Query psy11229
Match_columns 705
No_of_seqs 491 out of 2050
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:28:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b6u_A Kinesin-like protein KI 100.0 1.3E-97 4E-102 806.4 29.9 355 12-428 17-372 (372)
2 2vvg_A Kinesin-2; motor protei 100.0 1.8E-95 6E-100 785.2 29.8 347 15-423 3-349 (350)
3 2y65_A Kinesin, kinesin heavy 100.0 4.1E-95 1.4E-99 786.5 28.8 352 12-436 7-361 (365)
4 1goj_A Kinesin, kinesin heavy 100.0 3.3E-93 1.1E-97 769.6 31.0 339 14-422 4-343 (355)
5 3cob_A Kinesin heavy chain-lik 100.0 1.5E-92 5E-97 766.8 33.4 347 14-440 3-349 (369)
6 3bfn_A Kinesin-like protein KI 100.0 4.5E-93 1.5E-97 773.0 28.7 355 12-440 17-374 (388)
7 2owm_A Nckin3-434, related to 100.0 2.4E-92 8.3E-97 781.8 33.5 368 11-427 33-432 (443)
8 1t5c_A CENP-E protein, centrom 100.0 2.1E-92 7.2E-97 761.7 32.0 339 14-422 2-341 (349)
9 1x88_A Kinesin-like protein KI 100.0 6.6E-93 2.2E-97 769.0 24.9 345 12-418 4-359 (359)
10 3lre_A Kinesin-like protein KI 100.0 3.2E-91 1.1E-95 754.7 31.0 348 12-409 6-355 (355)
11 1bg2_A Kinesin; motor protein, 100.0 1.6E-91 5.5E-96 748.6 27.8 322 13-409 4-325 (325)
12 2zfi_A Kinesin-like protein KI 100.0 4E-91 1.4E-95 756.8 30.8 340 15-417 3-362 (366)
13 2wbe_C Bipolar kinesin KRP-130 100.0 1.8E-91 6.2E-96 760.6 26.6 344 9-419 16-371 (373)
14 4a14_A Kinesin, kinesin-like p 100.0 1E-89 3.4E-94 741.2 31.3 332 13-407 8-344 (344)
15 2h58_A Kinesin-like protein KI 100.0 9.7E-90 3.3E-94 736.3 30.6 326 15-410 3-329 (330)
16 3nwn_A Kinesin-like protein KI 100.0 1E-89 3.5E-94 742.7 26.6 339 13-409 21-359 (359)
17 3gbj_A KIF13B protein; kinesin 100.0 8.6E-89 2.9E-93 735.5 29.2 335 16-408 1-349 (354)
18 2rep_A Kinesin-like protein KI 100.0 2.5E-88 8.6E-93 735.4 30.0 343 14-409 20-376 (376)
19 1ry6_A Internal kinesin; kines 100.0 1.2E-88 4.1E-93 734.6 27.1 336 17-418 1-340 (360)
20 3t0q_A AGR253WP; kinesin, alph 100.0 6.5E-88 2.2E-92 727.9 31.3 338 15-413 4-348 (349)
21 2nr8_A Kinesin-like protein KI 100.0 3.8E-88 1.3E-92 730.2 28.3 339 13-409 20-358 (358)
22 2heh_A KIF2C protein; kinesin, 100.0 3.9E-88 1.3E-92 734.1 27.3 332 13-412 48-385 (387)
23 1f9v_A Kinesin-like protein KA 100.0 2.1E-87 7.1E-92 722.9 31.5 293 95-414 50-346 (347)
24 1v8k_A Kinesin-like protein KI 100.0 6.9E-88 2.4E-92 736.3 27.3 333 14-414 69-407 (410)
25 4etp_A Kinesin-like protein KA 100.0 6.1E-86 2.1E-90 724.6 30.9 293 95-414 106-402 (403)
26 3dc4_A Kinesin-like protein NO 100.0 5.9E-86 2E-90 709.6 26.3 316 12-413 18-339 (344)
27 3u06_A Protein claret segregat 100.0 1.9E-85 6.5E-90 720.6 29.5 327 15-412 58-385 (412)
28 4h1g_A Maltose binding protein 100.0 1.3E-79 4.4E-84 724.5 31.6 335 14-410 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 9.8E-33 3.4E-37 243.0 4.4 97 335-431 2-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 7.5E-30 2.6E-34 232.2 8.5 95 338-432 1-96 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.6E-25 5.4E-30 228.6 10.4 231 97-414 57-294 (298)
32 2v71_A Nuclear distribution pr 96.8 0.052 1.8E-06 52.6 16.8 138 471-609 43-180 (189)
33 3oja_B Anopheles plasmodium-re 96.2 0.14 4.6E-06 58.4 18.5 57 528-584 514-570 (597)
34 2dfs_A Myosin-5A; myosin-V, in 95.8 0.063 2.1E-06 65.6 14.2 20 128-147 153-172 (1080)
35 3na7_A HP0958; flagellar bioge 95.8 0.69 2.4E-05 47.0 20.0 90 534-627 94-186 (256)
36 3na7_A HP0958; flagellar bioge 95.7 2 6.8E-05 43.6 22.7 114 529-642 96-235 (256)
37 2dfs_A Myosin-5A; myosin-V, in 95.1 0.36 1.2E-05 59.0 17.5 39 159-197 406-445 (1080)
38 1i84_S Smooth muscle myosin he 94.5 0.15 5.3E-06 63.0 12.3 22 127-148 165-186 (1184)
39 3ec2_A DNA replication protein 94.2 0.012 4.2E-07 56.0 1.3 51 98-149 6-56 (180)
40 3vkg_A Dynein heavy chain, cyt 94.1 2.1 7.2E-05 57.6 22.0 102 521-626 2019-2129(3245)
41 3q8t_A Beclin-1; autophagy, AT 93.8 2.5 8.5E-05 36.4 14.9 77 519-595 7-83 (96)
42 2w58_A DNAI, primosome compone 93.5 0.028 9.5E-07 54.4 2.2 51 98-149 21-72 (202)
43 1c1g_A Tropomyosin; contractIl 93.3 6.6 0.00022 38.5 22.2 13 427-439 4-16 (284)
44 3vkg_A Dynein heavy chain, cyt 93.3 2.3 7.8E-05 57.3 20.1 65 552-616 2015-2082(3245)
45 1i84_S Smooth muscle myosin he 93.2 0.29 1E-05 60.6 11.2 39 159-197 432-472 (1184)
46 2qgz_A Helicase loader, putati 92.8 0.039 1.3E-06 57.8 2.3 52 98-150 120-171 (308)
47 3u1c_A Tropomyosin alpha-1 cha 92.3 5.2 0.00018 34.7 15.7 82 524-609 17-98 (101)
48 3hnw_A Uncharacterized protein 92.2 1.2 4E-05 41.1 11.1 64 523-586 68-131 (138)
49 3hnw_A Uncharacterized protein 91.4 2 7E-05 39.5 11.8 65 511-575 70-134 (138)
50 3u59_A Tropomyosin beta chain; 91.2 6.8 0.00023 33.8 15.6 21 589-609 78-98 (101)
51 2fxo_A Myosin heavy chain, car 91.0 8.8 0.0003 34.7 17.5 43 534-576 52-94 (129)
52 2no2_A HIP-I, huntingtin-inter 90.5 6.2 0.00021 34.6 13.5 24 477-500 15-38 (107)
53 3etw_A Adhesin A; antiparallel 90.4 3.6 0.00012 36.7 11.9 32 585-616 70-101 (119)
54 2avr_X Adhesion A; antiparalle 90.3 9.4 0.00032 33.9 14.4 30 587-616 72-101 (119)
55 3o0z_A RHO-associated protein 89.5 14 0.00048 34.8 21.0 66 523-588 69-134 (168)
56 3u1c_A Tropomyosin alpha-1 cha 89.4 9.9 0.00034 32.8 14.6 28 530-557 44-71 (101)
57 3a7p_A Autophagy protein 16; c 88.9 9.1 0.00031 35.4 13.7 68 510-577 62-129 (152)
58 1deq_A Fibrinogen (alpha chain 88.7 12 0.00042 39.6 16.3 15 587-601 173-187 (390)
59 3u59_A Tropomyosin beta chain; 88.3 12 0.0004 32.3 14.1 19 535-553 49-67 (101)
60 3t15_A Ribulose bisphosphate c 88.2 0.21 7.3E-06 51.6 2.8 48 101-148 2-53 (293)
61 2v71_A Nuclear distribution pr 88.1 19 0.00066 34.6 21.8 15 531-545 57-71 (189)
62 1ixz_A ATP-dependent metallopr 87.2 0.23 8E-06 49.7 2.3 51 98-148 12-66 (254)
63 1jbk_A CLPB protein; beta barr 86.8 0.3 1E-05 45.4 2.7 30 120-149 32-61 (195)
64 2bjv_A PSP operon transcriptio 86.7 0.2 6.8E-06 50.6 1.4 45 98-148 2-46 (265)
65 2b9c_A Striated-muscle alpha t 86.6 3.7 0.00013 38.2 9.8 14 591-604 130-143 (147)
66 3te6_A Regulatory protein SIR3 86.5 0.23 7.9E-06 52.3 1.9 27 122-148 36-62 (318)
67 2ocy_A RAB guanine nucleotide 86.1 22 0.00075 33.1 17.8 45 523-567 51-95 (154)
68 1g8p_A Magnesium-chelatase 38 85.9 0.2 6.7E-06 52.5 1.0 45 96-148 18-62 (350)
69 2r62_A Cell division protease 85.8 0.29 9.9E-06 49.3 2.1 50 98-148 7-61 (268)
70 1ic2_A Tropomyosin alpha chain 85.8 12 0.00043 30.8 11.8 24 545-568 42-65 (81)
71 4b4t_L 26S protease subunit RP 85.7 1.9 6.4E-05 47.4 8.7 78 99-176 178-274 (437)
72 2p65_A Hypothetical protein PF 85.6 0.34 1.2E-05 45.1 2.4 30 120-149 32-61 (187)
73 3cf0_A Transitional endoplasmi 85.4 0.29 1E-05 50.7 2.0 50 99-148 12-66 (301)
74 3h4m_A Proteasome-activating n 85.4 0.3 1E-05 49.6 2.0 51 98-148 13-68 (285)
75 3oja_A Leucine-rich immune mol 85.1 13 0.00043 40.9 15.3 11 309-319 238-248 (487)
