8.2 9 557-565 36-44 (73)
342 TIGR03752 conj_TIGR03752 integ 68.6 57 0.0012 37.1 12.0 18 589-606 122-139 (472)
343 PRK10361 DNA recombination pro 68.5 2.3E+02 0.0049 32.7 20.1 40 564-603 139-178 (475)
344 PRK09343 prefoldin subunit bet 68.4 1E+02 0.0022 28.6 12.8 30 549-578 76-105 (121)
345 PRK10929 putative mechanosensi 68.4 2.8E+02 0.006 35.5 19.0 18 423-440 73-90 (1109)
346 KOG4005|consensus 68.4 1.2E+02 0.0026 31.3 13.0 53 529-581 89-141 (292)
347 COG4962 CpaF Flp pilus assembl 68.1 3.1 6.6E-05 45.3 2.0 27 121-148 164-190 (355)
348 PF00910 RNA_helicase: RNA hel 68.0 1.9 4E-05 38.8 0.3 15 134-148 1-15 (107)
349 KOG4807|consensus 67.8 2E+02 0.0044 31.9 20.1 57 543-599 518-574 (593)
350 smart00763 AAA_PrkA PrkA AAA d 67.7 9.3 0.0002 42.1 5.6 42 101-147 49-94 (361)
351 PF09787 Golgin_A5: Golgin sub 67.7 2.4E+02 0.0053 32.7 19.6 65 552-616 282-349 (511)
352 PF05911 DUF869: Plant protein 67.5 3E+02 0.0065 33.7 20.6 59 550-610 119-177 (769)
353 KOG4657|consensus 67.5 1.5E+02 0.0034 30.4 17.7 36 552-587 87-122 (246)
354 PF13863 DUF4200: Domain of un 67.4 1E+02 0.0022 28.3 14.4 20 563-582 79-98 (126)
355 PF12761 End3: Actin cytoskele 67.3 38 0.00081 34.1 9.2 24 478-501 97-120 (195)
356 PRK13729 conjugal transfer pil 67.1 23 0.00051 40.2 8.6 9 670-678 195-203 (475)
357 smart00487 DEXDc DEAD-like hel 67.0 3.6 7.7E-05 39.5 2.1 19 132-150 25-43 (201)
358 PF00580 UvrD-helicase: UvrD/R 66.9 2.3 4.9E-05 45.0 0.7 21 130-150 12-32 (315)
359 KOG0018|consensus 66.8 2.6E+02 0.0057 35.0 17.6 12 137-148 31-42 (1141)
360 KOG0926|consensus 66.7 4 8.6E-05 48.7 2.6 19 130-148 270-288 (1172)
361 PF10212 TTKRSYEDQ: Predicted 66.5 79 0.0017 36.4 12.6 70 545-614 442-511 (518)
362 KOG4807|consensus 66.4 2.2E+02 0.0047 31.6 18.0 18 424-441 293-310 (593)
363 KOG0972|consensus 66.3 1.9E+02 0.0041 30.9 15.2 82 540-621 283-369 (384)
364 cd01130 VirB11-like_ATPase Typ 66.3 3.6 7.8E-05 40.8 2.0 29 120-149 15-43 (186)
365 KOG3647|consensus 66.1 1.8E+02 0.0039 30.7 17.3 53 522-574 125-184 (338)
366 PRK13833 conjugal transfer pro 66.1 3 6.4E-05 45.4 1.4 28 121-149 135-162 (323)
367 PRK12723 flagellar biosynthesi 66.0 5.8 0.00013 44.3 3.7 19 131-149 174-192 (388)
368 PF15619 Lebercilin: Ciliary p 65.9 1.5E+02 0.0033 29.8 23.3 32 546-577 120-151 (194)
369 PF02562 PhoH: PhoH-like prote 65.2 3.5 7.5E-05 41.9 1.6 20 130-149 18-37 (205)
370 TIGR03499 FlhF flagellar biosy 65.2 6.4 0.00014 41.9 3.7 19 132-150 195-213 (282)
371 COG1222 RPT1 ATP-dependent 26S 65.1 6.8 0.00015 42.9 3.8 77 100-176 149-244 (406)
372 PRK04406 hypothetical protein; 65.0 61 0.0013 27.5 8.8 46 535-580 9-54 (75)
373 PF07724 AAA_2: AAA domain (Cd 64.9 3.2 6.9E-05 40.8 1.2 17 132-148 4-20 (171)
374 COG1223 Predicted ATPase (AAA+ 64.7 3 6.5E-05 43.7 1.0 16 133-148 153-168 (368)
375 COG1382 GimC Prefoldin, chaper 64.7 1.2E+02 0.0026 28.2 12.7 35 549-583 75-109 (119)
376 PF09744 Jnk-SapK_ap_N: JNK_SA 64.4 1.5E+02 0.0032 29.0 15.7 29 541-569 86-114 (158)
377 KOG4460|consensus 64.2 86 0.0019 36.2 12.1 38 535-572 607-644 (741)
378 TIGR03007 pepcterm_ChnLen poly 63.8 2.7E+02 0.0059 31.9 19.3 22 476-497 167-188 (498)
379 PF01580 FtsK_SpoIIIE: FtsK/Sp 63.8 2.7 5.9E-05 42.1 0.6 17 133-149 40-56 (205)
380 PF07851 TMPIT: TMPIT-like pro 63.8 73 0.0016 34.8 11.3 7 613-619 87-93 (330)
381 PRK11519 tyrosine kinase; Prov 63.6 2.4E+02 0.0051 34.3 17.1 23 476-498 273-295 (719)
382 PF15035 Rootletin: Ciliary ro 63.6 1.6E+02 0.0036 29.3 15.5 45 549-593 86-130 (182)
383 PF04012 PspA_IM30: PspA/IM30 63.6 1.7E+02 0.0038 29.6 15.1 14 592-605 167-180 (221)
384 PF13671 AAA_33: AAA domain; P 63.5 3.3 7.1E-05 38.5 1.0 16 133-148 1-16 (143)
385 PF13514 AAA_27: AAA domain 63.4 2.8E+02 0.0061 35.5 18.4 58 548-605 893-955 (1111)
386 PF06048 DUF927: Domain of unk 63.2 6.2 0.00013 42.1 3.2 32 116-148 179-210 (286)
387 PRK13851 type IV secretion sys 62.9 3.2 6.9E-05 45.6 0.9 29 121-150 153-181 (344)
388 PRK13900 type IV secretion sys 62.9 3.8 8.3E-05 44.7 1.5 28 121-149 151-178 (332)
389 KOG2751|consensus 62.9 2.7E+02 0.0057 31.5 16.6 57 520-576 180-236 (447)
390 PRK11519 tyrosine kinase; Prov 62.8 1.4E+02 0.0031 36.2 15.0 47 592-642 365-411 (719)
391 PF05262 Borrelia_P83: Borreli 62.7 2.9E+02 0.0064 31.9 16.5 18 622-640 393-410 (489)
392 PRK10536 hypothetical protein; 62.7 4.2 9.2E-05 42.8 1.7 42 98-149 51-92 (262)
393 PF05529 Bap31: B-cell recepto 62.7 68 0.0015 32.0 10.4 33 552-584 155-187 (192)
394 PRK13182 racA polar chromosome 62.6 62 0.0013 32.1 9.8 25 585-609 120-144 (175)
395 PF07728 AAA_5: AAA domain (dy 62.5 3.1 6.8E-05 38.7 0.7 15 134-148 2-16 (139)
396 PRK06547 hypothetical protein; 62.1 6.4 0.00014 38.7 2.8 28 121-148 5-32 (172)
397 PRK10361 DNA recombination pro 62.0 3E+02 0.0064 31.7 18.0 28 578-605 135-162 (475)
398 PF10805 DUF2730: Protein of u 61.8 94 0.002 28.1 10.1 50 535-584 40-91 (106)
399 PRK13764 ATPase; Provisional 61.8 4.1 8.8E-05 48.0 1.6 22 129-150 255-276 (602)
400 PRK14161 heat shock protein Gr 61.6 1E+02 0.0022 30.7 11.1 45 550-594 18-62 (178)
401 PF05483 SCP-1: Synaptonemal c 61.5 3.5E+02 0.0076 32.4 20.7 42 574-615 354-395 (786)
402 PF05266 DUF724: Protein of un 61.4 1.8E+02 0.004 29.2 16.7 49 539-587 126-174 (190)
403 PF04102 SlyX: SlyX; InterPro 61.0 50 0.0011 27.4 7.5 44 535-578 9-52 (69)
404 cd00268 DEADc DEAD-box helicas 61.0 5.6 0.00012 39.4 2.2 22 124-147 31-52 (203)
405 TIGR02881 spore_V_K stage V sp 60.9 8 0.00017 40.5 3.5 19 130-148 41-59 (261)
406 KOG3850|consensus 60.9 2.7E+02 0.0059 30.9 20.9 30 472-501 262-291 (455)
407 PF07111 HCR: Alpha helical co 60.8 3.6E+02 0.0078 32.3 19.4 86 520-605 159-257 (739)
408 PRK09841 cryptic autophosphory 60.8 1.3E+02 0.0028 36.5 14.2 33 594-626 367-399 (726)
409 PF06810 Phage_GP20: Phage min 60.7 1.1E+02 0.0025 29.6 11.1 17 559-575 52-68 (155)
410 PRK04325 hypothetical protein; 60.7 69 0.0015 27.1 8.4 8 557-564 36-43 (74)
411 PRK02119 hypothetical protein; 60.6 75 0.0016 26.8 8.6 44 538-581 10-53 (73)
412 TIGR01241 FtsH_fam ATP-depende 60.6 4.6 9.9E-05 46.6 1.7 52 97-149 50-106 (495)
413 cd07651 F-BAR_PombeCdc15_like 60.6 2.1E+02 0.0045 29.5 18.7 38 568-605 167-204 (236)
414 PRK09841 cryptic autophosphory 60.5 2.5E+02 0.0054 34.2 16.5 23 476-498 273-295 (726)
415 PRK00846 hypothetical protein; 60.5 70 0.0015 27.4 8.3 45 534-578 17-61 (77)
416 PF04880 NUDE_C: NUDE protein, 60.4 14 0.0003 36.2 4.7 42 536-581 6-47 (166)
417 PF06309 Torsin: Torsin; Inte 60.4 5 0.00011 37.6 1.6 16 133-148 55-70 (127)
418 PRK02793 phi X174 lysis protei 60.4 71 0.0015 26.8 8.4 20 549-568 27-46 (72)
419 PTZ00424 helicase 45; Provisio 60.4 5.1 0.00011 44.4 2.0 26 121-148 57-82 (401)
420 PRK14160 heat shock protein Gr 60.3 1.3E+02 0.0028 30.8 11.8 33 560-592 70-102 (211)
421 KOG0163|consensus 60.2 3.8E+02 0.0083 32.5 16.6 19 129-147 142-160 (1259)
422 CHL00081 chlI Mg-protoporyphyr 60.1 3.8 8.3E-05 45.1 0.9 45 97-149 12-56 (350)
423 PF05496 RuvB_N: Holliday junc 60.1 10 0.00022 39.1 3.9 42 105-147 23-66 (233)
424 PRK11776 ATP-dependent RNA hel 60.0 5.3 0.00012 45.4 2.1 23 123-147 35-57 (460)
425 PF15290 Syntaphilin: Golgi-lo 59.7 2.4E+02 0.0053 30.0 14.0 18 589-606 144-161 (305)
426 KOG4005|consensus 59.5 1.1E+02 0.0024 31.6 10.8 23 543-565 96-118 (292)
427 PF14182 YgaB: YgaB-like prote 59.4 1E+02 0.0022 26.4 8.9 36 566-601 41-76 (79)
428 KOG0249|consensus 59.3 2.1E+02 0.0045 34.3 14.4 18 421-438 104-121 (916)
429 PF06414 Zeta_toxin: Zeta toxi 59.3 4.4 9.6E-05 40.5 1.2 19 130-148 14-32 (199)
430 KOG0946|consensus 59.3 4.1E+02 0.0089 32.5 18.6 38 531-568 679-716 (970)
431 PF02050 FliJ: Flagellar FliJ 59.3 1.3E+02 0.0027 26.6 14.8 38 549-586 57-94 (123)
432 KOG1103|consensus 59.2 1.8E+02 0.0038 31.7 12.8 18 336-353 56-73 (561)
433 PF13238 AAA_18: AAA domain; P 59.0 4 8.7E-05 36.8 0.7 15 134-148 1-15 (129)
434 PRK10803 tol-pal system protei 58.8 70 0.0015 33.8 10.1 50 535-584 45-94 (263)
435 KOG0979|consensus 58.8 4.6E+02 0.0099 32.9 20.0 6 185-190 89-94 (1072)
436 PRK13342 recombination factor 58.6 5.5 0.00012 44.7 1.9 39 110-149 16-54 (413)
437 KOG0962|consensus 58.4 5.2E+02 0.011 33.4 18.9 46 544-589 878-923 (1294)
438 PRK02793 phi X174 lysis protei 58.2 81 0.0018 26.5 8.4 35 543-577 14-48 (72)
439 PLN03025 replication factor C 58.2 7.5 0.00016 42.0 2.8 22 129-150 32-53 (319)
440 TIGR00635 ruvB Holliday juncti 58.2 6.8 0.00015 41.7 2.4 40 109-149 7-48 (305)
441 PTZ00121 MAEBL; Provisional 58.1 5.5E+02 0.012 33.6 19.0 20 232-251 935-954 (2084)
442 COG1419 FlhF Flagellar GTP-bin 58.1 8.4 0.00018 43.0 3.1 39 111-149 179-221 (407)
443 TIGR02903 spore_lon_C ATP-depe 58.1 5.6 0.00012 47.2 1.9 42 99-148 151-192 (615)
444 PF03215 Rad17: Rad17 cell cyc 57.9 6.4 0.00014 45.6 2.3 30 119-148 31-62 (519)
445 cd07648 F-BAR_FCHO The F-BAR ( 57.8 2.4E+02 0.0053 29.4 21.9 85 557-641 149-246 (261)
446 PF05701 WEMBL: Weak chloropla 57.8 3.6E+02 0.0079 31.4 18.2 125 475-603 286-410 (522)
447 PRK14722 flhF flagellar biosyn 57.7 4.7 0.0001 44.7 1.1 19 131-149 137-155 (374)
448 PF00063 Myosin_head: Myosin h 57.7 6.6 0.00014 47.2 2.4 36 113-148 67-102 (689)
449 TIGR03545 conserved hypothetic 57.5 63 0.0014 37.9 10.3 30 547-576 229-258 (555)
450 COG0419 SbcC ATPase involved i 57.1 4.8E+02 0.01 32.6 20.7 18 131-148 25-42 (908)
451 PF08647 BRE1: BRE1 E3 ubiquit 57.0 1.4E+02 0.003 26.4 12.6 57 534-594 35-91 (96)
452 TIGR02449 conserved hypothetic 56.9 1.1E+02 0.0023 25.4 8.5 8 552-559 29-36 (65)
453 PRK00736 hypothetical protein; 56.9 79 0.0017 26.2 8.0 23 548-570 23-45 (68)
454 KOG2543|consensus 56.7 5.5 0.00012 43.9 1.4 40 130-192 29-68 (438)
455 PRK00440 rfc replication facto 56.6 8.1 0.00018 41.2 2.7 21 128-148 35-55 (319)
456 PF09787 Golgin_A5: Golgin sub 56.6 3.7E+02 0.0081 31.2 16.6 27 580-606 345-371 (511)
457 KOG1899|consensus 56.5 2.9E+02 0.0062 32.7 14.6 8 427-434 109-116 (861)
458 TIGR01554 major_cap_HK97 phage 56.5 1.9E+02 0.0042 31.9 13.6 15 616-630 118-132 (378)
459 PRK11192 ATP-dependent RNA hel 56.5 6.7 0.00015 44.2 2.1 23 123-147 32-54 (434)
460 PF09744 Jnk-SapK_ap_N: JNK_SA 56.2 2E+02 0.0044 28.0 13.1 27 533-559 92-118 (158)
461 COG3096 MukB Uncharacterized p 56.1 3.5E+02 0.0076 32.7 15.4 55 521-575 989-1043(1480)
462 KOG1899|consensus 56.1 2.8E+02 0.0062 32.7 14.5 33 530-562 181-213 (861)
463 PF15066 CAGE1: Cancer-associa 56.0 3.6E+02 0.0077 30.8 19.9 60 546-605 385-444 (527)
464 PRK11331 5-methylcytosine-spec 56.0 7.3 0.00016 44.2 2.2 28 373-404 319-346 (459)
465 COG3074 Uncharacterized protei 56.0 1.2E+02 0.0026 25.3 10.3 33 546-578 27-59 (79)
466 PF00901 Orbi_VP5: Orbivirus o 55.9 3.7E+02 0.008 30.9 16.4 60 543-602 157-224 (508)
467 PRK04325 hypothetical protein; 55.7 95 0.0021 26.2 8.4 30 548-577 20-49 (74)
468 PRK00295 hypothetical protein; 55.4 97 0.0021 25.7 8.3 29 549-577 17-45 (68)
469 TIGR01010 BexC_CtrB_KpsE polys 55.4 2.7E+02 0.0058 30.6 14.5 38 592-629 273-310 (362)
470 KOG2751|consensus 55.4 3.5E+02 0.0076 30.5 14.9 8 359-366 84-91 (447)
471 KOG0340|consensus 55.1 11 0.00024 41.1 3.3 30 120-151 35-64 (442)
472 PRK00736 hypothetical protein; 55.1 94 0.002 25.8 8.1 30 548-577 16-45 (68)
473 PF12958 DUF3847: Protein of u 54.9 1.1E+02 0.0023 26.9 8.7 21 609-629 49-75 (86)
474 PRK11281 hypothetical protein; 54.8 5.7E+02 0.012 32.8 19.8 12 424-435 62-73 (1113)
475 COG1219 ClpX ATP-dependent pro 54.7 5.7 0.00012 42.9 1.0 17 131-147 97-113 (408)
476 PRK14143 heat shock protein Gr 54.7 95 0.0021 32.4 10.0 33 537-569 74-106 (238)
477 TIGR00348 hsdR type I site-spe 54.6 8.8 0.00019 46.0 2.8 31 119-150 247-282 (667)
478 PF02456 Adeno_IVa2: Adenoviru 54.3 5 0.00011 43.1 0.6 14 135-148 91-104 (369)
479 PRK04837 ATP-dependent RNA hel 54.3 7.5 0.00016 43.7 2.0 26 120-147 36-61 (423)
480 PF05377 FlaC_arch: Flagella a 54.3 64 0.0014 25.8 6.6 51 531-581 1-51 (55)
481 KOG2264|consensus 54.2 1E+02 0.0022 35.7 10.6 69 530-598 79-150 (907)
482 PF12777 MT: Microtubule-bindi 54.1 3.3E+02 0.0072 29.8 16.7 112 516-627 8-124 (344)
483 KOG0742|consensus 53.9 3.8E+02 0.0082 30.4 17.3 114 472-600 105-220 (630)
484 PRK03947 prefoldin subunit alp 53.7 2E+02 0.0042 27.1 13.2 99 474-580 3-137 (140)
485 PF15290 Syntaphilin: Golgi-lo 53.7 3E+02 0.0066 29.3 13.2 101 479-579 63-173 (305)
486 PF09738 DUF2051: Double stran 53.6 3.1E+02 0.0067 29.7 13.9 91 525-615 79-172 (302)
487 TIGR00634 recN DNA repair prot 53.5 4.3E+02 0.0094 31.0 19.1 165 425-615 185-371 (563)
488 PF05701 WEMBL: Weak chloropla 53.0 4.3E+02 0.0093 30.8 22.4 157 424-611 220-393 (522)
489 PF14988 DUF4515: Domain of un 53.0 2.7E+02 0.0058 28.4 14.7 92 507-605 9-100 (206)
490 PF07693 KAP_NTPase: KAP famil 52.9 11 0.00024 40.3 3.0 36 113-148 2-37 (325)
491 COG4477 EzrA Negative regulato 52.6 4.3E+02 0.0094 30.7 16.3 120 477-604 316-435 (570)
492 PRK10590 ATP-dependent RNA hel 52.5 8.9 0.00019 43.6 2.3 26 120-147 29-54 (456)
493 PF12775 AAA_7: P-loop contain 52.4 8.4 0.00018 40.9 1.9 26 122-148 25-50 (272)
494 KOG0163|consensus 52.2 4.3E+02 0.0092 32.1 15.3 124 485-611 844-967 (1259)
495 KOG3091|consensus 52.2 2.3E+02 0.0051 32.4 13.0 108 501-609 333-454 (508)
496 TIGR01618 phage_P_loop phage n 52.2 7.2 0.00016 40.1 1.3 23 133-155 14-36 (220)
497 PRK04195 replication factor C 51.6 9.8 0.00021 43.7 2.4 32 117-148 24-56 (482)
498 TIGR02977 phageshock_pspA phag 51.6 2.8E+02 0.0061 28.3 15.0 116 469-590 30-145 (219)
499 PRK00771 signal recognition pa 51.0 17 0.00038 41.2 4.3 47 102-148 58-112 (437)
500 PRK10416 signal recognition pa 50.8 14 0.00031 40.1 3.4 47 102-148 75-131 (318)
No 1
>KOG4280|consensus
Probab=100.00 E-value=2.5e-113 Score=949.72 Aligned_cols=550 Identities=50% Similarity=0.728 Sum_probs=481.0
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
...+|+|+|||||++..+...+...++.+++..+.+.+.+|. ....
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------------~~~~ 48 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPV----------------------------------AGIE 48 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCc----------------------------------cccc
Confidence 468999999999999999999999999999888888888773 2234
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
+++++|+||.||+++++|++||..++.|+|++||+||||||||||||||||||||+|. +++.+|||||+|++||.+|+
T Consensus 49 ~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~ 126 (574)
T KOG4280|consen 49 GKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHID 126 (574)
T ss_pred CCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHH
Confidence 5577899999999999999999999999999999999999999999999999999998 38889999999999999999
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
...+...|+|+|||+|||||.|+|||++.+... +.++++|+.||||+||+++.|.|++++..+|..|
T Consensus 127 ~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~-------------l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G 193 (574)
T KOG4280|consen 127 ERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKG-------------LELREDPKCGVYVENLSEMDVESAEDAQQLLVVG 193 (574)
T ss_pred hccccceEEEEeehHHHHhHHHHHHhCccCcCC-------------ceeeEcCCCceEecCcceeecCCHHHHHHHHHHH
Confidence 987777899999999999999999999886543 4559999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeec-CCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
.++|++++|.||..|||||+||+|+|++.. ..+|. .+++.|+|||||||||||++++|++|+|+|
T Consensus 194 ~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~--------------~~~~~~rlnlvDLagsEr~~~tga~G~rlk 259 (574)
T KOG4280|consen 194 LANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGL--------------MSGRSSKLNLVDLAGSERQSKTGAEGERLK 259 (574)
T ss_pred HhhcchhhccCCcccccceEEEEEEEEeecccCCCc--------------cccccceeeeeeccchhhhcccCccchhhh
Confidence 999999999999999999999999999944 23333 567889999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
||++||+||++||+||+||++++..||||||||||+||||||||||+|+|||||||++++|+||++|||||+|||.|+|+
T Consensus 260 Ea~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk 339 (574)
T KOG4280|consen 260 EATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNK 339 (574)
T ss_pred hhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC----------CCcCCC-CCCC-------CCcccchh-
Q psy11229 413 ARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPE----------PELDET-EPCV-------EPSEVIED- 473 (705)
Q Consensus 413 ~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~-------~~~~~~~~- 473 (705)
|.+|+||+++.++.|+++|+.|+.+|................. ...... .... +...+...
T Consensus 340 ~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e 419 (574)
T KOG4280|consen 340 PVINEDPKDALLRELQEEIERLKKELDPGGSPGGTDRQEAESGSEENLLKAETVISLDPNEARVADLALETEELEKRLLE 419 (574)
T ss_pred ccccCCcchhhHHHHHHHHHHHHHhhccccCcCCCCccccccccccchhhccccccccchhhccccccccccchhhhHHH
Confidence 9999999999999999999999999987654332110000000 000000 0000 00000101
Q ss_pred --hhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 474 --ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551 (705)
Q Consensus 474 --~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~ 551 (705)
+....+...+.+...+..+...+.++...+++. .+..++.+.++....++++.+++.+++..+++. ..+..
T Consensus 420 ~~k~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-----~e~~~ 492 (574)
T KOG4280|consen 420 LQKKNQELEDLRQENEFLARKRPDIESKQLVGGKN--PKLEEQQKLLERGRLELEEAKKREEELVQELEL-----PELLE 492 (574)
T ss_pred HHHHhhhhhhccccchhhhhcccchhhhceecCCC--CchHHhhhcccccccchhhhhcChhhccCCccc-----ccccc
Confidence 112233445556667778888888888888877 888899999999989999988888888887766 66788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATW 631 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~w 631 (705)
.|..++++.+.+++++.+++.++.+.+.+..+...++.++.+++.+.++++.+++++..+++++|||.++...+..+..|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~~~~~~ 572 (574)
T KOG4280|consen 493 RYSSLQEEAESKSKKLSKLLLKLLAARQEIVDIASEHLREREALEEGIRELSKELKLLLLILDNFIPTELKRIIEDELSS 572 (574)
T ss_pred ccccccccchhhHHHHHHHHHHHhhhhccccccchhhhHHHHhhhhhhhHHHHHHhhhhhhhhccCChhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy11229 632 NE 633 (705)
Q Consensus 632 de 633 (705)
++
T Consensus 573 ~~ 574 (574)
T KOG4280|consen 573 DE 574 (574)
T ss_pred cC
Confidence 75
No 2
>KOG0243|consensus
Probab=100.00 E-value=1.2e-96 Score=846.95 Aligned_cols=373 Identities=46% Similarity=0.702 Sum_probs=330.1
Q ss_pred ccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229 11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG 90 (705)
Q Consensus 11 ~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (705)
..+..-||+|+|||||++.+|....+..+|.++.....|.|...- .
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~----------------------------------~ 89 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI----------------------------------A 89 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccc----------------------------------c
Confidence 344568999999999999999999888888887655556665320 0
Q ss_pred CCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC-----CCCCCCCchHHHH
Q psy11229 91 SAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN-----NVPELKGIIPNSF 165 (705)
Q Consensus 91 ~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~-----~~~~~~GIipr~~ 165 (705)
+ ..-.++|+||+||||.+.|.+||+.++.|+|..|+.|||||||||||||+||||||+|.. ..|...|||||++
T Consensus 90 s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal 168 (1041)
T KOG0243|consen 90 S-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRAL 168 (1041)
T ss_pred c-ccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHH
Confidence 1 113689999999999999999999999999999999999999999999999999999942 3456679999999
Q ss_pred HHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCcc--ccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCH
Q psy11229 166 AHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKD--QCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNA 243 (705)
Q Consensus 166 ~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~--~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~ 243 (705)
.+||+.+... +..|.|+|||+|+|||+|+|||++... ..+.++..+.. -+..+||+|+||.++.|.++
T Consensus 169 ~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~--------~~~kggV~vkGlEEi~V~~A 238 (1041)
T KOG0243|consen 169 RQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTI--------VDGKGGVIVKGLEEIIVTNA 238 (1041)
T ss_pred HHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcc--------cCCcCcEEEecceeeeecch
Confidence 9999999875 478999999999999999999998765 33333322211 15678999999999999999
Q ss_pred HHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCCCcccc
Q psy11229 244 DDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQA 322 (705)
Q Consensus 244 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~ 322 (705)
.|+.++|.+|...|++++|.||..|||||+||+|+|..... ..|+ .-++.|||+||||||||..+
T Consensus 239 ~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge--------------elvK~GKLNLVDLAGSENI~ 304 (1041)
T KOG0243|consen 239 DEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE--------------ELVKIGKLNLVDLAGSENIS 304 (1041)
T ss_pred hHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch--------------hhHhhcccceeecccccccc
Confidence 99999999999999999999999999999999999987662 2333 66889999999999999999
Q ss_pred ccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHH
Q psy11229 323 KTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRY 402 (705)
Q Consensus 323 ~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrf 402 (705)
++|+.+.|.+||+.||+||.+||+||.||+++. .|||||+|||||||||||||.+||+|||||||+..+++||++||.|
T Consensus 305 RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEY 383 (1041)
T KOG0243|consen 305 RSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEY 383 (1041)
T ss_pred ccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999965 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCC-cchHHHHHHHHHHHHHHHHHhhcCC
Q psy11229 403 ASRVKKICNKARVNQD-PKDALLIKYQKEISELKKKLEEASV 443 (705)
Q Consensus 403 a~rak~I~n~~~~n~~-~~~~~l~~~~~ei~~Lk~~l~~~~~ 443 (705)
|.|||+|+|+|.+|+. .+++++.+|-.||++||..|..+..
T Consensus 384 A~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 384 AHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999986 4789999999999999999977643
No 3
>KOG0245|consensus
Probab=100.00 E-value=2.3e-95 Score=819.92 Aligned_cols=367 Identities=43% Similarity=0.701 Sum_probs=327.6
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
+..+|+|+||||||+.+|....+..+|.+. ++.++|.+|++. .
T Consensus 2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~--gn~ttii~~~~~-----------------------------------k 44 (1221)
T KOG0245|consen 2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQ--GNTTTIINPKGS-----------------------------------K 44 (1221)
T ss_pred CCCceEEEEEeccchhhhhhcccceEEEec--CCceeeecCCCc-----------------------------------c
Confidence 367899999999999999988777777764 556777777321 1
Q ss_pred CCCeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHH
Q psy11229 94 EPPKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFA 166 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~ 166 (705)
. ...|+||+.|+.. ++|..||+.++.|+++.+|+|||+||||||||||||||||+|.. +|+..|||||.++
T Consensus 45 ~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~-~~~e~GIIPrlCE 122 (1221)
T KOG0245|consen 45 D-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQ-EPDEPGIIPRLCE 122 (1221)
T ss_pred c-CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccC-CCCCCCchhHHHH
Confidence 1 2239999999654 68999999999999999999999999999999999999999987 4556699999999
Q ss_pred HHHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccC-CCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHH
Q psy11229 167 HIFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLS-KNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD 244 (705)
Q Consensus 167 ~lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~-~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~ 244 (705)
+||.+|... ..+..|.|.|||+|||||.|+|||+ |.++..| .|||+|-.|+||.+|+.+.|.|..
T Consensus 123 eLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~L-------------RVREHP~lGPYVedLS~~aV~Sy~ 189 (1221)
T KOG0245|consen 123 ELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGL-------------RVREHPILGPYVEDLSKLAVTSYA 189 (1221)
T ss_pred HHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCc-------------eeeccCccChhHhHhhhcccccHH
Confidence 999999865 3468999999999999999999999 6555544 459999999999999999999999
Q ss_pred HHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcccccc
Q psy11229 245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKT 324 (705)
Q Consensus 245 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t 324 (705)
|+..+|..|++.|++++|+||+.|||||+||+|.+.+........ -.+.++|+++|||||||||++.+
T Consensus 190 dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~------------l~sek~SKIsLVDLAGSERasst 257 (1221)
T KOG0245|consen 190 DIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG------------LDSEKVSKISLVDLAGSERASST 257 (1221)
T ss_pred HHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC------------CcceeeeeeeEEeccCccccccc
Confidence 999999999999999999999999999999999998865221110 14678999999999999999999
Q ss_pred CCccccHHHHHHhhhhHHHHHHHHHHHhcC------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHH
Q psy11229 325 GASGQRLKEASKINLSLSTLGNVISALVDG------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIS 398 (705)
Q Consensus 325 ~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETls 398 (705)
|+.|+|||||.+||+||++||.||+||++. ++.+||||||.||+||+++|||||||+|||+|||++.||+|||+
T Consensus 258 Ga~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLS 337 (1221)
T KOG0245|consen 258 GANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLS 337 (1221)
T ss_pred CCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHH
Confidence 999999999999999999999999999872 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhcCCC
Q psy11229 399 TLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVP 444 (705)
Q Consensus 399 TLrfa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~~~~ 444 (705)
|||||+|||+|+|+++||+||...+||+|++||.+||..|...+..
T Consensus 338 TLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~ 383 (1221)
T KOG0245|consen 338 TLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLG 383 (1221)
T ss_pred HHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999876543
No 4
>KOG0240|consensus
Probab=100.00 E-value=7e-90 Score=742.71 Aligned_cols=350 Identities=47% Similarity=0.693 Sum_probs=316.8
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
...+|+|+||+||++..|...+...++.+.+...+|.+... .
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~--------------------------------------~ 46 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT--------------------------------------K 46 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc--------------------------------------c
Confidence 56899999999999999988877766655443334443321 1
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
. .++|.||+||.|+++|.+||+.++.|+|++||.||||||||||||||||||||.|...+|...|||||++.+||++|.