76 1l8q_A Chromosomal replication 85.0 0.42 1.4E-05 49.7 3.0 49 98-149 7-55 (324)
77 4b4t_M 26S protease regulatory 85.0 0.77 2.6E-05 50.4 5.2 78 99-176 178-274 (434)
78 2efr_A General control protein 85.0 25 0.00085 32.8 20.3 104 475-582 26-129 (155)
79 3oja_A Leucine-rich immune mol 84.9 12 0.00041 41.1 14.9 11 425-435 324-334 (487)
80 3bos_A Putative DNA replicatio 84.8 0.37 1.3E-05 47.0 2.3 46 99-149 25-70 (242)
81 4b4t_K 26S protease regulatory 84.7 1.9 6.3E-05 47.3 8.0 78 99-176 169-265 (428)
82 4etp_B Spindle POLE BODY-assoc 84.6 6.7 0.00023 40.8 11.5 88 96-202 91-183 (333)
83 3tnu_A Keratin, type I cytoske 84.4 20 0.0007 32.3 13.7 88 522-613 37-128 (131)
84 2kjq_A DNAA-related protein; s 83.6 0.54 1.8E-05 43.5 2.7 17 133-149 38-54 (149)
85 3ol1_A Vimentin; structural ge 83.3 24 0.00082 31.3 13.4 25 570-594 88-112 (119)
86 1x79_B RAB GTPase binding effe 83.3 23 0.0008 31.1 13.8 47 552-598 46-92 (112)
87 1d2n_A N-ethylmaleimide-sensit 83.1 0.66 2.3E-05 46.9 3.4 21 128-148 61-81 (272)
88 2jee_A YIIU; FTSZ, septum, coi 83.0 18 0.00063 29.9 11.3 52 522-573 26-77 (81)
89 3tnu_B Keratin, type II cytosk 82.8 26 0.0009 31.4 13.8 86 523-612 36-125 (129)
90 2fxo_A Myosin heavy chain, car 82.6 27 0.00092 31.4 19.4 38 546-583 85-122 (129)
91 4b4t_I 26S protease regulatory 82.4 5.8 0.0002 43.4 10.6 78 99-176 179-275 (437)
92 3b9p_A CG5977-PA, isoform A; A 82.2 0.42 1.4E-05 48.9 1.5 51 98-148 17-71 (297)
93 3d8b_A Fidgetin-like protein 1 81.6 0.39 1.3E-05 51.1 1.0 51 98-148 80-134 (357)
94 1iy2_A ATP-dependent metallopr 81.4 0.32 1.1E-05 49.6 0.3 52 97-148 35-90 (278)
95 1xwi_A SKD1 protein; VPS4B, AA 81.3 0.48 1.6E-05 49.7 1.6 50 99-148 9-62 (322)
96 1ic2_A Tropomyosin alpha chain 81.1 22 0.00074 29.3 12.0 46 524-569 14-59 (81)
97 3tnu_B Keratin, type II cytosk 80.8 7.7 0.00026 35.0 9.3 36 525-560 31-66 (129)
98 2v4h_A NF-kappa-B essential mo 80.8 28 0.00096 30.4 13.5 18 589-606 89-106 (110)
99 3tnu_A Keratin, type I cytoske 80.6 6.4 0.00022 35.7 8.7 36 525-560 33-68 (131)
100 2qz4_A Paraplegin; AAA+, SPG7, 80.4 0.35 1.2E-05 48.3 0.1 19 130-148 38-56 (262)
101 2v1u_A Cell division control p 80.2 0.52 1.8E-05 49.6 1.4 38 110-148 23-61 (387)
102 3ghg_A Fibrinogen alpha chain; 80.0 22 0.00075 39.2 13.9 45 548-592 114-158 (562)
103 4b4t_J 26S protease regulatory 79.9 1.4 4.7E-05 47.9 4.6 78 99-176 145-241 (405)
104 3i00_A HIP-I, huntingtin-inter 79.6 6.1 0.00021 35.4 7.9 25 416-440 9-33 (120)
105 2z4s_A Chromosomal replication 78.9 0.75 2.6E-05 50.5 2.2 49 97-149 100-148 (440)
106 1lv7_A FTSH; alpha/beta domain 78.9 0.47 1.6E-05 47.5 0.5 50 98-148 8-62 (257)
107 1qde_A EIF4A, translation init 77.8 0.94 3.2E-05 44.0 2.3 23 123-147 45-67 (224)
108 2chg_A Replication factor C sm 77.4 0.93 3.2E-05 43.1 2.2 21 128-148 35-55 (226)
109 1vec_A ATP-dependent RNA helic 77.3 1.1 3.7E-05 42.9 2.5 24 123-148 34-57 (206)
110 3eie_A Vacuolar protein sortin 77.2 0.62 2.1E-05 48.6 0.9 50 99-148 15-68 (322)
111 2gxq_A Heat resistant RNA depe 77.1 0.98 3.4E-05 43.1 2.2 23 123-147 32-54 (207)
112 3a7p_A Autophagy protein 16; c 76.6 48 0.0016 30.7 13.2 10 551-560 82-91 (152)
113 2x8a_A Nuclear valosin-contain 76.6 0.34 1.2E-05 49.7 -1.3 50 99-148 7-61 (274)
114 3syl_A Protein CBBX; photosynt 76.5 0.78 2.7E-05 47.0 1.4 20 129-148 65-84 (309)
115 3haj_A Human pacsin2 F-BAR; pa 76.2 84 0.0029 34.5 17.9 47 559-605 193-239 (486)
116 1f5n_A Interferon-induced guan 76.2 74 0.0025 36.0 17.7 22 127-148 34-55 (592)
117 3a7o_A Autophagy protein 16; c 76.1 19 0.00066 28.7 8.8 53 517-569 19-71 (75)
118 1sxj_C Activator 1 40 kDa subu 75.6 1.1 3.9E-05 46.9 2.3 42 100-149 23-64 (340)
119 3bas_A Myosin heavy chain, str 75.5 35 0.0012 28.6 13.0 31 534-564 25-55 (89)
120 3ol1_A Vimentin; structural ge 75.3 44 0.0015 29.6 14.7 67 545-611 35-104 (119)
121 4b4t_H 26S protease regulatory 75.3 1.5 5.1E-05 48.4 3.3 78 99-176 206-302 (467)
122 1p9r_A General secretion pathw 75.0 1.3 4.3E-05 48.4 2.6 29 121-149 157-185 (418)
123 3qh9_A Liprin-beta-2; coiled-c 75.0 34 0.0012 28.2 10.8 42 531-572 27-68 (81)
124 2oqq_A Transcription factor HY 74.9 11 0.00036 27.1 6.3 34 534-567 7-40 (42)
125 3ghg_A Fibrinogen alpha chain; 74.7 28 0.00096 38.4 12.8 7 652-658 206-212 (562)
126 2qp9_X Vacuolar protein sortin 74.6 0.91 3.1E-05 48.2 1.3 51 98-148 47-101 (355)
127 3vfd_A Spastin; ATPase, microt 74.5 0.9 3.1E-05 48.7 1.2 52 97-148 110-165 (389)
128 3bor_A Human initiation factor 74.4 0.89 3E-05 45.0 1.1 25 122-148 60-84 (237)
129 3dkp_A Probable ATP-dependent 73.8 1.4 4.7E-05 43.6 2.3 23 123-147 60-82 (245)
130 1fnn_A CDC6P, cell division co 73.4 1.8 6.3E-05 45.5 3.3 45 99-148 14-61 (389)
131 1x79_B RAB GTPase binding effe 73.2 48 0.0016 29.1 13.9 60 524-586 39-98 (112)
132 3jvv_A Twitching mobility prot 72.9 1.3 4.6E-05 47.2 2.1 29 121-149 113-141 (356)
133 2zan_A Vacuolar protein sortin 72.9 0.94 3.2E-05 49.7 0.9 51 98-148 130-184 (444)
134 3uk6_A RUVB-like 2; hexameric 72.7 1.6 5.5E-05 45.9 2.7 46 98-148 40-87 (368)
135 2pl3_A Probable ATP-dependent 71.6 1.7 5.6E-05 42.7 2.3 24 123-148 56-79 (236)
136 3b6e_A Interferon-induced heli 71.6 1 3.5E-05 43.2 0.7 23 124-148 43-65 (216)
137 1t6n_A Probable ATP-dependent 71.2 1.7 5.7E-05 42.1 2.2 24 123-148 45-68 (220)
138 3mq9_A Bone marrow stromal ant 70.4 1.2E+02 0.0042 32.7 18.2 19 383-401 277-295 (471)
139 2c9o_A RUVB-like 1; hexameric 70.2 2.2 7.7E-05 46.8 3.2 46 98-148 33-80 (456)
140 2eqb_B RAB guanine nucleotide 70.1 52 0.0018 28.2 15.1 43 525-567 21-63 (97)
141 3hu3_A Transitional endoplasmi 70.0 1.7 5.7E-05 48.5 2.1 50 99-148 201-255 (489)
142 1wrb_A DJVLGB; RNA helicase, D 69.9 1.8 6.3E-05 42.9 2.2 24 123-148 54-77 (253)
143 3qh9_A Liprin-beta-2; coiled-c 69.7 46 0.0016 27.4 10.8 50 524-573 27-76 (81)
144 2efk_A CDC42-interacting prote 69.6 97 0.0033 31.1 20.2 39 567-605 181-220 (301)
145 3iuy_A Probable ATP-dependent 69.2 2 6.9E-05 41.8 2.3 24 123-148 51-74 (228)
146 2eyu_A Twitching motility prot 69.1 2.1 7.2E-05 43.4 2.5 20 129-148 23-42 (261)
147 1m1j_B Fibrinogen beta chain; 69.0 1.4E+02 0.0048 32.7 17.0 28 539-566 130-157 (464)
148 3ly5_A ATP-dependent RNA helic 68.7 1.4 4.8E-05 44.4 1.1 24 122-147 84-107 (262)
149 3fmo_B ATP-dependent RNA helic 68.2 1.8 6.2E-05 44.7 1.8 27 122-148 122-148 (300)
150 2qby_A CDC6 homolog 1, cell di 68.0 1.7 5.9E-05 45.4 1.6 20 129-148 43-62 (386)
151 2qby_B CDC6 homolog 3, cell di 67.7 2.2 7.4E-05 44.9 2.3 45 99-148 17-62 (384)
152 3llm_A ATP-dependent RNA helic 67.5 1.7 5.9E-05 42.9 1.4 26 121-148 68-93 (235)
153 3mq9_A Bone marrow stromal ant 67.4 1.3E+02 0.0043 32.6 16.7 36 532-567 399-434 (471)
154 3ber_A Probable ATP-dependent 67.0 2.3 7.8E-05 42.5 2.2 24 123-148 74-97 (249)
155 3nmd_A CGMP dependent protein 67.0 18 0.00063 29.2 7.0 36 518-553 28-63 (72)
156 2oxc_A Probable ATP-dependent 66.8 2.4 8.3E-05 41.5 2.3 23 123-147 55-77 (230)
157 2w6a_A ARF GTPase-activating p 66.7 40 0.0014 26.0 8.4 42 534-575 17-58 (63)
158 1u0j_A DNA replication protein 66.7 2.6 8.9E-05 43.1 2.6 29 120-148 90-121 (267)
159 1m1j_B Fibrinogen beta chain; 66.4 1.6E+02 0.0053 32.3 17.1 12 485-496 101-112 (464)
160 3eiq_A Eukaryotic initiation f 66.1 2.4 8.3E-05 44.9 2.3 26 121-148 69-94 (414)
161 1sxj_D Activator 1 41 kDa subu 65.8 1.9 6.4E-05 44.9 1.3 41 100-148 35-75 (353)
162 3fe2_A Probable ATP-dependent 65.6 2.2 7.4E-05 42.2 1.7 24 123-148 60-83 (242)
163 1tue_A Replication protein E1; 65.3 1.8 6.2E-05 42.7 1.0 27 123-149 48-76 (212)
164 1in4_A RUVB, holliday junction 64.8 2.6 9E-05 44.1 2.3 16 133-148 53-68 (334)
165 3co5_A Putative two-component 64.8 3.1 0.00011 37.7 2.5 20 131-150 27-46 (143)
166 3pxg_A Negative regulator of g 64.3 3.2 0.00011 45.8 2.9 43 100-150 178-220 (468)
167 3s9g_A Protein hexim1; cyclin 64.2 50 0.0017 28.1 9.4 21 545-565 38-58 (104)
168 1q0u_A Bstdead; DEAD protein, 64.2 1.8 6.3E-05 41.9 0.9 23 123-147 35-57 (219)
169 2eqb_B RAB guanine nucleotide 64.0 69 0.0024 27.4 13.0 13 486-498 7-19 (97)
170 3q8t_A Beclin-1; autophagy, AT 63.3 70 0.0024 27.2 13.8 21 477-497 11-31 (96)
171 3fmp_B ATP-dependent RNA helic 63.2 2.8 9.7E-05 45.8 2.2 26 122-147 122-147 (479)
172 2v66_B Nuclear distribution pr 63.2 78 0.0027 27.7 16.0 30 522-551 41-70 (111)
173 2efl_A Formin-binding protein 62.7 1.3E+02 0.0044 30.1 20.7 40 566-605 187-227 (305)
174 1njg_A DNA polymerase III subu 62.5 3.1 0.00011 39.8 2.1 17 132-148 46-62 (250)
175 2dhr_A FTSH; AAA+ protein, hex 62.4 2.3 7.8E-05 47.5 1.3 50 98-148 27-81 (499)
176 2ewv_A Twitching motility prot 62.2 2.9 9.8E-05 44.8 2.0 28 121-148 126-153 (372)
177 3swk_A Vimentin; cytoskeleton, 62.2 52 0.0018 27.4 9.4 30 535-564 54-83 (86)
178 1iqp_A RFCS; clamp loader, ext 62.1 3.2 0.00011 42.4 2.3 42 100-149 23-64 (327)
179 3vp9_A General transcriptional 62.1 17 0.00057 30.9 6.2 46 563-608 41-86 (92)
180 1ofh_A ATP-dependent HSL prote 61.9 2.8 9.4E-05 42.6 1.7 18 131-148 50-67 (310)
181 2j0s_A ATP-dependent RNA helic 61.4 3.2 0.00011 44.0 2.2 25 122-148 67-91 (410)
182 3iv1_A Tumor susceptibility ge 61.4 54 0.0018 26.9 8.9 53 549-605 16-68 (78)
183 1f5n_A Interferon-induced guan 61.4 1.1E+02 0.0038 34.6 15.0 17 588-604 565-581 (592)
184 4emc_A Monopolin complex subun 61.0 29 0.00098 33.2 8.3 37 547-583 23-59 (190)
185 3n70_A Transport activator; si 60.9 2.4 8.3E-05 38.5 1.0 20 129-148 22-41 (145)
186 3u61_B DNA polymerase accessor 60.8 2.2 7.4E-05 44.1 0.7 19 131-149 48-66 (324)
187 4fcw_A Chaperone protein CLPB; 60.7 2.7 9.2E-05 42.9 1.4 18 131-148 47-64 (311)
188 1gvn_B Zeta; postsegregational 60.2 5.7 0.0002 40.7 3.8 30 119-148 16-50 (287)
189 4gkw_A Spindle assembly abnorm 60.1 96 0.0033 27.8 14.6 55 520-574 29-83 (167)
190 3a7o_A Autophagy protein 16; c 60.0 62 0.0021 25.8 8.7 42 534-582 22-63 (75)
191 3fht_A ATP-dependent RNA helic 59.7 3.1 0.00011 43.9 1.7 27 122-148 55-81 (412)
192 3pvs_A Replication-associated 59.4 3.7 0.00013 45.1 2.3 44 100-148 24-67 (447)
193 2chq_A Replication factor C sm 59.4 3.1 0.00011 42.3 1.6 21 128-148 35-55 (319)
194 3h1t_A Type I site-specific re 59.3 4 0.00014 46.0 2.6 27 122-149 190-216 (590)
195 3pey_A ATP-dependent RNA helic 59.2 3.1 0.00011 43.5 1.6 26 123-148 36-61 (395)
196 2fz4_A DNA repair protein RAD2 59.2 3.4 0.00012 41.0 1.8 23 125-149 104-126 (237)
197 2oap_1 GSPE-2, type II secreti 59.1 4 0.00014 45.7 2.5 22 126-149 257-278 (511)
198 3o0z_A RHO-associated protein 59.0 1.2E+02 0.0041 28.5 22.3 52 533-584 72-123 (168)
199 3pfi_A Holliday junction ATP-d 58.9 4.4 0.00015 41.9 2.7 44 100-148 27-72 (338)
200 2ce7_A Cell division protein F 58.8 2.4 8.2E-05 47.0 0.6 50 98-148 12-66 (476)
201 2e7s_A RAB guanine nucleotide 58.4 38 0.0013 30.8 8.3 41 527-567 43-83 (135)
202 2r44_A Uncharacterized protein 58.4 2.6 8.9E-05 43.7 0.8 34 110-149 31-64 (331)
203 2z0m_A 337AA long hypothetical 58.4 4 0.00014 41.6 2.2 24 123-148 25-48 (337)
204 1deq_A Fibrinogen (alpha chain 58.1 1.9E+02 0.0066 30.6 15.3 89 548-639 117-222 (390)
205 2xdj_A Uncharacterized protein 57.7 81 0.0028 26.1 10.1 38 547-584 23-60 (83)
206 3efg_A Protein SLYX homolog; x 57.6 30 0.001 28.4 6.9 28 550-577 27-54 (78)
207 1s2m_A Putative ATP-dependent 57.5 3.6 0.00012 43.4 1.7 24 123-148 52-75 (400)
208 1gmj_A ATPase inhibitor; coile 57.5 81 0.0028 26.2 9.4 26 545-570 52-77 (84)
209 1ci6_A Transcription factor AT 56.9 34 0.0012 26.7 6.9 33 531-563 24-56 (63)
210 1w5s_A Origin recognition comp 56.7 5.4 0.00019 42.2 3.0 25 124-148 40-69 (412)
211 3swk_A Vimentin; cytoskeleton, 56.3 86 0.003 26.1 13.1 75 534-608 4-81 (86)
212 2i4i_A ATP-dependent RNA helic 56.1 4.5 0.00015 42.9 2.2 24 123-148 46-69 (417)
213 3cf2_A TER ATPase, transitiona 56.1 6.4 0.00022 46.5 3.7 78 98-175 200-296 (806)
214 2p5t_B PEZT; postsegregational 55.6 6 0.00021 39.5 2.9 36 113-148 13-49 (253)
215 3jsv_C NF-kappa-B essential mo 55.5 96 0.0033 26.3 10.3 16 591-606 69-84 (94)
216 3iox_A AGI/II, PA; alpha helix 55.4 2.4E+02 0.0083 30.9 15.9 6 620-625 146-151 (497)
217 1ci6_A Transcription factor AT 54.9 63 0.0021 25.2 8.1 40 542-581 21-60 (63)
218 2i1j_A Moesin; FERM, coiled-co 54.6 11 0.00037 42.8 5.1 38 95-132 74-116 (575)
219 2avr_X Adhesion A; antiparalle 54.3 1.2E+02 0.004 26.9 14.8 18 512-529 30-47 (119)
220 2efr_A General control protein 53.2 1.4E+02 0.0049 27.6 21.5 13 556-568 75-87 (155)
221 1qvr_A CLPB protein; coiled co 53.1 3.3 0.00011 49.3 0.6 31 120-150 180-210 (854)
222 1xti_A Probable ATP-dependent 52.5 5.8 0.0002 41.5 2.3 25 122-148 38-62 (391)
223 2i1j_A Moesin; FERM, coiled-co 52.3 22 0.00074 40.3 7.1 18 105-122 20-37 (575)
224 1n0w_A DNA repair protein RAD5 52.2 5.6 0.00019 38.7 2.0 30 119-148 9-41 (243)
225 3oiy_A Reverse gyrase helicase 52.0 5.6 0.00019 42.4 2.1 23 123-147 30-52 (414)
226 1sxj_B Activator 1 37 kDa subu 51.9 5.4 0.00018 40.6 1.9 21 128-148 39-59 (323)
227 1rif_A DAR protein, DNA helica 51.6 3.5 0.00012 41.7 0.4 23 125-149 124-146 (282)
228 3efg_A Protein SLYX homolog; x 51.6 38 0.0013 27.8 6.6 39 539-577 23-61 (78)
229 3i5x_A ATP-dependent RNA helic 51.1 6.9 0.00023 43.6 2.8 26 122-147 102-127 (563)
230 3fho_A ATP-dependent RNA helic 51.1 5.1 0.00017 44.5 1.6 25 123-147 150-174 (508)
231 2db3_A ATP-dependent RNA helic 51.0 6 0.00021 42.8 2.2 24 122-147 86-109 (434)
232 2ocy_A RAB guanine nucleotide 50.9 1.5E+02 0.0053 27.4 16.3 28 588-615 106-133 (154)
233 1ypw_A Transitional endoplasmi 50.9 14 0.00049 43.5 5.6 53 96-148 198-255 (806)
234 1hqc_A RUVB; extended AAA-ATPa 50.7 6.8 0.00023 40.0 2.5 44 100-148 10-55 (324)