T Consensus 47 ~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iy 125 (607)
T KOG0240|consen 47 E-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIY 125 (607)
T ss_pred c-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHh
Confidence 2 278999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
..+.+..|.|.|||||||+|+|+|||++.+.. +.|++|...++||+|+++..|.+.++++.++..|
T Consensus 126 s~~~n~efhVkVsy~EIYmEKi~DLL~~~k~n--------------lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g 191 (607)
T KOG0240|consen 126 SMEENLEFHVKVSYFEIYMEKIRDLLDPEKTN--------------LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEG 191 (607)
T ss_pred cCcccceEEEEEEeehhhhhHHHHHhCcccCC--------------ceeecccCCCceecCceeEEecCHHHHHHHHhcc
Confidence 99889999999999999999999999976432 4569999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
..+|+++.|.||.+|||||+||+|+|.+..... .....|+|.||||||||+.+++|+.|.-+.|
T Consensus 192 ~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~----------------~~~~~gkLyLVDLaGSEkvsKtga~g~vleE 255 (607)
T KOG0240|consen 192 KSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED----------------KRKLSGKLYLVDLAGSEKVSKTGAEGAVLEE 255 (607)
T ss_pred cccchhhhccccccccccceEEEEEEEeccccc----------------hhhccccEEEEEcccccccCCCCccchhHHH
Confidence 999999999999999999999999999876433 3467799999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~ 413 (705)
|.+||+||+|||+||+||++|..+|||||||||||||||+|||||+|.+|+|+||+..+..||.+||+|++|||.|+|.+
T Consensus 256 aK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v 335 (607)
T KOG0240|consen 256 AKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTV 335 (607)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchh
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcc-hHHHHHHHHHHH
Q psy11229 414 RVNQDPK-DALLIKYQKEIS 432 (705)
Q Consensus 414 ~~n~~~~-~~~l~~~~~ei~ 432 (705)
.+|.... +++.++|..+-.
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd 355 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKD 355 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHh
Confidence 9998764 455566554433
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=6.7e-85 Score=755.75 Aligned_cols=316 Identities=44% Similarity=0.710 Sum_probs=282.6
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC-------CCCCCCchHHHHHHHH
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN-------VPELKGIIPNSFAHIF 169 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~-------~~~~~GIipr~~~~lF 169 (705)
+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|... .....|||||++.+||
T Consensus 132 qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF 211 (1320)
T PLN03188 132 QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLF 211 (1320)
T ss_pred cEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999643 2345799999999999
Q ss_pred Hhhhhc-----CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHH
Q psy11229 170 GHIAKA-----DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNAD 244 (705)
Q Consensus 170 ~~i~~~-----~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~ 244 (705)
..|... +....|.|+|||+|||||.|||||++... .+.|++++.+|+||.||+++.|.|++
T Consensus 212 ~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k--------------~L~IRED~kgGv~VeGLTEv~V~S~E 277 (1320)
T PLN03188 212 ARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK--------------NLQIREDVKSGVYVENLTEEYVKTMK 277 (1320)
T ss_pred HHHHhhhhhccccccceEEEEEEEeeecCcceeccccccC--------------CceEEEcCCCCeEeCCCeEEeCCCHH
Confidence 998642 23567999999999999999999987532 14569999999999999999999999
Q ss_pred HHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcccccc
Q psy11229 245 DMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKT 324 (705)
Q Consensus 245 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t 324 (705)
++..+|..|..+|++++|.||..|||||+||+|+|++....... ....+..|+|+|||||||||..++
T Consensus 278 D~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~d------------g~ss~r~SkLnLVDLAGSER~kkT 345 (1320)
T PLN03188 278 DVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVAD------------GLSSFKTSRINLVDLAGSERQKLT 345 (1320)
T ss_pred HHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCC------------CCcceEEEEEEEEECCCchhcccc
Confidence 99999999999999999999999999999999999865421111 013467899999999999999999
Q ss_pred CCccccHHHHHHhhhhHHHHHHHHHHHhc----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229 325 GASGQRLKEASKINLSLSTLGNVISALVD----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL 400 (705)
Q Consensus 325 ~~~g~rlkE~~~IN~SL~aL~~vI~aL~~----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL 400 (705)
++.|.+++|+.+||+||++||+||.+|++ ++..||||||||||+||||+|||||+|+|||||||+..+++||++||
T Consensus 346 ga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTL 425 (1320)
T PLN03188 346 GAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTL 425 (1320)
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHH
Confidence 99999999999999999999999999985 45579999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCcch------HHHHHHHHHHHHHHHHH
Q psy11229 401 RYASRVKKICNKARVNQDPKD------ALLIKYQKEISELKKKL 438 (705)
Q Consensus 401 rfa~rak~I~n~~~~n~~~~~------~~l~~~~~ei~~Lk~~l 438 (705)
+||+||++|+|+|.+|....+ .++++|+.||.+|+..+
T Consensus 426 rFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 426 RFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987543 46677788888887654
No 6
>KOG0241|consensus
Probab=100.00 E-value=4.1e-85 Score=723.27 Aligned_cols=368 Identities=45% Similarity=0.693 Sum_probs=328.0
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
..+|||+|||||++.+|.+....++|.|+..+..+...+|.. .-.-..
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~--------------------------------~~~~~k 50 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNH--------------------------------KIGESK 50 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccc--------------------------------cccccC
Confidence 578999999999999999999999999986654443332210 001124
Q ss_pred CCeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229 95 PPKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH 167 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~ 167 (705)
++++|.||++|.+. +.|+.||+.++.-+|+++|+|||+||||||||||||||||+|..+.| |||||.+..
T Consensus 51 ~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Qp---GiIPrlc~~ 127 (1714)
T KOG0241|consen 51 GPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQP---GIIPRLCES 127 (1714)
T ss_pred CCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCC---CchhHHHHH
Confidence 58999999999764 68999999999999999999999999999999999999999998877 999999999
Q ss_pred HHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229 168 IFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246 (705)
Q Consensus 168 lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~ 246 (705)
||..|... .+...|.|.|||+|||||++||||.|.... ..+.|+++.-.|.||.||+.+.|.|++|+
T Consensus 128 lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ss------------qtlkVrehsvlGp~vdGLS~laV~S~qdI 195 (1714)
T KOG0241|consen 128 LFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSS------------QTLKVREHSVLGPYVDGLSQLAVTSFQDI 195 (1714)
T ss_pred HHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCc------------ceeEEeecccccccccchhhhhcccHHHH
Confidence 99999875 346789999999999999999999886543 34778999999999999999999999999
Q ss_pred HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326 (705)
Q Consensus 247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~ 326 (705)
..+|..|+++|++++|+||..|||||+||.|.|.+.--....+. ..-.+|+|.|||||||||.+++|+
T Consensus 196 d~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~------------SgeKvsklslVDLAgserasktga 263 (1714)
T KOG0241|consen 196 DSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGH------------SGEKVSKLSLVDLAGSERASKTGA 263 (1714)
T ss_pred HHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCc------------chhheeeeeEEEeccccccccccc
Confidence 99999999999999999999999999999999987642211111 223579999999999999999999
Q ss_pred ccccHHHHHHhhhhHHHHHHHHHHHhc-----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHH
Q psy11229 327 SGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLR 401 (705)
Q Consensus 327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~-----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLr 401 (705)
.|.|++|+++||+||++||.||+||++ |+.++||||||.||+||||+|||||+|+||+||||++.||+|||+|||
T Consensus 264 ~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLR 343 (1714)
T KOG0241|consen 264 AGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLR 343 (1714)
T ss_pred hhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHH
Confidence 999999999999999999999999987 345799999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q psy11229 402 YASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEA 441 (705)
Q Consensus 402 fa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~ 441 (705)
||.|||+|+|.+.+|+||....++++++|++.|+.+|..+
T Consensus 344 YadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 344 YADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999763
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.7e-83 Score=694.40 Aligned_cols=325 Identities=47% Similarity=0.743 Sum_probs=286.5
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
.+|+|+|||||++..|...+...++.+...+ .+.+.. .+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-~~~~~~----------------------------------------~~ 39 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD-TLVWHS----------------------------------------HP 39 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCC-cEEeeC----------------------------------------CC
Confidence 4799999999999999876666666554322 222211 12
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCC-----CCCCchHHHHHHHHH
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVP-----ELKGIIPNSFAHIFG 170 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~-----~~~GIipr~~~~lF~ 170 (705)
++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+ ...|||||++++||.
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~ 119 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS 119 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999976533 357999999999999
Q ss_pred hhhhc----CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229 171 HIAKA----DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246 (705)
Q Consensus 171 ~i~~~----~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~ 246 (705)
.+... .....|.|+|||+|||||+|||||++... .+.+++++.+|++|.|++++.|.|++|+
T Consensus 120 ~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~ 185 (337)
T cd01373 120 LIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR--------------NLKIREDIKKGVYVENLTEEYVSSYEDV 185 (337)
T ss_pred HHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC--------------CceEEECCCCCEEeCCCEEEEeCCHHHH
Confidence 98654 23568999999999999999999986532 1456999999999999999999999999
Q ss_pred HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326 (705)
Q Consensus 247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~ 326 (705)
..+|..|..+|++++|.+|..|||||+||+|.|.+.....+. ...+.|+|+|||||||||..++++
T Consensus 186 ~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~--------------~~~~~s~l~~VDLAGSEr~~~~~~ 251 (337)
T cd01373 186 YQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS--------------TNIRTSRLNLVDLAGSERQKDDGA 251 (337)
T ss_pred HHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC--------------CcEEEEEEEEEECCCCCcccccCC
Confidence 999999999999999999999999999999999876532221 346679999999999999999999
Q ss_pred ccccHHHHHHhhhhHHHHHHHHHHHhc---CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHH
Q psy11229 327 SGQRLKEASKINLSLSTLGNVISALVD---GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYA 403 (705)
Q Consensus 327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~---~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa 403 (705)
.|.+++|+..||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||
T Consensus 252 ~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa 331 (337)
T cd01373 252 EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFA 331 (337)
T ss_pred ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHH
Confidence 999999999999999999999999975 34589999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q psy11229 404 SRVKKI 409 (705)
Q Consensus 404 ~rak~I 409 (705)
.|||+|
T Consensus 332 ~rak~I 337 (337)
T cd01373 332 QRAKLI 337 (337)
T ss_pred HHhhcC
Confidence 999987
No 8
>KOG0242|consensus
Probab=100.00 E-value=1.5e-84 Score=746.89 Aligned_cols=359 Identities=45% Similarity=0.707 Sum_probs=315.1
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
.++|.|+|||||++++|...+....+.+..+...+....+. .+. ..
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------------------------~~~---~~ 50 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKS-------------------------------LPE---KS 50 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeecccc-------------------------------ccc---cc
Confidence 46899999999999997555555545443222111111110 000 01
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
.+..|.||+||+++++|++||+..++|+|++|+.||||||||||||||||||||.|...+| ||||+++.+||+.|..
T Consensus 51 ~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~P---Gii~la~~dif~~I~~ 127 (675)
T KOG0242|consen 51 KPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDP---GIIPLAMKDIFEKIDK 127 (675)
T ss_pred cccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCC---CeeehHHHHHHHHHHh
Confidence 1578999999999999999999999999999999999999999999999999999999888 9999999999999998
Q ss_pred cCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229 175 ADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254 (705)
Q Consensus 175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~ 254 (705)
.. ...|.|.|||+|||||.|+|||+++... +.|+||+.+|++|.||++..|.|++++..+|..|+
T Consensus 128 ~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~--------------L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~ 192 (675)
T KOG0242|consen 128 SG-EREFSVRVSYLEIYNERIRDLLNPDGGD--------------LRLREDSEGGIVVPGLTEETVSSREELLELLQKGN 192 (675)
T ss_pred cC-CceeEEEEEEEEEeccccccccCCCCCC--------------ceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhh
Confidence 76 8899999999999999999999987543 55699999999999999999999999999999999
Q ss_pred ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA 334 (705)
Q Consensus 255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~ 334 (705)
++|+++.|.||..|||||+||+|.|++.....+ . +.|+|+|||||||||.++|++.|.|++||
T Consensus 193 ~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG 255 (675)
T KOG0242|consen 193 KNRTTGETNLNEQSSRSHAILRITVESRGREAS----------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEG 255 (675)
T ss_pred ccCcccccccccccchhhheeeEEEEecccccc----------------c-hhheehhhhhhhhhhhhhhhccceecccc
Confidence 999999999999999999999999988653211 1 57899999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229 335 SKINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~ 413 (705)
++||+||++||+||.+|.++ ...||||||||||||||++||||++|+|||||+|+..+|+||.+||+||+|||.|++++
T Consensus 256 ~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~ 335 (675)
T KOG0242|consen 256 AHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKA 335 (675)
T ss_pred chhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999998 45689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcchHHH-HHHHHHHHHHHHHHhhcC
Q psy11229 414 RVNQDPKDALL-IKYQKEISELKKKLEEAS 442 (705)
Q Consensus 414 ~~n~~~~~~~l-~~~~~ei~~Lk~~l~~~~ 442 (705)
.+|....+..+ ..++.+|..|+.++....
T Consensus 336 ~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 336 QVNVILSDKALLKYLQREIAELEAELERLK 365 (675)
T ss_pred ccceecchhhhhHHHHHHHHHHHHHHHhhc
Confidence 99988776544 445699999999997754
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.3e-83 Score=689.32 Aligned_cols=336 Identities=44% Similarity=0.709 Sum_probs=295.9
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|+|||||||+++.|...+...+|.+... .+.+.+|....... +.+. .....+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~--~~v~~~~~~~~~~~------------------------~~~~-~~~~~~ 53 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD--RMLVFDPKDEEDAF------------------------RNLR-ARRNKE 53 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC--CEEEEcCCcccccc------------------------cchh-cccCCc
Confidence 69999999999999988888888888643 33344442100000 0001 112346
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~ 176 (705)
+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|...++ |||||++++||+.++...
T Consensus 54 ~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Giipr~~~~LF~~i~~~~ 130 (338)
T cd01370 54 LKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDP---GLMVLTMKDLFDKIEERK 130 (338)
T ss_pred eEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCC---chHHHHHHHHHHhhhhcc
Confidence 89999999999999999999999999999999999999999999999999999987655 999999999999999887
Q ss_pred CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229 177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256 (705)
Q Consensus 177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~ 256 (705)
....|.|+|||+|||||+|+|||++... .+.++++++++++|.|++++.|.|++|++.+|..|.++
T Consensus 131 ~~~~~~v~vS~~EIyne~v~DLL~~~~~--------------~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~ 196 (338)
T cd01370 131 DDKEFEVSLSYLEIYNETIRDLLSPSSG--------------PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRN 196 (338)
T ss_pred cCceEEEEEEEEEEECCEEEECCCCCCC--------------CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999987522 25569999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336 (705)
Q Consensus 257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~ 336 (705)
|++++|.+|..|||||+||+|+|.+.....+. ......|+|+|||||||||..+++..|.+++|+..
T Consensus 197 R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~-------------~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~ 263 (338)
T cd01370 197 RTQEPTEANATSSRSHAVLQITVRQKDRTASI-------------NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGAN 263 (338)
T ss_pred cccccccccCccCcceEEEEEEEEEEecCCCC-------------CCcEEEEEEEEEECCCCccccccCCCCccccccch
Confidence 99999999999999999999999887532110 14567899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 337 INLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 337 IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 264 IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 264 INRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999876 389999999999999999999999999999999999999999999999999986
No 10
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.2e-81 Score=677.54 Aligned_cols=332 Identities=71% Similarity=1.104 Sum_probs=305.9
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
++|+|+|||||+++.|...++..++.+++.++.|.+.+|.. .....
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------~~~~~ 46 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKA----------------------------------DAKEP 46 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcc----------------------------------cccCC
Confidence 68999999999999999999999999999999999987731 11235
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
+++|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+...|||||++++||+.+...
T Consensus 47 ~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~ 126 (333)
T cd01371 47 PKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA 126 (333)
T ss_pred CceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999886667899999999999999876
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
. ...|.|+|||+|||||+|+|||++..... +.+++++.++++|.|++++.|.|++++..+|..|.+
T Consensus 127 ~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~-------------l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~ 192 (333)
T cd01371 127 E-NVQFLVRVSYLEIYNEEVRDLLGKDQKKK-------------LELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNK 192 (333)
T ss_pred c-CccEEEEEEEEEeeCCeeeeCCCCCCCCc-------------eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHh
Confidence 5 47899999999999999999998765332 456999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCC-CccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLG-GKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA 334 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~ 334 (705)
+|.+++|.+|..|||||+||+|+|++..... +. ..+..|+|+|||||||||..+++..|.+++|+
T Consensus 193 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~--------------~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~ 258 (333)
T cd01371 193 NRSVGATNMNEDSSRSHSIFTITIECSEKGEDGE--------------NHIRVGKLNLVDLAGSERQSKTGATGDRLKEA 258 (333)
T ss_pred hCccccccccCCCCCCcEEEEEEEEEEeccCCCC--------------CcEEEEEEEEEECCCCCcccccCCchhhhHhH
Confidence 9999999999999999999999998876432 12 45778999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
.+||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus 259 ~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 259 TKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999988779999999999999999999999999999999999999999999999999986
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=8.3e-81 Score=675.18 Aligned_cols=340 Identities=35% Similarity=0.584 Sum_probs=293.3
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
.+|+|||||||++..|...+...+|.+. +++.|.+..|....... +.......
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~ 53 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARK--------------------------SERNGGQK 53 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccc--------------------------cccccCCC
Confidence 4799999999999999887778888764 45678777663210000 01111335
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+ |||||++++||+.+..
T Consensus 54 ~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~---Gli~r~~~~lF~~~~~- 129 (345)
T cd01368 54 ETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDG---GILPRSLDVIFNSIGG- 129 (345)
T ss_pred ceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHHh-
Confidence 789999999999999999999999999999999999999999999999999999987554 9999999999999865
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
|.|+|||+|||||+|+|||++..... .....+.++++++++++|.|++++.|.|++|+..+|..|.+
T Consensus 130 -----~~v~~S~~EIyne~v~DLL~~~~~~~--------~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~ 196 (345)
T cd01368 130 -----YSVFVSYVEIYNNYIYDLLEDSPSST--------KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQK 196 (345)
T ss_pred -----eeEEEEEEEEeCCEeEeCCCCccccc--------cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhc
Confidence 89999999999999999998765420 11223677999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~ 335 (705)
+|.+++|.+|..|||||+||+|+|.+........ .......+..|+|+|||||||||..++++.|.+++|+.
T Consensus 197 ~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~--------~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~ 268 (345)
T cd01368 197 NRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD--------VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAG 268 (345)
T ss_pred cceeccccCcCCCCCceEEEEEEEEEeccCcccc--------cccCCCceEEEEEEEEecccccccccccccchhhhhhh
Confidence 9999999999999999999999998765321110 00112457789999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhcC-----CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 336 KINLSLSTLGNVISALVDG-----KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~~-----~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
.||+||++|++||.+|++. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 269 ~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 269 NINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999873 45899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.5e-80 Score=673.86 Aligned_cols=341 Identities=46% Similarity=0.733 Sum_probs=303.7
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
++|+|+|||||++..|...+...++.++. ..|.|.+|.... .....
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~--------------------------------~~~~~ 46 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAAD--------------------------------ATRKK 46 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCccc--------------------------------ccccC
Confidence 58999999999999999988888888765 688888773100 01234
Q ss_pred CeeEeeceeeCCC-------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHH
Q psy11229 96 PKTFTFDTVFDAN-------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHI 168 (705)
Q Consensus 96 ~~~F~FD~Vf~~~-------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~l 168 (705)
.+.|.||+||+++ ++|++||+.++.|+|+++++|||+||||||||||||||||+|....+ |||||++++|
T Consensus 47 ~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~---Gli~r~~~~L 123 (356)
T cd01365 47 PKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEK---GIIPRLCEEL 123 (356)
T ss_pred ceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCC---chHHHHHHHH
Confidence 6889999999999 99999999999999999999999999999999999999999987654 9999999999
Q ss_pred HHhhhhcCC-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHH
Q psy11229 169 FGHIAKADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247 (705)
Q Consensus 169 F~~i~~~~~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~ 247 (705)
|+.+..... ...|.|+|||+|||||+|||||++.... ...+.+++++..|++|.|++++.|.|++|+.
T Consensus 124 f~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~-----------~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~ 192 (356)
T cd01365 124 FQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKN-----------KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ 192 (356)
T ss_pred HHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccC-----------CcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 999987654 5789999999999999999999876411 1125668999999999999999999999999
Q ss_pred HHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCc
Q psy11229 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGAS 327 (705)
Q Consensus 248 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~ 327 (705)
.++..|.++|.+++|.+|..|||||+||+|.|.+....... .......|+|+|||||||||..+++..
T Consensus 193 ~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~ 260 (356)
T cd01365 193 NLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET------------DLTTEKVSKISLVDLAGSERASSTGAE 260 (356)
T ss_pred HHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC------------CCCceEEEEEEeeeccccccccccccc
Confidence 99999999999999999999999999999999876532110 114567899999999999999999999
Q ss_pred cccHHHHHHhhhhHHHHHHHHHHHhcC-------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229 328 GQRLKEASKINLSLSTLGNVISALVDG-------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL 400 (705)
Q Consensus 328 g~rlkE~~~IN~SL~aL~~vI~aL~~~-------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL 400 (705)
|.+++|+..||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|+||+||||+..+++||++||
T Consensus 261 ~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL 340 (356)
T cd01365 261 GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTL 340 (356)
T ss_pred chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHH
Confidence 999999999999999999999999864 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccc
Q psy11229 401 RYASRVKKICNKARVN 416 (705)
Q Consensus 401 rfa~rak~I~n~~~~n 416 (705)
+||+|+++|+|.|++|
T Consensus 341 ~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 341 RYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHhhccCccccC
Confidence 9999999999999876
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.2e-79 Score=669.02 Aligned_cols=341 Identities=45% Similarity=0.681 Sum_probs=305.4
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
.||+|+|||||+...|...++..++.++.....|.+.++.. ....
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----------------------------------~~~~ 46 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----------------------------------DKQS 46 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----------------------------------cccc
Confidence 48999999999999998888888888887777777765410 1123
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC--------CCCCCchHHHHHH
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV--------PELKGIIPNSFAH 167 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~--------~~~~GIipr~~~~ 167 (705)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|.... ++..|||||++.+
T Consensus 47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~ 126 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ 126 (352)
T ss_pred ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999998654 4568999999999
Q ss_pred HHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec--CCCcEEEccceEEEcCCHHH
Q psy11229 168 IFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER--PDIGVYVKDLSAYIANNADD 245 (705)
Q Consensus 168 lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~gv~v~~l~~~~v~s~~e 245 (705)
||+.+... ...|.|+|||+|||||+|+|||++.... ...+.++++ +.+|++|.|++++.|.|++|
T Consensus 127 Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~-----------~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e 193 (352)
T cd01364 127 LFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSESDL-----------NKPLRIFDDTNNKGGVVIQGLEEITVNNANE 193 (352)
T ss_pred HHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCcccc-----------CccceEEeccCcCCCEEeCCcEEEEeCCHHH
Confidence 99999875 5689999999999999999999876411 112455888 58999999999999999999
Q ss_pred HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325 (705)
Q Consensus 246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~ 325 (705)
+..++..|.++|.+++|.+|..|||||+||+|.|.+....... ...+..|+|+|||||||||..+++
T Consensus 194 ~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~-------------~~~~~~s~l~~VDLAGsE~~~~~~ 260 (352)
T cd01364 194 GLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISG-------------EELVKIGKLNLVDLAGSENIGRSG 260 (352)
T ss_pred HHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCC-------------CccEEEEEEEEEECCCcccccccc
Confidence 9999999999999999999999999999999999876532111 134668999999999999999999
Q ss_pred CccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHH
Q psy11229 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASR 405 (705)
Q Consensus 326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~r 405 (705)
+.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|
T Consensus 261 ~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~ 339 (352)
T cd01364 261 AENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHR 339 (352)
T ss_pred CcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCC
Q psy11229 406 VKKICNKARVNQD 418 (705)
Q Consensus 406 ak~I~n~~~~n~~ 418 (705)
|++|+|.|.+|++
T Consensus 340 ~~~i~n~P~~n~~ 352 (352)
T cd01364 340 AKNIKNKPEVNQK 352 (352)
T ss_pred HhhccCccccCCC
Confidence 9999999999975
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.7e-79 Score=654.53 Aligned_cols=321 Identities=40% Similarity=0.591 Sum_probs=287.9
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
.+|+|+|||||+++.|...+...++.++.. ++|.+.+|..... ......
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~------------------------------~~~~~~ 49 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVD------------------------------LTKYIE 49 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccc------------------------------cccccC
Confidence 489999999999999988888888888654 5788876631100 001123
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
.+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+ |||||++++||+.++..
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Glipr~~~~lf~~~~~~ 126 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQE---GLYALAARDIFRLLAQP 126 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcC---ccHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999999987655 99999999999999875
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
. ..|.|+|||+|||||.|+|||++.. . +.+++++.++++|.|++++.|.|++|+..+|..|.+
T Consensus 127 ~--~~~~v~~S~~EIy~e~v~DLL~~~~--~-------------l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~ 189 (322)
T cd01367 127 N--DDLGVTVSFFEIYGGKLFDLLNDRK--R-------------LSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNS 189 (322)
T ss_pred c--cccEEEEEEEeeecCchhhhccCcc--c-------------eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhc
Confidence 4 6799999999999999999998732 1 456999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-CccccHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQRLKEA 334 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g~rlkE~ 334 (705)
+|.+++|.+|..|||||+||+|.|..... ....|+|+|||||||||..+++ ..+++++|+
T Consensus 190 ~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~ 250 (322)
T cd01367 190 LRTTGSTGANDQSSRSHAILQIILKNKKL-------------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEG 250 (322)
T ss_pred ccccccCcCCCCcccceEEEEEEEEEecC-------------------CeeEEEEEEeecCCccccccccccchhhHHhH
Confidence 99999999999999999999999987542 2457999999999999998876 578999999
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 251 ~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 251 AEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999876 899999999999999999999999999999999999999999999999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.6e-78 Score=651.94 Aligned_cols=324 Identities=54% Similarity=0.821 Sum_probs=296.3
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
++|+|+|||||++..|...+...++.+... ..|.+.++ ..
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~---------------------------------------~~ 41 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGS---------------------------------------DD 41 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCC---------------------------------------CC
Confidence 689999999999999977777777777543 45665433 12
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
.+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|....+...|||||++++||+.+...
T Consensus 42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~ 121 (325)
T cd01369 42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM 121 (325)
T ss_pred ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999999999999999999999886667899999999999999888
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
.....|.|++||+|||||.|+|||++... .+.+++++..|++|.|++++.|.|++|+..++..|.+
T Consensus 122 ~~~~~~~v~~S~~EIy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~ 187 (325)
T cd01369 122 DENLEFHVKVSYLEIYMEKIRDLLDVSKD--------------NLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKS 187 (325)
T ss_pred cCCceEEEEEEEEEEECCChhhcccCccC--------------CceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHh
Confidence 77788999999999999999999987632 1456899999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~ 335 (705)
+|.+++|.+|..|||||+||+|.|.+..... .....|+|+|||||||||..++++.|.+++|+.
T Consensus 188 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~ 251 (325)
T cd01369 188 NRAVASTNMNEESSRSHSIFLITLKQENVET----------------GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAK 251 (325)
T ss_pred hcccccCcCCCccccccEEEEEEEEEEecCC----------------CCEEEEEEEEEECCCCCcccccCCcchhHHHHH
Confidence 9999999999999999999999998765322 335689999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 336 KINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
.||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987789999999999999999999999999999999999999999999999999986
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.2e-77 Score=651.15 Aligned_cols=335 Identities=45% Similarity=0.680 Sum_probs=297.4
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|+|+||+||++..|...+...++.+.+.+..+.+.+ +
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------------------------------------~ 39 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------------------------------------D 39 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------------------------------------C
Confidence 7999999999999998888888888877666665532 4
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC---CCCCCchHHHHHHHHHhhh
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~~~~GIipr~~~~lF~~i~ 173 (705)
+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|.... ....|||||++++||+.+.
T Consensus 40 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~ 119 (341)
T cd01372 40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKID 119 (341)
T ss_pred cEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999997532 4567999999999999999
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
.......|.|.|||+|||||.|+|||++.... ...+.+++++.++++|.|++++.|.|++|++.+|..|
T Consensus 120 ~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~-----------~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g 188 (341)
T cd01372 120 EKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE-----------KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQG 188 (341)
T ss_pred hccccceEEEEEEEEEeECCeeecCCCCcccC-----------CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHH
Confidence 88767899999999999999999999876410 1125669999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
.++|.+++|.+|..|||||+||+|.|.+......... ...+.......|+|+||||||||+..++++.|.+++|
T Consensus 189 ~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~------~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e 262 (341)
T cd01372 189 SLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP------MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKE 262 (341)
T ss_pred HHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc------ccccCCCceeeEEEEEEECCCCcccccccCchhHhHH
Confidence 9999999999999999999999999988764211000 0001124567899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC 410 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 410 (705)
+..||+||++|++||.+|+.+.. .|||||+||||+||+|+||||++|+||+||||+..+++||++||+||+||++|+
T Consensus 263 ~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 263 GISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999998653 799999999999999999999999999999999999999999999999999985
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.8e-77 Score=641.85 Aligned_cols=315 Identities=41% Similarity=0.623 Sum_probs=280.2
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCC----CEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLN----GIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~----~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
+|+|+|||||+.+.|. +...++.+...+ ..|.+.+| ..
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~----------------------------------~~-- 42 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENP----------------------------------RN-- 42 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCC----------------------------------CC--
Confidence 6999999999999883 334444443221 24555444 11
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI 172 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i 172 (705)
...++.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+ |||||++++||+.+
T Consensus 43 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~---Glipr~~~~Lf~~~ 119 (319)
T cd01376 43 RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEP---GLIPRTLSDLLRMG 119 (319)
T ss_pred CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCcc---chHHHHHHHHHHHH
Confidence 123678999999999999999999999999999999999999999999999999999987655 99999999999988
Q ss_pred hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
... ...|.|++||+|||||.|+|||++... .+.++++++++++|.|++++.|.|++|+..++..
T Consensus 120 ~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 183 (319)
T cd01376 120 RKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKK--------------ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIP 183 (319)
T ss_pred hhc--cccceEEEEEEEEECCEeeEccCCCCC--------------CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHH
Confidence 765 367999999999999999999987522 1456999999999999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|.+++|.+|..|||||+||+|.|.+... .....|+|+|||||||||..+++..|.+++
T Consensus 184 ~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~ 245 (319)
T cd01376 184 ASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS------------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLK 245 (319)
T ss_pred HHhhhccccCcCCCccCCCeEEEEEEEEEECC------------------CceEEEEEEEEECCCCCcccccCCccchhh
Confidence 99999999999999999999999999987642 225679999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||...+++|||+||+||+|||
T Consensus 246 e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 246 ESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999865 899999999999999999999999999999999999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.1e-77 Score=640.77 Aligned_cols=320 Identities=49% Similarity=0.775 Sum_probs=288.2
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|+|+||+||+...|.. +...++.++.. +.|.+.+| ...
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-~~v~~~~~---------------------------------------~~~ 39 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-NTISLEES---------------------------------------TPG 39 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-CEEEEcCC---------------------------------------CCC
Confidence 69999999999999873 45566666653 45555433 125
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~ 176 (705)
+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|...++ |||||++++||..+....
T Consensus 40 ~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~---Gli~r~~~~lf~~~~~~~ 116 (321)
T cd01374 40 QSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEP---GIIPLAVRDIFQRIQDTP 116 (321)
T ss_pred eEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCC---chHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999987555 999999999999997765
Q ss_pred CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229 177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256 (705)
Q Consensus 177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~ 256 (705)
+..|.|+|||+|||||.|+|||++... .+.+++++..|++|.|++++.|.|++++..+|..|.++
T Consensus 117 -~~~~~v~~S~~Eiy~e~v~DLL~~~~~--------------~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~ 181 (321)
T cd01374 117 -DREFLLRVSYLEIYNEKIKDLLSPSPQ--------------ELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKN 181 (321)
T ss_pred -CceEEEEEEEEEEEcCEeEEccCCCCC--------------CceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhc
Confidence 678999999999999999999988742 24569999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336 (705)
Q Consensus 257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~ 336 (705)
|.+++|.+|..|||||+||+|+|.+...... ..+....|+|+|||||||||..+.+ .+.+++|+.+
T Consensus 182 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-------------~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~ 247 (321)
T cd01374 182 RHVGETDFNERSSRSHTIFQLTIESRERGDS-------------ESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSF 247 (321)
T ss_pred cccccCcCCCccccccEEEEEEEEEEecCCC-------------CCCcEEEEEEEEEECCCCCccccCC-CCccccccch
Confidence 9999999999999999999999988763321 1145778999999999999999998 8999999999
Q ss_pred hhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 337 INLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 337 IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
||+||++|++||.+|+.+. ..||||||||||+||+|+||||++|+||+||||...+++||++||+||+|+++|
T Consensus 248 iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 248 INKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999875 689999999999999999999999999999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=8.4e-77 Score=641.77 Aligned_cols=334 Identities=43% Similarity=0.660 Sum_probs=292.1
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|+|+||+||+...+.. .+.+++.+..+++..|......+ . ......
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~---------------------------~-~~~~~~ 47 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGV---------------------------V-NNQQED 47 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEeccccccccc---------------------------c-cCCcCc
Confidence 58999999999985432 46677778888887764211100 0 012246
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~ 176 (705)
+.|.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|........|||||++.+||..++...
T Consensus 48 ~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~ 126 (334)
T cd01375 48 FSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA 126 (334)
T ss_pred eEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc
Confidence 78999999999 99999999999999999999999999999999999999999987655567999999999999998764
Q ss_pred CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhcc
Q psy11229 177 ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKN 256 (705)
Q Consensus 177 ~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~ 256 (705)
+..|.|++||+|||||+|+|||++.... ......+.+++++.++++|.|++++.|.+++|++.++..|..+
T Consensus 127 -~~~~~v~~S~~Eiy~e~v~DLL~~~~~~--------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~ 197 (334)
T cd01375 127 -TKTYTVHVSYLEIYNEQLYDLLGDTPEA--------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETN 197 (334)
T ss_pred -CcceEEEEEEEEEECCEeecCCCCCccc--------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhh
Confidence 6689999999999999999999877432 0112336779999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHH
Q psy11229 257 RSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASK 336 (705)
Q Consensus 257 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~ 336 (705)
|.+++|.+|..|||||+||+|+|.+.....+. ..+..|+|+|||||||||..++++.+.+++|+..