235 3m91_A Proteasome-associated A 50.7 62 0.0021 24.3 7.0 30 555-584 13-42 (51)
236 3s4r_A Vimentin; alpha-helix, 50.4 1.1E+02 0.0039 25.7 11.5 32 584-615 50-81 (93)
237 4b3f_X DNA-binding protein smu 50.1 5.8 0.0002 45.5 2.0 26 123-149 198-223 (646)
238 1sxj_E Activator 1 40 kDa subu 49.5 5.3 0.00018 41.5 1.4 15 134-148 39-53 (354)
239 2w0m_A SSO2452; RECA, SSPF, un 49.3 6.9 0.00024 37.5 2.1 28 121-148 10-40 (235)
240 3c8u_A Fructokinase; YP_612366 49.2 9.7 0.00033 36.5 3.2 29 120-148 9-39 (208)
241 1ojl_A Transcriptional regulat 49.1 5 0.00017 41.5 1.1 20 129-148 23-42 (304)
242 1c4o_A DNA nucleotide excision 49.0 9.5 0.00032 44.0 3.5 46 99-150 2-47 (664)
243 1fuu_A Yeast initiation factor 48.6 4.3 0.00015 42.5 0.5 24 123-148 52-75 (394)
244 2v1x_A ATP-dependent DNA helic 47.8 8.6 0.00029 43.7 2.9 24 122-147 52-75 (591)
245 1t2k_D Cyclic-AMP-dependent tr 47.7 66 0.0022 24.8 7.2 32 547-578 25-56 (61)
246 1rz3_A Hypothetical protein rb 47.6 9.9 0.00034 36.3 2.9 18 131-148 22-39 (201)
247 4gp7_A Metallophosphoesterase; 47.6 5.4 0.00018 37.2 1.0 17 133-149 11-27 (171)
248 2cvh_A DNA repair and recombin 47.5 7.4 0.00025 37.1 2.0 29 120-148 6-37 (220)
249 1jr3_A DNA polymerase III subu 47.3 11 0.00037 39.3 3.4 18 131-148 38-55 (373)
250 3lay_A Zinc resistance-associa 47.3 1.7E+02 0.0057 27.7 11.3 18 508-525 66-83 (175)
251 4a2p_A RIG-I, retinoic acid in 47.1 7.7 0.00026 42.7 2.3 24 123-148 16-39 (556)
252 1hv8_A Putative ATP-dependent 46.9 6.5 0.00022 40.5 1.6 24 124-148 38-61 (367)
253 3upu_A ATP-dependent DNA helic 46.9 9.1 0.00031 41.8 2.9 37 107-148 26-62 (459)
254 1wle_A Seryl-tRNA synthetase; 46.7 2.1E+02 0.0072 31.6 13.8 21 596-616 136-156 (501)
255 2jlq_A Serine protease subunit 46.7 6.6 0.00022 42.9 1.6 25 122-147 11-35 (451)
256 1w36_D RECD, exodeoxyribonucle 46.5 5 0.00017 45.8 0.7 19 131-149 164-182 (608)
257 1hjb_A Ccaat/enhancer binding 46.4 97 0.0033 25.9 8.4 32 529-560 35-66 (87)
258 3b85_A Phosphate starvation-in 46.3 7.8 0.00027 37.7 2.0 25 122-148 15-39 (208)
259 3viq_A SWI5-dependent recombin 46.2 1.3E+02 0.0046 26.7 9.8 12 628-639 110-121 (122)
260 3nbx_X ATPase RAVA; AAA+ ATPas 46.0 7.7 0.00026 43.2 2.1 26 122-149 34-59 (500)
261 1um8_A ATP-dependent CLP prote 45.9 5.4 0.00018 42.2 0.8 18 131-148 72-89 (376)
262 4a74_A DNA repair and recombin 45.1 8.2 0.00028 37.1 1.9 29 120-148 11-42 (231)
263 3tbk_A RIG-I helicase domain; 44.8 8.7 0.0003 42.1 2.3 24 123-148 13-36 (555)
264 4ag6_A VIRB4 ATPase, type IV s 44.6 5.1 0.00017 42.7 0.3 18 131-148 35-52 (392)
265 2gk6_A Regulator of nonsense t 44.0 7.9 0.00027 44.2 1.8 19 132-150 196-214 (624)
266 2r8r_A Sensor protein; KDPD, P 43.8 6.2 0.00021 39.3 0.8 20 131-150 6-25 (228)
267 3etw_A Adhesin A; antiparallel 43.6 1.7E+02 0.0059 25.9 14.1 15 514-528 32-46 (119)
268 3sqw_A ATP-dependent RNA helic 43.6 10 0.00036 42.5 2.7 26 122-147 51-76 (579)
269 3lw7_A Adenylate kinase relate 43.6 7.2 0.00025 35.4 1.2 16 133-148 3-18 (179)
270 2lw1_A ABC transporter ATP-bin 43.5 1.1E+02 0.0038 25.3 8.5 60 520-579 19-84 (89)
271 4emc_A Monopolin complex subun 43.5 1.4E+02 0.0046 28.6 9.9 9 630-638 89-97 (190)
272 1hjb_A Ccaat/enhancer binding 43.5 1.4E+02 0.0049 24.9 9.9 33 545-577 37-69 (87)
273 2qag_C Septin-7; cell cycle, c 43.5 7.6 0.00026 42.2 1.5 23 126-148 26-48 (418)
274 3qwe_A GMIP, GEM-interacting p 43.4 2.8E+02 0.0095 28.2 14.9 121 512-632 122-262 (279)
275 3iyk_A VP5; icosahedral virus; 43.2 3.7E+02 0.013 29.5 16.3 111 487-601 93-203 (526)
276 4fla_A Regulation of nuclear P 43.1 1.5E+02 0.0052 27.3 10.1 75 503-577 69-147 (152)
277 3hws_A ATP-dependent CLP prote 43.0 6.6 0.00023 41.3 0.9 18 131-148 51-68 (363)
278 2fwr_A DNA repair protein RAD2 42.8 8.9 0.00031 41.6 2.0 23 124-148 103-125 (472)
279 3b9q_A Chloroplast SRP recepto 42.8 13 0.00044 38.4 3.1 17 132-148 101-117 (302)
280 1r6b_X CLPA protein; AAA+, N-t 42.7 9.9 0.00034 44.3 2.4 29 122-150 198-226 (758)
281 4gl2_A Interferon-induced heli 42.5 9 0.00031 43.9 2.0 24 123-148 16-39 (699)
282 1gd2_E Transcription factor PA 42.5 42 0.0015 26.9 5.4 26 549-574 41-66 (70)
283 3pxi_A Negative regulator of g 42.3 11 0.00036 44.2 2.6 29 122-150 192-220 (758)
284 2dr3_A UPF0273 protein PH0284; 41.9 8.8 0.0003 37.3 1.6 28 121-148 10-40 (247)
285 3htk_A Structural maintenance 41.7 1.1E+02 0.0038 23.1 8.7 11 567-577 35-45 (60)
286 3e70_C DPA, signal recognition 41.7 16 0.00055 38.2 3.6 18 131-148 129-146 (328)
287 3tr0_A Guanylate kinase, GMP k 41.6 7.5 0.00026 36.7 1.0 16 133-148 9-24 (205)
288 3tau_A Guanylate kinase, GMP k 41.4 7.6 0.00026 37.4 1.0 16 133-148 10-25 (208)
289 1zxa_A CGMP-dependent protein 41.1 35 0.0012 27.2 4.6 41 534-574 15-55 (67)
290 2b8t_A Thymidine kinase; deoxy 41.1 7.5 0.00026 38.5 0.9 20 131-150 12-31 (223)
291 1kgd_A CASK, peripheral plasma 41.1 7.8 0.00027 36.3 1.0 16 133-148 7-22 (180)
292 4b6x_A AVRRPS4, avirulence pro 41.0 1.2E+02 0.0042 24.8 7.8 10 595-604 67-76 (90)
293 3pxi_A Negative regulator of g 41.0 16 0.00056 42.5 3.9 17 132-148 522-538 (758)
294 1e9r_A Conjugal transfer prote 40.8 5.3 0.00018 43.2 -0.3 18 131-148 53-70 (437)
295 2b9c_A Striated-muscle alpha t 40.1 2.2E+02 0.0075 26.0 15.6 48 522-569 72-119 (147)
296 1sxj_A Activator 1 95 kDa subu 39.8 12 0.00043 41.5 2.5 17 132-148 78-94 (516)
297 1m1j_A Fibrinogen alpha subuni 39.6 4E+02 0.014 28.9 16.1 12 549-560 116-127 (491)
298 2qnr_A Septin-2, protein NEDD5 39.6 8.2 0.00028 39.8 0.9 24 125-148 12-35 (301)
299 3e1s_A Exodeoxyribonuclease V, 39.5 9.3 0.00032 43.3 1.4 19 131-149 204-222 (574)
300 3swy_A Cyclic nucleotide-gated 39.4 1.1E+02 0.0038 22.5 7.6 35 548-582 2-36 (46)
301 1go4_E MAD1 (mitotic arrest de 39.4 1.3E+02 0.0046 25.8 8.3 22 479-500 21-42 (100)
302 2orw_A Thymidine kinase; TMTK, 39.3 7.4 0.00025 37.0 0.5 18 133-150 5-22 (184)
303 1wp9_A ATP-dependent RNA helic 39.1 10 0.00034 40.4 1.6 24 123-149 18-41 (494)
304 2dq0_A Seryl-tRNA synthetase; 39.1 1.2E+02 0.0041 33.2 10.2 27 591-617 84-110 (455)
305 1ly1_A Polynucleotide kinase; 39.1 9.4 0.00032 35.1 1.2 17 132-148 3-19 (181)
306 2e7s_A RAB guanine nucleotide 39.1 63 0.0022 29.3 6.6 7 491-497 32-38 (135)
307 3lfu_A DNA helicase II; SF1 he 39.0 8.1 0.00028 43.9 0.8 19 131-149 22-40 (647)
308 1qvr_A CLPB protein; coiled co 38.7 19 0.00064 42.7 4.0 17 132-148 589-605 (854)
309 1zp6_A Hypothetical protein AT 38.4 8.6 0.00029 35.9 0.8 17 132-148 10-26 (191)
310 3trf_A Shikimate kinase, SK; a 38.3 9.8 0.00034 35.4 1.2 15 133-147 7-21 (185)
311 1ye8_A Protein THEP1, hypothet 38.3 9.2 0.00032 36.2 1.0 15 134-148 3-17 (178)
312 3m91_A Proteasome-associated A 38.2 1.3E+02 0.0043 22.7 7.2 28 555-582 20-47 (51)
313 3uul_A Utrophin; spectrin repe 38.2 1.8E+02 0.006 24.4 10.0 22 479-500 4-25 (118)
314 3a00_A Guanylate kinase, GMP k 38.0 8.9 0.0003 36.1 0.8 15 134-148 4-18 (186)
315 3swf_A CGMP-gated cation chann 38.0 1.6E+02 0.0054 23.9 8.0 35 548-582 4-38 (74)
316 1r6b_X CLPA protein; AAA+, N-t 37.8 20 0.00067 41.8 3.9 17 132-148 489-505 (758)
317 2ykg_A Probable ATP-dependent 37.8 14 0.00047 42.3 2.6 22 124-147 23-44 (696)
318 1qhx_A CPT, protein (chloramph 37.4 10 0.00035 34.9 1.2 16 133-148 5-20 (178)
319 3abh_A Pacsin2, protein kinase 37.0 3.4E+02 0.012 27.3 16.2 75 567-641 208-296 (312)
320 1lvg_A Guanylate kinase, GMP k 36.8 9.2 0.00032 36.6 0.8 16 133-148 6-21 (198)
321 2xzl_A ATP-dependent helicase 36.8 12 0.00041 44.2 1.9 18 132-149 376-393 (802)
322 4h22_A Leucine-rich repeat fli 36.5 2.1E+02 0.0071 24.7 10.8 41 543-583 36-76 (103)
323 1wle_A Seryl-tRNA synthetase; 36.4 1.6E+02 0.0054 32.6 10.7 11 520-530 81-91 (501)
324 2og2_A Putative signal recogni 36.3 19 0.00066 38.2 3.2 17 132-148 158-174 (359)
325 1rj9_A FTSY, signal recognitio 36.3 11 0.00036 39.1 1.2 17 132-148 103-119 (304)
326 3iij_A Coilin-interacting nucl 36.0 10 0.00036 35.1 1.0 16 133-148 13-28 (180)
327 3cve_A Homer protein homolog 1 36.0 1.7E+02 0.0058 23.6 11.0 20 550-569 27-46 (72)
328 1ez3_A Syntaxin-1A; three heli 36.0 2.1E+02 0.0073 24.7 13.8 55 526-580 57-117 (127)
329 3sop_A Neuronal-specific septi 35.9 10 0.00036 38.4 1.0 19 130-148 1-19 (270)
330 2j41_A Guanylate kinase; GMP, 35.8 11 0.00036 35.7 1.0 16 133-148 8-23 (207)
331 2wjy_A Regulator of nonsense t 35.6 13 0.00044 44.0 1.8 19 132-150 372-390 (800)
332 1odf_A YGR205W, hypothetical 3 35.6 19 0.00066 36.8 3.0 20 129-148 29-48 (290)
333 2bdt_A BH3686; alpha-beta prot 35.2 11 0.00038 35.3 1.0 16 133-148 4-19 (189)
334 3m9b_A Proteasome-associated A 35.1 30 0.001 34.7 4.1 37 550-586 53-89 (251)
335 2d7d_A Uvrabc system protein B 35.1 21 0.00072 41.0 3.5 89 99-193 5-98 (661)
336 2ehv_A Hypothetical protein PH 35.0 11 0.00038 36.7 1.0 17 133-149 32-48 (251)
337 2v66_B Nuclear distribution pr 34.9 2.3E+02 0.0079 24.7 17.4 21 549-569 40-60 (111)
338 1gu4_A CAAT/enhancer binding p 34.8 1.6E+02 0.0056 24.0 7.9 30 531-560 37-66 (78)
339 3lnc_A Guanylate kinase, GMP k 34.7 13 0.00044 36.2 1.4 16 133-148 29-44 (231)
340 1w4r_A Thymidine kinase; type 34.7 13 0.00043 36.2 1.3 25 122-146 11-35 (195)
341 1g6u_A Domain swapped dimer; d 34.3 53 0.0018 23.2 4.0 26 552-577 21-46 (48)
342 1lkx_A Myosin IE heavy chain; 34.2 20 0.0007 41.5 3.2 21 128-148 91-111 (697)
343 2px0_A Flagellar biosynthesis 34.2 11 0.00037 38.8 0.8 18 132-149 106-123 (296)
344 3qne_A Seryl-tRNA synthetase, 33.9 1.7E+02 0.0057 32.3 10.3 28 590-617 85-112 (485)
345 1oyw_A RECQ helicase, ATP-depe 33.9 11 0.00037 42.1 0.8 25 122-148 33-57 (523)
346 3uie_A Adenylyl-sulfate kinase 33.8 16 0.00056 34.6 2.0 19 130-148 24-42 (200)
347 1znw_A Guanylate kinase, GMP k 33.7 12 0.00041 35.8 1.0 21 126-148 17-37 (207)
348 1d7m_A Cortexillin I; coiled-c 33.6 2.1E+02 0.0072 23.9 13.6 20 520-539 36-55 (101)
349 1xx6_A Thymidine kinase; NESG, 33.6 10 0.00035 36.5 0.4 18 133-150 10-27 (191)
350 2qen_A Walker-type ATPase; unk 33.5 15 0.00053 37.4 1.9 17 132-148 32-48 (350)
351 2yhs_A FTSY, cell division pro 33.4 21 0.00072 39.7 3.0 17 132-148 294-310 (503)
352 4a4z_A Antiviral helicase SKI2 33.2 16 0.00055 44.2 2.2 32 604-635 835-869 (997)
353 2p22_C Protein SRN2; endosome, 33.2 3.3E+02 0.011 26.0 14.1 47 569-615 132-183 (192)
354 1uaa_A REP helicase, protein ( 33.2 12 0.0004 43.1 0.9 20 130-149 14-33 (673)
355 4ani_A Protein GRPE; chaperone 33.1 1.7E+02 0.0057 28.6 9.1 35 535-569 64-98 (213)
356 4a2w_A RIG-I, retinoic acid in 33.0 16 0.00053 44.0 2.0 24 123-148 257-280 (936)
357 1w9i_A Myosin II heavy chain; 32.7 22 0.00076 41.6 3.2 21 128-148 169-189 (770)
358 4a2q_A RIG-I, retinoic acid in 32.7 17 0.00059 42.6 2.3 24 123-148 257-280 (797)
359 1f2t_A RAD50 ABC-ATPase; DNA d 32.6 15 0.0005 33.6 1.4 16 133-148 25-40 (149)
360 3kta_A Chromosome segregation 32.5 11 0.00039 34.8 0.6 16 133-148 28-43 (182)
361 3vaa_A Shikimate kinase, SK; s 32.4 14 0.00047 35.1 1.2 16 133-148 27-42 (199)
362 2i3b_A HCR-ntpase, human cance 32.3 12 0.00042 35.8 0.8 16 133-148 3-18 (189)
363 2gza_A Type IV secretion syste 32.1 12 0.0004 39.7 0.6 22 125-148 171-192 (361)
364 2oca_A DAR protein, ATP-depend 32.0 12 0.0004 41.2 0.7 22 126-149 125-146 (510)
365 3kb2_A SPBC2 prophage-derived 31.8 15 0.00051 33.4 1.3 16 133-148 3-18 (173)
366 2ga8_A Hypothetical 39.9 kDa p 31.8 27 0.00093 37.1 3.4 21 128-148 21-41 (359)
367 2v26_A Myosin VI; calmodulin-b 31.7 23 0.0008 41.6 3.2 21 128-148 137-157 (784)
368 1kht_A Adenylate kinase; phosp 31.6 13 0.00046 34.3 0.9 16 133-148 5-20 (192)
369 1j8m_F SRP54, signal recogniti 31.6 35 0.0012 35.0 4.2 18 132-149 99-116 (297)
370 2pt7_A CAG-ALFA; ATPase, prote 31.6 12 0.0004 39.2 0.6 21 126-148 168-188 (330)
371 2ze6_A Isopentenyl transferase 31.6 14 0.00049 36.8 1.2 15 133-147 3-17 (253)
372 2fna_A Conserved hypothetical 31.5 14 0.00049 37.7 1.2 17 132-148 31-47 (357)
373 1moz_A ARL1, ADP-ribosylation 31.4 21 0.00073 32.5 2.3 28 121-148 7-35 (183)
374 3dm5_A SRP54, signal recogniti 31.3 33 0.0011 37.5 4.1 19 131-149 100-118 (443)
375 2v6i_A RNA helicase; membrane, 31.1 17 0.00058 39.3 1.8 16 133-148 4-19 (431)
376 1uii_A Geminin; human, DNA rep 31.0 2.3E+02 0.0077 23.5 8.7 20 546-565 48-67 (83)
377 1v5w_A DMC1, meiotic recombina 31.0 19 0.00064 37.7 2.0 31 119-149 107-140 (343)
378 1kag_A SKI, shikimate kinase I 30.9 14 0.00048 33.8 0.9 16 133-148 6-21 (173)
379 1lwu_C Fibrinogen gamma chain; 30.8 1E+02 0.0036 32.1 7.6 6 636-641 88-93 (323)
380 1knq_A Gluconate kinase; ALFA/ 30.5 15 0.0005 33.8 1.0 17 132-148 9-25 (175)
381 1z6g_A Guanylate kinase; struc 30.5 14 0.00046 36.0 0.8 15 134-148 26-40 (218)
382 1ik9_A DNA repair protein XRCC 30.5 3.8E+02 0.013 26.0 12.8 81 507-587 130-212 (213)
383 1g8x_A Myosin II heavy chain f 30.4 24 0.00081 42.8 3.0 20 128-147 169-188 (1010)
384 1gm5_A RECG; helicase, replica 30.4 18 0.00062 42.5 1.9 24 125-148 383-406 (780)
385 1jnm_A Proto-oncogene C-JUN; B 30.3 1.9E+02 0.0063 22.3 7.3 30 532-561 24-53 (62)
386 2k48_A Nucleoprotein; viral pr 30.3 2.6E+02 0.009 24.0 8.6 27 551-577 75-101 (107)
387 2l5g_A GPS2 protein, G protein 30.2 1.2E+02 0.004 21.2 5.1 25 538-562 9-33 (38)
388 2r2a_A Uncharacterized protein 30.0 14 0.00048 35.7 0.8 16 133-148 7-22 (199)
389 1vma_A Cell division protein F 30.0 15 0.00051 38.1 1.0 17 132-148 105-121 (306)
390 2ycu_A Non muscle myosin 2C, a 29.9 25 0.00087 42.4 3.2 20 128-147 143-162 (995)
391 3kl4_A SRP54, signal recogniti 29.9 37 0.0013 37.0 4.2 19 131-149 97-115 (433)
392 2z83_A Helicase/nucleoside tri 29.7 18 0.00062 39.4 1.7 15 133-147 23-37 (459)