T Consensus 198 R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~--------------~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~ 263 (334)
T cd01375 198 RTIAETSMNQASSRSHCIFTIHLESRSREAGS--------------EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKY 263 (334)
T ss_pred cccccCcCcCCcCcCeEEEEEEEEEEecCCCC--------------CceEEEEEEEEECCCCCccccccCchhhhhhhhh
Confidence 99999999999999999999999986432221 4567899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 337 INLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 337 IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||||+..+++|||+||+||+|++
T Consensus 264 iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 264 INKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999998776899999999999999999999999999999999999999999999999984
No 20
>KOG0247|consensus
Probab=100.00 E-value=2.6e-75 Score=643.17 Aligned_cols=357 Identities=34% Similarity=0.533 Sum_probs=297.1
Q ss_pred hhcccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccC
Q psy11229 8 EVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKN 87 (705)
Q Consensus 8 ~~~~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (705)
+.+.....+.|.||||+||+...-.+. +++.|.|..+.....|...... ++
T Consensus 23 ~~~S~~~~d~v~v~~rvrP~~~~~~~~------------g~l~v~n~~tivL~~P~d~~~~-----------------~~ 73 (809)
T KOG0247|consen 23 KGASCESKDPVLVVCRVRPLSDASEDE------------GCLRVINEETIVLETPEDSFAR-----------------RS 73 (809)
T ss_pred cccchhhhcchheeEeecCCCCCcccc------------ceEEEeccceeEeeCcHHHHhh-----------------hc
Confidence 444556679999999999998632222 2333333333222222111100 00
Q ss_pred CCCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229 88 PAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH 167 (705)
Q Consensus 88 ~~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~ 167 (705)
-++....+.|.|.+||+|+++|.+||+.++.|+|.+++.|.|+.+|+||.|||||||||+|+...+ ||+||+++-
T Consensus 74 --~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~---GIlPR~Ld~ 148 (809)
T KOG0247|consen 74 --VNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRP---GILPRALDV 148 (809)
T ss_pred --cCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCC---CchHHHHHH
Confidence 112345789999999999999999999999999999999999999999999999999999987766 999999999
Q ss_pred HHHhhhh----------------------------------------------------------------cCCCceEEE
Q psy11229 168 IFGHIAK----------------------------------------------------------------ADESVKFLV 183 (705)
Q Consensus 168 lF~~i~~----------------------------------------------------------------~~~~~~~~V 183 (705)
||+.|.. .+.+..|.|
T Consensus 149 iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV 228 (809)
T KOG0247|consen 149 IFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSV 228 (809)
T ss_pred HHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEE
Confidence 9988742 013567999
Q ss_pred EEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCcccccc
Q psy11229 184 RVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATA 263 (705)
Q Consensus 184 ~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~ 263 (705)
+|||+|||||.|||||.+.+.....- ....+++|.++.+||+|+++|.|.|.+|++++|..|.++|++++|.
T Consensus 229 ~VSf~EIYN~~iYDLLe~~s~q~~~~--------~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~ 300 (809)
T KOG0247|consen 229 FVSFVEIYNNYIYDLLEDASFQGKLQ--------KLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTK 300 (809)
T ss_pred EeeHHHHHHHHHHHhhccccccchhh--------hhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhhee
Confidence 99999999999999998765432111 0234589999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHHH
Q psy11229 264 MNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLST 343 (705)
Q Consensus 264 ~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~a 343 (705)
+|..|||||+||+|.|-+.....+ ...+++|.|.|||||||||..+|+.+|.||+||++||.||++
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~~~--------------s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmT 366 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRSQD--------------SNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMT 366 (809)
T ss_pred ccccccccceeEEEEeeecccccc--------------cCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHH
Confidence 999999999999999977653311 256889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC----CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCc
Q psy11229 344 LGNVISALVDG----KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDP 419 (705)
Q Consensus 344 L~~vI~aL~~~----~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~ 419 (705)
||.||.+|... ...+|||||||||++++.+|.|.++.+||.||+|.+.+|+|+|+.|+||..+..|.+...++..+
T Consensus 367 Lg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 367 LRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred HHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 99999999763 23689999999999999999999999999999999999999999999999999998888776554
Q ss_pred c
Q psy11229 420 K 420 (705)
Q Consensus 420 ~ 420 (705)
.
T Consensus 447 ~ 447 (809)
T KOG0247|consen 447 P 447 (809)
T ss_pred C
Confidence 3
No 21
>KOG0239|consensus
Probab=100.00 E-value=1.1e-76 Score=679.23 Aligned_cols=333 Identities=44% Similarity=0.667 Sum_probs=292.2
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
.+||||||||||+.+.|.......++..+.. +.+.+..|. .....
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~ 357 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPD----------------------------------KGDKL 357 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCc-ceeEeecCC----------------------------------CCCCC
Confidence 5999999999999999876533333332222 345555442 22122
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
.++.|.||+||+|.++|++||.++ .|+|.++|+|||+||||||||||||||||.|+ .|+..|||||++.+||..+..
T Consensus 358 ~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~ 434 (670)
T KOG0239|consen 358 EPQSFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITS 434 (670)
T ss_pred ccccceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHh
Confidence 234799999999999999999886 89999999999999999999999999999995 344569999999999999998
Q ss_pred cCCCceEEEEEEEEEEEcCeeeeccCCCc-cccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 175 ADESVKFLVRVSYFEIYNEEIRDLLSKNK-DQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~-~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
...+|.|.+.+||+|||||.|+|||++.. .. .+.|+.+++++.+|.+++.+.|.+.+++..+|..|
T Consensus 435 ~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~-------------k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g 501 (670)
T KOG0239|consen 435 LKSGWKYDKTVSMLEIYNEAIRDLLSDESYVG-------------KLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIG 501 (670)
T ss_pred hccCceEEeeeehhHHHHHHHHHhcccccccc-------------ceeEEEcCCCceecccceEEecCCHHHHHHHHHHh
Confidence 88899999999999999999999998874 22 24568999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
..+|++++|.+|.+|||||+||+|+|....... +....|.|+|||||||||.++++++|+|++|
T Consensus 502 ~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t----------------~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE 565 (670)
T KOG0239|consen 502 LSNRSVASTASNERSSRSHLVFRVRIRGINELT----------------GIRVTGVLNLVDLAGSERVSKSGVTGERLKE 565 (670)
T ss_pred hccccccccccchhhhccceEEEEEEeccccCc----------------ccccccceeEeecccCcccCcCCCchhhhHH
Confidence 999999999999999999999999997664322 4456789999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~ 413 (705)
+.+||+||++||+||.||+.. ..||||||||||+||||||||++||+|+++|||...++.||+++|+||.|++.+...+
T Consensus 566 ~Q~INkSLS~LgdVi~AL~~k-~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~ 644 (670)
T KOG0239|consen 566 AQNINKSLSALGDVISALASK-RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGS 644 (670)
T ss_pred HHHhchhhhhhHHHHHHHhhc-CCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccc
Confidence 999999999999999999984 5899999999999999999999999999999999999999999999999999987666
Q ss_pred cc
Q psy11229 414 RV 415 (705)
Q Consensus 414 ~~ 415 (705)
..
T Consensus 645 a~ 646 (670)
T KOG0239|consen 645 AR 646 (670)
T ss_pred cc
Confidence 54
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.8e-74 Score=623.27 Aligned_cols=326 Identities=46% Similarity=0.717 Sum_probs=289.7
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCC-CEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLN-GIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~-~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
.++|+|+||+||+...|. .....++.+...+ ..|.+.++ .
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------------------------------------~ 41 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------------------------------------T 41 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------------------------------------C
Confidence 378999999999999986 3344555555443 44444322 1
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
...+.|.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+|....+ |||||++++||..+.
T Consensus 42 ~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~---Gli~r~~~~lf~~~~ 117 (329)
T cd01366 42 GKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENP---GIIPRALEQLFNTAE 117 (329)
T ss_pred CCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCC---CcHHHHHHHHHHHHH
Confidence 235789999999999999999998 5899999999999999999999999999999987655 999999999999998
Q ss_pred hcCC-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 174 KADE-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 174 ~~~~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
...+ +..|.|.+||+|||||+|+|||++... ....+.+++++.++++|.|++++.|.|++|+..++..
T Consensus 118 ~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-----------~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~ 186 (329)
T cd01366 118 ELKEKGWSYTITASMLEIYNETIRDLLATKPA-----------PKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNL 186 (329)
T ss_pred hhhccCceEEEEEEEEEEECCEeEECCCCCcC-----------CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHH
Confidence 7654 688999999999999999999987631 1122566999999999999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|.+++|.+|..|||||+||+|+|.+..... +....|+|+||||||||+..++++.+.+++
T Consensus 187 ~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~----------------~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~ 250 (329)
T cd01366 187 GSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT----------------GEQTRGKLNLVDLAGSERLKKSGATGDRLK 250 (329)
T ss_pred HHhhcccccccccCCCCCccEEEEEEEEEEcCCC----------------CcEEEEEEEEEECCCCcccccccccchhhH
Confidence 9999999999999999999999999998765332 346789999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n 411 (705)
|+..||+||++|++||.+|+.+. .|||||+||||+||+|+||||++|+||+||||...+++||++||+||+|+++|++
T Consensus 251 e~~~in~Sl~~L~~vl~~l~~~~-~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 251 EAQAINKSLSALGDVISALRSKD-SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred hHhhhhhHHHHHHHHHHHHhcCC-CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999874 8999999999999999999999999999999999999999999999999999976
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.5e-73 Score=617.73 Aligned_cols=333 Identities=55% Similarity=0.833 Sum_probs=301.0
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCC-EEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNG-IITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~-~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
+|+|+|||||+...|...+...++.+...++ .|.+.+++ ....
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------------------------------------~~~~ 44 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------------------------------------NRKE 44 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------------------------------------CCCC
Confidence 6999999999999998888888888865543 56655441 1234
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+...+ ||||+++++||..+...
T Consensus 45 ~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~ 121 (335)
T smart00129 45 EKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSP---GIIPRALKDLFEKIDKL 121 (335)
T ss_pred CeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCC---CHHHHHHHHHHHHhhhc
Confidence 688999999999999999999999999999999999999999999999999999986654 99999999999999877
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
.+...|.|+|||+|||+|.|+|||++... .+.+++++.+++++.|++++.|.|++|+..++..|..
T Consensus 122 ~~~~~~~v~~S~~ei~~e~v~DLL~~~~~--------------~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~ 187 (335)
T smart00129 122 EEGWQFQVKVSYLEIYNEKIRDLLNPSPK--------------KLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNK 187 (335)
T ss_pred ccCceEEEEEEEEEEECCEEEECcCCCCC--------------CcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence 66789999999999999999999987532 2456899999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~ 335 (705)
+|.+++|.+|..|||||+||+|+|.+....... .....|+|+|||||||||..+.++.|.+++|+.
T Consensus 188 ~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~--------------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~ 253 (335)
T smart00129 188 NRTVAATKMNEESSRSHAVFTITVESKIKNSSS--------------GSGKASKLNLVDLAGSERASKTGAEGDRLKEAG 253 (335)
T ss_pred ccccccCCCCCCCCcceEEEEEEEEEEecCCCC--------------CCEEEEEEEEEECCCCCccccccChhHHHHhhc
Confidence 999999999999999999999999976322111 456789999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229 336 KINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~ 414 (705)
.||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||||...+|+||++||+||+++++|+|+|+
T Consensus 254 ~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 254 NINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999985 567999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy11229 415 VN 416 (705)
Q Consensus 415 ~n 416 (705)
+|
T Consensus 334 ~~ 335 (335)
T smart00129 334 VN 335 (335)
T ss_pred cC
Confidence 75
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.9e-71 Score=599.67 Aligned_cols=326 Identities=54% Similarity=0.808 Sum_probs=290.5
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|+|+||+||+...| ..+...++.++.. +.|.+.+|.. .....+
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~----------------------------------~~~~~~ 44 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKD----------------------------------GRKAGP 44 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCcc----------------------------------ccCcCc
Confidence 699999999999887 3455677777654 5677776621 112346
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcC
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~ 176 (705)
+.|.||+||+++++|++||+.++.|+|++++.|+|+||||||+|||||||||+|....+ ||||+++++||..+....
T Consensus 45 ~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~~ 121 (328)
T cd00106 45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDP---GIIPRALEDLFNLIDERK 121 (328)
T ss_pred eEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999987655 999999999999998764
Q ss_pred C-CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 177 E-SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 177 ~-~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
. ...|.|++||+|||+|+|+|||++... ...+.+++++.++++|.|++++.|.|++|+..++..|.+
T Consensus 122 ~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~ 189 (328)
T cd00106 122 EKNKSFSVSVSYLEIYNEKVYDLLSPEPP------------SKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLK 189 (328)
T ss_pred ccCceEEEEEEEEEEECCEeEECCCCCCC------------CCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHh
Confidence 3 578999999999999999999988621 112566999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~ 335 (705)
+|.+++|.+|..|||||+||+|+|.+....... .....|+|+||||||||+..+++..+.+++|+.
T Consensus 190 ~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--------------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~ 255 (328)
T cd00106 190 NRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--------------RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAK 255 (328)
T ss_pred hcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC--------------ccEEEEEEEEEECCCCCcccccCCchhhhHhHH
Confidence 999999999999999999999999987643221 136789999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 336 KINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
.||+||++|++||.+|+.+. ..|||||+||||+||+|+|||+++|+||+||+|...+++||++||+||+|||
T Consensus 256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999876 5899999999999999999999999999999999999999999999999985
No 25
>KOG0244|consensus
Probab=100.00 E-value=2.5e-73 Score=645.04 Aligned_cols=348 Identities=41% Similarity=0.629 Sum_probs=313.7
Q ss_pred cCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCCeeEeece
Q psy11229 24 VRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDT 103 (705)
Q Consensus 24 vRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~FD~ 103 (705)
|||+...|...|+..|+.+.+...+|.+.. ..+|+||+
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~------------------------------------------~~s~t~d~ 38 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK------------------------------------------DASFTYDK 38 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC------------------------------------------Ccceeeee
Confidence 799999999999999998877777666642 36799999
Q ss_pred eeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCC-CCchHHHHHHHHHhhhhcCCCceEE
Q psy11229 104 VFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPEL-KGIIPNSFAHIFGHIAKADESVKFL 182 (705)
Q Consensus 104 Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~-~GIipr~~~~lF~~i~~~~~~~~~~ 182 (705)
||+..+.|.++|+.++.|+++.++.|||+|++|||||||||||||.+....... .|+|||++.+||..+..... ..|.
T Consensus 39 v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~ 117 (913)
T KOG0244|consen 39 VFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFR 117 (913)
T ss_pred eccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-ccee
Confidence 999999999999999999999999999999999999999999999887433333 49999999999999998763 7899
Q ss_pred EEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCccccc
Q psy11229 183 VRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGAT 262 (705)
Q Consensus 183 V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T 262 (705)
|.|||+|||++.|+|||.|..... .+.+++ +.+++.+.|+++..|.+..++...|..|.-.|++++|
T Consensus 118 i~vs~vely~e~v~dl~~~~~~~~------------~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasT 184 (913)
T KOG0244|consen 118 ITVSFVELYNEEVLDLLKPSRLKA------------NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVAST 184 (913)
T ss_pred eeeeeeeccchhhhhhcChhhhhh------------ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999999999999999998543221 134466 7788999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHH
Q psy11229 263 AMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLS 342 (705)
Q Consensus 263 ~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~ 342 (705)
+||..|||||+||+|.+++...... .....+||+|||||||||.++|+++|+|++||.+||.+|+
T Consensus 185 nMN~qssRshAifti~lkq~kk~~~---------------~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL 249 (913)
T KOG0244|consen 185 NMNAQSSRSHAIFTITLKQRKKLSK---------------RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLL 249 (913)
T ss_pred hcchhhhhhhHHHHHHHHHHHHhhc---------------cchhhhhhheeeccccccccccccchhhhhhccCcchHHH
Confidence 9999999999999999877543221 2345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCcch
Q psy11229 343 TLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKD 421 (705)
Q Consensus 343 aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~~~ 421 (705)
+|||||+||.+.+ ..|||||||||||||||+||||+.|+||+||||++.|..||++||+||.||++|+|+|.+|.||..
T Consensus 250 ~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~ 329 (913)
T KOG0244|consen 250 ALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKS 329 (913)
T ss_pred HHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHH
Confidence 9999999998754 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy11229 422 ALLIKYQKEISELKKKLEEAS 442 (705)
Q Consensus 422 ~~l~~~~~ei~~Lk~~l~~~~ 442 (705)
..+..++.+|+.|+..|....
T Consensus 330 ~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 330 FEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987654
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.8e-72 Score=606.69 Aligned_cols=330 Identities=48% Similarity=0.759 Sum_probs=281.5
Q ss_pred EcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCCeeEeec
Q psy11229 23 RVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFD 102 (705)
Q Consensus 23 RvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~FD 102 (705)
||||++..|...+...++.+............ ..........|.||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~f~FD 46 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSV----------------------------------NSNNSQKEKSFRFD 46 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEET----------------------------------TEEETTEEEEEEES
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccc----------------------------------cccCCCCceEEEcC
Confidence 99999999999988887776531111111100 00112346899999
Q ss_pred eeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcCCC--ce
Q psy11229 103 TVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADES--VK 180 (705)
Q Consensus 103 ~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~~~--~~ 180 (705)
+||+++++|++||+.++.|+|+++++|||+||||||+|||||||||+|. ..+...|||||++++||..+...... ..
T Consensus 47 ~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~ 125 (335)
T PF00225_consen 47 RVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYE 125 (335)
T ss_dssp EEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEE
T ss_pred eEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccc-ccccccchhhhHHHHHhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999998 22334599999999999999887654 78
Q ss_pred EEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCc-EEEccceEEEcCCHHHHHHHHHhhhccCcc
Q psy11229 181 FLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIG-VYVKDLSAYIANNADDMEKIMSLGNKNRSV 259 (705)
Q Consensus 181 ~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~g-v~v~~l~~~~v~s~~e~~~ll~~g~~~R~~ 259 (705)
|.|+|||+|||||.|+|||++.... ....+.+++++..| ++|.|++++.|.+++++..+|..|.++|.+
T Consensus 126 ~~v~vS~~EIy~e~v~DLL~~~~~~----------~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~ 195 (335)
T PF00225_consen 126 FSVSVSYLEIYNEKVYDLLSPNNSK----------SRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRT 195 (335)
T ss_dssp EEEEEEEEEEETTEEEETTSTTSSS----------TTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTC
T ss_pred ccccccchhhhhhhhhhhcCccccc----------cccccceeeccccccceeeccccccccccccccccccchhhcccc
Confidence 9999999999999999999987411 11135679999977 999999999999999999999999999999
Q ss_pred ccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC-ccccHHHHHHhh
Q psy11229 260 GATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA-SGQRLKEASKIN 338 (705)
Q Consensus 260 ~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~-~g~rlkE~~~IN 338 (705)
+.|.+|..|||||+||+|.|.+.....+.. ......|+|+||||||||+..+.++ .+.+++|+..||
T Consensus 196 ~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~------------~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in 263 (335)
T PF00225_consen 196 ASTKMNARSSRSHAIFTIHVEQKDRDPSDD------------EESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNIN 263 (335)
T ss_dssp TSSSCTHHGGGSEEEEEEEEEEEETTTTTE------------EEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc------------ccceeecceeeeecccccccccccccccccccccceec
Confidence 999999999999999999999876433220 0125789999999999999999886 488899999999
Q ss_pred hhHHHHHHHHHHHhcC-CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 339 LSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 339 ~SL~aL~~vI~aL~~~-~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
+||++|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||||...+|+||++||+||+++|+|
T Consensus 264 ~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 264 KSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred chhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999987 4589999999999999999999999999999999999999999999999999987
No 27
>KOG0246|consensus
Probab=100.00 E-value=2.1e-70 Score=589.23 Aligned_cols=334 Identities=38% Similarity=0.552 Sum_probs=289.9
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
-..|.|+||-||++.+|......+++.|. ..+++.|+.|. ..+|+.. .-
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvp-s~~~l~vHEpk------------------~kVDLtk------------Yl 255 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVP-SKNVLVVHEPK------------------LKVDLTK------------YL 255 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEecc-ccceEEeeccc------------------cccchHH------------HH
Confidence 46799999999999999999999999885 45677777662 1122211 12
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHHHh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFGH 171 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF~~ 171 (705)
..+.|.||++||+.++++.||..+++|||..+|+|--+|+||||||||||||||.|.-. .....||.-++..++|..
T Consensus 256 En~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~ 335 (676)
T KOG0246|consen 256 ENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRL 335 (676)
T ss_pred hhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHH
Confidence 35789999999999999999999999999999999999999999999999999988532 223469999999999998
Q ss_pred hhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHH
Q psy11229 172 IAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM 250 (705)
Q Consensus 172 i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll 250 (705)
+.... ....+.|++||||||+.+|||||+...+ |.+.||....|.|.||.+..|.+.+|+++++
T Consensus 336 L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~K---------------LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lI 400 (676)
T KOG0246|consen 336 LRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKK---------------LRVLEDGNQQVQVVGLQEEEVSGVEEVLELI 400 (676)
T ss_pred hcccchhhcceEEEEEEEEEeCcchhhhhccccc---------------eEEeecCCceEEEeeceeeeccCHHHHHHHH
Confidence 87632 2467899999999999999999987432 4459999999999999999999999999999
Q ss_pred HhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Cccc
Q psy11229 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQ 329 (705)
Q Consensus 251 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g~ 329 (705)
..|+..|+.|.|..|..|||||+||+|.+.... .....|+++||||||+||.+.|. +..+
T Consensus 401 e~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------------------~~k~hGKfSlIDLAGnERGaDts~adRq 461 (676)
T KOG0246|consen 401 EKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------------------EFKLHGKFSLIDLAGNERGADTSSADRQ 461 (676)
T ss_pred HhcccccccCcccCcccccccceeEeeeeecCC-------------------cceeEeEEEEEEccCCccCCcccccchh
Confidence 999999999999999999999999999986432 23457999999999999998776 4556
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCC-CcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229 330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGG-NSKTVMCATVGPASYNYEETISTLRYASRVKK 408 (705)
Q Consensus 330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgG-nskt~mI~~isP~~~~~~ETlsTLrfa~rak~ 408 (705)
...||+.||+||+||..||.||...+ .|+|||.||||.+|+|||-| |++|+||+||||...+.+.||+|||||+|+|.
T Consensus 462 tRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKe 540 (676)
T KOG0246|consen 462 TRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKE 540 (676)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHh
Confidence 77899999999999999999997765 89999999999999999988 99999999999999999999999999999999
Q ss_pred cccccc
Q psy11229 409 ICNKAR 414 (705)
Q Consensus 409 I~n~~~ 414 (705)
......
T Consensus 541 Lsv~~~ 546 (676)
T KOG0246|consen 541 LSVDGG 546 (676)
T ss_pred hcCCCC
Confidence 765444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-62 Score=555.42 Aligned_cols=289 Identities=49% Similarity=0.787 Sum_probs=269.6
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
..+|.||+||++.++|++||+.++.|++++++.|||+||||||||||||||||.|....+ ||||+++.+||+.+...
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~---Gii~~~l~~lf~~l~~~ 131 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP---GIIPLSLKELFSKLEDL 131 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcccc---chHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999987555 99999999999999988
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhc
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~ 255 (705)
..+..|.|.|||+|||||+++|||.+.... +.++++...+|+|.|++.+.+.+.+|++.+|..|..
T Consensus 132 ~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--------------~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~ 197 (568)
T COG5059 132 SMTKDFAVSISYLEIYNEKIYDLLSPNEES--------------LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEK 197 (568)
T ss_pred ccCcceeeEeehhHHHhhHHHhhccCcccc--------------ccccccCCCceEeecceEEecCChHHHHHHHHHhhh
Confidence 767889999999999999999999876542 334788999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHH
Q psy11229 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEAS 335 (705)
Q Consensus 256 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~ 335 (705)
+|.++.|.+|..|||||+||++++.......+. ...++|+||||||||+...++..+.|++|+.
T Consensus 198 nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~----------------~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~ 261 (568)
T COG5059 198 NRTTASTEINDESSRSHSIFQIELASKNKVSGT----------------SETSKLSLVDLAGSERAARTGNRGTRLKEGA 261 (568)
T ss_pred hcccccchhccccccceEEEEEEEEEeccCccc----------------eecceEEEEeeccccccchhhcccchhhhhh
Confidence 999999999999999999999999887644332 2237899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhc-CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229 336 KINLSLSTLGNVISALVD-GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~-~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~ 414 (705)
.||+||.+||+||.+|.+ ++..|||||+||||||||++|||+++|+|||||+|...+++||++||+||+||+.|+|++.
T Consensus 262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~ 341 (568)
T COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ 341 (568)
T ss_pred hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence 999999999999999987 4458999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy11229 415 VNQ 417 (705)
Q Consensus 415 ~n~ 417 (705)
.|.
T Consensus 342 ~~~ 344 (568)
T COG5059 342 VNS 344 (568)
T ss_pred ccC
Confidence 996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.7e-50 Score=400.66 Aligned_cols=179 Identities=53% Similarity=0.843 Sum_probs=164.5
Q ss_pred HHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcCCCceEEEEEEEEEEEcC
Q psy11229 114 IYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNE 193 (705)
Q Consensus 114 Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~~~~~~~V~vS~~EIynE 193 (705)
||+.++ |+|+.+++|||+||||||||||||||||+|.... .||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~---~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG---AGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC---CCcchHHHHH--------------------------
Confidence 999999 9999999999999999999999999999998644 5999999887
Q ss_pred eeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhhccCccccccCCCCCCCcee
Q psy11229 194 EIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHA 273 (705)
Q Consensus 194 ~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 273 (705)
+..++..|..+|.++.|.+|..|||||+
T Consensus 58 ----------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~ 85 (186)
T cd01363 58 ----------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHS 85 (186)
T ss_pred ----------------------------------------------------HHHHHhhccccccccccCCCCccCcccE
Confidence 6788999999999999999999999999
Q ss_pred EEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHHHHhhhhHHHHHHHHHHHhc
Q psy11229 274 IFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD 353 (705)
Q Consensus 274 If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~ 353 (705)
||+|+|.......+. ......|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|++
T Consensus 86 i~~i~v~~~~~~~~~-------------~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~ 152 (186)
T cd01363 86 VFRIHFGGKNALASA-------------TEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE 152 (186)
T ss_pred EEEEEEEEeecCCCC-------------ccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999876532211 1345689999999999999999999999999999999999999999999998
Q ss_pred CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCC
Q psy11229 354 GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGP 388 (705)
Q Consensus 354 ~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP 388 (705)
+. .||||||||||+||||+|||||+|+||+||||
T Consensus 153 ~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 153 RD-SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred CC-CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 65 79999999999999999999999999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.88 E-value=4.5e-08 Score=113.18 Aligned_cols=214 Identities=27% Similarity=0.316 Sum_probs=133.1
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
...|.||.+|.....+..++... .-+++..++| +++||++++|+++||.-. ..++.+-.+..+|..+...
T Consensus 352 ~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 421 (568)
T COG5059 352 IEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR-----IDLIMKSIISGTFERKKLL 421 (568)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch-----hhhhhhhhhhhhhhhhhhh
Confidence 45699999999999998888764 5677777888 999999999999999532 2366666667778766543
Q ss_pred C-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229 176 D-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254 (705)
Q Consensus 176 ~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~ 254 (705)
. ..+.+...+-++++|-....+++............ ....++.+ ...+.........+..... ...
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~ 488 (568)
T COG5059 422 KEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIH------KLNKLRHD------LSSLLSSIPEETSDRVESE-KAS 488 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH------HHHHHHHH------HHHhhhhcchhhhhhhhhh-hhc
Confidence 2 13334444445555522222222211111000000 00000000 0000000011111111111 567
Q ss_pred ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA 334 (705)
Q Consensus 255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~ 334 (705)
..+..+.+.+|..++++|++|+.......... .... +++|||||+||. -....|.++++.
T Consensus 489 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~----------------~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~ 548 (568)
T COG5059 489 KLRSSASTKLNLRSSRSHSKFRDHLNGSNSST----------------KELS---LNQVDLAGSERK-VSQSVGELLRET 548 (568)
T ss_pred cchhhcccchhhhhcccchhhhhcccchhhhh----------------HHHH---hhhhhccccccc-hhhhhHHHHHhh
Confidence 88899999999999999999987653322110 0111 799999999999 888999999999
Q ss_pred HHhhhhHHHHHHHHHHHh
Q psy11229 335 SKINLSLSTLGNVISALV 352 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~ 352 (705)
.++|++|..++.+|.++.
T Consensus 549 ~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 549 QSLNKSLSSLGDVIHALG 566 (568)
T ss_pred Hhhhhccccchhhhhhcc
Confidence 999999999999998764
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.60 E-value=0.47 Score=49.01 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcccccccCceeecccccCCCcc
Q psy11229 606 YSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNNM 650 (705)
Q Consensus 606 l~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~~~~~~~~~~ 650 (705)
+.-+..-+-.=+||+-+...+....|....+-=.|..-+=.|=+|
T Consensus 161 ~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m 205 (239)
T COG1579 161 LSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHM 205 (239)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccCCee
Confidence 333444455557888888888888887777766666555555444
No 32
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.57 E-value=0.37 Score=45.76 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
...++.+.+.....+..++..|++.+...+.+ ......+.+..++....|+.++.....++..++..+.
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~-----------~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQEN-----------KECLILDAENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888999999898866433222 1112222333333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKK 569 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~ 569 (705)
++..|.+.+.+.+.+
T Consensus 77 ~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 77 TLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.28 E-value=0.25 Score=58.85 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy11229 422 ALLIKYQKEISELKKKLEEAS 442 (705)
Q Consensus 422 ~~l~~~~~ei~~Lk~~l~~~~ 442 (705)
..+.+|..+|++||.+|....
T Consensus 418 ~a~~rLE~dvkkLraeLq~~R 438 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSR 438 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455688999999999886643
No 34
>KOG1029|consensus
Probab=96.22 E-value=0.2 Score=58.24 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD---VQRENRKEIEGFLDNVRQITKEYSYQ 609 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d---~~~e~~~e~e~~~~~~~~~~~el~l~ 609 (705)
.+|..+.....+.+.-+..+...|+.|.+.|..++..+..++++..-.+.. ..++....++-...++.+|..+|+-+
T Consensus 419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555666777777777777777777666666554332221 12222333333444444444444433
Q ss_pred HHHHHhcCC
Q psy11229 610 QAIIQKFIP 618 (705)
Q Consensus 610 ~~ii~~fiP 618 (705)
+.-+-..+|
T Consensus 499 q~kl~~l~~ 507 (1118)
T KOG1029|consen 499 QEKLQKLAP 507 (1118)
T ss_pred HHHHHhhhh
Confidence 333333333
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.13 E-value=0.29 Score=58.33 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11229 474 ETDAELKRAQSDHQSMVEKLELLQKK 499 (705)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~k~~~l~~~ 499 (705)
+.+.++++++.+++.....-++|..+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45556666666655444444444443
No 36
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.0099 Score=66.76 Aligned_cols=94 Identities=26% Similarity=0.397 Sum_probs=60.9
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC---CCCCCCCchH--HHHHHHHHh
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN---NVPELKGIIP--NSFAHIFGH 171 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~~~~GIip--r~~~~lF~~ 171 (705)
..|....-|.|.-.|-. ....||+.+-.|.-.-+ -.|.|||||||||-..- .-|.. =|.| -...+||+.
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtL-V~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTL-VLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeE-EEecchhHHHHHHHH
Confidence 35777778888888854 44667777777765543 47999999999996421 11100 0011 124567776
Q ss_pred hhhcCCCceEEEEEEEEEEEcCeee
Q psy11229 172 IAKADESVKFLVRVSYFEIYNEEIR 196 (705)
Q Consensus 172 i~~~~~~~~~~V~vS~~EIynE~v~ 196 (705)
....-++.....+|||+.-|.-+.|
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcccc
Confidence 6665556667788999999986643
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.74 E-value=0.73 Score=53.69 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD 597 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~ 597 (705)
+.....++.+.+....+.+..+.....+...++..+.+|+.+......+|+.+..+|..+..++.++..+... .+
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~-----~~ 406 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH-----RG 406 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3444555555555556666666666666667777777777777777777888888888888777777554322 22
Q ss_pred HHHHHHHHHHHHHHHHHhcCCh
Q psy11229 598 NVRQITKEYSYQQAIIQKFIPT 619 (705)
Q Consensus 598 ~~~~~~~el~l~~~ii~~fiP~ 619 (705)
.++.+-+.......+++.|+|.