393 1w7j_A Myosin VA; motor protei 29.6 27 0.00091 41.2 3.2 20 128-147 153-172 (795)
394 3he5_B Synzip2; heterodimeric 29.4 1.6E+02 0.0053 21.1 6.8 22 543-564 23-44 (52)
395 4db1_A Myosin-7; S1DC, cardiac 29.4 27 0.00093 41.0 3.2 21 128-148 168-188 (783)
396 1kk8_A Myosin heavy chain, str 29.2 24 0.00083 41.8 2.7 20 128-147 166-185 (837)
397 4gkw_A Spindle assembly abnorm 29.2 3.1E+02 0.011 24.5 16.8 7 610-616 136-142 (167)
398 3d5a_X RF1, peptide chain rele 29.1 2.5E+02 0.0084 29.6 10.1 24 584-607 70-93 (354)
399 2zj8_A DNA helicase, putative 29.1 15 0.00052 42.4 1.0 22 622-643 633-654 (720)
400 2rhm_A Putative kinase; P-loop 29.1 16 0.00055 33.9 1.0 17 132-148 6-22 (193)
401 1uf9_A TT1252 protein; P-loop, 29.0 20 0.00067 33.6 1.6 21 128-148 5-25 (203)
402 1tev_A UMP-CMP kinase; ploop, 29.0 17 0.00059 33.6 1.2 16 133-148 5-20 (196)
403 2qor_A Guanylate kinase; phosp 28.9 15 0.00051 35.0 0.7 16 133-148 14-29 (204)
404 3cm0_A Adenylate kinase; ATP-b 28.7 17 0.00059 33.6 1.2 16 133-148 6-21 (186)
405 3t5d_A Septin-7; GTP-binding p 28.7 16 0.00054 36.7 0.9 21 128-148 5-25 (274)
406 3haj_A Human pacsin2 F-BAR; pa 28.7 5.9E+02 0.02 27.6 18.4 11 427-437 55-65 (486)
407 1yks_A Genome polyprotein [con 28.6 19 0.00064 39.1 1.6 21 126-148 5-25 (440)
408 1y63_A LMAJ004144AAA protein; 28.6 18 0.0006 33.9 1.2 16 133-148 12-27 (184)
409 1m1j_A Fibrinogen alpha subuni 28.6 6E+02 0.02 27.6 15.5 7 549-555 105-111 (491)
410 3m6a_A ATP-dependent protease 28.4 16 0.00056 40.9 1.1 18 131-148 108-125 (543)
411 1gku_B Reverse gyrase, TOP-RG; 28.2 22 0.00076 43.3 2.2 23 122-146 64-86 (1054)
412 2i1q_A DNA repair and recombin 28.0 22 0.00075 36.6 1.9 31 119-149 83-116 (322)
413 2p6r_A Afuhel308 helicase; pro 27.9 15 0.00052 42.3 0.7 31 108-148 27-57 (702)
414 2dq0_A Seryl-tRNA synthetase; 27.6 2.1E+02 0.0072 31.1 9.8 6 598-603 84-89 (455)
415 1svm_A Large T antigen; AAA+ f 27.5 29 0.00099 37.0 2.8 17 132-148 170-186 (377)
416 1e6c_A Shikimate kinase; phosp 27.5 18 0.0006 33.0 1.0 16 133-148 4-19 (173)
417 2bbw_A Adenylate kinase 4, AK4 27.4 18 0.0006 35.6 1.0 17 132-148 28-44 (246)
418 1a5t_A Delta prime, HOLB; zinc 27.4 24 0.0008 36.7 2.0 34 111-148 7-41 (334)
419 1ses_A Seryl-tRNA synthetase; 27.3 3.4E+02 0.012 29.1 11.3 29 589-617 77-105 (421)
420 3qne_A Seryl-tRNA synthetase, 27.3 2.7E+02 0.0091 30.7 10.5 18 522-539 46-63 (485)
421 1htw_A HI0065; nucleotide-bind 27.3 18 0.00062 33.5 1.0 18 132-149 34-51 (158)
422 3rc3_A ATP-dependent RNA helic 27.2 17 0.00058 42.0 1.0 21 126-148 152-172 (677)
423 3lss_A Seryl-tRNA synthetase; 27.2 2.4E+02 0.0081 31.1 10.0 26 591-616 119-144 (484)
424 2vli_A Antibiotic resistance p 27.0 21 0.0007 32.9 1.4 16 133-148 7-22 (183)
425 4anj_A Unconventional myosin-V 27.0 31 0.0011 41.9 3.2 21 128-148 141-161 (1052)
426 3crm_A TRNA delta(2)-isopenten 26.9 23 0.00079 37.1 1.8 16 132-147 6-21 (323)
427 2z43_A DNA repair and recombin 26.9 20 0.00068 37.1 1.4 30 119-148 92-124 (324)
428 1pzn_A RAD51, DNA repair and r 26.9 23 0.00079 37.2 1.9 30 119-148 116-148 (349)
429 2iut_A DNA translocase FTSK; n 26.7 17 0.00057 41.2 0.8 18 132-149 215-232 (574)
430 4eun_A Thermoresistant glucoki 26.6 19 0.00064 34.2 1.0 16 133-148 31-46 (200)
431 3asz_A Uridine kinase; cytidin 26.5 18 0.00061 34.4 0.8 16 133-148 8-23 (211)
432 3rrk_A V-type ATPase 116 kDa s 26.5 73 0.0025 33.2 5.7 21 610-630 286-306 (357)
433 3m9b_A Proteasome-associated A 26.3 62 0.0021 32.4 4.7 21 563-583 73-93 (251)
434 4dci_A Uncharacterized protein 26.1 3.9E+02 0.013 24.6 11.4 29 580-608 74-102 (150)
435 2iyv_A Shikimate kinase, SK; t 26.0 19 0.00067 33.3 1.0 14 134-147 5-18 (184)
436 2xdj_A Uncharacterized protein 25.9 2.8E+02 0.0095 22.9 10.5 31 535-565 25-55 (83)
437 3tif_A Uncharacterized ABC tra 25.9 20 0.00067 35.5 1.0 16 133-148 33-48 (235)
438 1nks_A Adenylate kinase; therm 25.9 20 0.00068 33.1 1.0 16 133-148 3-18 (194)
439 2wvr_A Geminin; DNA replicatio 25.8 3.9E+02 0.013 25.7 9.9 14 548-561 119-132 (209)
440 2bwj_A Adenylate kinase 5; pho 25.4 20 0.0007 33.4 1.0 16 133-148 14-29 (199)
441 1s96_A Guanylate kinase, GMP k 25.4 20 0.00069 35.0 1.0 16 133-148 18-33 (219)
442 2gno_A DNA polymerase III, gam 25.3 29 0.001 35.7 2.3 28 121-148 8-35 (305)
443 1via_A Shikimate kinase; struc 25.3 20 0.00069 33.0 0.9 15 133-147 6-20 (175)
444 2eyq_A TRCF, transcription-rep 25.3 33 0.0011 42.2 3.0 26 122-147 615-640 (1151)
445 2va8_A SSO2462, SKI2-type heli 25.2 25 0.00084 40.5 1.8 31 109-148 33-63 (715)
446 2pt5_A Shikimate kinase, SK; a 25.2 22 0.00076 32.2 1.2 16 133-148 2-17 (168)
447 3l9o_A ATP-dependent RNA helic 25.0 26 0.0009 42.9 2.1 34 603-636 949-985 (1108)
448 2qmh_A HPR kinase/phosphorylas 24.9 23 0.00078 34.6 1.2 22 127-148 30-51 (205)
449 2zr9_A Protein RECA, recombina 24.9 23 0.00079 37.3 1.4 30 119-148 45-78 (349)
450 3t61_A Gluconokinase; PSI-biol 24.8 21 0.00071 33.7 0.9 16 133-148 20-35 (202)
451 2xgj_A ATP-dependent RNA helic 24.8 23 0.00078 42.9 1.5 32 604-635 852-886 (1010)
452 3a4m_A L-seryl-tRNA(SEC) kinas 24.7 22 0.00077 35.4 1.2 17 132-148 5-21 (260)
453 2k48_A Nucleoprotein; viral pr 24.7 3.4E+02 0.011 23.4 10.8 10 489-498 40-49 (107)
454 1xjc_A MOBB protein homolog; s 24.7 22 0.00074 33.6 1.0 16 133-148 6-21 (169)
455 2q6q_A Spindle POLE BODY compo 24.6 2.6E+02 0.009 22.1 9.0 19 522-540 16-34 (74)
456 2pih_A Protein YMCA; regulate 24.5 3.7E+02 0.013 24.4 9.5 12 549-560 45-56 (151)
457 1gu4_A CAAT/enhancer binding p 24.5 2.9E+02 0.0098 22.5 9.8 33 543-575 35-67 (78)
458 3qks_A DNA double-strand break 24.5 24 0.00084 33.8 1.4 16 133-148 25-40 (203)
459 1ukz_A Uridylate kinase; trans 24.3 24 0.00081 33.3 1.2 17 132-148 16-32 (203)
460 2wt7_A Proto-oncogene protein 24.1 2.5E+02 0.0085 21.6 9.9 28 533-560 26-53 (63)
461 2ius_A DNA translocase FTSK; n 24.1 20 0.00069 40.0 0.8 15 134-148 170-184 (512)
462 1g41_A Heat shock protein HSLU 24.1 21 0.00072 39.1 0.9 14 134-147 53-66 (444)
463 4ddu_A Reverse gyrase; topoiso 23.9 31 0.001 42.3 2.4 24 120-145 84-107 (1104)
464 3o8b_A HCV NS3 protease/helica 23.8 30 0.001 39.9 2.1 18 131-148 232-249 (666)
465 2qag_A Septin-2, protein NEDD5 23.8 19 0.00067 38.0 0.5 25 124-148 30-54 (361)
466 1qf9_A UMP/CMP kinase, protein 23.7 23 0.00079 32.6 1.0 14 133-146 8-21 (194)
467 1cr0_A DNA primase/helicase; R 23.7 23 0.00077 35.8 1.0 28 121-148 23-52 (296)
468 1zd8_A GTP:AMP phosphotransfer 23.7 21 0.00073 34.5 0.8 13 134-146 10-22 (227)
469 2c95_A Adenylate kinase 1; tra 23.6 23 0.0008 32.9 1.0 14 133-146 11-24 (196)
470 1m1j_C Fibrinogen gamma chain; 23.6 7E+02 0.024 26.7 14.5 105 515-619 26-138 (409)
471 3k1j_A LON protease, ATP-depen 23.5 28 0.00097 39.4 1.9 31 116-148 47-77 (604)