T Consensus 407 ~i~~~~~~~g~~~~i~~~~l~~ 428 (562)
T PHA02562 407 IVTDLLKDSGIKASIIKKYIPY 428 (562)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444434456667788888875
No 38
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=95.40 E-value=2.9 Score=46.52 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy11229 491 EKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK- 569 (705)
Q Consensus 491 ~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~- 569 (705)
.+-.+++++.+.-.+.+.-..+..+.+.+..+.+|+.-++--++|...|+..-.--..+-+.|..||+.-..+-.+.++
T Consensus 284 ~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i 363 (488)
T PF06548_consen 284 QRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRI 363 (488)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554445555566666777777788888777777888877765444444555555555544333333221
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 570 -------------------VSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS 607 (705)
Q Consensus 570 -------------------~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~ 607 (705)
-..++.++-.|+..+.-+..+|++-|.+..+.|.-+|+
T Consensus 364 ~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLr 420 (488)
T PF06548_consen 364 MEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLR 420 (488)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 24467788888888889999999999988888887764
No 39
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.19 E-value=2.8 Score=39.41 Aligned_cols=100 Identities=14% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 510 KAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589 (705)
Q Consensus 510 ~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~ 589 (705)
....+......+...++....+..+.-..|....++...+...+..++. ........+...+...........
T Consensus 32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~-------~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA-------EAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444445555555555544444444445555444444444444444444 444444445555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 590 KEIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 590 ~e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
.++.++...+.+|..+-+|+.--|+.+
T Consensus 105 ~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777777777777777666654
No 40
>KOG0963|consensus
Probab=95.18 E-value=2.4 Score=48.95 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQ--EESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF 595 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~--~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~ 595 (705)
+.-...+++..+++...++..+..+..+......... +. +.++.+...|...-..+..+-.++..++..+..+++.+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~-~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~ 315 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK-LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH 315 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665555554443332221111 11 33455555666667778888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy11229 596 LDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 596 ~~~~~~~~~el~l~~~ii~~f 616 (705)
-.+|..++++++-+.-+|+..
T Consensus 316 ~~qI~~le~~l~~~~~~leel 336 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEEL 336 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887654
No 41
>KOG0250|consensus
Probab=95.09 E-value=1.3 Score=53.96 Aligned_cols=131 Identities=19% Similarity=0.279 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNI-QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN---RKEIEG 594 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l-~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~---~~e~e~ 594 (705)
++...+++...+....++++. +....+...++.++..|+.|++.++..+..|..+++.++.++.+.+++. +.++.+
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444455555555555 5556666778888888888888888888888888888888887776655 244445
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhcCC--hHHHHHHHhhcccccccCceeecccccCCCccccCCC
Q psy11229 595 FLDNVRQITKEYSYQQAI----IQKFIP--TKYLELMTQNATWNEDIGEWELKCVAYTGNNMRKIVP 655 (705)
Q Consensus 595 ~~~~~~~~~~el~l~~~i----i~~fiP--~~~~~ki~~~~~wdee~~~W~l~~~~~~~~~~~~~~~ 655 (705)
+...|+....+|+-...- +..|=| |.-+.-|..+-.. .+-||+.+-|..+.-..|
T Consensus 448 l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~------f~~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 448 LRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR------FQTPPKGPLGKYVTLKEP 508 (1074)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc------CCCCCCCCccceeEecCc
Confidence 555555555554433222 344443 2334445433221 367777777765544444
No 42
>KOG0995|consensus
Probab=95.07 E-value=7.1 Score=44.82 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK-------KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~-------~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el 606 (705)
+....+.+.+.+...+++.++.+..-++.++..+. ++..+++..+++-.+.......|++.+...+..+.-.+
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555556555555554444444444 44444444444444555555555555554444444443
Q ss_pred HHHHHHHHhc
Q psy11229 607 SYQQAIIQKF 616 (705)
Q Consensus 607 ~l~~~ii~~f 616 (705)
.-.....+.+
T Consensus 509 ~~~m~~a~~~ 518 (581)
T KOG0995|consen 509 NTSMKEAEEL 518 (581)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 43
>PRK11637 AmiB activator; Provisional
Probab=94.94 E-value=0.51 Score=53.33 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
...+++..+.+++.+..++..+++++ ...+..+.....++.........++.++...+.++..+++.+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~-----------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQR-----------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444444443322 1222334444444555455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLK 568 (705)
Q Consensus 555 ~l~~e~~~~~~~l~ 568 (705)
.++.+++.+++.++
T Consensus 114 ~~q~~l~~~~~~l~ 127 (428)
T PRK11637 114 KLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444444
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.92 E-value=5.5 Score=41.32 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=6.7
Q ss_pred HHHHHHHHHhc
Q psy11229 606 YSYQQAIIQKF 616 (705)
Q Consensus 606 l~l~~~ii~~f 616 (705)
+..+..|+.++
T Consensus 177 l~~yeri~~~~ 187 (239)
T COG1579 177 LSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHhcC
Confidence 45566666665
No 45
>KOG4360|consensus
Probab=94.91 E-value=1.8 Score=48.74 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11229 516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVS---SMLLAAKEERKDVQRENRKEI 592 (705)
Q Consensus 516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~---~~l~~~~~e~~d~~~e~~~e~ 592 (705)
...-...+++.....+...+.+.|+.+-.+...+.|..+.|-.++-.+++|++.+. .++.+.-.+.+|-+++...|.
T Consensus 198 ~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 198 QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44446677888888888888888888888888888888888888877777776333 223333344444455555555
Q ss_pred HHHHHHHHHH
Q psy11229 593 EGFLDNVRQI 602 (705)
Q Consensus 593 e~~~~~~~~~ 602 (705)
+++.+...+.
T Consensus 278 ~EleDkyAE~ 287 (596)
T KOG4360|consen 278 EELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 46
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.86 E-value=0.55 Score=50.82 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD 597 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~ 597 (705)
+.....+++..++.+.++.++|++.+.+...+...+..++.+.+.+...-...|..+...+-++.+.++ ++..+..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~----e~~sl~~ 120 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE----ERDSLKN 120 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344556677777777788888888888888888888888888877777666777666666655554433 3444444
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceeecc
Q psy11229 598 NVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKC 642 (705)
Q Consensus 598 ~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~~ 642 (705)
++..... .++++++.-.||+-=.-|.-.+
T Consensus 121 q~~~~~~----------------~L~~L~ktNv~n~~F~I~hdG~ 149 (314)
T PF04111_consen 121 QYEYASN----------------QLDRLRKTNVYNDTFHIWHDGP 149 (314)
T ss_dssp HHHHHHH----------------HHHCHHT--TTTTT--EEEETT
T ss_pred HHHHHHH----------------HHHHHHhcCchhceeeEeecCC
Confidence 4333333 3456666666666666666443
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.68 E-value=10 Score=43.84 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 586 RENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 586 ~e~~~e~e~~~~~~~~~~~e 605 (705)
++.+.|+.+|++-|+.|+..
T Consensus 434 Eql~~EkQeL~~yi~~Le~r 453 (546)
T PF07888_consen 434 EQLQEEKQELLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.67 E-value=4.7 Score=51.47 Aligned_cols=14 Identities=0% Similarity=0.342 Sum_probs=7.6
Q ss_pred EEcCCHHHHHHHHH
Q psy11229 238 YIANNADDMEKIMS 251 (705)
Q Consensus 238 ~~v~s~~e~~~ll~ 251 (705)
+.|.+.+.+..+..
T Consensus 617 ~Iv~~l~~A~~l~~ 630 (1163)
T COG1196 617 LVVDDLEQARRLAR 630 (1163)
T ss_pred EEecCHHHHHHHHH
Confidence 34556666655553
No 49
>PRK09039 hypothetical protein; Validated
Probab=94.65 E-value=2.3 Score=46.67 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV 599 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~ 599 (705)
..+|...+....+...++.....++..+..++..++.+++..+.+.+....++..++.++.....+...+.+.+..++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444444444444555555555555555555555555555555555544444344444444444
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.65 E-value=2 Score=46.85 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQ 627 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~ 627 (705)
.+.+.+..+..+++.+++++..+..++..+..++.++ ..++.+++..|.++++.+.-+ . -.-..++.+++.
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~----~~~k~~l~~eI~e~~~~~~~~----r-~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL----EEQKQELLAEIAEAEKIREEC----R-GWTRSEVKRLKA 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh----c-CCCHHHHHHHHH
Confidence 3444444444555555555555444444444444333 224445555555555443221 1 124567777777
Q ss_pred hcccccccCceeecccc
Q psy11229 628 NATWNEDIGEWELKCVA 644 (705)
Q Consensus 628 ~~~wdee~~~W~l~~~~ 644 (705)
....=+..--|.+-.+.
T Consensus 284 ~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 284 KVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHCcEEEEEe
Confidence 77777777778886654
No 51
>PLN03188 kinesin-12 family protein; Provisional
Probab=94.64 E-value=2.9 Score=52.02 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=73.5
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy11229 497 QKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK------- 569 (705)
Q Consensus 497 ~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~------- 569 (705)
|.+.+.-.+.+--.++....+.++.+.||+.-|+--++|+..|+..-.=-..|-|+|..||+.-..|-.+.++
T Consensus 1060 es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~d 1139 (1320)
T PLN03188 1060 ESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDD 1139 (1320)
T ss_pred hhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344434445566677778888888888888888888876555555566666666654444333322
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 570 -------------VSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS 607 (705)
Q Consensus 570 -------------~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~ 607 (705)
-..++.++-+|+..+.-+.++||+-|.+.-+.|.-+|+
T Consensus 1140 vkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1140 VKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 23467777888888888888899888888877777653
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.58 E-value=6.5 Score=45.77 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.2
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35566999999999654
No 53
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.57 E-value=2.6 Score=53.44 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.7
Q ss_pred EEeccCCCCccccc
Q psy11229 135 FAYGQTGTGKTFTM 148 (705)
Q Consensus 135 faYGqTgSGKT~Tm 148 (705)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44899999999765
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.46 E-value=6.3 Score=39.92 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy11229 421 DALLIKYQKEISELKKKLE 439 (705)
Q Consensus 421 ~~~l~~~~~ei~~Lk~~l~ 439 (705)
-.+|..|+++|..++....
T Consensus 26 L~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877654
No 55
>KOG2129|consensus
Probab=94.35 E-value=10 Score=41.83 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
...|.+.+++.+.+...|+++|.
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888775
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.34 E-value=8.9 Score=41.14 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
....+..+..+...|+.....|...- ..-.+..++++....+++.....+...|...|..+.++....++.+.
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et-------~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTET-------DTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH-------hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443211 11122234566677888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKKVSSMLLAAKEER---KDVQRENRKEIEGFLDNV 599 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~---~d~~~e~~~e~e~~~~~~ 599 (705)
+|..++-.++++++.+..+...+..-+ ++.|.....|..++.+.+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888876554433333222 333444444444444443
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.24 E-value=5.9 Score=45.70 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.5
Q ss_pred EEEEecCC
Q psy11229 310 LHLVDLAG 317 (705)
Q Consensus 310 L~lVDLAG 317 (705)
++-||=.|
T Consensus 92 fcYv~~~g 99 (546)
T PF07888_consen 92 FCYVDQKG 99 (546)
T ss_pred EEEECCCc
Confidence 34444444
No 58
>KOG0996|consensus
Probab=94.22 E-value=3.9 Score=50.43 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.++-++.+|+....+.+.....+.+.......+.+.+...+.++..++..|..+..++.++..++.
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 334444455555444444444444444444444444444444444444444444444444443333
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.20 E-value=0.029 Score=57.44 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=31.1
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.|+||.-+..+. ++..|.. +..+.+.--..+|. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g~~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVGES-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--TTT-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcCCc-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 499998776544 5566643 34455542223455 78899999999998754
No 60
>KOG0933|consensus
Probab=94.17 E-value=3.9 Score=49.60 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~ 573 (705)
|+..+...+.....++..+++|..++..+..++.++...
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 333333333333334444444444444444444333333
No 61
>KOG0933|consensus
Probab=94.05 E-value=4.9 Score=48.82 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKD-------AERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~-------~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
++..+.++..+++..+++.++-...++..+ .|...++..+++++...+.+...+..+..++-.+...+.+.+.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 333444444444444444444333333333 3333444444444444455555555554444444444444322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH
Q psy11229 587 ---ENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 587 ---e~~~e~e~~~~~~~~~~~el 606 (705)
+-+.+..+....++.+..++
T Consensus 865 ~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 865 DVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 22334444444455555554
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.04 E-value=7.3 Score=41.24 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV 599 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~ 599 (705)
....++++.+.+...++..++...++.....+++..+++.++.....+.......+.......+...+....+..+....
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666666666666666666666666553333333333333333333333333333322
Q ss_pred HHHHHHHHHHHHHHHhcCChHHH
Q psy11229 600 RQITKEYSYQQAIIQKFIPTKYL 622 (705)
Q Consensus 600 ~~~~~el~l~~~ii~~fiP~~~~ 622 (705)
..+...-...-..+..+.|-...
T Consensus 140 ~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 140 SQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHhCceee
Confidence 22222222222234456666544
No 63
>KOG0804|consensus
Probab=93.98 E-value=3.1 Score=46.28 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMT 626 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~ 626 (705)
++.++..++.|....+..-+.+...+..-...++.+++.....+..+.+.|.+|+.+|+=.+. -.+-+++|+
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf------~le~qqklk 458 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF------FLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe------ehhhhhhhh
Confidence 333333333333333332233333333334444455555555555555555555555443332 234456665
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=93.97 E-value=0.04 Score=56.79 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=33.0
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
..++||..+..... .- +.-+...+-.++|..++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~~-~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNNL-LL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCChH-HH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 45899999976532 11 22223333457788899999999999998854
No 65
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.90 E-value=3.7 Score=40.84 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q psy11229 485 DHQSMVEKLELLQ 497 (705)
Q Consensus 485 ~~~~l~~k~~~l~ 497 (705)
....+.+++..++
T Consensus 89 ~l~~l~~el~~l~ 101 (191)
T PF04156_consen 89 QLQQLQEELDQLQ 101 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 66
>KOG0250|consensus
Probab=93.83 E-value=5.1 Score=49.17 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 516 QLLDAAAQEL-EHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 516 ~~l~~~~~el-~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
+++.....+. .....+..+++..++....+...+++.+++|.+|.+....+++....+.-.++.++.++
T Consensus 379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333 33444455566666666666666666666666666666666665555555555555444
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=93.82 E-value=12 Score=46.23 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.6
Q ss_pred EEeccCCCCccccc
Q psy11229 135 FAYGQTGTGKTFTM 148 (705)
Q Consensus 135 faYGqTgSGKT~Tm 148 (705)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36899999999764
No 68
>KOG0971|consensus
Probab=93.76 E-value=5.3 Score=47.87 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
-.||+-.+||.|++.++.++..+...+.-+++|+.
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655555555555544
No 69
>KOG0980|consensus
Probab=93.75 E-value=4.8 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=9.7
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q psy11229 418 DPKDALLIKYQKEISELKKKL 438 (705)
Q Consensus 418 ~~~~~~l~~~~~ei~~Lk~~l 438 (705)
|+.+..+..+..+++.++.+|
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l 349 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQL 349 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.73 E-value=2.4 Score=46.12 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.++.+|.....+.......+..++.+.+.++.+++.+..+...+..++.+.
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443
No 71
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.69 E-value=4.9 Score=50.93 Aligned_cols=11 Identities=0% Similarity=0.286 Sum_probs=7.0
Q ss_pred CHHHHHHHHHh
Q psy11229 242 NADDMEKIMSL 252 (705)
Q Consensus 242 s~~e~~~ll~~ 252 (705)
+..++..++..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 46777776653
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.66 E-value=9.1 Score=49.78 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=14.5
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
+++.-+|++|+|||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 355678999999999874
No 73
>KOG0980|consensus
Probab=93.64 E-value=5.1 Score=47.96 Aligned_cols=97 Identities=10% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK-------EIEGF 595 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~-------e~e~~ 595 (705)
.+..+..++.+.-+..+.+.+++...+..++..++.+.+....|.+.....+.+.+.|+.-++.+.+. -.+..
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~ 524 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSH 524 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33334333333333444444445555555555555555443344444444444444444444333222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCh
Q psy11229 596 LDNVRQITKEYSYQQAIIQKFIPT 619 (705)
Q Consensus 596 ~~~~~~~~~el~l~~~ii~~fiP~ 619 (705)
-....++...++-+...+....-.
T Consensus 525 ~~~~~~l~~~l~~KD~~~~~~~~~ 548 (980)
T KOG0980|consen 525 NNQLAQLEDLLKQKDRLAAELVAR 548 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333344455555555555555443
No 74
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.52 E-value=7 Score=46.71 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy11229 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE---ESEGLSKKLKKVSSMLLAAKEERK---DVQ 585 (705)
Q Consensus 512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~---e~~~~~~~l~~~~~~l~~~~~e~~---d~~ 585 (705)
+..+.....++.++.+.|.++..|-+...+.++|.+.|++.++.|.+ |-+++.-.|+++..+...+...+. .+.
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455567788888889999999999999999999999998765 667888888888777666655444 456
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 586 RENRKEIEGFLDNVRQ 601 (705)
Q Consensus 586 ~e~~~e~e~~~~~~~~ 601 (705)
+--++++++.++++..
T Consensus 152 ~iae~qleEALesl~~ 167 (717)
T PF09730_consen 152 EIAEKQLEEALESLKS 167 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788888888753
No 75
>KOG1029|consensus
Probab=93.49 E-value=5.6 Score=46.97 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES---EGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG 594 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~---~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~ 594 (705)
++....++.+.+.++.++++.|...--|...++.++...|.-. ......|++...+-..+...++|...+...|.+.
T Consensus 481 ~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 481 RELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666555566666555444322 1112223333333333444444444444444444
Q ss_pred HHHHH
Q psy11229 595 FLDNV 599 (705)
Q Consensus 595 ~~~~~ 599 (705)
-+..|
T Consensus 561 k~~ei 565 (1118)
T KOG1029|consen 561 KLNEI 565 (1118)
T ss_pred HHHhh
Confidence 44433
No 76
>PRK09039 hypothetical protein; Validated
Probab=93.41 E-value=9.1 Score=42.03 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ 585 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~ 585 (705)
+...+..+|.+......+..-++..|+.+++.++++|..+...|.+++.+..+.+
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444455555555666666666666666666666555554443
No 77
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.39 E-value=6.4 Score=49.81 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=4.7
Q ss_pred CCEEEEeCCCC
Q psy11229 46 NGIITVKNPAG 56 (705)
Q Consensus 46 ~~~v~v~~p~~ 56 (705)
.+.+.|..|.|
T Consensus 23 ~~~~~i~G~NG 33 (1179)
T TIGR02168 23 KGITGIVGPNG 33 (1179)
T ss_pred CCcEEEECCCC
Confidence 33444444443
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=93.19 E-value=20 Score=44.41 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.9
Q ss_pred EEeccCCCCccccc
Q psy11229 135 FAYGQTGTGKTFTM 148 (705)
Q Consensus 135 faYGqTgSGKT~Tm 148 (705)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999998653
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.18 E-value=5.7 Score=38.11 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI 602 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~ 602 (705)
.+++......+.|+.+++..+.+ +...+.....++++++.+...++..++|+..+....+.-+..+...++..
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere-------~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERE-------LASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444 44444444444455555555555555566666555555566666666666
Q ss_pred HHHH
Q psy11229 603 TKEY 606 (705)
Q Consensus 603 ~~el 606 (705)
++|+
T Consensus 139 e~E~ 142 (151)
T PF11559_consen 139 EREI 142 (151)
T ss_pred HHHH
Confidence 6664
No 80
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.18 E-value=14 Score=39.62 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEG----LSKKLKKVSSMLLAAKEERKDVQREN 588 (705)
Q Consensus 513 ~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~----~~~~l~~~~~~l~~~~~e~~d~~~e~ 588 (705)
.....+.....++...+.....|...+.........++..+..++..... ....|..+..++..++.+ ...+
T Consensus 206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~----~~~~ 281 (312)
T PF00038_consen 206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE----MARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH----HHHH
Confidence 33444555566666666666667766666666666666666665544432 222233333333333333 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEYSYQQAIIQ 614 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el~l~~~ii~ 614 (705)
.++.++|++.--.|..|+.-+.-+++
T Consensus 282 ~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 282 LREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44556777777788888877776665
No 81
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.07 E-value=5 Score=41.49 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.+..|.++.++.+..........+.|++..+++..||..+++++.|.+.....+.+++.+|.-++.++..+
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555666666655555555555555555555555555444
No 82
>KOG0996|consensus
Probab=93.02 E-value=4.4 Score=49.94 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=10.2
Q ss_pred eccCCCCccccc
Q psy11229 137 YGQTGTGKTFTM 148 (705)
Q Consensus 137 YGqTgSGKT~Tm 148 (705)
.|+.||||+-.+
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 699999999664
No 83
>KOG0804|consensus
Probab=92.97 E-value=6.3 Score=43.92 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=18.8
Q ss_pred EcCCHHHHHHHHHhhhccCccccccCCCC-CCCceeEEEEEEEee
Q psy11229 239 IANNADDMEKIMSLGNKNRSVGATAMNEV-SSRSHAIFSIIIETS 282 (705)
Q Consensus 239 ~v~s~~e~~~ll~~g~~~R~~~~T~~N~~-SSRSH~If~i~v~~~ 282 (705)
..++.+++..++..-+.. .+|.- +--.|.+|-..|+..
T Consensus 121 kFr~q~da~~Fy~efNGk------~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 121 KFRDQADADTFYEEFNGK------QFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EeccchhHHHHHHHcCCC------cCCCCCccceeEEEEEEEEEE
Confidence 345566666665432221 22221 224688887766544
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.87 E-value=11 Score=39.90 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHHHH
Q psy11229 478 ELKRAQSDHQSMVEKLE 494 (705)
Q Consensus 478 ~~~~~~~~~~~l~~k~~ 494 (705)
++...+.+.+.+..+++
T Consensus 28 ~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 85
>KOG0971|consensus
Probab=92.87 E-value=5.3 Score=47.87 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
.++++..+....+|++.-+...++...+|.++..|++.+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555666666666555
No 86
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.86 E-value=0.056 Score=57.23 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=28.2
Q ss_pred hhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 119 ARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 119 ~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+.|+|..+++--+|.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888999999999999999999999983
No 87
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.85 E-value=5.4 Score=44.57 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 558 EESEGLSKKLKKVSSMLLAAKEERKDVQRE 587 (705)
Q Consensus 558 ~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e 587 (705)
.|.+.+.+.|.++..+...+..++.+...+
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 344444555554444444444444443333
No 88
>KOG0995|consensus
Probab=92.81 E-value=20 Score=41.36 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG 594 (705)
Q Consensus 515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~ 594 (705)
...++..+.|++..++...+|+..++.+.=. -+.+..+..|.+.+++.|.++..++..+.+++-++..+.+...++
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS----~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~ 375 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQGIS----GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKE 375 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344445555666666666666666554211 122233444445555555555555555555555554444444444
Q ss_pred HHHHHHHHH
Q psy11229 595 FLDNVRQIT 603 (705)
Q Consensus 595 ~~~~~~~~~ 603 (705)
++....++.
T Consensus 376 le~~~~~~~ 384 (581)
T KOG0995|consen 376 LEKKFIDLN 384 (581)
T ss_pred HHHHHHHHH
Confidence 444443333
No 89
>KOG0994|consensus
Probab=92.79 E-value=18 Score=44.78 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 479 LKRAQSDHQSMVEKLELLQKKVLVGGEN---LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSS 555 (705)
Q Consensus 479 ~~~~~~~~~~l~~k~~~l~~~~~~~~~~---~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~ 555 (705)
+..+-+.+.+|..++++|..+....... +.+.+..-.......++.++.+.+..+...+.++.+-+......++...
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~ 1693 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQ 1693 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4444455556666666666554433211 1111111112222333444443333333333343333333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 556 LQEESEGLSKKLKKVSSMLLAAKEERKDVQ---RENRKEIEGFLDNVRQITKEYS 607 (705)
Q Consensus 556 l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~---~e~~~e~e~~~~~~~~~~~el~ 607 (705)
|++|.+.|...-.. ....++|++ ...++.++++...+-.|++++.
T Consensus 1694 L~~eA~~Ll~~a~~-------kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQANE-------KLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 55555433322222 222233332 3334455555555555555543
No 90
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.78 E-value=7.3 Score=49.30 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456899999999887
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.76 E-value=18 Score=47.00 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=8.5
Q ss_pred EeCCCCEEEEeCCCCC
Q psy11229 42 VDLLNGIITVKNPAGS 57 (705)
Q Consensus 42 ~~~~~~~v~v~~p~~~ 57 (705)
++...+.+.|..|.|+
T Consensus 24 I~F~~~~~~I~G~NGa 39 (1311)
T TIGR00606 24 IDFFSPLTILVGPNGA 39 (1311)
T ss_pred eecccceEEEECCCCC
Confidence 3344556666666543
No 92
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.62 E-value=9.1 Score=41.45 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLEL 624 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~k 624 (705)
+...+.+++..+..++..+.+++..+..++..+...+.+. ..++.++...|+++++.+.-+ . -.-..|+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~----~~~k~e~~~~I~~ae~~~~~~----r-~~t~~Ei~~ 275 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL----TNKKSELNTEIAEAEKKLEQC----R-GFTFKEIEK 275 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc----C-CCCHHHHHH
Confidence 3444556666666666666666666555555555444433 335566666666666633221 1 233456777
Q ss_pred HHhhcccccccCceeeccc
Q psy11229 625 MTQNATWNEDIGEWELKCV 643 (705)
Q Consensus 625 i~~~~~wdee~~~W~l~~~ 643 (705)
++.....=+..--|.+..+
T Consensus 276 Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 276 LKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHhCCeeEec
Confidence 7776666666666777665
No 93
>KOG0161|consensus
Probab=92.58 E-value=14 Score=48.89 Aligned_cols=66 Identities=26% Similarity=0.352 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
...++++...+...+++...+++.+.+....+.++..|++++..+...+.++...-+.+.+.+.++
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l 997 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIREL 997 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666666666666666666666665555555444444433333333
No 94
>KOG0161|consensus
Probab=92.51 E-value=9.1 Score=50.48 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.9
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
++-|-+|++-|-+|+|||-.
T Consensus 165 ~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 165 DRENQSILITGESGAGKTEN 184 (1930)
T ss_pred cCCCceEeeecCCCCCcchh
Confidence 58899999999999999943
No 95
>PRK06620 hypothetical protein; Validated
Probab=92.33 E-value=0.068 Score=54.56 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=33.5
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC---EEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN---GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N---~tIfaYGqTgSGKT~Tm~G 150 (705)
..|+||..+...++. ..|..+. .+.+. . |+| -.+|-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~N~-~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSSND-QAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEecccHH-HHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 358999888766554 5665542 33321 1 444 3589999999999998853
No 96
>KOG0977|consensus
Probab=92.27 E-value=18 Score=41.92 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDN 598 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~ 598 (705)
.+....+.+.+++.-+...|..|+++....
T Consensus 201 d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455666666666666666666555443
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.23 E-value=0.1 Score=60.87 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=36.0
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...|+||..+-..++ .-+|. .+..+++..-.+||. ||-||.+|+||||.+..
T Consensus 282 ~~~~TFDnFvvG~sN-~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGASN-RFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCcc-HHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 456999987755543 34553 345555544456786 89999999999998854
No 98
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.22 E-value=8.5 Score=36.89 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
..++..+.+.++++..+...+.....++.++.+++.........+.++...++..
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444444455555544444444444444444333333
No 99
>KOG1853|consensus
Probab=92.20 E-value=16 Score=37.79 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 591 EIEGFLDNVRQITKEYSYQQAI 612 (705)
Q Consensus 591 e~e~~~~~~~~~~~el~l~~~i 612 (705)
+...|.+.-|.|..||.+..--
T Consensus 165 svqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 165 SVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566677777776643
No 100
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=4.6 Score=46.67 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQ 614 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~ 614 (705)
....+...+.....+++..+.|+.+++.+++.+.++.+++..++.++. ......++.+.+...|..|+++|.-+..-++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555666666666666666666666666665555 3333455666666666666666655554444
Q ss_pred h
Q psy11229 615 K 615 (705)
Q Consensus 615 ~ 615 (705)
.
T Consensus 499 ~ 499 (652)
T COG2433 499 E 499 (652)
T ss_pred H
Confidence 3
No 101
>KOG0982|consensus
Probab=92.10 E-value=16 Score=40.49 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Q psy11229 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEY-SYQQAIIQKFIP 618 (705)
Q Consensus 574 l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el-~l~~~ii~~fiP 618 (705)
.+....++.|....|+++++..++-|.++.++| .++..+.+.-.|
T Consensus 351 eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p 396 (502)
T KOG0982|consen 351 EQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANP 396 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345556677777889999999999999999996 455555555544
No 102
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.05 E-value=3.2 Score=41.72 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQ 497 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~ 497 (705)
..++..+......+..++..+.
T Consensus 80 ~~ELael~r~~~el~~~L~~~~ 101 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELN 101 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3444444444445555554443
No 103
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.85 E-value=12 Score=41.87 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELL 496 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l 496 (705)
-.++++.+.+...|.+++.+.
T Consensus 270 ~~~i~~lk~~n~~l~e~i~ea 290 (622)
T COG5185 270 NTDIANLKTQNDNLYEKIQEA 290 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 104
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.82 E-value=27 Score=42.53 Aligned_cols=43 Identities=5% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceee
Q psy11229 594 GFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWEL 640 (705)
Q Consensus 594 ~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l 640 (705)
.....+.+|+|+......+.+.|.-.-+..++.. .-....|++
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~----~~~~~~~~v 415 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ----NYVPVDARV 415 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcEE
Confidence 3456778888998888888888887766666665 234455554
No 105
>PRK02224 chromosome segregation protein; Provisional
Probab=91.72 E-value=13 Score=45.94 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.+...+...+.+...+++.++.+..+++....+++.....+..+..++.++
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555555544444
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.54 E-value=7 Score=39.75 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=5.5
Q ss_pred HHHHHHhcCC
Q psy11229 609 QQAIIQKFIP 618 (705)
Q Consensus 609 ~~~ii~~fiP 618 (705)
.-+|+-+++|
T Consensus 187 lGlilp~l~p 196 (206)
T PRK10884 187 LGLLLPHLIP 196 (206)
T ss_pred HHHHhccccc
Confidence 4455555555
No 107
>PRK03918 chromosome segregation protein; Provisional
Probab=91.39 E-value=14 Score=45.49 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=7.3
Q ss_pred EEcCeeeeccC
Q psy11229 190 IYNEEIRDLLS 200 (705)
Q Consensus 190 IynE~v~DLL~ 200 (705)
|....+..++.
T Consensus 132 ~~Qg~~~~~~~ 142 (880)
T PRK03918 132 IRQGEIDAILE 142 (880)
T ss_pred EeccchHHHhc
Confidence 66777777664
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.36 E-value=13 Score=34.98 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
-+.+..++++...++..+..+......++..+......+..++..+...+..+.+.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777777777777777777777777777776666666554
No 109
>PRK12377 putative replication protein; Provisional
Probab=91.31 E-value=0.14 Score=53.42 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=37.3
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
..+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34788766555667667754 567777776665 4578899999999999854
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.20 E-value=10 Score=37.65 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy11229 488 SMVEKLELLQ 497 (705)
Q Consensus 488 ~l~~k~~~l~ 497 (705)
.....+..++
T Consensus 85 ~~~~~l~~l~ 94 (191)
T PF04156_consen 85 ELQQQLQQLQ 94 (191)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 111
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.09 E-value=5.7 Score=40.42 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=4.1
Q ss_pred HHHHHHhcCC
Q psy11229 609 QQAIIQKFIP 618 (705)
Q Consensus 609 ~~~ii~~fiP 618 (705)
.-+|+--++|
T Consensus 183 ~GlllGlilp 192 (206)
T PRK10884 183 IGLLLGLLLP 192 (206)
T ss_pred HHHHHHHHhc
Confidence 3344444444
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.09 E-value=28 Score=42.28 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKE 591 (705)
Q Consensus 512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e 591 (705)
+..+..+....++.+......+.|...+..+..........+..+++|...+...|.++..++.....++..++. .
T Consensus 325 ~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~----k 400 (775)
T PF10174_consen 325 EVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK----K 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 333344444455555555555566666666665555566666666666666666666666666665555555544 3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 592 IEGFLDNVRQITKEYS 607 (705)
Q Consensus 592 ~e~~~~~~~~~~~el~ 607 (705)
++.+.+.+++-.+++.
T Consensus 401 ie~Lee~l~ekd~ql~ 416 (775)
T PF10174_consen 401 IENLEEQLREKDRQLD 416 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 113
>KOG0612|consensus
Probab=91.01 E-value=16 Score=45.57 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE-RKD-----VQRENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e-~~d-----~~~e~~~e~e~~~~~~~~~~~el 606 (705)
+...+......+....+++.+++|++..+.+...++++.. +.....| +.+ +...+.+++..+.+...+...|.
T Consensus 612 e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~ 690 (1317)
T KOG0612|consen 612 EKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEH 690 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666777777777777777777766655 3222222 222 33355666666666666666665
Q ss_pred HHH
Q psy11229 607 SYQ 609 (705)
Q Consensus 607 ~l~ 609 (705)
+..
T Consensus 691 ~~~ 693 (1317)
T KOG0612|consen 691 HRL 693 (1317)
T ss_pred HHH
Confidence 444
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.01 E-value=12 Score=40.64 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN-------RKEIEGFLDNVRQITKE 605 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~-------~~e~e~~~~~~~~~~~e 605 (705)
++.+|.+...+......++..+++++..++.+|+....+......++.+.+... ..|...+.+.++.+++.
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555555555555555555555444332 34455555555544443
No 115
>PRK09087 hypothetical protein; Validated
Probab=90.96 E-value=0.16 Score=52.33 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=32.2
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|+||..+..+++. .+|.. +.....-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N~-~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESNR-AAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCchH-HHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 458999988655544 46663 333222235568999999999999885
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.89 E-value=8.3 Score=46.50 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI 602 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~ 602 (705)
..++++.++...+....+.++|....+.-+.+.++++.+...+....-.+.+-+.++..|.+.+.+.++.+
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445556666666666666666665555544433333344444444444444444433
No 117
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.85 E-value=19 Score=36.01 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy11229 426 KYQKEISELKKKL 438 (705)
Q Consensus 426 ~~~~ei~~Lk~~l 438 (705)
+|+.|...|+..+
T Consensus 19 ~L~~en~kL~~~v 31 (193)
T PF14662_consen 19 KLADENAKLQRSV 31 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.75 E-value=24 Score=38.28 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQ------------EESEGLSKKLKKVSSMLLAAKEERK-- 582 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~------------~e~~~~~~~l~~~~~~l~~~~~e~~-- 582 (705)
++.+.+.+.........+|++.+.+...++..+.+++...+ .|-+.+-..|+++..++.+++.++.
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555444444444444322 3445555666666666666666665
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 583 -DVQRENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 583 -d~~~e~~~e~e~~~~~~~~~~~el 606 (705)
|..+|...||..+......|+.||
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888886
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=90.73 E-value=0.16 Score=52.58 Aligned_cols=47 Identities=17% Similarity=0.484 Sum_probs=29.2
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhC---CC-CEEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLS---GF-NGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~---G~-N~tIfaYGqTgSGKT~Tm~G 150 (705)
..|+||.-+... +..++ ..+....+ ++ +..++-||.+|+||||-+.+
T Consensus 14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 358999887442 22333 33333322 22 24688999999999998753
No 120
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.67 E-value=24 Score=36.91 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
.+++...|+..-....++...|..++......+.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433334444444444443333333
No 121
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.61 E-value=18 Score=38.88 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
..++...............+.+..++..+..+..+|..+......++..+.+++..+..++..+...|..++.++.-...
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 34444444444444455555556666666666666667777777777777777777777777777777777777654433
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.49 E-value=5.6 Score=39.92 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy11229 481 RAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 481 ~~~~~~~~l~~k~~~l~~ 498 (705)
..+.++..+...-..+..
T Consensus 78 ~l~~ELael~r~~~el~~ 95 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQ 95 (194)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 333333333333333333
No 123
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.29 E-value=22 Score=45.60 Aligned_cols=93 Identities=30% Similarity=0.450 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDNV 599 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~ 599 (705)
.++.......+.+..+++..+.+...+++++..+..++...+.++..+..++..+..++.++ ...++.+++++..++
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555566666666666666666666666665555555555555444444333 444555566666666
Q ss_pred HHHHHHHHHHHHHHHh
Q psy11229 600 RQITKEYSYQQAIIQK 615 (705)
Q Consensus 600 ~~~~~el~l~~~ii~~ 615 (705)
+.+..++.-...-++.
T Consensus 894 ~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 894 RELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555444443333
No 124
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.29 E-value=19 Score=46.73 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
.+...+..+..+..++....+.+.+.+...++.+...
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1311)
T TIGR00606 913 PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEK 949 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443344444444444444433
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.29 E-value=0.2 Score=51.82 Aligned_cols=49 Identities=14% Similarity=0.403 Sum_probs=31.7
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
+..|+||..+.. .+..++..+ ..+.. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345788876654 455566443 33332 22224789999999999999854
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.27 E-value=21 Score=42.09 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
.+.++..++..++.+...+..++.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~ 349 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEA 349 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443
No 127
>KOG0999|consensus
Probab=90.25 E-value=4.9 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q psy11229 421 DALLIKYQKEISELKKKLEEAS 442 (705)
Q Consensus 421 ~~~l~~~~~ei~~Lk~~l~~~~ 442 (705)
+..+..|+.+|++|-.+|.+..
T Consensus 7 eq~ve~lr~eierLT~el~q~t 28 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTT 28 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999987654
No 128
>PRK06526 transposase; Provisional
Probab=90.25 E-value=0.17 Score=53.19 Aligned_cols=45 Identities=29% Similarity=0.278 Sum_probs=28.3
Q ss_pred eceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 101 FDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
||.-+.+.-++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 333344455555555443444443 3444 78899999999999875
No 129
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.20 E-value=29 Score=37.09 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 488 SMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 488 ~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
.+..+|..|++.+.. .+++..+...+.....++...+....++...+++.-.+...+.+.+..+-++.+.+.++.
T Consensus 135 ~lvq~I~~L~k~le~-----~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 135 ELVQKIKELRKELED-----AKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544322 122333333334444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 568 KKVSSMLLAAKEERKD 583 (705)
Q Consensus 568 ~~~~~~l~~~~~e~~d 583 (705)
..+..++-.....+..
T Consensus 210 de~he~~ve~~~~~~e 225 (294)
T COG1340 210 DELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 5444444444433333
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.13 E-value=5 Score=42.14 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e 593 (705)
..++.+..+....++.+|+....+...+..+..+++++++....+|+++..++..++..|.+.++-+..+.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555555555555555555555555544444444
No 131
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.12 E-value=26 Score=36.37 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy11229 427 YQKEISELKKKL 438 (705)
Q Consensus 427 ~~~ei~~Lk~~l 438 (705)
...++..|..++
T Consensus 34 aE~e~~~l~rri 45 (237)
T PF00261_consen 34 AEAEVASLQRRI 45 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.05 E-value=0.28 Score=51.19 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=35.8
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...+||........|..++.. +...++.+..|+. .++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 456788765555566667655 3555666555543 688899999999998854
No 133
>KOG4643|consensus
Probab=89.85 E-value=38 Score=41.57 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSS---MLLAAKEERKDVQRENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~---~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el 606 (705)
.......+++....+.+|.+.+.++|..+.. ....+.+.+.++ +.+..+...+.+.+..+.++.
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~l-E~~~~elkk~idaL~alrrhk 594 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDL-ELIHNELKKYIDALNALRRHK 594 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666655544 222233333332 222334444455554555543
No 134
>KOG0994|consensus
Probab=89.83 E-value=49 Score=41.28 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=3.2
Q ss_pred HHHhhccc
Q psy11229 403 ASRVKKIC 410 (705)
Q Consensus 403 a~rak~I~ 410 (705)
..++.++.
T Consensus 1521 ~e~v~sL~ 1528 (1758)
T KOG0994|consen 1521 QERVASLP 1528 (1758)
T ss_pred HHHHHhcc
Confidence 33444443
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.63 E-value=25 Score=35.59 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
.+..+.........+++.+..|..|.+.+..++.++..+..++.
T Consensus 84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555666666666666655555555444444
No 136
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.62 E-value=12 Score=32.16 Aligned_cols=64 Identities=9% Similarity=0.248 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSY 608 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l 608 (705)
|...+...+.++....+....++..-.+++..++.-+-++...|..-+..+++.|..|.++|.-
T Consensus 12 Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 12 EFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444455555566666666777788888888888999999999999999988753
No 137
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.46 E-value=21 Score=37.25 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=17.4
Q ss_pred HHHHHHhcCChHH-----HHHHHhhcccccccCceeec
Q psy11229 609 QQAIIQKFIPTKY-----LELMTQNATWNEDIGEWELK 641 (705)
Q Consensus 609 ~~~ii~~fiP~~~-----~~ki~~~~~wdee~~~W~l~ 641 (705)
...+-+.=+|.-| ++-....+.|.-..+.|+=.
T Consensus 137 ~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~~~~~~ 174 (251)
T PF11932_consen 137 RAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIEVYQGT 174 (251)
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHHHHhCCceeEEEEE
Confidence 3333344355543 44455566676666666643
No 138
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.45 E-value=13 Score=43.91 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el 606 (705)
+.++.-.+...|.+.+|+
T Consensus 504 k~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 139
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.43 E-value=0.19 Score=56.97 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=27.0
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...+..++..-+|.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456678889999999999999999999975
No 140
>PRK08116 hypothetical protein; Validated
Probab=89.40 E-value=0.22 Score=52.73 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=36.1
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhC--CCCEEEEEeccCCCCcccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLS--GFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~--G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
-..++||... .+..+...|.. +...++.+.+ +.|..++-||.+||||||.+.
T Consensus 79 ~~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 79 FRNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred HHhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 3457888755 45556566654 5666776654 345568999999999999874
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.31 E-value=0.22 Score=56.40 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=33.4
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
..|+||.-+-.. ++...|..+ ..+.+. -..||. +|-||++|+||||.|..
T Consensus 100 ~~~tFdnFv~g~-~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVGP-GNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccCC-chHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 458999877543 455566543 334432 123675 89999999999998853
No 142
>KOG0999|consensus
Probab=89.22 E-value=23 Score=40.55 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE---ESEGLSKKLKKVSSMLLAA---KEERKDVQRENRKEI 592 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~---e~~~~~~~l~~~~~~l~~~---~~e~~d~~~e~~~e~ 592 (705)
..++.+|.+.+-++..|-....+.+++.+.+++..++|+. |-+++.-.++++.....-+ -++...+.....+++
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQl 231 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQL 231 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888999999999999999999888765 4567777777666554333 344445667777888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcCChHHH
Q psy11229 593 EGFLDNVRQITKE-YSYQQAIIQKFIPTKYL 622 (705)
Q Consensus 593 e~~~~~~~~~~~e-l~l~~~ii~~fiP~~~~ 622 (705)
|+.++++..-..+ +.|+. =++.++..+.+
T Consensus 232 EEALeTlq~EReqk~alkk-EL~q~~n~e~~ 261 (772)
T KOG0999|consen 232 EEALETLQQEREQKNALKK-ELSQYRNAEDI 261 (772)
T ss_pred HHHHHHHHhHHHHHHHHHH-HHHHhcchhhh
Confidence 8888887543322 22222 24555555443
No 143
>KOG0964|consensus
Probab=88.96 E-value=66 Score=39.54 Aligned_cols=108 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593 (705)
Q Consensus 514 q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e 593 (705)
.+..++.++.++.+.-.+..++...+.+...++..+...+.++.++.+.+..+-+.+|.+-+.++..+..+.+...+.-.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666677777777777777777888888888888888888888888887777777766554444333
Q ss_pred HH-----------HHHHHHHHHHHH---HHHHHHHhc-CChHH
Q psy11229 594 GF-----------LDNVRQITKEYS---YQQAIIQKF-IPTKY 621 (705)
Q Consensus 594 ~~-----------~~~~~~~~~el~---l~~~ii~~f-iP~~~ 621 (705)
.+ +..++++..+++ ..--+++.| +|+.+
T Consensus 496 ~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f 538 (1200)
T KOG0964|consen 496 NLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKF 538 (1200)
T ss_pred HHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHH
Confidence 33 345667777777 444555655 55544
No 144
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.96 E-value=45 Score=37.58 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
+..+...++.|.+.+...+.|+-+++........|+++|.
T Consensus 396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444445555544445555555554444444444443
No 145
>PRK12704 phosphodiesterase; Provisional
Probab=88.87 E-value=24 Score=41.04 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 560 SEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 560 ~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
++.+.+.|.+....+...+.++.++
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333333333
No 146
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.86 E-value=21 Score=45.80 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=48.1
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEecc-CCCCccccccccCCCC-------CCCCchHHHHHHHH
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQ-TGTGKTFTMEGVNNVP-------ELKGIIPNSFAHIF 169 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGq-TgSGKT~Tm~G~~~~~-------~~~GIipr~~~~lF 169 (705)
.=.||.-|=|.++-.-||+.. + -.|--|||++|-- .|-|=.|-+.+.+-.+ ...++.+.....++
T Consensus 55 rksF~~yYLP~~nSyIIYEY~-R------~~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~ 127 (1201)
T PF12128_consen 55 RKSFDDYYLPYSNSYIIYEYQ-R------EDGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELI 127 (1201)
T ss_pred hhhHHHHcCCCCCceEEEeee-c------cCCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHHH
Confidence 346788787887777777643 2 1476677777744 3334458887754322 11356777788888
Q ss_pred HhhhhcCCCceEEEEEE
Q psy11229 170 GHIAKADESVKFLVRVS 186 (705)
Q Consensus 170 ~~i~~~~~~~~~~V~vS 186 (705)
..+... +..++=.++
T Consensus 128 r~~~~~--gv~~S~~i~ 142 (1201)
T PF12128_consen 128 RELRRK--GVQVSRKIT 142 (1201)
T ss_pred HHHHhC--CCeeecCcC
Confidence 877654 444444444
No 147
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.80 E-value=32 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESE 561 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~ 561 (705)
+...|...++.....+.++..|++++.
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 333333333333333333333333333
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.79 E-value=23 Score=33.93 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~~~~~~e 605 (705)
.+..++..|.++++...++|+....++..+......+ -.....++..+...+..+...
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555666666666666666655555555443322221 222233444444444444443
No 149
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.68 E-value=50 Score=43.27 Aligned_cols=12 Identities=42% Similarity=0.393 Sum_probs=8.6
Q ss_pred cchhhhhccCCC
Q psy11229 365 KLTRILQDSLGG 376 (705)
Q Consensus 365 kLTrLLqdsLgG 376 (705)
.+|+.|++||-.
T Consensus 212 ~i~~fl~~yll~ 223 (1486)
T PRK04863 212 AITRSLRDYLLP 223 (1486)
T ss_pred hHHHHHHHHcCC
Confidence 578888887754
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.59 E-value=0.32 Score=55.34 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=32.7
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...|+||...... .+...|.. +..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g~-~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVGK-SNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccCC-CcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 3568999855333 44455544 3444443223455 478899999999999854
No 151
>KOG0977|consensus
Probab=88.55 E-value=21 Score=41.31 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 547 IDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 547 ~~~e~~~~~l~~e~~~~~ 564 (705)
.+++.+.++|.++++.+.
T Consensus 200 ~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 445666666666666665
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.48 E-value=22 Score=36.83 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT 603 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~ 603 (705)
.++...+.+.+++.+++.+..|...+.+.+....+++..++.-|+..+.+....+..+..+.+ |..-+.+.|.++.
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e----ey~~Lk~~in~~R 101 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE----EYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344445566677777777777888888888888888877777777777766666666655544 4555566666666
Q ss_pred HH
Q psy11229 604 KE 605 (705)
Q Consensus 604 ~e 605 (705)
++
T Consensus 102 ~e 103 (230)
T PF10146_consen 102 KE 103 (230)
T ss_pred HH
Confidence 66
No 153
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.31 E-value=0.35 Score=54.18 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=31.7
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
...|+||.... ...+...|.. +..+...--..+| .+|-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 35689998543 2345455643 3444443212245 47789999999999884
No 154
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.05 E-value=29 Score=42.13 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
..++++..+++............+....++...+...+..+.+..+.+..++..+..++..+..-+.
T Consensus 343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554445555555555554444444444444444444444444444444433333
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.04 E-value=25 Score=33.59 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.+.|.+.++..+++....+.++....+.+.....+...+..+.+.+..+..
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 345555555555555555555555555554444444444444444444433
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.03 E-value=46 Score=36.62 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
+..+++....++...|+..+...-+++..+++...+|+.+...++
T Consensus 134 kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666677777666677777777666665554444
No 157
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.93 E-value=43 Score=36.08 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~ 590 (705)
.+..+..+|..+.......+.++...-.+..+++.++..+--|.+.+...|......-..+..|+.++++.+..
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666555555666666666667777777777777777777777766555555566666666655543
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.92 E-value=57 Score=37.49 Aligned_cols=49 Identities=6% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceee
Q psy11229 592 IEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWEL 640 (705)
Q Consensus 592 ~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l 640 (705)
.-+...++..|.|+......+.+.+.-.-+..++.....=......|++
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~v 398 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRI 398 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEE
Confidence 3456678888999999999998888877777676655443344566776
No 159
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.73 E-value=0.45 Score=48.25 Aligned_cols=47 Identities=17% Similarity=0.437 Sum_probs=31.7
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|+||....+ .+..++... +.++ ..+....|+-||++||||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45888887732 444555543 2222 24567789999999999999874
No 160
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.72 E-value=21 Score=35.92 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~ 590 (705)
++...+.+.+..+..++++...+..+.+...+.|.++......+++++.+...+|+.
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455566666667777777777777776666653
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.66 E-value=47 Score=42.75 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
..+++.+...+..+.++.+++++
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~ 628 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEK 628 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.64 E-value=27 Score=42.25 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY 553 (705)
Q Consensus 513 ~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~ 553 (705)
.|-+.+.+++++++..+...+.|.+++++..+....+.+++
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333333333
No 163
>KOG4674|consensus
Probab=87.60 E-value=32 Score=45.15 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhccc
Q psy11229 393 YEETISTLRYASRVKKIC 410 (705)
Q Consensus 393 ~~ETlsTLrfa~rak~I~ 410 (705)
...-.+-+.|-.+=+.|.
T Consensus 1148 ~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1148 LSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 344555666666666553
No 164
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.60 E-value=51 Score=36.58 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR----ENRKEIEGFLDNVRQITKEYSYQQAIIQ 614 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~----e~~~e~e~~~~~~~~~~~el~l~~~ii~ 614 (705)
.+..+..++.++...+..+......+..++.++..... +...++.++...+..+..++.....-++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444433333222 2223344555555555555544444333
No 165
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.58 E-value=0.45 Score=52.13 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=17.8
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345678999999999999976
No 166
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.43 E-value=0.34 Score=55.10 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=32.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.|+||..+...+ +...|.. +..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~~-n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGSS-NEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCCc-HHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 489998775554 4456633 3444432111345 478899999999999854
No 167
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.41 E-value=28 Score=36.59 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFL 596 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~ 596 (705)
+..++.+.....|+++.+..-+....++..-..+..++..++..+.-+.-.|...+..+..+..+..+=+.+++
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555666555566666555555555555555555555555554444444444
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.22 E-value=0.36 Score=53.78 Aligned_cols=51 Identities=29% Similarity=0.531 Sum_probs=32.1
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...|+||......+.+ -.|... .-|...-.+ || -||-||.+|+||||-|..
T Consensus 81 ~~~ytFdnFv~g~~N~-~A~aa~--~~va~~~g~~~n-plfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGPSNR-LAYAAA--KAVAENPGGAYN-PLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCCchH-HHHHHH--HHHHhccCCcCC-cEEEECCCCCCHHHHHHH
Confidence 4569999877665544 333221 122222222 55 588999999999999954
No 169
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.20 E-value=0.36 Score=52.11 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=34.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G 150 (705)
..+||.+-..+..+..++.. +...++....| ....++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 35666554333356667764 35666665543 233689999999999999865
No 170
>KOG2391|consensus
Probab=87.18 E-value=22 Score=38.51 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 590 KEIEGFLDNVRQITKEYSYQQAII 613 (705)
Q Consensus 590 ~e~e~~~~~~~~~~~el~l~~~ii 613 (705)
.+++.++.+.|.|.||--+.+...
T Consensus 331 i~l~~yLr~VR~lsReQF~~rat~ 354 (365)
T KOG2391|consen 331 IDLDQYLRHVRLLSREQFILRATM 354 (365)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999998855554443
No 171
>PRK08727 hypothetical protein; Validated
Probab=87.04 E-value=0.37 Score=49.73 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=27.9
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC-EEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN-GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N-~tIfaYGqTgSGKT~Tm~G 150 (705)
..|+||.-+..++. ....+ ..+ ..|.. -.|+-||++||||||.+..
T Consensus 14 ~~~~f~~f~~~~~n---~~~~~-~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPDG---LLAQL-QAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcHH---HHHHH-HHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 34789987754442 22211 222 12332 3499999999999998753
No 172
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.99 E-value=0.54 Score=52.15 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=17.5
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 345567899999999999986
No 173
>KOG0946|consensus
Probab=86.96 E-value=79 Score=38.14 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE 580 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e 580 (705)
+.++...+..++..+..+.+.++++|.+-.+..++.+..
T Consensus 735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455666666677777766677777775444444444433
No 174
>KOG0243|consensus
Probab=86.75 E-value=40 Score=41.86 Aligned_cols=10 Identities=50% Similarity=0.710 Sum_probs=7.1
Q ss_pred CCcccccccc
Q psy11229 142 TGKTFTMEGV 151 (705)
Q Consensus 142 SGKT~Tm~G~ 151 (705)
+-||||+.+.
T Consensus 93 ~~k~ftFDkV 102 (1041)
T KOG0243|consen 93 IDKTFTFDKV 102 (1041)
T ss_pred ccceeeccee
Confidence 4689998543
No 175
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.54 E-value=12 Score=39.27 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~ 601 (705)
+......+.++.......+.++..|..++..++.+++.+++++.+...++..++.+|.++.+....+-+-+.+..|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555444444333333333333
No 176
>PRK08181 transposase; Validated
Probab=86.52 E-value=0.53 Score=49.84 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=26.7
Q ss_pred eceeeCCCCChHHHHHhhh-hhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 101 FDTVFDANSKQLDIYNETA-RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~-~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
||.-+.+..+...+..-.. ...++ .|.| |+-||++|+||||-+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 3434444444444443221 12332 4555 78899999999999865
No 177
>KOG0249|consensus
Probab=86.46 E-value=14 Score=43.51 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 569 KVSSMLLAAKEERKDV---QRENRKEIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
.+.+++..++..+..+ .+.+....|+|...+.+|.+...-+..++.-|
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~ 270 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDH 270 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcch
Confidence 4444555555544443 34455667777777777775444444444444
No 178
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.21 E-value=0.39 Score=46.35 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=23.5
Q ss_pred hHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccccc
Q psy11229 111 QLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 111 Q~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm~G 150 (705)
|.++...+ ++.+-.+ ....++..++||||||++|..
T Consensus 8 Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 55555443 4443333 355566788999999999975
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.20 E-value=0.55 Score=42.81 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=19.0
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333433334556888999999999876
No 180
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.18 E-value=77 Score=37.29 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=8.2
Q ss_pred CCh-HHHHHHHhhc
Q psy11229 617 IPT-KYLELMTQNA 629 (705)
Q Consensus 617 iP~-~~~~ki~~~~ 629 (705)
.|- .++..|+..+
T Consensus 430 ~p~~~el~~l~~~~ 443 (582)
T PF09731_consen 430 RPFEDELRALKELA 443 (582)
T ss_pred CCHHHHHHHHHHhC
Confidence 554 4677777663
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=86.16 E-value=0.42 Score=49.62 Aligned_cols=132 Identities=18% Similarity=0.355 Sum_probs=73.7
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCE-EEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG-TIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~-tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
....+|...+-+...+.+.+.+ ..++.|..+ .++-||..|||||.++-+ ++......
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka-----------------ll~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA-----------------LLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH-----------------HHHHHhhc
Confidence 3456777777766666666554 567777744 367799999999988732 22222221
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCC-CcEEEccceEEEc-CCHHHHHHHHHhh
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD-IGVYVKDLSAYIA-NNADDMEKIMSLG 253 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~-~gv~v~~l~~~~v-~s~~e~~~ll~~g 253 (705)
+ +-.+||..+.+.||-.--. .+ +..|. --+++.+|+--.- .+...+..+|.-|
T Consensus 80 --G------LRlIev~k~~L~~l~~l~~----~l-------------~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 80 --G------LRLIEVSKEDLGDLPELLD----LL-------------RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG 134 (249)
T ss_pred --C------ceEEEECHHHhccHHHHHH----HH-------------hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc
Confidence 1 4567887777665531000 00 11111 1245566652222 2345666666666
Q ss_pred hccCccccccCCCCCCCceeEEE
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFS 276 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~ 276 (705)
...| .....+.+.|.|-|.|-.
T Consensus 135 le~~-P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 135 LEAR-PDNVLIYATSNRRHLVPE 156 (249)
T ss_pred cccC-CCcEEEEEecchhhccch
Confidence 5444 445556677888887653
No 182
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.16 E-value=59 Score=35.86 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhcCCCCCccCCCCc-chhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccCC
Q psy11229 340 SLSTLGNVISALVDGKCTHIPYRNSK-LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 418 (705)
Q Consensus 340 SL~aL~~vI~aL~~~~~~hVPyRdSk-LTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~ 418 (705)
+...||.||..+.|.=.+.| -| =-+|+ -| -.-.|.+|.+|=...---.-||..|-.+++-- .
T Consensus 8 ~vlvLgGVIA~~gD~ig~kv----GkarLrlF--~L-RPkqTAvlvtvltG~liSA~tLailf~~~~~l----------r 70 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKV----GKARLRLF--GL-RPKQTAVLVTVLTGMLISAATLAILFLLNRNL----------R 70 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhh----hHHHHhHh--cc-CcccceeehhhhhcchhhHHHHHHHHHhhhhH----------H
Confidence 56789999999876210000 00 01111 01 12345566665444333345666665554321 1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhc
Q psy11229 419 PKDALLIKYQKEISELKKKLEEA 441 (705)
Q Consensus 419 ~~~~~l~~~~~ei~~Lk~~l~~~ 441 (705)
..-..+.+++..+..++.+|...
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a 93 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTA 93 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 11234566677777777777543
No 183
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.10 E-value=42 Score=34.17 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=63.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL 556 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l 556 (705)
.++..+..++..+.+-+..++...- .+..+. +....-++..++-++.|+..+++........+++|..|
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfs----dl~~ry-------ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFS----DLHKRY-------EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554331 122222 22333344445555666666666666666666777666
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11229 557 QEESE----GLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFI 617 (705)
Q Consensus 557 ~~e~~----~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fi 617 (705)
..-.+ .-...|..+.....+-..-+.......+..+..+..++.+..+|..=+..|+|-.|
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432 22222222222222222222233333445566666667777777655555665444
No 184
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.09 E-value=69 Score=37.87 Aligned_cols=13 Identities=0% Similarity=0.368 Sum_probs=7.5
Q ss_pred hHHHHHHHHHhhh
Q psy11229 161 IPNSFAHIFGHIA 173 (705)
Q Consensus 161 ipr~~~~lF~~i~ 173 (705)
+.+.+.-||+.+.
T Consensus 76 ms~LySKL~~EaE 88 (786)
T PF05483_consen 76 MSRLYSKLYKEAE 88 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666554
No 185
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=85.93 E-value=0.68 Score=55.11 Aligned_cols=93 Identities=24% Similarity=0.321 Sum_probs=57.0
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCc--hHH--HHHHHHHhhhh
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGI--IPN--SFAHIFGHIAK 174 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GI--ipr--~~~~lF~~i~~ 174 (705)
|....=|.|.-.|..-+.. +++.+-.|.... ..+|.|||||||||...-......-| .|. ....|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557777888777754 455555664332 37899999999999764211100111 122 34456666655
Q ss_pred cCCCceEEEEEEEEEEEcCeee
Q psy11229 175 ADESVKFLVRVSYFEIYNEEIR 196 (705)
Q Consensus 175 ~~~~~~~~V~vS~~EIynE~v~ 196 (705)
.-++.....+|||+.-|.-+.|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 4344457788999999987643
No 186
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.83 E-value=0.52 Score=48.16 Aligned_cols=48 Identities=15% Similarity=0.379 Sum_probs=30.5
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|+||..+... .+ .++. .++.++.. .+.+..++-||.+||||||.+.
T Consensus 13 ~~~~~d~f~~~~-~~-~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE-NA-ELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC-cH-HHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 458899988332 22 3333 23444432 2345578999999999999874
No 187
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.68 E-value=28 Score=39.01 Aligned_cols=89 Identities=12% Similarity=0.211 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF 595 (705)
Q Consensus 516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~ 595 (705)
+.+....+++++..++...-+++.+..+.++..++..++++..++-.....++++...+.++...+..++.+++.++.-|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555666666666666666655554444444
Q ss_pred HHHHHHHHH
Q psy11229 596 LDNVRQITK 604 (705)
Q Consensus 596 ~~~~~~~~~ 604 (705)
-..+.-+.+
T Consensus 118 a~~L~A~~r 126 (420)
T COG4942 118 AEQLAALQR 126 (420)
T ss_pred HHHHHHHHh
Confidence 444433333
No 188
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.49 E-value=25 Score=35.76 Aligned_cols=45 Identities=36% Similarity=0.510 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
+++..+..++|...+.+++.+....++++.+|.-|...+..++++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444444444444444444444333333333
No 189
>KOG4643|consensus
Probab=85.36 E-value=79 Score=39.03 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 388 PASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 388 P~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
|...+-+-++..+.|++|+-..+-.
T Consensus 248 ~d~~ykerlmDs~fykdRveelked 272 (1195)
T KOG4643|consen 248 PDTTYKERLMDSDFYKDRVEELKED 272 (1195)
T ss_pred CCCccchhhhhhHHHHHHHHHHHhh
Confidence 3444556667777888888766543
No 190
>KOG1937|consensus
Probab=85.36 E-value=70 Score=36.01 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=9.5
Q ss_pred hhcccccccccCCcc
Q psy11229 406 VKKICNKARVNQDPK 420 (705)
Q Consensus 406 ak~I~n~~~~n~~~~ 420 (705)
+-.+-|.|..|.++.
T Consensus 176 ~~~~l~dpi~~sd~~ 190 (521)
T KOG1937|consen 176 CNAVLNDPIPNSDPR 190 (521)
T ss_pred HHHHhcCcccccchh
Confidence 334556777777764
No 191
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.32 E-value=65 Score=38.57 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
+++-+|..|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999876
No 192
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.13 E-value=58 Score=34.86 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l 574 (705)
.+-.+-++.++.+++..++...+-+.......+.+.+..++.++..+.+.|+.+....
T Consensus 194 ~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~ 251 (294)
T COG1340 194 EMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555556555555555555555555555555555554444444333
No 193
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.00 E-value=50 Score=35.70 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=9.1
Q ss_pred hHHHHHHHHHhHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLE 494 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~ 494 (705)
.+.+.+.++...+.|.+.+-
T Consensus 97 ~q~e~~qL~~qnqkL~nqL~ 116 (401)
T PF06785_consen 97 RQQESEQLQSQNQKLKNQLF 116 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444443
No 194
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.92 E-value=0.77 Score=48.18 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=35.8
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
++|.|..+-.....+..+|... ..++..+-.|.| ++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 5566665555666777888664 566666654444 56699999999998754
No 195
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=84.87 E-value=46 Score=33.52 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 546 ~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
...++.++..|.. +...+.+++..+..++..+.....+++.+++.++-.+...|++|++.|....-
T Consensus 84 ~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~ 153 (196)
T PF15272_consen 84 SEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNN 153 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455554444 44666778888888998888888899999999999999999999999875543
No 196
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=0.76 Score=50.85 Aligned_cols=25 Identities=48% Similarity=0.674 Sum_probs=18.3
Q ss_pred HHhhCC-CCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSG-FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G-~N~tIfaYGqTgSGKT~Tm 148 (705)
..++.| --..++.||.||||||.|+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 333443 3444999999999999886
No 197
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.70 E-value=49 Score=34.99 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA-I 612 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~-i 612 (705)
.++..++....+...++..+.++..+...+..||++...+|...+..+..++. =|=.+++.+..++.||+-+.. -
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~----vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS----VRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555554443 233444444444444432222 2
Q ss_pred HHhcCChHH
Q psy11229 613 IQKFIPTKY 621 (705)
Q Consensus 613 i~~fiP~~~ 621 (705)
+.+|--.++
T Consensus 242 ~~kfRNl~y 250 (267)
T PF10234_consen 242 VEKFRNLDY 250 (267)
T ss_pred HHHHHhHHH
Confidence 444444333
No 198
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.52 E-value=49 Score=33.50 Aligned_cols=117 Identities=15% Similarity=0.315 Sum_probs=65.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy11229 478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL- 556 (705)
Q Consensus 478 ~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l- 556 (705)
++-.++..+......+...+..+. .+.+........++....++...+....-|...+...+.+...+...+...
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~----~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~ 107 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQ----ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAG 107 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhc
Confidence 344444444444444444443322 112223333344555555665555555555555655555555555555443
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 557 ----------------------QEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN 598 (705)
Q Consensus 557 ----------------------~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~ 598 (705)
......+...+..+.++|........+....|..||.-|.+.
T Consensus 108 ~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eE 171 (202)
T PF06818_consen 108 RLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEE 171 (202)
T ss_pred cchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 122445666777777788777777777888888888777654
No 199
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.38 E-value=93 Score=36.63 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 553 YSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 553 ~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
|+.++++.+.+.++++.+......+...+..
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~ 408 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQG 408 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444444444333333
No 200
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.36 E-value=22 Score=38.51 Aligned_cols=123 Identities=26% Similarity=0.336 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY 553 (705)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~ 553 (705)
..+.++..+..+......-++.++.. ..........+..+..++++.++..+...+|+.+.++.++++..++++.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~-----~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEE-----SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544421 0111122223334444555555555556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 554 SSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 554 ~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
..++++.+..-+....+...+.+...+...+.. +.+-..+.+..|.+-
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~----q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKN----QYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 666665544444444444444444444444333 344444444444443
No 201
>KOG4809|consensus
Probab=84.32 E-value=66 Score=37.02 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEe
Q psy11229 240 ANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIET 281 (705)
Q Consensus 240 v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~ 281 (705)
+.+.......+.....++.+.-..++ +.+||.+|.|..-.