472 1zu4_A FTSY; GTPase, signal re 23.5 23 0.00078 36.9 1.0 16 133-148 107-122 (320)
473 1lq7_A Alpha3W; three helix bu 23.4 2.4E+02 0.0081 21.2 6.2 55 486-556 4-67 (67)
474 3a8t_A Adenylate isopentenyltr 23.4 26 0.00088 37.0 1.4 13 133-145 42-54 (339)
475 3aez_A Pantothenate kinase; tr 23.3 33 0.0011 35.4 2.2 25 124-148 75-107 (312)
476 1aky_A Adenylate kinase; ATP:A 23.3 23 0.00079 34.0 1.0 13 134-146 7-19 (220)
477 2yvu_A Probable adenylyl-sulfa 23.3 30 0.001 32.1 1.7 28 119-146 1-28 (186)
478 1pjr_A PCRA; DNA repair, DNA r 23.3 19 0.00065 41.8 0.4 25 124-148 17-41 (724)
479 1sq5_A Pantothenate kinase; P- 23.2 46 0.0016 34.0 3.3 37 112-148 44-97 (308)
480 3ney_A 55 kDa erythrocyte memb 23.1 24 0.00082 34.1 1.0 16 133-148 21-36 (197)
481 2ged_A SR-beta, signal recogni 23.0 24 0.00083 32.5 1.0 16 133-148 50-65 (193)
482 2vhj_A Ntpase P4, P4; non- hyd 23.0 29 0.00098 36.5 1.6 16 131-146 123-138 (331)
483 1zxa_A CGMP-dependent protein 22.9 1.1E+02 0.0038 24.3 4.6 40 519-558 14-53 (67)
484 3fb4_A Adenylate kinase; psych 22.8 24 0.00083 33.6 1.0 13 134-146 3-15 (216)
485 2ce2_X GTPase HRAS; signaling 22.7 22 0.00075 31.4 0.6 15 134-148 6-20 (166)
486 1jjv_A Dephospho-COA kinase; P 22.7 25 0.00084 33.3 1.0 16 133-148 4-19 (206)
487 2zxx_A Geminin; coiled-coil, c 22.7 3.2E+02 0.011 22.4 8.4 55 511-565 22-76 (79)
488 2zts_A Putative uncharacterize 22.7 23 0.0008 34.1 0.8 28 118-145 14-44 (251)
489 3d5a_X RF1, peptide chain rele 22.5 5.6E+02 0.019 26.9 11.3 88 484-571 3-96 (354)
490 1gd2_E Transcription factor PA 22.5 3E+02 0.01 22.0 7.7 57 508-564 14-70 (70)
491 2v0o_A FCHO2, FCH domain only 22.3 5.5E+02 0.019 25.0 21.1 137 473-616 76-222 (276)
492 3qf7_A RAD50; ABC-ATPase, ATPa 22.2 28 0.00095 36.8 1.4 18 131-148 23-40 (365)
493 3f9v_A Minichromosome maintena 22.2 26 0.00091 39.7 1.3 33 116-148 301-344 (595)
494 4a15_A XPD helicase, ATP-depen 22.1 33 0.0011 39.0 2.1 37 105-147 2-38 (620)
495 1c9k_A COBU, adenosylcobinamid 22.1 26 0.00087 33.5 0.9 12 134-145 2-13 (180)
496 1ak2_A Adenylate kinase isoenz 22.1 25 0.00087 34.2 1.0 13 134-146 19-31 (233)
497 3foz_A TRNA delta(2)-isopenten 22.0 28 0.00097 36.2 1.3 13 133-145 12-24 (316)
498 3sr0_A Adenylate kinase; phosp 21.9 26 0.00089 33.9 1.0 13 134-146 3-15 (206)
499 2cdn_A Adenylate kinase; phosp 21.9 30 0.001 32.5 1.4 23 124-146 13-35 (201)
500 3umf_A Adenylate kinase; rossm 21.8 26 0.00087 34.4 0.9 13 134-146 32-44 (217)
No 1
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.3e-97 Score=806.37 Aligned_cols=355 Identities=66% Similarity=1.010 Sum_probs=302.3
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS 91 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (705)
+...++|+|+|||||++..|...+...++.+++..+.|.+.+|.+ .
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~----------------------------------~ 62 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKG----------------------------------T 62 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTC----------------------------------T
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCC----------------------------------C
Confidence 344799999999999999999999999999998888999987731 1
Q ss_pred CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229 92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH 171 (705)
Q Consensus 92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~ 171 (705)
....++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+|+..|||||++++||..
T Consensus 63 ~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~ 142 (372)
T 3b6u_A 63 AHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTH 142 (372)
T ss_dssp TTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHH
Confidence 12346899999999999999999999999999999999999999999999999999999888788889999999999999
Q ss_pred hhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHH
Q psy11229 172 IAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMS 251 (705)
Q Consensus 172 i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~ 251 (705)
+... ....|.|+|||+|||||+|+|||++..... +.+++++++|+||.||+++.|.|++|++.+|.
T Consensus 143 i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~-------------l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~ 208 (372)
T 3b6u_A 143 ISRS-QNQQYLVRASYLEIYQEEIRDLLSKDQTKR-------------LELKERPDTGVYVKDLSSFVTKSVKEIEHVMN 208 (372)
T ss_dssp HHTC-SSCEEEEEEEEEEEETTEEEETTSSCTTCC-------------BCEEEETTTEEEETTCCCEECCSHHHHHHHHH
T ss_pred hhhc-cCCceEEEEEEEEEeCCEEEECCCCCCCCC-------------ceEEECCCCcEecCCCEEEEecCHHHHHHHHH
Confidence 9874 478999999999999999999998765433 45599999999999999999999999999999
Q ss_pred hhhccCccccccCCCCCCCceeEEEEEEEeecCC-CCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcccc
Q psy11229 252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGL-GGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQR 330 (705)
Q Consensus 252 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r 330 (705)
.|.++|++++|.||..|||||+||+|+|++.... .+. ..+..|+|+|||||||||..++++.|.|
T Consensus 209 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~--------------~~~~~skL~lVDLAGSEr~~~t~~~g~r 274 (372)
T 3b6u_A 209 VGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE--------------NHIRVGKLNLVDLAGSERQAKTGAQGER 274 (372)
T ss_dssp HHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----C--------------CCEEEEEEEEEECCCCCE----------
T ss_pred HHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCC--------------cceEEEEEEEEECCCCccccccCcchhh
Confidence 9999999999999999999999999999876521 111 4577899999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229 331 LKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC 410 (705)
Q Consensus 331 lkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 410 (705)
++|+.+||+||++||+||.||++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+
T Consensus 275 l~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~ 354 (372)
T 3b6u_A 275 LKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354 (372)
T ss_dssp EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCB
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999887899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcchHHHHHHH
Q psy11229 411 NKARVNQDPKDALLIKYQ 428 (705)
Q Consensus 411 n~~~~n~~~~~~~l~~~~ 428 (705)
|+|++|+++.++++++||
T Consensus 355 n~~~~n~~~~~~~~~~~~ 372 (372)
T 3b6u_A 355 NKPRVNEDPKDALLREFQ 372 (372)
T ss_dssp CCCCCCC-----------
T ss_pred ccceecCChHHHHHHhcC
Confidence 999999999999998875
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.8e-95 Score=785.25 Aligned_cols=347 Identities=53% Similarity=0.822 Sum_probs=285.9
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
.++|+|+|||||++.+|...++..++.+++.++.|.+.+|..... ......