T Consensus 122 i~dlQ~q~k~lqrE~~nlkvelelke--ekLsssMnsIKTFw 161 (654)
T KOG4809|consen 122 LADLQRQAKLLQREEHNLKVELELKE--EKLSSSMNSIKTFW 161 (654)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHH--HHhcCccccccccc
Confidence 33444445555556666555444433 45778888875543
No 202
>KOG4809|consensus
Probab=84.24 E-value=86 Score=36.13 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
.++..+++....+.....++..+.++++...++.+..++|..-...+.++|+.+.--|.+-++|+.++..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666667777777777777777777776666666666666655555555555555543
No 203
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.05 E-value=47 Score=36.73 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 536 KKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE-----NRKEIEGFLDNVRQITKEYSYQQ 610 (705)
Q Consensus 536 ~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e-----~~~e~e~~~~~~~~~~~el~l~~ 610 (705)
-++......+...++++|..+.+-+..++..|.++..+|..+|.++.+.-.. --..+.+.+..++.=.+++-++-
T Consensus 272 ~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 272 IQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444555566777777777777777888888777887777777754211 11233444444444444444544
Q ss_pred HHHHh
Q psy11229 611 AIIQK 615 (705)
Q Consensus 611 ~ii~~ 615 (705)
.|+++
T Consensus 352 GVleh 356 (359)
T PF10498_consen 352 GVLEH 356 (359)
T ss_pred heehh
Confidence 44443
No 204
>KOG0976|consensus
Probab=84.00 E-value=94 Score=37.44 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 527 HRKQKEEELKKNIQEK 542 (705)
Q Consensus 527 ~~~~~~~~l~~~l~~~ 542 (705)
+.+.+.+.+...+++.
T Consensus 341 Earrk~egfddk~~eL 356 (1265)
T KOG0976|consen 341 EARRKAEGFDDKLNEL 356 (1265)
T ss_pred HHHHhhcchhHHHHHH
Confidence 3333333333333333
No 205
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.95 E-value=20 Score=43.66 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=3.3
Q ss_pred CccCCC
Q psy11229 358 HIPYRN 363 (705)
Q Consensus 358 hVPyRd 363 (705)
+||...
T Consensus 354 ~Vpa~~ 359 (771)
T TIGR01069 354 PIPANE 359 (771)
T ss_pred CccCCc
Confidence 566544
No 206
>PLN02939 transferase, transferring glycosyl groups
Probab=83.94 E-value=97 Score=38.63 Aligned_cols=157 Identities=21% Similarity=0.316 Sum_probs=90.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQKKVLVGGEN-----------LLEKAEIQQQLLDAAAQELEHRK---QKEEELKKNIQE 541 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~-----------~~~~~~~q~~~l~~~~~el~~~~---~~~~~l~~~l~~ 541 (705)
++-+..+..++..|.+-+..||.++....+. ..++.+..+.+|+.+..+.++.- .+...|+.++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (977)
T PLN02939 256 EERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDK 335 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3444555566667777777788777665443 33455556666665544443322 122334444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS-------------- 607 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~-------------- 607 (705)
.++..... ..|+-.-+.++.++++++.+...++..-+|+....+-++.+.+++.+++..+..|-+
T Consensus 336 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (977)
T PLN02939 336 LEASLKEA-NVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSE 414 (977)
T ss_pred HHHHHHHh-hHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHH
Confidence 33322210 011111224466777888888888888888888888888888888888877665522
Q ss_pred --------HHHHHHHhcCChHHHHHHHhhcccccc
Q psy11229 608 --------YQQAIIQKFIPTKYLELMTQNATWNED 634 (705)
Q Consensus 608 --------l~~~ii~~fiP~~~~~ki~~~~~wdee 634 (705)
.=..+++.+|++++...++ ...|.-|
T Consensus 415 ~~~~lll~id~~~~~~~~~~~~a~~lr-~~~~~~~ 448 (977)
T PLN02939 415 FWSRILLLIDGWLLEKKISNNDAKLLR-EMVWKRD 448 (977)
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHH-HHHHhhh
Confidence 1223456778887755544 4455444
No 207
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.78 E-value=50 Score=33.07 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~ 576 (705)
.|..+....+.+...+...+..||+|...+......+.....+
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 3444444445555555555555555554444444433333333
No 208
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.75 E-value=49 Score=33.17 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLK 568 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~ 568 (705)
+-+++..|+.+...++.+|.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 209
>KOG0964|consensus
Probab=83.70 E-value=91 Score=38.44 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=24.4
Q ss_pred eccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc------CCCceEEEEEEEEEE
Q psy11229 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA------DESVKFLVRVSYFEI 190 (705)
Q Consensus 137 YGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~------~~~~~~~V~vS~~EI 190 (705)
.|..||||+--+.. |.=.+.+.|.++... .++..-.|--.|+||
T Consensus 31 VGrNGSGKSNFF~A----------IrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEI 80 (1200)
T KOG0964|consen 31 VGRNGSGKSNFFHA----------IRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEI 80 (1200)
T ss_pred ecCCCCCchhhHHH----------hhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEE
Confidence 59999999965532 222344555555321 123344555567777
No 210
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.61 E-value=1.1e+02 Score=36.84 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=6.9
Q ss_pred HHHHHHhhccc
Q psy11229 621 YLELMTQNATW 631 (705)
Q Consensus 621 ~~~ki~~~~~w 631 (705)
|++|++..-.|
T Consensus 598 YLkkLE~~~~f 608 (861)
T PF15254_consen 598 YLKKLETNHSF 608 (861)
T ss_pred HHHhhcccccc
Confidence 67777665544
No 211
>PF13245 AAA_19: Part of AAA domain
Probab=83.51 E-value=0.6 Score=39.57 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
|...+. -+..+..-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444455 33445559999999999974
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.49 E-value=8.2 Score=37.79 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=4.8
Q ss_pred CChHHHHHHH
Q psy11229 617 IPTKYLELMT 626 (705)
Q Consensus 617 iP~~~~~ki~ 626 (705)
|+++++++|.
T Consensus 142 vs~ee~~~~~ 151 (169)
T PF07106_consen 142 VSPEEKEKLE 151 (169)
T ss_pred CCHHHHHHHH
Confidence 4455554444
No 213
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.48 E-value=21 Score=43.71 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=4.1
Q ss_pred CCccCCC
Q psy11229 357 THIPYRN 363 (705)
Q Consensus 357 ~hVPyRd 363 (705)
.+||-..
T Consensus 358 ~~vpa~~ 364 (782)
T PRK00409 358 LPIPANE 364 (782)
T ss_pred CCcccCC
Confidence 4666654
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.45 E-value=71 Score=34.56 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy11229 488 SMVEKLELL 496 (705)
Q Consensus 488 ~l~~k~~~l 496 (705)
-|..||..+
T Consensus 72 llq~kirk~ 80 (401)
T PF06785_consen 72 LLQTKIRKI 80 (401)
T ss_pred HHHHHHHHH
Confidence 345555444
No 215
>KOG4674|consensus
Probab=83.41 E-value=1.4e+02 Score=39.63 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQKKV 500 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~~~ 500 (705)
...+...+.+...|.++...|+.-+
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665543
No 216
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=83.39 E-value=61 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLK 568 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~ 568 (705)
++.+-.++++.+..+..+++
T Consensus 234 le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 234 LEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 217
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.35 E-value=88 Score=37.24 Aligned_cols=140 Identities=21% Similarity=0.277 Sum_probs=69.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy11229 480 KRAQSDHQSMVEKLELLQKKVLVG-GEN--LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK---- 552 (705)
Q Consensus 480 ~~~~~~~~~l~~k~~~l~~~~~~~-~~~--~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~---- 552 (705)
.++-.....|.+.+.+|+.....- +++ +.......+....++...+.+.+.+...++..+..+..+...+.+.
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445556667777776643321 111 2233333344444555555555555556666666665555544432
Q ss_pred ----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy11229 553 ----------YSSLQEESEGLSKKLK---KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPT 619 (705)
Q Consensus 553 ----------~~~l~~e~~~~~~~l~---~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~ 619 (705)
|..+-.+.+.+.+.+- .+...++.-....+...+....+..+..+.+..+..+.......+.....+
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 2333344444444432 222333332333333334445666666777777777766666666554443
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.18 E-value=0.6 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 113 ~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.+++. +...++.+-.+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 44533 456777776655 5589999999999998754
No 219
>KOG4603|consensus
Probab=83.14 E-value=43 Score=32.81 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKV 570 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~ 570 (705)
|++.+.+|.+++....++|+.+
T Consensus 121 mQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 220
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.85 E-value=87 Score=35.11 Aligned_cols=103 Identities=14% Similarity=0.210 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK 552 (705)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~ 552 (705)
.....++...+.....|...++.|+..+...-. -..+.+.+|--...+.++++..-++-...|+..|.+.
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~----------~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqe 284 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQ----------FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQE 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777888888877764432111 1122222222222333333444444444444455555
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 553 YSSLQEESEGL-SKKLKKVSSMLLAAKEERKDVQ 585 (705)
Q Consensus 553 ~~~l~~e~~~~-~~~l~~~~~~l~~~~~e~~d~~ 585 (705)
+.++++.++-. ..+.+.+|..+...+..+..++
T Consensus 285 La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 285 LASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 54444444332 2334455555555554444444
No 221
>KOG0989|consensus
Probab=82.84 E-value=0.93 Score=48.40 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred eceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccc
Q psy11229 101 FDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm 148 (705)
|-.=|-|.+.-+-++.+.+..++...+.+ .--..+-||+.|||||.|.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33444444444445555444445444444 4445778999999999996
No 222
>KOG1962|consensus
Probab=82.78 E-value=17 Score=37.01 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR 600 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~ 600 (705)
.+++...+.+....|++|++.++++|++...+..+++....+++.|+.+-.|+...-..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45566667777788888888888888888888888887777777777766665444333
No 223
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.64 E-value=0.67 Score=56.00 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHH-HHhcCChHHHHHHHhh
Q psy11229 598 NVRQITKEYSYQQAI-IQKFIPTKYLELMTQN 628 (705)
Q Consensus 598 ~~~~~~~el~l~~~i-i~~fiP~~~~~ki~~~ 628 (705)
.+.++-++|.+..+| |+=.||.|.+.+=++.
T Consensus 1069 RV~d~L~eL~~LGIIl~ep~~~~~~~~~~~~~ 1100 (1164)
T PTZ00112 1069 LFKIMLDKLVKMGILLIRPYIPLESLAKNKNK 1100 (1164)
T ss_pred HHHHHHHHHHhcCeEEecCCCchhhhhcccch
Confidence 455666677666666 8888999987775543
No 224
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=82.61 E-value=51 Score=37.87 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=9.7
Q ss_pred HhhhhHHHHHHHHHHHh
Q psy11229 336 KINLSLSTLGNVISALV 352 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~ 352 (705)
.|+.||..|.++...++
T Consensus 214 c~~~sl~~l~~~~~k~a 230 (518)
T PF10212_consen 214 CILSSLVSLTNGTGKIA 230 (518)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 45556666666555554
No 225
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.57 E-value=31 Score=40.16 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHhhhhcCCCceEEEEEEEEE
Q psy11229 159 GIIPNSFAHIFGHIAKADESVKFLVRVSYFE 189 (705)
Q Consensus 159 GIipr~~~~lF~~i~~~~~~~~~~V~vS~~E 189 (705)
|.|-+....|=+.+....-+....|+=+|-.
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~gG 194 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESYGG 194 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeccCc
Confidence 5556666665555554433333333333333
No 226
>PRK06921 hypothetical protein; Provisional
Probab=82.47 E-value=0.94 Score=47.87 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred hhhHHHHhhC---CCCEEEEEeccCCCCccccccc
Q psy11229 119 ARPIVDKVLS---GFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 119 ~~plV~~vl~---G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
+...++.+-. +....|+-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4455665532 2344678899999999998854
No 227
>PRK01156 chromosome segregation protein; Provisional
Probab=82.46 E-value=1.4e+02 Score=37.16 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999663
No 228
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.36 E-value=59 Score=32.80 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
..++..++..+....++...++.
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~ 89 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELER 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333444444433
No 229
>PRK10436 hypothetical protein; Provisional
Probab=82.33 E-value=0.62 Score=53.09 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=23.9
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.+..++..-+|.|+..|+||||||.||+.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 34556667789999999999999999953
No 230
>KOG0018|consensus
Probab=82.31 E-value=67 Score=39.89 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=19.9
Q ss_pred CCccCCCCcchhh---hhccCCCCcceeeEEeeCCCCCCHHHHHH
Q psy11229 357 THIPYRNSKLTRI---LQDSLGGNSKTVMCATVGPASYNYEETIS 398 (705)
Q Consensus 357 ~hVPyRdSkLTrL---LqdsLgGnskt~mI~~isP~~~~~~ETls 398 (705)
.|.--|+++++-+ |+..+-|-- -.||=-|-|...-|+=.++
T Consensus 481 r~e~sR~~~~~eave~lKr~fPgv~-GrviDLc~pt~kkyeiAvt 524 (1141)
T KOG0018|consen 481 RHEGSRRSRKQEAVEALKRLFPGVY-GRVIDLCQPTQKKYEIAVT 524 (1141)
T ss_pred hcccHHHHHHHHHHHHHHHhCCCcc-chhhhcccccHHHHHHHHH
Confidence 3555566666554 333343322 4555555666444444433
No 231
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.17 E-value=48 Score=31.66 Aligned_cols=93 Identities=15% Similarity=0.283 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN 588 (705)
Q Consensus 509 ~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~ 588 (705)
..++..++.+..+..++.........|...|.....+...+...+...++.+..+......+...+.....+...+.++.
T Consensus 45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~ 124 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEES 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677776666667777777777777777777777777776666666666666666666655555555
Q ss_pred HHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQ 601 (705)
Q Consensus 589 ~~e~e~~~~~~~~ 601 (705)
....+.|....+.
T Consensus 125 ~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 125 KSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555544443
No 232
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.05 E-value=50 Score=39.75 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL---KKVSSMLLAAKEERKDVQRENRKEIE 593 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l---~~~~~~l~~~~~e~~d~~~e~~~e~e 593 (705)
..+........|+..+.+.......+-.-|+.|.+|+=.+++.+ +.-+-++..+|.|++.+.++..--.-
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ 142 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS 142 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445666666665555556666777777766666654 34444667777777776665544333
No 233
>KOG4673|consensus
Probab=81.91 E-value=1.2e+02 Score=36.02 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=24.7
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q psy11229 384 ATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEA 441 (705)
Q Consensus 384 ~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~~ 441 (705)
..|||....|..-++||. |++.-- -..-..++.++..||++|...
T Consensus 398 s~~ssl~~e~~QRva~lE-----kKvqa~--------~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 398 SEVSSLREEYHQRVATLE-----KKVQAL--------TKERDALRREQKSLKKELAAA 442 (961)
T ss_pred ccccchHHHHHHHHHHHH-----HHHHHH--------HHhHHHHHHHHHHHHHHHHHh
Confidence 457777777777666663 221100 001123667777777777553
No 234
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.90 E-value=33 Score=41.03 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=10.8
Q ss_pred ccccHHHHHHhhhhHHHHHHHHH
Q psy11229 327 SGQRLKEASKINLSLSTLGNVIS 349 (705)
Q Consensus 327 ~g~rlkE~~~IN~SL~aL~~vI~ 349 (705)
.+..+++|..-=.+|..+.+.+.
T Consensus 167 ~~~~l~~Ai~~LlGl~~~~~L~~ 189 (650)
T TIGR03185 167 LASLLKEAIEVLLGLDLIDRLAG 189 (650)
T ss_pred chHHHHHHHHHHhCcHHHHHHHH
Confidence 34456666554344444444433
No 235
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.68 E-value=56 Score=32.76 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=10.1
Q ss_pred ceeeEEeeCCCCCCHHHHH
Q psy11229 379 KTVMCATVGPASYNYEETI 397 (705)
Q Consensus 379 kt~mI~~isP~~~~~~ETl 397 (705)
....+-.||+.+..-.+.+
T Consensus 18 ~~~~~q~vS~~p~tR~dVi 36 (189)
T PF10211_consen 18 GQLWIQFVSSAPATRQDVI 36 (189)
T ss_pred CeeeEeeeCCCCCCHHHHH
Confidence 3455666666655444433
No 236
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.50 E-value=27 Score=36.91 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 527 HRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601 (705)
Q Consensus 527 ~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~ 601 (705)
......+++++.+.....+...++.++.....|++..+++|+.+++--=+...|-..++.|.+..-+.+....|.
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445566666777777777777888777788877788877766655555555555555555555555554443
No 237
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.50 E-value=0.67 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.+..++..-+|.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566777889999999999999999854
No 238
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.48 E-value=1.1 Score=50.99 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=32.9
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHh--hCC--CCEEEEEeccCCCCccccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKV--LSG--FNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~v--l~G--~N~tIfaYGqTgSGKT~Tm~G 150 (705)
...|+||.-+... ++.-.|.. +..+.... ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 3468999877544 44444533 34444322 223 554 67799999999998853
No 239
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.39 E-value=0.65 Score=41.85 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred EEEeccCCCCccccccc
Q psy11229 134 IFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm~G 150 (705)
++.+|.||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57799999999999865
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.29 E-value=0.56 Score=42.98 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=13.1
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999876
No 241
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.11 E-value=78 Score=41.35 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.++--|.+|||||.+|-
T Consensus 26 ~~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVLE 42 (1353)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 34557999999999873
No 242
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=80.78 E-value=40 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy11229 599 VRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 599 ~~~~~~el~l~~~ii~~f 616 (705)
..+|+++++-+..||++|
T Consensus 102 ~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 102 LNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555554
No 243
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.61 E-value=0.87 Score=52.33 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=24.0
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.+..++..-+|.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556777788999999999999999953
No 244
>KOG0976|consensus
Probab=80.49 E-value=1.4e+02 Score=36.18 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNIQEK 542 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l~~~ 542 (705)
.+.+-+|+....+...+.+.|..+
T Consensus 137 ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 137 KENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhh
Confidence 334445555554444454444443
No 245
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.44 E-value=43 Score=40.99 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=7.6
Q ss_pred CCccCCCCcchh
Q psy11229 357 THIPYRNSKLTR 368 (705)
Q Consensus 357 ~hVPyRdSkLTr 368 (705)
..+||-|.-+|+
T Consensus 366 ~~i~~~~~i~~~ 377 (782)
T PRK00409 366 SEIPVFKEIFAD 377 (782)
T ss_pred ccccccceEEEe
Confidence 467776666554
No 246
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.40 E-value=1.3e+02 Score=35.70 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhcCCh
Q psy11229 600 RQITKEYSYQQAIIQKFIPT 619 (705)
Q Consensus 600 ~~~~~el~l~~~ii~~fiP~ 619 (705)
..|.+++-++...+|.+--.
T Consensus 254 e~L~~q~l~Qtql~d~lq~e 273 (617)
T PF15070_consen 254 EELHKQLLQQTQLMDRLQHE 273 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666676777777777543
No 247
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.38 E-value=0.74 Score=48.36 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=16.2
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 667888999999999998
No 248
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.28 E-value=0.73 Score=47.05 Aligned_cols=16 Identities=44% Similarity=0.733 Sum_probs=13.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999998
No 249
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.26 E-value=0.75 Score=46.24 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=16.7
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
+|.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4688999999999999984
No 250
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=80.00 E-value=0.94 Score=50.21 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+++.++. .++.|+..|+||||||+||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3444433 56778899999999999984
No 251
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.90 E-value=1.3e+02 Score=39.34 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.8
Q ss_pred HHHHHHhhccccc
Q psy11229 621 YLELMTQNATWNE 633 (705)
Q Consensus 621 ~~~ki~~~~~wde 633 (705)
++..+-..+-|++
T Consensus 390 el~~~a~~~~~~~ 402 (1353)
T TIGR02680 390 QLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHhcCCCc
Confidence 4555555555544
No 252
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.89 E-value=31 Score=37.86 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR---ENRKEIEGFLDNV 599 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~---e~~~e~e~~~~~~ 599 (705)
+++++......+.+..+.+.++....++..|.....+...++.+++....++..+..=+.-+.. .+......+...+
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQL 307 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHh
Confidence 3344444444444445555555555555555555555555555555555555555443333322 2233444444444
Q ss_pred HHHHHHHHHHHHHHHhc--CChHHHHHHHh
Q psy11229 600 RQITKEYSYQQAIIQKF--IPTKYLELMTQ 627 (705)
Q Consensus 600 ~~~~~el~l~~~ii~~f--iP~~~~~ki~~ 627 (705)
..+-=..-|....|-++ +|+++...+..
T Consensus 308 ~~l~GD~llaaa~isY~G~f~~~~R~~l~~ 337 (344)
T PF12777_consen 308 KNLVGDSLLAAAFISYLGPFTPEYRQELLK 337 (344)
T ss_dssp HHHHHHHHHHHHHHHCCCCTSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44444455666666666 45667666654
No 253
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=79.88 E-value=1.2e+02 Score=35.69 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 557 QEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 557 ~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
++.+..++..+..+...+..+..-+.+++.++-.+.+++.+.++++..+
T Consensus 193 ~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 193 REILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 3444555555666666666666666666666666666666666655554
No 254
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=79.69 E-value=32 Score=40.29 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 567 LKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604 (705)
Q Consensus 567 l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~ 604 (705)
++++..+.++.++.++.+..+.+.+++.+...++++.+
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333333444444444444444444444444444444
No 255
>PF12846 AAA_10: AAA-like domain
Probab=79.61 E-value=0.76 Score=48.23 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.7
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5678899999999999884
No 256
>KOG1962|consensus
Probab=79.56 E-value=13 Score=38.03 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.8
Q ss_pred HHHHHHHhhccccc
Q psy11229 399 TLRYASRVKKICNK 412 (705)
Q Consensus 399 TLrfa~rak~I~n~ 412 (705)
-|-|+..+++|.+.
T Consensus 56 lllfiDsvr~i~~~ 69 (216)
T KOG1962|consen 56 LLLFIDSVRRIQKY 69 (216)
T ss_pred HHHHHHHHHHHHHh
Confidence 35566666665543
No 257
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.54 E-value=1 Score=49.38 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=22.4
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
|.+..++.--.+.|+-.|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 44555554446889999999999999984
No 258
>KOG0288|consensus
Probab=79.31 E-value=1e+02 Score=34.47 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHHHhhcccccccCceeecccccC
Q psy11229 622 LELMTQNATWNEDIGEWELKCVAYT 646 (705)
Q Consensus 622 ~~ki~~~~~wdee~~~W~l~~~~~~ 646 (705)
-+.|..++.+--|.-+|....+.+-
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l 184 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFL 184 (459)
T ss_pred hcccchhhhhhhhccccccceeEEc
Confidence 3456666666666677776665543
No 259
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.31 E-value=1.1e+02 Score=33.95 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 424 LIKYQKEISELKKKL 438 (705)
Q Consensus 424 l~~~~~ei~~Lk~~l 438 (705)
+..++.++..|+.++
T Consensus 83 l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 83 AAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 260
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.28 E-value=1.3e+02 Score=35.47 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=6.2
Q ss_pred HHHhHHHHHHHHHHHH
Q psy11229 482 AQSDHQSMVEKLELLQ 497 (705)
Q Consensus 482 ~~~~~~~l~~k~~~l~ 497 (705)
++.....+...+..+.
T Consensus 322 ~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 322 AKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 261
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.84 E-value=74 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy11229 479 LKRAQSDHQSMVEKLELLQKKV 500 (705)
Q Consensus 479 ~~~~~~~~~~l~~k~~~l~~~~ 500 (705)
+.+++.....+..++..++.++
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777665
No 262
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=78.71 E-value=8.4 Score=40.12 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.|...|++|+|||.++.
T Consensus 28 ~i~vvG~~~~GKSt~l~ 44 (240)
T smart00053 28 QIAVVGGQSAGKSSVLE 44 (240)
T ss_pred eEEEEcCCCccHHHHHH
Confidence 47889999999999875
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.71 E-value=82 Score=32.22 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 521 AAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKK 566 (705)
Q Consensus 521 ~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~ 566 (705)
+..++++.....++++..|+..+-+...+++++..+-.++..+.++
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 3344444444444455555555555555555555555444433333
No 264
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=78.70 E-value=0.87 Score=40.92 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.1
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999998854
No 265
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=78.38 E-value=1.7e+02 Score=35.73 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN-------------- 598 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~-------------- 598 (705)
..|-..|++++.-+..+.+.-+....++..+..+|..+..++..++-|+.-++.+....-++..-.
T Consensus 109 ~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~ 188 (769)
T PF05911_consen 109 SALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLES 188 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555555565555556666667777777777777777777766655555444433322
Q ss_pred ---HHHHHHHHHHHHHHHHhcCC-hHHHHHHHh
Q psy11229 599 ---VRQITKEYSYQQAIIQKFIP-TKYLELMTQ 627 (705)
Q Consensus 599 ---~~~~~~el~l~~~ii~~fiP-~~~~~ki~~ 627 (705)
|-.|+.|.+-++.++-+=.| |--+.+.+.
T Consensus 189 vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ 221 (769)
T PF05911_consen 189 VKKIAKLEAECQRLRALVRKKLPGPAALAQMKN 221 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHhHH
Confidence 34455555555555555555 333444443
No 266
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.37 E-value=44 Score=40.84 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=6.4
Q ss_pred CCccCCCCcch
Q psy11229 357 THIPYRNSKLT 367 (705)
Q Consensus 357 ~hVPyRdSkLT 367 (705)
..+||-+.-++
T Consensus 361 ~~~~~~d~i~~ 371 (771)
T TIGR01069 361 SEIPYFEEIFA 371 (771)
T ss_pred ccccchhheee
Confidence 46777555443
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=78.36 E-value=1.2 Score=46.81 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=26.6
Q ss_pred eceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 101 FDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
||.-|.+..+...|..-..... +-.|.| |+-+|++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4444555555544443222222 234555 55799999999998754
No 268
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=78.33 E-value=1.2 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.7
Q ss_pred hhCCCCEEEEEeccCCCCcccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
++.--.+.|+..|+||||||.||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 333457899999999999999984
No 269
>KOG2129|consensus
Probab=78.24 E-value=1.2e+02 Score=33.85 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhc
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNA 629 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~ 629 (705)
--.+..|+.|++.+...+...+.. ...++....+|...-+++.+..+|.|.+|+.-...+..+.--.+-.--.-...
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~---~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeer 328 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKS---YQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEER 328 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 344555666776666555433221 12223333333333444555555666666665555555554443322222345
Q ss_pred ccccc
Q psy11229 630 TWNED 634 (705)
Q Consensus 630 ~wdee 634 (705)
+|||-
T Consensus 329 y~Ne~ 333 (552)
T KOG2129|consen 329 YLNEF 333 (552)
T ss_pred HHhhh
Confidence 56654
No 270
>KOG4673|consensus
Probab=78.19 E-value=1.5e+02 Score=35.29 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKE 579 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~ 579 (705)
++.|..++--++.++.++..+++-+..++.
T Consensus 536 ~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 536 KDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444444444555555444444444433
No 271
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.16 E-value=53 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
.|+....+|+.+.....+++..+.+++.++...+.+
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666666666666666555
No 272
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.05 E-value=1.5 Score=45.92 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=25.8
Q ss_pred hhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 119 ARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 119 ~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..+++..+.--.-|.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3556777777888999999999999999973
No 273
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=77.88 E-value=1.3 Score=42.34 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=19.7
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
+..++.|.| ++..|+||||||.....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 444556666 78899999999998653
No 274
>KOG1003|consensus
Probab=77.56 E-value=83 Score=31.64 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhcC
Q psy11229 427 YQKEISELKKKLEEAS 442 (705)
Q Consensus 427 ~~~ei~~Lk~~l~~~~ 442 (705)
.+.....+..+|.+..
T Consensus 23 aqErl~~a~~KL~Eae 38 (205)
T KOG1003|consen 23 AQERLATALQKLEEAE 38 (205)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555555555543
No 275
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.20 E-value=84 Score=38.26 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHh
Q psy11229 337 INLSLSTLGNVISALV 352 (705)
Q Consensus 337 IN~SL~aL~~vI~aL~ 352 (705)
|=+|=..+..||..|.
T Consensus 80 iL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 80 ILSSNEILKQVVDKLG 95 (754)
T ss_pred HHccHHHHHHHHHHcC
Confidence 4456666777776663
No 276
>KOG1937|consensus
Probab=77.17 E-value=1.3e+02 Score=33.87 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESE 561 (705)
Q Consensus 530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~ 561 (705)
.++++|++.++...++...-++-+..|..+.+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44556666666666665555555555555553
No 277
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.11 E-value=35 Score=38.18 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHHh
Q psy11229 337 INLSLSTLGNVISALV 352 (705)
Q Consensus 337 IN~SL~aL~~vI~aL~ 352 (705)
+.+.|-...+-+..|-
T Consensus 67 lqkkL~~y~~~l~ele 82 (395)
T PF10267_consen 67 LQKKLEQYHKRLKELE 82 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444434344443
No 278
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.06 E-value=1.4 Score=43.69 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.7
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588899999999998754
No 279
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=76.96 E-value=37 Score=36.87 Aligned_cols=88 Identities=16% Similarity=0.316 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK-----DVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTK-- 620 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~-----d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~~-- 620 (705)
.+-..|+.|+.=+ ..-++.++....+.++++-+. ++.+..+.|..++...+..|+.+|+.. .+|++
T Consensus 37 ~lske~a~l~~iv-~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l------LlPkDpn 109 (363)
T COG0216 37 KLSKEYAELEPIV-EKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL------LLPKDPN 109 (363)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCC
Confidence 3344444444322 223344444555555554444 456677778888888888888887764 46753
Q ss_pred ----------------H-----HHHHHhhcccccccCceeeccc
Q psy11229 621 ----------------Y-----LELMTQNATWNEDIGEWELKCV 643 (705)
Q Consensus 621 ----------------~-----~~ki~~~~~wdee~~~W~l~~~ 643 (705)
| -+..+-+..|- +..-|++.-+
T Consensus 110 d~knvilEIRagtGGdEAalFagDLfrMY~rYA-e~kgWk~ei~ 152 (363)
T COG0216 110 DDKNIILEIRAGTGGDEAALFAGDLFRMYSRYA-ESKGWKVEIL 152 (363)
T ss_pred CCcCeEEEEecCCCchHHHHHHHHHHHHHHHHH-HhCCCEEEEe
Confidence 1 34455566664 3466888644
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.89 E-value=1.2 Score=44.60 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445555555456668999999999883
No 281
>KOG2991|consensus
Probab=76.87 E-value=63 Score=33.70 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.8
Q ss_pred CCccCCCCcchhhhhccCCC
Q psy11229 357 THIPYRNSKLTRILQDSLGG 376 (705)
Q Consensus 357 ~hVPyRdSkLTrLLqdsLgG 376 (705)
.+||--.++-||||-|.+.|
T Consensus 93 ~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHhcCcccchhHHHHHh
Confidence 46777788999999888753
No 282
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.75 E-value=45 Score=28.18 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 536 KKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 536 ~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
...|.++++.+..|.+....|..........|+++..++......+.+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443334444444444444444444433
No 283
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.73 E-value=80 Score=31.04 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
.++...+-....+...+..++.
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ 27 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEE 27 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 284
>KOG0963|consensus
Probab=76.73 E-value=1.6e+02 Score=34.58 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHH-H---------hcCChHHHHHHHhhcccccccCceeecccccCC
Q psy11229 598 NVRQITKEYSYQQAII-Q---------KFIPTKYLELMTQNATWNEDIGEWELKCVAYTG 647 (705)
Q Consensus 598 ~~~~~~~el~l~~~ii-~---------~fiP~~~~~ki~~~~~wdee~~~W~l~~~~~~~ 647 (705)
.+.++.+||.++..|= - --.-+.+--.+.++..+..+.-..+.+....+|
T Consensus 345 DYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~ 404 (629)
T KOG0963|consen 345 DYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSG 404 (629)
T ss_pred cHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccch
Confidence 4456666766666651 1 111222344455555555555555555555554
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.60 E-value=38 Score=33.90 Aligned_cols=63 Identities=35% Similarity=0.450 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
...+..+..+.++++..+....+++..++.....+..-+++ ..+-++.+.+.++++.+..++.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR-~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER-EELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666554333322222 1233334444444444444444
No 286
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.88 E-value=1.5 Score=46.36 Aligned_cols=27 Identities=41% Similarity=0.559 Sum_probs=21.5
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 455555556778999999999999984
No 287
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.87 E-value=68 Score=29.81 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSL 556 (705)
Q Consensus 546 ~~~~e~~~~~l 556 (705)
..+++.+|..+
T Consensus 77 l~~l~~ry~t~ 87 (120)
T PF12325_consen 77 LEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 288
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.59 E-value=63 Score=34.86 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e 587 (705)
|.-++.-......++++.+..++.+...|.+.++.+...+..+..++.+++++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556777777777777666666666666666666666655443
No 289
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.13 E-value=60 Score=31.51 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHH
Q psy11229 573 MLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQ-KFIPTKY 621 (705)
Q Consensus 573 ~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~-~fiP~~~ 621 (705)
-...++.++.+++..+....+++...+..+...-.+...|-. .+--+..
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~a 101 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKA 101 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345555566666666666666666666666666666666655 3333333
No 290
>KOG0239|consensus
Probab=75.07 E-value=1.8e+02 Score=35.00 Aligned_cols=86 Identities=31% Similarity=0.579 Sum_probs=46.4
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~ 175 (705)
...+.|+.+......+..-+.. ..+.+..++++++.. +|++|++.+..... |++-+.+..+++.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPG---GLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcc---hhHHHhhhhcccccccC
Confidence 3456666666654443333322 234455666666654 88999999876543 66655555554432221
Q ss_pred CCCceEEEEEEEEEEEcCeeeeccC
Q psy11229 176 DESVKFLVRVSYFEIYNEEIRDLLS 200 (705)
Q Consensus 176 ~~~~~~~V~vS~~EIynE~v~DLL~ 200 (705)
. .. ..++.|++.+.|++.
T Consensus 93 ~-~~------~~~~~~~~~~~~~~~ 110 (670)
T KOG0239|consen 93 K-TS------NVVEAYNERLRDLLS 110 (670)
T ss_pred C-Cc------hhHHHHHHHHhhhcc
Confidence 1 10 145556666666664
No 291
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=74.89 E-value=3.6 Score=45.38 Aligned_cols=52 Identities=19% Similarity=0.440 Sum_probs=33.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCcccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++||.+.+-+.--+.+.+.+..|+.. ..+. |. ...|+-||++|||||+++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467777777666556666655555443 2222 21 3358889999999998763
No 292
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.82 E-value=1.4e+02 Score=33.03 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 425 IKYQKEISELKKKL 438 (705)
Q Consensus 425 ~~~~~ei~~Lk~~l 438 (705)
..++.|+++.--+|
T Consensus 194 ~eWklEvERV~PqL 207 (359)
T PF10498_consen 194 AEWKLEVERVLPQL 207 (359)
T ss_pred HHHHHHHHHHhhhh
Confidence 35666777666666
No 293
>KOG1003|consensus
Probab=74.78 E-value=98 Score=31.13 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQ 497 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~ 497 (705)
+.++.+.+..+..+..|+...+
T Consensus 17 eeele~aqErl~~a~~KL~Eae 38 (205)
T KOG1003|consen 17 EEELDRAQERLATALQKLEEAE 38 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555554444
No 294
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.77 E-value=69 Score=29.38 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCChH
Q psy11229 605 EYSYQQAIIQKFIPTK 620 (705)
Q Consensus 605 el~l~~~ii~~fiP~~ 620 (705)
+++.+...++.++|+.
T Consensus 106 ~~~~Y~~fL~~v~~~~ 121 (126)
T PF13863_consen 106 EYKKYEEFLEKVVPKS 121 (126)
T ss_pred HHHHHHHHHHHhcccc
Confidence 4566777777777753
No 295
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=74.55 E-value=2.1 Score=47.25 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=28.0
Q ss_pred CCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 108 NSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 108 ~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..|+.+|+.+...+.. .....+|.-|..||||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 34689999888654432 34456799999999999987
No 296
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.45 E-value=31 Score=33.69 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=7.7
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLEL 495 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~ 495 (705)
+++..+..+...|.+++..
T Consensus 72 eel~~ld~ei~~L~~el~~ 90 (169)
T PF07106_consen 72 EELAELDAEIKELREELAE 90 (169)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333
No 297
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.23 E-value=1.2e+02 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
+....++....|...++..+..+..+...+..-...+..++..|......+..+..|++
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443333333333333333333333333333333333333333
No 298
>KOG4360|consensus
Probab=74.02 E-value=1.7e+02 Score=33.58 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e 587 (705)
...++-....++.++.+++..+.-|++.+...|......-.....|.+++++.
T Consensus 231 q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333344444445555555555555444444443333333333333333333
No 299
>PRK01156 chromosome segregation protein; Provisional
Probab=73.62 E-value=2.3e+02 Score=35.23 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.9
Q ss_pred CCCEEEEeCCC
Q psy11229 45 LNGIITVKNPA 55 (705)
Q Consensus 45 ~~~~v~v~~p~ 55 (705)
..|...|..|.
T Consensus 22 ~~gi~~I~G~N 32 (895)
T PRK01156 22 DTGINIITGKN 32 (895)
T ss_pred CCCeEEEECCC
Confidence 34444444443
No 300
>KOG2991|consensus
Probab=73.16 E-value=1.2e+02 Score=31.59 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
+...+++...+|+-|..++...+.|.+..+|--|..+|+-..-
T Consensus 250 s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~ 292 (330)
T KOG2991|consen 250 SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK 292 (330)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 4455677777788888888888888888888777777765553
No 301
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.09 E-value=1.6 Score=43.70 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=20.7
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|...+-.|.+.+++-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444445668899999999999999773
No 302
>PRK11281 hypothetical protein; Provisional
Probab=73.05 E-value=1.8e+02 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHHh
Q psy11229 391 YNYEETISTLRYASRV 406 (705)
Q Consensus 391 ~~~~ETlsTLrfa~ra 406 (705)
.+|++|++.|.=+.+.
T Consensus 63 ~~l~~tL~~L~qi~~~ 78 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQ 78 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666655544433
No 303
>KOG0979|consensus
Probab=73.02 E-value=2.5e+02 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=15.1
Q ss_pred EEeccCCCCcccccc----ccCCCC
Q psy11229 135 FAYGQTGTGKTFTME----GVNNVP 155 (705)
Q Consensus 135 faYGqTgSGKT~Tm~----G~~~~~ 155 (705)
|-.|+.||||+.-+. |....|
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~P 70 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKP 70 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCCh
Confidence 567999999998753 344455
No 304
>PHA00729 NTP-binding motif containing protein
Probab=72.83 E-value=2.8 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=23.7
Q ss_pred hhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 119 ARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 119 ~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
++.++..+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4556666666555689999999999999764
No 305
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.73 E-value=1.5 Score=39.86 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.3
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 306
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.65 E-value=2.6 Score=45.38 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=26.7
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
-+||.+.+ |.++...+ ...+-.|....++-||++|||||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 34777764 44444332 222223443468889999999999874
No 307
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=72.50 E-value=1.9 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=19.6
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++..++.+. ..|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4455555543 456667999999998763
No 308
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.32 E-value=72 Score=38.29 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDME 550 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e 550 (705)
+.+....++..+.+.++|-+.++.+.+|...+-
T Consensus 443 l~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 443 LQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555544444333
No 309
>PF13479 AAA_24: AAA domain
Probab=71.81 E-value=2 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.1
Q ss_pred CEEEEEeccCCCCcccccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTMEGV 151 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~G~ 151 (705)
+..++.||++|+|||++....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 456889999999999987543
No 310
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=71.77 E-value=2 Score=46.27 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=20.5
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++..++.+ .+.|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567889999999999873
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.75 E-value=1.6 Score=43.87 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=14.9
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47889999999999984
No 312
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=71.68 E-value=1.4 Score=49.21 Aligned_cols=51 Identities=20% Similarity=0.410 Sum_probs=33.2
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm 148 (705)
.++||.|.+-+..-+++.+.+..|+.. ..+. | ....|+-||++|||||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 366777766665556666666556554 2332 2 2345888999999999865
No 313
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.64 E-value=86 Score=33.16 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy11229 431 ISELKKKL 438 (705)
Q Consensus 431 i~~Lk~~l 438 (705)
|-.+-..|
T Consensus 131 Lc~IIqeL 138 (269)
T PF05278_consen 131 LCDIIQEL 138 (269)
T ss_pred HHHHHHHH
Confidence 34444444
No 314
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.57 E-value=1.5e+02 Score=31.96 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAE-RIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e-~~~~e~~~~~l~~e~~~~~~~l 567 (705)
.+.|...++..+.|...+++-++- ...|..++..|+.|...+...|
T Consensus 83 lKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 83 LKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333332222 1234445555544444444333
No 315
>KOG0612|consensus
Probab=71.40 E-value=1.7e+02 Score=37.04 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=12.8
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|.-|-|+..-..+|||-|.|
T Consensus 85 rGaFGEV~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 85 RGAFGEVALVRHKSTEKVYAM 105 (1317)
T ss_pred ccccceeEEEEeeccccchhH
Confidence 466666666666666666665
No 316
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=71.39 E-value=1.2e+02 Score=32.60 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~ 565 (705)
+...+++.+..|.+.++.-.+
T Consensus 237 ~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 237 QERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555554444433
No 317
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.17 E-value=1.8e+02 Score=32.68 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceeec
Q psy11229 595 FLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELK 641 (705)
Q Consensus 595 ~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~ 641 (705)
....+..|+|++.....+.+.|.-.-+..+|.... +...|++=
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~----~~~~~~Vi 382 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQS----NQTDISIL 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCceEee
Confidence 34467788889888888888888776666665432 44566653
No 318
>KOG0288|consensus
Probab=71.11 E-value=59 Score=36.20 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEE 559 (705)
Q Consensus 530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e 559 (705)
...+.+...++.+|.++..|++....+.+|
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555544444444444444
No 319
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=70.92 E-value=4.9 Score=48.77 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
.+..+.+|.|+.|.| +||||||-+
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHH
Confidence 355667999998876 999999976
No 320
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.92 E-value=2.7 Score=43.73 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=19.1
Q ss_pred HHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
...+....+.++-+|++|+|||+++.
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 33344446678889999999998763
No 321
>KOG3647|consensus
Probab=70.90 E-value=70 Score=33.55 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF 595 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~ 595 (705)
.+.+..+|.....+...|+.++....-|.+..+++|.++++.-=+...|-.+-.++.+...+-+
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555566666666666666666666555544444444444444444333333
No 322
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=70.79 E-value=4.5 Score=45.86 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=30.6
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHH-hhC--CC--CEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDK-VLS--GF--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~-vl~--G~--N~tIfaYGqTgSGKT~Tm 148 (705)
-+|+.|.+-+..-+++.+.+..|+... ++. |. ...|+-||++|||||++.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 356666655555556666665565532 222 21 124677999999999876
No 323
>KOG0978|consensus
Probab=70.67 E-value=1.6e+02 Score=35.47 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGG---ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDM 549 (705)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~---~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~ 549 (705)
.....++..+......+..++..++.++.... ..+..........++.......+..+....|+..+..-+..+.++
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
+..|..+..+++....+.+++..++..++..+.++
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 324
>PRK00846 hypothetical protein; Provisional
Probab=70.40 E-value=44 Score=28.59 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 538 NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 538 ~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
.|.+.+....-.+..+..|.+.+....+.|.++..++..+...+++
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444433
No 325
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.03 E-value=1.8 Score=41.97 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=14.7
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++....|...+++-+|.+|+|||+.+
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33344566788999999999999876
No 326
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=69.99 E-value=2 Score=38.80 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999865
No 327
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.93 E-value=1.3e+02 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQ 610 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~ 610 (705)
....+|..+..|+..+...++.+.-.+...++..+-.+.-..
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777788888888888888888888777665554333
No 328
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=69.88 E-value=3.8 Score=45.31 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=38.3
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhC----CCCEEEEEeccCCCCccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLS----GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~----G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++.||.+.+.-.--..+.+.++..++..++. -.---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 356788888776666667777777777777764 22335777999999999863
No 329
>PRK04406 hypothetical protein; Provisional
Probab=69.82 E-value=42 Score=28.46 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
.|.+.+...+.+++.++++++.
T Consensus 29 ~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 29 ELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 330
>KOG0727|consensus
Probab=69.82 E-value=3.5 Score=42.88 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=46.0
Q ss_pred eceeeCCCCChHHHHHhhhhhHHHHhhC---CCC--EEEEEeccCCCCcccccc--------------ccCCCCCCCCch
Q psy11229 101 FDTVFDANSKQLDIYNETARPIVDKVLS---GFN--GTIFAYGQTGTGKTFTME--------------GVNNVPELKGII 161 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~---G~N--~tIfaYGqTgSGKT~Tm~--------------G~~~~~~~~GIi 161 (705)
+..|=+-+..-++|-+.+-.||...-|- |.. -.|+.||+.|+|||-..- |+.-..-..|==
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 3445455555566766666676654331 332 258899999999985432 211101123666
Q ss_pred HHHHHHHHHhhhhcC
Q psy11229 162 PNSFAHIFGHIAKAD 176 (705)
Q Consensus 162 pr~~~~lF~~i~~~~ 176 (705)
||.+.++|.......
T Consensus 234 prmvrdvfrlakena 248 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENA 248 (408)
T ss_pred cHHHHHHHHHHhccC
Confidence 999999998766543
No 331
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=69.49 E-value=2.5 Score=42.29 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=16.7
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
|..++..-. ..+..|+.|||||+|+..
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 344443222 566799999999998753
No 332
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.33 E-value=1.5e+02 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~ 569 (705)
+...|..+..|++.++...++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~ 74 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQ 74 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 333
>KOG0962|consensus
Probab=69.30 E-value=82 Score=40.17 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 563 LSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV 599 (705)
Q Consensus 563 ~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~ 599 (705)
+...+.++..++.....++.++++.+......+.+.+
T Consensus 883 le~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~ 919 (1294)
T KOG0962|consen 883 LEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQ 919 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHH
Confidence 3333444444444444444444444444433333333
No 334
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.04 E-value=65 Score=27.55 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~ 572 (705)
+.++++.|.+...|.+..+.....+..++.+...|++|...-+.+|+.+.-
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555554443
No 335
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=68.99 E-value=1e+02 Score=28.90 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q psy11229 487 QSMVEKLELLQK 498 (705)
Q Consensus 487 ~~l~~k~~~l~~ 498 (705)
+.|..+|+.++.
T Consensus 9 E~LInrInelQQ 20 (134)
T PF15233_consen 9 EDLINRINELQQ 20 (134)
T ss_pred HHHHHHHHHHHH
Confidence 456666666654
No 336
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.97 E-value=2.4e+02 Score=33.18 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11229 425 IKYQKEISELKKKLEE 440 (705)
Q Consensus 425 ~~~~~ei~~Lk~~l~~ 440 (705)
+++.++|.+|..+..+
T Consensus 21 k~~~k~i~~Le~~k~~ 36 (560)
T PF06160_consen 21 KRYYKEIDELEERKNE 36 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666654433
No 337
>KOG4657|consensus
Probab=68.82 E-value=1.5e+02 Score=30.58 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 538 NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573 (705)
Q Consensus 538 ~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~ 573 (705)
-++++++....++..+..+|+|++.+++.+..+..+
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE 115 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEE 115 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666555443333
No 338
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=68.74 E-value=3.1 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.0
Q ss_pred CCC-CEEEEEeccCCCCcccccc
Q psy11229 128 SGF-NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 128 ~G~-N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4566779999999999874
No 339
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.72 E-value=29 Score=28.83 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.+..+..|.+.+-..+++|.++...+..+...+.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 340
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.70 E-value=1.7e+02 Score=31.36 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK----YSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590 (705)
Q Consensus 515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~----~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~ 590 (705)
...|.++..+.++...-...++-.++....+-.-+..+ +++|++..+.+..+|-+...+...++.++.......+.
T Consensus 97 rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrE 176 (305)
T PF14915_consen 97 RSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALRE 176 (305)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666667777777777766666665 45788888999999999888888888888876655443
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 591 EIEGFLDNVRQITKE 605 (705)
Q Consensus 591 e~e~~~~~~~~~~~e 605 (705)
--=.+....|.+...
T Consensus 177 KtL~lE~~QrdL~Qt 191 (305)
T PF14915_consen 177 KTLALESVQRDLSQT 191 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444555544
No 341
>PRK02119 hypothetical protein; Provisional
Probab=68.62 E-value=37 Score=28.61 Aligned_cols=9 Identities=11% Similarity=-0.071 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy11229 557 QEESEGLSK 565 (705)
Q Consensus 557 ~~e~~~~~~ 565 (705)
+.+++.+++
T Consensus 36 q~~id~L~~ 44 (73)
T PRK02119 36 QFVIDKMQV 44 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 342
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.59 E-value=57 Score=37.13 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el 606 (705)
+.++..+...+.+|.++|
T Consensus 122 ~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455554444
No 343
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.48 E-value=2.3e+02 Score=32.67 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 564 SKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT 603 (705)
Q Consensus 564 ~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~ 603 (705)
..-|+=+...|...+..+.++..+..+++-.|..+|+.|.
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666666666666665553
No 344
>PRK09343 prefoldin subunit beta; Provisional
Probab=68.40 E-value=1e+02 Score=28.58 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
+++++..+..++..++++.+.+...+...+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 345
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.39 E-value=2.8e+02 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy11229 423 LLIKYQKEISELKKKLEE 440 (705)
Q Consensus 423 ~l~~~~~ei~~Lk~~l~~ 440 (705)
.+..+-+++.+++++|+.
T Consensus 73 ~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 73 VIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 344455556666666653
No 346
>KOG4005|consensus
Probab=68.38 E-value=1.2e+02 Score=31.29 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEER 581 (705)
Q Consensus 529 ~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~ 581 (705)
|.+.++|+..+.+..++...|..+..+|+...+.+--+-.++...+....+++
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444555555555444444444444444444443333333333333333333
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=68.06 E-value=3.1 Score=45.32 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.0
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++-.++.+. +.|+-.|.||||||.++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3344444444 77899999999999886
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=67.98 E-value=1.9 Score=38.80 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.5
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|+-||++|+|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999887
No 349
>KOG4807|consensus
Probab=67.83 E-value=2e+02 Score=31.85 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNV 599 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~ 599 (705)
+.++.-+.+.+++|.+|+....+.-+-...+|+++=.|+.-.......++..+.+.+
T Consensus 518 EsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqL 574 (593)
T KOG4807|consen 518 ESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQL 574 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHH
Confidence 344444444455555554443333333333444444444433333334444443333
No 350
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=67.73 E-value=9.3 Score=42.15 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=25.4
Q ss_pred ec-eeeCCCCChHHHHHhhhhhHHHHhhCC---CCEEEEEeccCCCCcccc
Q psy11229 101 FD-TVFDANSKQLDIYNETARPIVDKVLSG---FNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 101 FD-~Vf~~~~tQ~~Vy~~~~~plV~~vl~G---~N~tIfaYGqTgSGKT~T 147 (705)
|| .||+. ++.-+.++.- +.....| -+-.+.-.|++|||||..
T Consensus 49 F~~~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 49 FDHDFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred cchhccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 44 67764 4444444432 3333333 456688999999999954
No 351
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=67.68 E-value=2.4e+02 Score=32.73 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQI---TKEYSYQQAIIQKF 616 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~---~~el~l~~~ii~~f 616 (705)
....+++++..+..+|..+..++++.+.+.....+.++.....+...+... +-++.+++.-+.++
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~ 349 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHY 349 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333333333333333333222 33444444444443
No 352
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.50 E-value=3e+02 Score=33.72 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQ 610 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~ 610 (705)
+..+..|.++.......+..++..|.....|...+.-+..---++| .||..+|++..+.
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel--eir~~E~~~~~~~ 177 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL--EIRNEEREYSRRA 177 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHH
Confidence 3344445555555555556666666666666666655554444444 3555555554443
No 353
>KOG4657|consensus
Probab=67.47 E-value=1.5e+02 Score=30.39 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e 587 (705)
....+.+++..++.+|+.+...++-.+.|..|..+-
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~kei 122 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEI 122 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334455666666666666666666666665554433
No 354
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.39 E-value=1e+02 Score=28.25 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 563 LSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 563 ~~~~l~~~~~~l~~~~~e~~ 582 (705)
+...|+++...+..++.++.
T Consensus 79 k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333
No 355
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.32 E-value=38 Score=34.10 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy11229 478 ELKRAQSDHQSMVEKLELLQKKVL 501 (705)
Q Consensus 478 ~~~~~~~~~~~l~~k~~~l~~~~~ 501 (705)
|.-+++.++..|.+++...++...
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777766543
No 356
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.13 E-value=23 Score=40.21 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.2
Q ss_pred cchhhhccC
Q psy11229 670 FSHLYRYYP 678 (705)
Q Consensus 670 ~~~~~~~~~ 678 (705)
+..+-+.|.
T Consensus 195 ~~~~~f~~~ 203 (475)
T PRK13729 195 IQRKTFTYN 203 (475)
T ss_pred eeEEEeecc
Confidence 444444554
No 357
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.00 E-value=3.6 Score=39.48 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.1
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
..++..|.||||||.++..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 25 RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CcEEEECCCCCchhHHHHH
Confidence 3456789999999998754
No 358
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=66.92 E-value=2.3 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.5
Q ss_pred CCEEEEEeccCCCCccccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 677888889999999999853
No 359
>KOG0018|consensus
Probab=66.82 E-value=2.6e+02 Score=35.03 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=10.5
Q ss_pred eccCCCCccccc
Q psy11229 137 YGQTGTGKTFTM 148 (705)
Q Consensus 137 YGqTgSGKT~Tm 148 (705)
.|+.||||+-.|
T Consensus 31 IGPNGSGKSNlM 42 (1141)
T KOG0018|consen 31 IGPNGSGKSNLM 42 (1141)
T ss_pred eCCCCCchHHHH
Confidence 599999999877
No 360
>KOG0926|consensus
Probab=66.65 E-value=4 Score=48.66 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.1
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3557888999999999876
No 361
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.54 E-value=79 Score=36.42 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQ 614 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~ 614 (705)
+...+..++...+++.+.+...|+.....+..+++|+.-...-++.++..+-+.+-.++..|.-+..-|+
T Consensus 442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444444444444444444444444444
No 362
>KOG4807|consensus
Probab=66.38 E-value=2.2e+02 Score=31.64 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy11229 424 LIKYQKEISELKKKLEEA 441 (705)
Q Consensus 424 l~~~~~ei~~Lk~~l~~~ 441 (705)
+..+.++|..|+.+|+..
T Consensus 293 ~~~L~k~vQ~L~AQle~~ 310 (593)
T KOG4807|consen 293 HEALEKEVQALRAQLEAW 310 (593)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777888888877643
No 363
>KOG0972|consensus
Probab=66.34 E-value=1.9e+02 Score=30.93 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 540 QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN-----RKEIEGFLDNVRQITKEYSYQQAIIQ 614 (705)
Q Consensus 540 ~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~-----~~e~e~~~~~~~~~~~el~l~~~ii~ 614 (705)
.+...++..+.++|..++.-+...++.|..++.++...|+|+.+.=... -..+......+++-..++.+.-.|++
T Consensus 283 r~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~e 362 (384)
T KOG0972|consen 283 RRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFE 362 (384)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhh
Confidence 3445566778889999999899999999999999988888877532111 11233333333444444444444454
Q ss_pred hcCChHH
Q psy11229 615 KFIPTKY 621 (705)
Q Consensus 615 ~fiP~~~ 621 (705)
+-+-..+
T Consensus 363 hs~lq~~ 369 (384)
T KOG0972|consen 363 HSILQTY 369 (384)
T ss_pred HHHHHHH
Confidence 4444333
No 364
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=66.31 E-value=3.6 Score=40.76 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=19.6
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.+++...+.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444444443 3456778999999998873
No 365
>KOG3647|consensus
Probab=66.11 E-value=1.8e+02 Score=30.66 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE-------ESEGLSKKLKKVSSML 574 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~-------e~~~~~~~l~~~~~~l 574 (705)
...|......+..|..+|+....|.....+++..||. |-+.-+++|+++++-|
T Consensus 125 ~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 125 RAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555542 3444444555544443
No 366
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=66.07 E-value=3 Score=45.42 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=19.3
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++..++.+. +.|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3344444432 347889999999999883
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.96 E-value=5.8 Score=44.27 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.7
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999983
No 368
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.92 E-value=1.5e+02 Score=29.81 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 546 ~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
+..+..+++.++.+++...+++..+..++.-.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444333
No 369
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=65.24 E-value=3.5 Score=41.91 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=14.1
Q ss_pred CCEEEEEeccCCCCcccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 44579999999999998753
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.17 E-value=6.4 Score=41.91 Aligned_cols=19 Identities=47% Similarity=0.629 Sum_probs=15.3
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
..|.-.|+||+|||+|+..
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3566779999999999853
No 371
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=6.8 Score=42.91 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=48.4
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHH-HhhC--CCC--EEEEEeccCCCCccccc--------------cccCCCCCCCCc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVD-KVLS--GFN--GTIFAYGQTGTGKTFTM--------------EGVNNVPELKGI 160 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~N--~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~GI 160 (705)
+|+.|=+-+..-++|.+.+-.||.+ ..|+ |.. -.|+-||+.|||||-.- .|+.-..-.-|=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 4555555555557788888788774 3444 553 25889999999999542 222100001244
Q ss_pred hHHHHHHHHHhhhhcC
Q psy11229 161 IPNSFAHIFGHIAKAD 176 (705)
Q Consensus 161 ipr~~~~lF~~i~~~~ 176 (705)
=+|.+.+||.......
T Consensus 229 GaRlVRelF~lAreka 244 (406)
T COG1222 229 GARLVRELFELAREKA 244 (406)
T ss_pred chHHHHHHHHHHhhcC
Confidence 4799999998776654
No 372
>PRK04406 hypothetical protein; Provisional
Probab=65.00 E-value=61 Score=27.53 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE 580 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e 580 (705)
+...+...|....-.+..+..|.+.+-..++.|..+..++..+...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555444444444444444444333
No 373
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=64.85 E-value=3.2 Score=40.84 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57889999999999975
No 374
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.74 E-value=3 Score=43.73 Aligned_cols=16 Identities=44% Similarity=0.818 Sum_probs=13.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
+|+-||++|+|||++-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 6788999999999764
No 375
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.72 E-value=1.2e+02 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
++++...|.-.+..+++.-+++..++..+++++.+
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 376
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.36 E-value=1.5e+02 Score=28.99 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 541 EKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 541 ~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
..+.+..++..++..|++++..+..+++.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445556666677777766555555543
No 377
>KOG4460|consensus
Probab=64.16 E-value=86 Score=36.16 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~ 572 (705)
++++++..++....++++|....+.-+.+.++++++++
T Consensus 607 ~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 607 CREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333333333444455555544444555555555444
No 378
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.82 E-value=2.7e+02 Score=31.90 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQ 497 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~ 497 (705)
+.++..++.++.....++....
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 379
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=63.81 E-value=2.7 Score=42.07 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999884
No 380
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=63.75 E-value=73 Score=34.76 Aligned_cols=7 Identities=29% Similarity=1.013 Sum_probs=4.0
Q ss_pred HHhcCCh
Q psy11229 613 IQKFIPT 619 (705)
Q Consensus 613 i~~fiP~ 619 (705)
++.|.|.
T Consensus 87 mEa~LPk 93 (330)
T PF07851_consen 87 MEAFLPK 93 (330)
T ss_pred HHhhCCC
Confidence 4566664
No 381
>PRK11519 tyrosine kinase; Provisional
Probab=63.63 E-value=2.4e+02 Score=34.29 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
++++..++.+++....+++..+.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 382
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.61 E-value=1.6e+02 Score=29.31 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e 593 (705)
+.+.+......++.|+..|.++...+..+..|+..-..+++.+.+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444433
No 383
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.57 E-value=1.7e+02 Score=29.60 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 592 IEGFLDNVRQITKE 605 (705)
Q Consensus 592 ~e~~~~~~~~~~~e 605 (705)
++.+.+.|..++.+
T Consensus 167 ~er~e~ki~~~ea~ 180 (221)
T PF04012_consen 167 FERMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 384
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=63.54 E-value=3.3 Score=38.49 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.8
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999864
No 385
>PF13514 AAA_27: AAA domain
Probab=63.42 E-value=2.8e+02 Score=35.50 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ-----RENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~-----~e~~~e~e~~~~~~~~~~~e 605 (705)
.++..+..++.+++.+..++..+...+..++.++..+. .+...+++.+...++.+.++
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~ 955 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEE 955 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666555555555555555442 23444555565555555544
No 386
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=63.15 E-value=6.2 Score=42.09 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=24.8
Q ss_pred HhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 116 NETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 116 ~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
...+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 44456776 556666788999999999999876
No 387
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=62.94 E-value=3.2 Score=45.58 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=19.5
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.++..++. ..+.|+..|.||||||++|..
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 34444443 234477899999999998843
No 388
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=62.93 E-value=3.8 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=18.9
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++..++.+. +.|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 3444444432 347779999999999883
No 389
>KOG2751|consensus
Probab=62.88 E-value=2.7e+02 Score=31.47 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~ 576 (705)
+...++++.+..+++|-+++++.+++..++...+..++.+.+.+..+-...|+++..
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~ 236 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNN 236 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666777777887777777777777777777776666655555555443
No 390
>PRK11519 tyrosine kinase; Provisional
Probab=62.84 E-value=1.4e+02 Score=36.21 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccCceeecc
Q psy11229 592 IEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKC 642 (705)
Q Consensus 592 ~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~~wdee~~~W~l~~ 642 (705)
.-+.+.++.+|+|+....+.+-+.+.-.-+...|..... ...|++=.
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~----~~~~rIid 411 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEAST----VGDVRIVD 411 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCC----CCCeEEEe
Confidence 334456777888888888888877776555555554332 34677643
No 391
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=62.71 E-value=2.9e+02 Score=31.92 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=8.8
Q ss_pred HHHHHhhcccccccCceee
Q psy11229 622 LELMTQNATWNEDIGEWEL 640 (705)
Q Consensus 622 ~~ki~~~~~wdee~~~W~l 640 (705)
+..|..|..| +..+....
T Consensus 393 ~~~Ir~r~~~-~~~~~~va 410 (489)
T PF05262_consen 393 VNGIRGRTFY-EREDDLVA 410 (489)
T ss_pred cceeccceeE-EcCCCEEE
Confidence 5555555555 33333333
No 392
>PRK10536 hypothetical protein; Provisional
Probab=62.66 E-value=4.2 Score=42.76 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=28.7
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|.|..+-+-+..|..... .+.+ +..++..|.+||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4666667776666654433 2233 3488999999999999763
No 393
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.65 E-value=68 Score=31.98 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
....+.+|++.++++|++....+..++.+.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333344344333333
No 394
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=62.62 E-value=62 Score=32.09 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 585 QRENRKEIEGFLDNVRQITKEYSYQ 609 (705)
Q Consensus 585 ~~e~~~e~e~~~~~~~~~~~el~l~ 609 (705)
.-.|++|+|++...+..|+..++-.
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999888888776653
No 395
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.47 E-value=3.1 Score=38.72 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.6
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 396
>PRK06547 hypothetical protein; Provisional
Probab=62.08 E-value=6.4 Score=38.73 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=19.4
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++..+..+.---|..+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444555555556777799999999864
No 397
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=62.03 E-value=3e+02 Score=31.75 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 578 KEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 578 ~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
++.+..+..=++..++.+...+.+..++
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666655543
No 398
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.83 E-value=94 Score=28.08 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSL--QEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l--~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
+.+.+...+.....+|.++..| +++++.+...+.++.-.+..+...+.-+
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444455555555 5555555555555544444444444443
No 399
>PRK13764 ATPase; Provisional
Probab=61.77 E-value=4.1 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.7
Q ss_pred CCCEEEEEeccCCCCccccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.....|+..|+||||||+++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3445589999999999999843
No 400
>PRK14161 heat shock protein GrpE; Provisional
Probab=61.63 E-value=1e+02 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG 594 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~ 594 (705)
++-+.+++++++.+++++..+..++..+.++.........+++++
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 401
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=61.45 E-value=3.5e+02 Score=32.37 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11229 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615 (705)
Q Consensus 574 l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~ 615 (705)
++..-..+.++....+...+.+.+.+.-+..+|.-+..-++-
T Consensus 354 ~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleE 395 (786)
T PF05483_consen 354 LQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEE 395 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Confidence 333334444444444445555566666666666555544443
No 402
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.44 E-value=1.8e+02 Score=29.17 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 539 IQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587 (705)
Q Consensus 539 l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e 587 (705)
..+.+.++..++.++..|+++...+..+-.....++..++.+...+.++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555444444444444455555554444443
No 403
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.98 E-value=50 Score=27.42 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
|+..+.-.+.-+..|.+.+...+.+++.+++.++.+..++.++.
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333344444444444444444445555554444444443
No 404
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=60.97 E-value=5.6 Score=39.38 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=16.9
Q ss_pred HHhhCCCCEEEEEeccCCCCcccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+.++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44445777 57789999999987
No 405
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=60.93 E-value=8 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=15.7
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
....++-||++|||||++.
T Consensus 41 ~~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred CcceEEEEcCCCCCHHHHH
Confidence 3456788999999999986
No 406
>KOG3850|consensus
Probab=60.91 E-value=2.7e+02 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11229 472 EDETDAELKRAQSDHQSMVEKLELLQKKVL 501 (705)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~ 501 (705)
.+...++|..+++....|.+.++.|+..+.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~k 291 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIK 291 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888876543
No 407
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=60.77 E-value=3.6e+02 Score=32.34 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV-------------QR 586 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~-------------~~ 586 (705)
+...++.....+.+.|...|+..+..+...-..+...+.|.+.+.+.|.+....+..-..-+..+ -.
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~ 238 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQ 238 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccH
Confidence 33455555555666666666666655555555566666666666666665555544432222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11229 587 ENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 587 e~~~e~e~~~~~~~~~~~e 605 (705)
.+..|++.+.+++..|.++
T Consensus 239 ~we~Er~~L~~tVq~L~ed 257 (739)
T PF07111_consen 239 AWEPEREELLETVQHLQED 257 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766
No 408
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.77 E-value=1.3e+02 Score=36.55 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy11229 594 GFLDNVRQITKEYSYQQAIIQKFIPTKYLELMT 626 (705)
Q Consensus 594 ~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~ 626 (705)
+.+.++.+|+|+.+..+.+.+.+.-..+...|.
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777666665544433444
No 409
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=60.75 E-value=1.1e+02 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11229 559 ESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 559 e~~~~~~~l~~~~~~l~ 575 (705)
.++.++.+|..+...+.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34445555555555555
No 410
>PRK04325 hypothetical protein; Provisional
Probab=60.71 E-value=69 Score=27.06 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy11229 557 QEESEGLS 564 (705)
Q Consensus 557 ~~e~~~~~ 564 (705)
+.+++.++
T Consensus 36 q~~I~~L~ 43 (74)
T PRK04325 36 QQTLDLLQ 43 (74)
T ss_pred HHHHHHHH
Confidence 33333333
No 411
>PRK02119 hypothetical protein; Provisional
Probab=60.60 E-value=75 Score=26.80 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 538 NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEER 581 (705)
Q Consensus 538 ~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~ 581 (705)
.+...|....-.+..+..|.+.+-..++.|..+...+..+...+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444443333
No 412
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=60.60 E-value=4.6 Score=46.57 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=30.2
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm~ 149 (705)
...+||.|.+.+.....+.+. +..+-. ..+. | ..-.|+-||++|||||+...
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~-~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEI-VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 357888888766554444432 222111 0111 1 22357889999999999863
No 413
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=60.59 E-value=2.1e+02 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 568 KKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 568 ~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
.+....|.....++.+....+..++....+...+++.+
T Consensus 167 ~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~ 204 (236)
T cd07651 167 NSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEE 204 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777778888888888888888777
No 414
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.48 E-value=2.5e+02 Score=34.16 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy11229 476 DAELKRAQSDHQSMVEKLELLQK 498 (705)
Q Consensus 476 ~~~~~~~~~~~~~l~~k~~~l~~ 498 (705)
++++..++.++......++...+
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444
No 415
>PRK00846 hypothetical protein; Provisional
Probab=60.48 E-value=70 Score=27.38 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
+|+..+.-++.-+..|.+.+...+..++.++++++.+..+++++.
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444455555555555555544443
No 416
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=60.45 E-value=14 Score=36.25 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 536 KKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEER 581 (705)
Q Consensus 536 ~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~ 581 (705)
+..+.+.-+....||..+ +|.+.|..++.+|..++.+++.|+
T Consensus 6 EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 6 ESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444 233333333334444444444444
No 417
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=60.40 E-value=5 Score=37.59 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+--.|.||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 4556799999999974
No 418
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.37 E-value=71 Score=26.85 Aligned_cols=20 Identities=15% Similarity=0.234 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLK 568 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~ 568 (705)
|.+.+...+.+++.++++++
T Consensus 27 Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 27 LNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 419
>PTZ00424 helicase 45; Provisional
Probab=60.37 E-value=5.1 Score=44.41 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=19.8
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345567789985 46789999999764
No 420
>PRK14160 heat shock protein GrpE; Provisional
Probab=60.32 E-value=1.3e+02 Score=30.77 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 560 SEGLSKKLKKVSSMLLAAKEERKDVQRENRKEI 592 (705)
Q Consensus 560 ~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~ 592 (705)
++.+.+++..+...+..+.++.........+++
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~ 102 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTAKEK 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 421
>KOG0163|consensus
Probab=60.15 E-value=3.8e+02 Score=32.45 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.1
Q ss_pred CCCEEEEEeccCCCCcccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~T 147 (705)
-.+-+|+.-|.+|+|||-+
T Consensus 142 k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hhcccEEEecCCCCCcchh
Confidence 3456789999999999954
No 422
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=60.12 E-value=3.8 Score=45.05 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=30.4
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|.|+.|-+ |+++= .-|+..+.+-.-+.|+-+|.+|||||+.+-
T Consensus 12 ~~~pf~~ivG----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVG----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhC----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 3688988886 43333 334444444333568899999999999873
No 423
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=60.06 E-value=10 Score=39.14 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=26.7
Q ss_pred eCCCCChHHHHHhhhhhHHHHhhC-C-CCEEEEEeccCCCCcccc
Q psy11229 105 FDANSKQLDIYNETARPIVDKVLS-G-FNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 105 f~~~~tQ~~Vy~~~~~plV~~vl~-G-~N~tIfaYGqTgSGKT~T 147 (705)
|++-..|+.|-.. ...++..+.. | .-..++-||+.|+|||..
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3444568888866 4677777654 2 334677899999999854
No 424
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.98 E-value=5.3 Score=45.41 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=18.3
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445668887 67788999999975
No 425
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.66 E-value=2.4e+02 Score=29.97 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el 606 (705)
..-+..+...|.-+++.|
T Consensus 144 DkGiQKYFvDINiQN~KL 161 (305)
T PF15290_consen 144 DKGIQKYFVDINIQNKKL 161 (305)
T ss_pred hhhHHHHHhhhhhhHhHH
Confidence 334444445555555544
No 426
>KOG4005|consensus
Probab=59.53 E-value=1.1e+02 Score=31.60 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~ 565 (705)
+.++.+|++.-..|+-|.+.++.
T Consensus 96 e~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 96 EYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 427
>PF14182 YgaB: YgaB-like protein
Probab=59.38 E-value=1e+02 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601 (705)
Q Consensus 566 ~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~ 601 (705)
++..+..++...+.++++++.-|+.+.++....++.
T Consensus 41 ~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~~ 76 (79)
T PF14182_consen 41 ELHSIQEEISQMKKELKEIQRVFEKQTEEVIRSYQS 76 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666777777777766665544
No 428
>KOG0249|consensus
Probab=59.33 E-value=2.1e+02 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy11229 421 DALLIKYQKEISELKKKL 438 (705)
Q Consensus 421 ~~~l~~~~~ei~~Lk~~l 438 (705)
++.++...+....|...|
T Consensus 104 da~lrq~eekn~slqerL 121 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERL 121 (916)
T ss_pred chhhchhHHhhhhhhHHH
Confidence 444444444444444444
No 429
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=59.30 E-value=4.4 Score=40.54 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=14.5
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
.-..+|..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3457899999999999876
No 430
>KOG0946|consensus
Probab=59.27 E-value=4.1e+02 Score=32.47 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~ 568 (705)
...+|+.+.++.+++..+.....+.+.++.+.++-+|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333333334444444444443
No 431
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=59.27 E-value=1.3e+02 Score=26.58 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
++..+..++.+++.+...+......+.....+.+-+..
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 432
>KOG1103|consensus
Probab=59.22 E-value=1.8e+02 Score=31.75 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=11.3
Q ss_pred HhhhhHHHHHHHHHHHhc
Q psy11229 336 KINLSLSTLGNVISALVD 353 (705)
Q Consensus 336 ~IN~SL~aL~~vI~aL~~ 353 (705)
+||--|.+|.+=...|.+
T Consensus 56 NinDP~~ALqRDf~~l~E 73 (561)
T KOG1103|consen 56 NINDPFAALQRDFAILGE 73 (561)
T ss_pred ccCChHHHHHHHHHHHhc
Confidence 356667777776666643
No 433
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=58.96 E-value=4 Score=36.84 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=13.1
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677999999999865
No 434
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.78 E-value=70 Score=33.76 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
|++.+...-.-..+|..++..|+.|+..|+..++.+..++..+++..+|+
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333344455666777777777666666666666666555554444
No 435
>KOG0979|consensus
Probab=58.78 E-value=4.6e+02 Score=32.86 Aligned_cols=6 Identities=50% Similarity=0.827 Sum_probs=3.7
Q ss_pred EEEEEE
Q psy11229 185 VSYFEI 190 (705)
Q Consensus 185 vS~~EI 190 (705)
.+|+||
T Consensus 89 ~g~IEI 94 (1072)
T KOG0979|consen 89 EGYIEI 94 (1072)
T ss_pred cceEEE
Confidence 456666
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.63 E-value=5.5 Score=44.75 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=24.0
Q ss_pred ChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 110 KQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 110 tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|+.+... ..++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 34444432 2234433445555567779999999998763
No 437
>KOG0962|consensus
Probab=58.39 E-value=5.2e+02 Score=33.41 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 544 AERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589 (705)
Q Consensus 544 ~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~ 589 (705)
+....+++.+..+++++..+..+++.+.+.+...+.++...+++..
T Consensus 878 ~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e 923 (1294)
T KOG0962|consen 878 ARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKE 923 (1294)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHH
Confidence 3445566677777777777766766666655555555444444333
No 438
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.25 E-value=81 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
|....-.+..+..|.+.+-..++.|..+..++..+
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333333333
No 439
>PLN03025 replication factor C subunit; Provisional
Probab=58.24 E-value=7.5 Score=42.03 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=16.6
Q ss_pred CCCEEEEEeccCCCCccccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
|.-..++-||++|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4333466799999999998854
No 440
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=58.24 E-value=6.8 Score=41.74 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=23.8
Q ss_pred CChHHHHHhhhhhHHHHhhC--CCCEEEEEeccCCCCcccccc
Q psy11229 109 SKQLDIYNETARPIVDKVLS--GFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 109 ~tQ~~Vy~~~~~plV~~vl~--G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|+++.+.+ ..++..... +....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3466666553 334433222 222346779999999998763
No 441
>PTZ00121 MAEBL; Provisional
Probab=58.14 E-value=5.5e+02 Score=33.65 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=11.9
Q ss_pred EccceEEEcCCHHHHHHHHH
Q psy11229 232 VKDLSAYIANNADDMEKIMS 251 (705)
Q Consensus 232 v~~l~~~~v~s~~e~~~ll~ 251 (705)
|.....+.+.++.++.++|-
T Consensus 935 i~k~~~~~~~~f~eC~e~lF 954 (2084)
T PTZ00121 935 IDEANEVGINKFGGCLEYLF 954 (2084)
T ss_pred ccccccccchhHHHHHHHHH
Confidence 33444555666777776665
No 442
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=58.08 E-value=8.4 Score=42.97 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=26.2
Q ss_pred hHHHHHhhhhhHHHHhhCC----CCEEEEEeccCCCCcccccc
Q psy11229 111 QLDIYNETARPIVDKVLSG----FNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 111 Q~~Vy~~~~~plV~~vl~G----~N~tIfaYGqTgSGKT~Tm~ 149 (705)
....|.....-++.++.+- ..+-|.-.|+||-|||.|+-
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3345555555555555554 26667778999999999984
No 443
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=58.08 E-value=5.6 Score=47.17 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=29.5
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
-+||.+++.+ .... .++..+..++...++-||++|||||+..
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4677777543 3333 2345556677878899999999999876
No 444
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=57.86 E-value=6.4 Score=45.65 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=22.7
Q ss_pred hhhHHHHhhCCCC--EEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLSGFN--GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~G~N--~tIfaYGqTgSGKT~Tm 148 (705)
++..+...+.|.. ..++.+|++|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4556666665553 46788999999999997
No 445
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.79 E-value=2.4e+02 Score=29.40 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCCh-----HHHH
Q psy11229 557 QEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE--------YSYQQAIIQKFIPT-----KYLE 623 (705)
Q Consensus 557 ~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e--------l~l~~~ii~~fiP~-----~~~~ 623 (705)
..+++.+..++++..+.|++.-..+...+.++..++....+.+.+++.+ |.....+++...|. +++.
T Consensus 149 ~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~ 228 (261)
T cd07648 149 PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFK 228 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4566777778888888888888888888888888888888888777766 23333444555553 3455
Q ss_pred HHHhhcccccccCceeec
Q psy11229 624 LMTQNATWNEDIGEWELK 641 (705)
Q Consensus 624 ki~~~~~wdee~~~W~l~ 641 (705)
..-..+.-+.|...|.-.
T Consensus 229 ~~~~~id~~~Di~~fv~~ 246 (261)
T cd07648 229 RQVDELTVDKLLRQFVES 246 (261)
T ss_pred HHHHhCCHHHHHHHHHHc
Confidence 666677778888888754
No 446
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=57.77 E-value=3.6e+02 Score=31.41 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
...+|..++..+....+-+..|...+ ..+....+.....+..+.+...........|..+|.....+.......-.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~v----esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASV----ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT 603 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~ 603 (705)
...+....+...|..+..+...++.+....+.+...-+.++..+-..+.
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.66 E-value=4.7 Score=44.75 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=16.3
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
...+.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577889999999999984
No 448
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=57.65 E-value=6.6 Score=47.22 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=25.1
Q ss_pred HHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 113 ~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.||...-.-.-.-...|.|-||+..|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 455443222222223589999999999999999986
No 449
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.54 E-value=63 Score=37.92 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 547 IDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576 (705)
Q Consensus 547 ~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~ 576 (705)
....+++.++.++++.-.+.++...+.++.
T Consensus 229 ~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 229 KADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 333444444444444444444433333333
No 450
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.14 E-value=4.8e+02 Score=32.62 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=13.6
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
++..+-+|+||||||.-|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 445567899999999544
No 451
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=57.02 E-value=1.4e+02 Score=26.42 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG 594 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~ 594 (705)
.+..++...+.+.........++..|+ ++|..+..+-..+..++.++..++.+....
T Consensus 35 rl~~Ek~kadqkyfa~mr~~d~l~~e~----k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~ 91 (96)
T PF08647_consen 35 RLEAEKAKADQKYFAAMRSKDALDNEM----KKLNTQLSKSSELIEQLKETEKEFVRKLKN 91 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555554 333333444444455555555554444433
No 452
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.93 E-value=1.1e+02 Score=25.37 Aligned_cols=8 Identities=25% Similarity=0.352 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy11229 552 KYSSLQEE 559 (705)
Q Consensus 552 ~~~~l~~e 559 (705)
....++.|
T Consensus 29 q~~~~~~E 36 (65)
T TIGR02449 29 QEKTWREE 36 (65)
T ss_pred HHHHHHHH
Confidence 33333333
No 453
>PRK00736 hypothetical protein; Provisional
Probab=56.91 E-value=79 Score=26.24 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKV 570 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~ 570 (705)
.|.+.+...+.+++.++++++.+
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 454
>KOG2543|consensus
Probab=56.72 E-value=5.5 Score=43.95 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=28.2
Q ss_pred CCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhhcCCCceEEEEEEEEEEEc
Q psy11229 130 FNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYN 192 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~~~~~~~~~V~vS~~EIyn 192 (705)
+-+.|+-||.+||||||++- .+|+.... -.|+++++|-|.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r-----------------~~l~~~n~------~~vw~n~~ecft 68 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVR-----------------QLLRKLNL------ENVWLNCVECFT 68 (438)
T ss_pred cceeEEEeccCCCchhHHHH-----------------HHHhhcCC------cceeeehHHhcc
Confidence 34456999999999999863 45554421 247888888875
No 455
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=56.61 E-value=8.1 Score=41.16 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.7
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454455788999999999876
No 456
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=56.58 E-value=3.7e+02 Score=31.19 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 580 ERKDVQRENRKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 580 e~~d~~~e~~~e~e~~~~~~~~~~~el 606 (705)
|+.-..++..+.+..+.-.+.....|+
T Consensus 345 el~~~~ee~~~~~s~~~~k~~~ke~E~ 371 (511)
T PF09787_consen 345 ELYHYREELSRQKSPLQLKLKEKESEI 371 (511)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 333333333344444444444444444
No 457
>KOG1899|consensus
Probab=56.53 E-value=2.9e+02 Score=32.66 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy11229 427 YQKEISEL 434 (705)
Q Consensus 427 ~~~ei~~L 434 (705)
||+.+.+|
T Consensus 109 yQerLaRL 116 (861)
T KOG1899|consen 109 YQERLARL 116 (861)
T ss_pred HHHHHHHH
Confidence 44444443
No 458
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=56.48 E-value=1.9e+02 Score=31.94 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=10.2
Q ss_pred cCChHHHHHHHhhcc
Q psy11229 616 FIPTKYLELMTQNAT 630 (705)
Q Consensus 616 fiP~~~~~ki~~~~~ 630 (705)
.||++....|.....
T Consensus 118 lIP~~~~~~I~~~~~ 132 (378)
T TIGR01554 118 TIPEEIGTKIEKLVE 132 (378)
T ss_pred eCCHHHHHHHHHHHh
Confidence 688887776665544
No 459
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=56.47 E-value=6.7 Score=44.16 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=18.9
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..+++|.| +++.++||||||.+
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 455678887 78889999999986
No 460
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=56.24 E-value=2e+02 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEE 559 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e 559 (705)
.+|..+++..+++...++.+..++.+.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345555555555555555555444443
No 461
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.12 E-value=3.5e+02 Score=32.67 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 521 AAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 521 ~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
+++.|++....-..-+.++.+.......+..-+.+|+.--+.|...|..+.+++.
T Consensus 989 Lr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~ 1043 (1480)
T COG3096 989 LRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQ 1043 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344444333333344444555555555555566666555555554444444443
No 462
>KOG1899|consensus
Probab=56.06 E-value=2.8e+02 Score=32.70 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEG 562 (705)
Q Consensus 530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~ 562 (705)
....+|+-.+...|.+..+.|+++..-+..++.
T Consensus 181 aevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 181 AEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred HHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 344556666666666666666666554444433
No 463
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.99 E-value=3.6e+02 Score=30.78 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 546 ~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
..+++..+.+|++-....++.|..-+.+-..++-+++.+...+.+--|.+...+.+-.+-
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 334555666666666555555554444444444444444444433333343333333333
No 464
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=55.99 E-value=7.3 Score=44.25 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.8
Q ss_pred cCCCCcceeeEEeeCCCCCCHHHHHHHHHHHH
Q psy11229 373 SLGGNSKTVMCATVGPASYNYEETISTLRYAS 404 (705)
Q Consensus 373 sLgGnskt~mI~~isP~~~~~~ETlsTLrfa~ 404 (705)
.+.-..+..+|||++.++.. +..|.+|-
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHH
Confidence 34556889999999999864 34555554
No 465
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.96 E-value=1.2e+02 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 546 ~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
...+.++-.+|..|+...+...+.+..+..+++
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444444444444443333
No 466
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=55.94 E-value=3.7e+02 Score=30.92 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSK----KLKKVSSMLLAA----KEERKDVQRENRKEIEGFLDNVRQI 602 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~----~l~~~~~~l~~~----~~e~~d~~~e~~~e~e~~~~~~~~~ 602 (705)
+.|...|..-...|+.|....+. -++.+.+++.++ +.|..-+++|--.|.-++-..+-+-
T Consensus 157 ~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE~ 224 (508)
T PF00901_consen 157 KEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLEH 224 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHH
Confidence 34444455555555555433322 223333333333 3344445555555555555444443
No 467
>PRK04325 hypothetical protein; Provisional
Probab=55.73 E-value=95 Score=26.24 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
-.+..+..|.+.+-..++.|..+...+..+
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333333
No 468
>PRK00295 hypothetical protein; Provisional
Probab=55.45 E-value=97 Score=25.72 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
.+..+..|.+.+-..++.|..+..++..+
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333333333
No 469
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.39 E-value=2.7e+02 Score=30.58 Aligned_cols=38 Identities=3% Similarity=0.052 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhc
Q psy11229 592 IEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNA 629 (705)
Q Consensus 592 ~e~~~~~~~~~~~el~l~~~ii~~fiP~~~~~ki~~~~ 629 (705)
.-+....+.+|.++......+.+.+.-.-+..+++...
T Consensus 273 l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~ 310 (362)
T TIGR01010 273 LNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR 310 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567788888888888888887776666666443
No 470
>KOG2751|consensus
Probab=55.38 E-value=3.5e+02 Score=30.53 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=4.7
Q ss_pred ccCCCCcc
Q psy11229 359 IPYRNSKL 366 (705)
Q Consensus 359 VPyRdSkL 366 (705)
-|||++-+
T Consensus 84 ~p~r~~~~ 91 (447)
T KOG2751|consen 84 PPVRDSDT 91 (447)
T ss_pred Cccccccc
Confidence 47777543
No 471
>KOG0340|consensus
Probab=55.07 E-value=11 Score=41.10 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=23.9
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGV 151 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~ 151 (705)
..+|..+|+|.+| +....||||||..+-++
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 3457888999997 56778999999987663
No 472
>PRK00736 hypothetical protein; Provisional
Probab=55.05 E-value=94 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
-.+..+..|.+.+-...+.|..+..++..+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333
No 473
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=54.89 E-value=1.1e+02 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.6
Q ss_pred HHHHHHhcCCh------HHHHHHHhhc
Q psy11229 609 QQAIIQKFIPT------KYLELMTQNA 629 (705)
Q Consensus 609 ~~~ii~~fiP~------~~~~ki~~~~ 629 (705)
.-.+++.|+|. +++..+...+
T Consensus 49 rGa~lEsi~~e~~~lT~~E~~~ll~~~ 75 (86)
T PF12958_consen 49 RGAILESIFPEPKDLTNDEFYELLEFL 75 (86)
T ss_pred hhHHHHHHhhcchhcCHHHHHHHHHHH
Confidence 56778888882 4455544433
No 474
>PRK11281 hypothetical protein; Provisional
Probab=54.82 E-value=5.7e+02 Score=32.81 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy11229 424 LIKYQKEISELK 435 (705)
Q Consensus 424 l~~~~~ei~~Lk 435 (705)
+..|+.-+.-|.
T Consensus 62 ~~~l~~tL~~L~ 73 (1113)
T PRK11281 62 QQDLEQTLALLD 73 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 475
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.68 E-value=5.7 Score=42.88 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=14.4
Q ss_pred CEEEEEeccCCCCcccc
Q psy11229 131 NGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~T 147 (705)
-+.|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 45688999999999964
No 476
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.65 E-value=95 Score=32.36 Aligned_cols=33 Identities=9% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 537 KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 537 ~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
..+...+++...+..+|..++.+.+..+++..+
T Consensus 74 ~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 74 QELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445566666666666666666554
No 477
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=54.57 E-value=8.8 Score=46.04 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=21.5
Q ss_pred hhhHHHHhhC-----CCCEEEEEeccCCCCccccccc
Q psy11229 119 ARPIVDKVLS-----GFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 119 ~~plV~~vl~-----G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
+..+++++.. |.+..|+.. .||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 4556666665 345555444 999999999964
No 478
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=54.31 E-value=5 Score=43.08 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=0.0
Q ss_pred EEeccCCCCccccc
Q psy11229 135 FAYGQTGTGKTFTM 148 (705)
Q Consensus 135 faYGqTgSGKT~Tm 148 (705)
..||+|||||++.+
T Consensus 91 ~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 91 VVYGPTGSGKSQLL 104 (369)
T ss_pred EEECCCCCCHHHHH
No 479
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.28 E-value=7.5 Score=43.69 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
...+..++.|.| |++-++||||||.+
T Consensus 36 ~~aip~il~g~d--vi~~ApTGsGKTla 61 (423)
T PRK04837 36 ALALPLTLAGRD--VAGQAQTGTGKTMA 61 (423)
T ss_pred HHHHHHHhCCCc--EEEECCCCchHHHH
No 480
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.27 E-value=64 Score=25.75 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEER 581 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~ 581 (705)
+..+++..+...+.....++...+.+.++++.+.+.++++..-|...-..+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 481
>KOG2264|consensus
Probab=54.23 E-value=1e+02 Score=35.67 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy11229 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDN 598 (705)
Q Consensus 530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~ 598 (705)
+-..++.+-+.....|..++|-+-..|+.|++....+++.+.+.+...+.|+..+ .+.-++..+++.++
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 482
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.13 E-value=3.3e+02 Score=29.83 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 516 QLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF 595 (705)
Q Consensus 516 ~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~ 595 (705)
..|.+...+++..+.....++-.|+++..+...+-+.+..-+++++..+.........+.....++...+.+-+.+....
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a 87 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEA 87 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-----HHHHHHHHhcCChHHHHHHHh
Q psy11229 596 LDNVRQITKEY-----SYQQAIIQKFIPTKYLELMTQ 627 (705)
Q Consensus 596 ~~~~~~~~~el-----~l~~~ii~~fiP~~~~~ki~~ 627 (705)
+-.+.+....| .-...|=..--||.-+..++.
T Consensus 88 ~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~ 124 (344)
T PF12777_consen 88 EPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVME 124 (344)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHH
No 483
>KOG0742|consensus
Probab=53.93 E-value=3.8e+02 Score=30.45 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy11229 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERID-ME 550 (705)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~-~e 550 (705)
+...+.|+....++.+...+..+.-..++. .++|++++....+.-...-+-+.+|..+..+.+.+... +.
T Consensus 105 E~Trq~E~~~k~~~~eA~qa~~~~er~r~~---------~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e~e~qr~~n 175 (630)
T KOG0742|consen 105 EQTRQAEQQAKTKEYEAAQAQLKSERIRVQ---------AEERRKTLQEETQQKQQRARYQDKLARKRYEDELEAQRRLN 175 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy11229 551 EKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFL-DNVR 600 (705)
Q Consensus 551 ~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~-~~~~ 600 (705)
+.+-.+|++...++++.++ +-.+++..+..+.++|+-+++ ++||
T Consensus 176 ~ElvrmQEeS~irqE~aRr------aTeE~iqaqrr~tE~erae~EretiR 220 (630)
T KOG0742|consen 176 EELVRMQEESVIRQEQARR------ATEEQIQAQRRKTEMERAEAERETIR 220 (630)
T ss_pred HHHHHHhHHHHHHHHHHHH------hHHHHHHHHHHHhHHHHHHHHHHHHH
No 484
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=53.70 E-value=2e+02 Score=27.06 Aligned_cols=99 Identities=25% Similarity=0.405 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q psy11229 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEE-------------------- 533 (705)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~-------------------- 533 (705)
....+++.+....+.+.+.+..|...+ .........+......++..+....
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~--------~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~ 74 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQL--------EELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKD 74 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecC
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ----------------ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE 580 (705)
Q Consensus 534 ----------------~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e 580 (705)
.+...++-.+.....+++.+..+++++..+.+++..+...++++..+
T Consensus 75 ~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 75 KDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.68 E-value=3e+02 Score=29.27 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 479 LKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLD----------AAAQELEHRKQKEEELKKNIQEKDAERID 548 (705)
Q Consensus 479 ~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~----------~~~~el~~~~~~~~~l~~~l~~~~~e~~~ 548 (705)
|+...-....|..|+++-+.++.....++.+..-..-++.+ +++--|.+.++.+.+|++-++-......+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKE 579 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~ 579 (705)
-.+-+..+--++....+||+.+.+-..-++.
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
No 486
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.65 E-value=3.1e+02 Score=29.69 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE---GFLDNVRQ 601 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e---~~~~~~~~ 601 (705)
+.+.+....+++......=-....|...-+.|.-+++.|+.+|..+...+..++.+..+...++.+.++ .+...+..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q psy11229 602 ITKEYSYQQAIIQK 615 (705)
Q Consensus 602 ~~~el~l~~~ii~~ 615 (705)
+..+|+-...+|..
T Consensus 159 Lre~L~~rdeli~k 172 (302)
T PF09738_consen 159 LREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHH
No 487
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.54 E-value=4.3e+02 Score=31.01 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCCCCCCCCCcccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Q psy11229 425 IKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGG 504 (705)
Q Consensus 425 ~~~~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~ 504 (705)
.+.+.++..|+.++++.....+...+ +++|+.....+....+-.+.+..-+..-.
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~l~~~E-------------------------~e~L~~e~~~L~n~e~i~~~~~~~~~~L~ 239 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEADLQPGE-------------------------DEALEAEQQRLSNLEKLRELSQNALAALR 239 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCc-------------------------HHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Q ss_pred cc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 505 EN----------------------LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEG 562 (705)
Q Consensus 505 ~~----------------------~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~ 562 (705)
.. .......-...++....++++...........+.--.++...+++++..++.-...
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrK 319 (563)
T TIGR00634 240 GDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRK 319 (563)
T ss_pred CCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11229 563 LSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615 (705)
Q Consensus 563 ~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~ 615 (705)
....+..+...+..++.++..+..... +.+++...+.++.+++.-...-+..
T Consensus 320 yg~s~e~l~~~~~~l~~eL~~l~~~~~-~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 320 YGASVEEVLEYAEKIKEELDQLDDSDE-SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=53.04 E-value=4.3e+02 Score=30.82 Aligned_cols=157 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCCCCCCCCCcccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy11229 424 LIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVG 503 (705)
Q Consensus 424 l~~~~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~ 503 (705)
+.+...++..|+.++... ...+.++.........|...+......-+..
T Consensus 220 leeae~~l~~L~~e~~~~-------------------------------k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~ 268 (522)
T PF05701_consen 220 LEEAEEELEELKEELEAA-------------------------------KDLESKLAEASAELESLQAELEAAKESKLEE 268 (522)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred --------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 504 --------------GENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 504 --------------~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
-..+...++.-...|.....++...+...+.|+..|.....+...+.++.......+..+..+|.+
T Consensus 269 ~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 269 EAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 570 VSSMLLAAKEERK---DVQRENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 570 ~~~~l~~~~~e~~---d~~~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
+..+|..+..+-. +........++.+-.......++......
T Consensus 349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~ 393 (522)
T PF05701_consen 349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKE 393 (522)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=52.98 E-value=2.7e+02 Score=28.39 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 507 LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 507 ~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
+-.+....+..+..+...+.........-+..+.. .+..+.+.|+...-..++.+..+..++++++ ++..+..
T Consensus 9 L~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s------~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-~~~~~k~ 81 (206)
T PF14988_consen 9 LKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVS------RYAKQTSELQDQLLQKEKEQAKLQQELQALK-EFRRLKE 81 (206)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11229 587 ENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 587 e~~~e~e~~~~~~~~~~~e 605 (705)
....++..+...+.....+
T Consensus 82 ~qe~eI~~Le~e~~~~~~e 100 (206)
T PF14988_consen 82 QQEREIQTLEEELEKMRAE 100 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 490
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.95 E-value=11 Score=40.35 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 113 ~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+-|...+..+|...=..-+.+|.-||.-|||||+.|
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
No 491
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=52.65 E-value=4.3e+02 Score=30.73 Aligned_cols=120 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL 556 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l 556 (705)
..+++++.....|.+.+..+.......+..+ .-..+...+|++......++...++..+.-...++..+.++
T Consensus 316 ~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~--------~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~ 387 (570)
T COG4477 316 DYLEKAKENNEHLKEEIERVKESYRLAETEL--------GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEI 387 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHH--------HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 557 QEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604 (705)
Q Consensus 557 ~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~ 604 (705)
+..+...+++..++...|.++..+-..-.+...+=...+...-|.+++
T Consensus 388 ~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek 435 (570)
T COG4477 388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEK 435 (570)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.50 E-value=8.9 Score=43.65 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=0.0
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
...+..+++|.| |++..+||||||.+
T Consensus 29 ~~ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 29 QQAIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHH
No 493
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.41 E-value=8.4 Score=40.87 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=0.0
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+++..+.. +--++-+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
No 494
>KOG0163|consensus
Probab=52.20 E-value=4.3e+02 Score=32.09 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 485 DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 485 ~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
.+.....++..+-.++..|...+...+..-...++.+...+.--.--..++.........-...+-..+.+ ......
T Consensus 844 ~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~s---k~~q~~ 920 (1259)
T KOG0163|consen 844 ALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDS---KEQQQI 920 (1259)
T ss_pred HHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhh---hHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 565 KKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 565 ~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
..++++..--..++.|.+.-..+.++.+++....-.++++|++-+..
T Consensus 921 ~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~e 967 (1259)
T KOG0163|consen 921 EELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAE 967 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG3091|consensus
Probab=52.16 E-value=2.3e+02 Score=32.44 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q psy11229 501 LVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK------------ 568 (705)
Q Consensus 501 ~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~------------ 568 (705)
++|=+.+.++...|.+.....+..|.....+..+|+..-...-..++++..+..+|...+-.+--+++
T Consensus 333 vvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~ 412 (508)
T KOG3091|consen 333 VVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPD 412 (508)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 569 --KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQ 609 (705)
Q Consensus 569 --~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~ 609 (705)
+|+.+|..+..++.+= .++......+.+.+|.+.-.+++.
T Consensus 413 EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~q~~~~~~~ 454 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAP-NQLKARLDELYEILRMQNSQLKLQ 454 (508)
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHhhcchhccc
No 496
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=52.16 E-value=7.2 Score=40.08 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccccccccCCCC
Q psy11229 133 TIFAYGQTGTGKTFTMEGVNNVP 155 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~G~~~~~ 155 (705)
.++-||.+|+|||++.-+.+..+
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~~~ 36 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPGKT 36 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCCCC
No 497
>PRK04195 replication factor C large subunit; Provisional
Probab=51.63 E-value=9.8 Score=43.73 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhCCC-CEEEEEeccCCCCccccc
Q psy11229 117 ETARPIVDKVLSGF-NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 117 ~~~~plV~~vl~G~-N~tIfaYGqTgSGKT~Tm 148 (705)
..+..++.....|. ...++-||++|+|||++.
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 498
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.62 E-value=2.8e+02 Score=28.28 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERID 548 (705)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~ 548 (705)
+....++..++..++..+......-..+++++-.....+.+....-...+..-...|.. +.-......++....
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr------~Al~~k~~~~~~~~~ 103 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR------AALIEKQKAQELAEA 103 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~ 590 (705)
++..+..++..++.++.+|..+..++..++.....+....+.
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.02 E-value=17 Score=41.21 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=0.0
Q ss_pred ceeeCCCCChHHHHHhhhhhHHHHhhC--------CCCEEEEEeccCCCCccccc
Q psy11229 102 DTVFDANSKQLDIYNETARPIVDKVLS--------GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 102 D~Vf~~~~tQ~~Vy~~~~~plV~~vl~--------G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+-..-...+.+...+...|+.-+-. +.-..|+-+|.+|+|||+|.
T Consensus 58 ~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 58 EEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHH
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=50.84 E-value=14 Score=40.08 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=0.0
Q ss_pred ceeeCCCCChHHHHHhhhhhHHHHhhC----------CCCEEEEEeccCCCCccccc
Q psy11229 102 DTVFDANSKQLDIYNETARPIVDKVLS----------GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 102 D~Vf~~~~tQ~~Vy~~~~~plV~~vl~----------G~N~tIfaYGqTgSGKT~Tm 148 (705)
+.+.....+..+.....+...+...+. +-...|.-.|++|+|||.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 75 ERVKRKNLKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTI 131 (318)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHH
Done!