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~-----------------------------~~~~~~ 53 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKS-----------------------------ATQAKK 53 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC-----------------------------------------
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeecccccc-----------------------------ccccCC
Confidence 589999999999999999999999999998888999887631100 001123
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
.++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|.... .|||||++++||+.+..
T Consensus 54 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~---~Giipr~~~~lF~~i~~ 130 (350)
T 2vvg_A 54 VPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEE---PGAIPNSFKHLFDAINS 130 (350)
T ss_dssp --EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSS---BCHHHHHHHHHHHHHHT
T ss_pred CceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCcc---CchHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999998755 49999999999999987
Q ss_pred cCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhhh
Q psy11229 175 ADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254 (705)
Q Consensus 175 ~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g~ 254 (705)
......|.|+|||+|||||+|+|||++.. .+.+++++.+|+||.||+++.|.|++|++.+|..|.
T Consensus 131 ~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~ 195 (350)
T 2vvg_A 131 SSSNQNFLVIGSYLELYNEEIRDLIKNNT---------------KLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGF 195 (350)
T ss_dssp CCTTEEEEEEEEEEEEETTEEEETTTTEE---------------EECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHH
T ss_pred hccCCcEEEEEEEEEEeCCEEEEcccCCc---------------CceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHH
Confidence 77788999999999999999999997421 256699999999999999999999999999999999
Q ss_pred ccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHHH
Q psy11229 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEA 334 (705)
Q Consensus 255 ~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~ 334 (705)
++|++++|.||..|||||+||+|+|++.....+. ..+..|+|+|||||||||..++++.|+|++|+
T Consensus 196 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~--------------~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~ 261 (350)
T 2vvg_A 196 ANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK--------------EVIRVGKLNLVDLAGSERQSKTGATGETLVEG 261 (350)
T ss_dssp HHC----------CTTCEEEEEEEEEEEEC------------------CEEEEEEEEEEECCCCCC--------------
T ss_pred hccccccccCCCCCCcceEEEEEEEEEeeccCCC--------------ccEEEEEEEEEeCCCCCccccccccHHHHHHH
Confidence 9999999999999999999999999886533222 45678999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229 335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~ 414 (705)
.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|+|.
T Consensus 262 ~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~ 340 (350)
T 2vvg_A 262 AKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPR 340 (350)
T ss_dssp -CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCC
T ss_pred HHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccce
Confidence 999999999999999999976 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchHH
Q psy11229 415 VNQDPKDAL 423 (705)
Q Consensus 415 ~n~~~~~~~ 423 (705)
+|++|++++
T Consensus 341 ~n~~~~~~~ 349 (350)
T 2vvg_A 341 INEDPKDAQ 349 (350)
T ss_dssp CCBSCTTCC
T ss_pred ecCCchhcc
Confidence 999998754
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.1e-95 Score=786.48 Aligned_cols=352 Identities=44% Similarity=0.652 Sum_probs=293.7
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCC--CCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLL--NGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPA 89 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~--~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (705)
....++|+|+|||||++..|...+...++.++.. ..+|.+
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-------------------------------------- 48 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------------------------------- 48 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--------------------------------------
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--------------------------------------
Confidence 3457899999999999999988877666655432 112111
Q ss_pred CCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHH
Q psy11229 90 GSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIF 169 (705)
Q Consensus 90 ~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF 169 (705)
..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...++...|||||++++||
T Consensus 49 -----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF 123 (365)
T 2y65_A 49 -----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIF 123 (365)
T ss_dssp -----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHH
T ss_pred -----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHH
Confidence 137899999999999999999999999999999999999999999999999999998887888899999999999
Q ss_pred HhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229 170 GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI 249 (705)
Q Consensus 170 ~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l 249 (705)
+.+.....+..|.|+|||+|||||+|+|||++... .+.+++++.+++||.||+++.|.|++|++.+
T Consensus 124 ~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~l 189 (365)
T 2y65_A 124 NHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV--------------NLSVHEDKNRVPYVKGATERFVSSPEDVFEV 189 (365)
T ss_dssp HHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCC--------------SBCEEECSSSCEEETTCCCEEECSHHHHHHH
T ss_pred HHHHhccCCceEEEEEEEEEEECCeeeecccCCcC--------------CceEEECCCCCEEecCCEEEecCCHHHHHHH
Confidence 99988777889999999999999999999986532 2456999999999999999999999999999
Q ss_pred HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329 (705)
Q Consensus 250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~ 329 (705)
|..|.++|++++|.||..|||||+||+|+|.+..... .....|+|+|||||||||..++++.|.
T Consensus 190 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~ 253 (365)
T 2y65_A 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN----------------QKKLSGKLYLVDLAGSEKVSKTGAEGT 253 (365)
T ss_dssp HHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCC---------
T ss_pred HHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC----------------CCEeEEEEEEEECCCCCcchhcCCcch
Confidence 9999999999999999999999999999998765322 335679999999999999999999999
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
|++|+.+||+||++||+||.||++++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||+|
T Consensus 254 rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I 333 (365)
T 2y65_A 254 VLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV 333 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcch-HHHHHHHHHHHHHHH
Q psy11229 410 CNKARVNQDPKD-ALLIKYQKEISELKK 436 (705)
Q Consensus 410 ~n~~~~n~~~~~-~~l~~~~~ei~~Lk~ 436 (705)
+|+|.+|+++.. .++++|++|+++|+.
T Consensus 334 ~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 334 KNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp EEECCCEEECCSHHHHHC----------
T ss_pred cCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999865 566778888887764
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.3e-93 Score=769.59 Aligned_cols=339 Identities=49% Similarity=0.751 Sum_probs=307.7
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
+.++|+|+|||||++..|...+...+|.++... .+.+.. .
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~~~~---------------------------------------~ 43 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPD-TCTVDS---------------------------------------K 43 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTT-EEEECS---------------------------------------T
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCC-eEEEcc---------------------------------------C
Confidence 468999999999999999988888887775432 232211 1
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC-CCCCCCCchHHHHHHHHHhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHI 172 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~-~~~~~~GIipr~~~~lF~~i 172 (705)
...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|.. +.++..|||||++++||..+
T Consensus 44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i 123 (355)
T 1goj_A 44 EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123 (355)
T ss_dssp TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHH
T ss_pred CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHH
Confidence 23578999999999999999999999999999999999999999999999999999964 33566799999999999999
Q ss_pred hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
........|.|+|||+|||||+|+|||++... .+.+++++.+|+||.||+++.|.|++|++.+|..
T Consensus 124 ~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------------~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~ 189 (355)
T 1goj_A 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQND--------------NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRR 189 (355)
T ss_dssp HTSCTTEEEEEEEEEEEEETTEEEETTSTTCC--------------SCCEEEETTTEEEETTCCCEECCSHHHHHHHHHH
T ss_pred HhcccCceEEEEEEEEEEECCEEEEcccCccC--------------CceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHH
Confidence 88777889999999999999999999987532 1456999999999999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..++++.|.+++
T Consensus 190 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~ 253 (355)
T 1goj_A 190 GGNARAVAATNMNQESSRSHSIFVITITQKNVET----------------GSAKSGQLFLVDLAGSEKVGKTGASGQTLE 253 (355)
T ss_dssp HHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCSCCTTSSSCCCCTT
T ss_pred HHhhcCcccccCCCCCCCceEEEEEEEEEeccCC----------------CceeeeEEEEEECCCCCcccccccchhhHH
Confidence 9999999999999999999999999998765322 345689999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
|+.+||+||++||+||.||++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|+
T Consensus 254 E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~ 333 (355)
T 1goj_A 254 EAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNK 333 (355)
T ss_dssp TTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchH
Q psy11229 413 ARVNQDPKDA 422 (705)
Q Consensus 413 ~~~n~~~~~~ 422 (705)
|++|+++..+
T Consensus 334 ~~vn~~~~~~ 343 (355)
T 1goj_A 334 AKVNAELSPA 343 (355)
T ss_dssp CCCCSSSSCS
T ss_pred ceeCCCCCHH
Confidence 9999987654
No 5
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.5e-92 Score=766.81 Aligned_cols=347 Identities=38% Similarity=0.606 Sum_probs=304.1
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
..++|+|+|||||++..|...+...++.. .+.-.|.+... .
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~--------------------------------------~ 43 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWK--------------------------------------D 43 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECT--------------------------------------T
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCC--------------------------------------C
Confidence 35899999999999999987665433221 11112221110 1
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
...+.|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|.+..+ |||||++.+||..+.
T Consensus 44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~ 119 (369)
T 3cob_A 44 DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLTPRAMSELFRIMK 119 (369)
T ss_dssp SCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHHH
T ss_pred CCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCC---chhHHHHHHHHHHHH
Confidence 234889999999999999999999 6999999999999999999999999999999987554 999999999999998
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
.......|.|+|||+|||||+|+|||++.... ...+.+++++.++++|.||+++.|.|++|++.+|..|
T Consensus 120 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 188 (369)
T 3cob_A 120 KDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-----------RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRG 188 (369)
T ss_dssp HTTTTEEEEEEEEEEEECSSCEEESSCCSSSC-----------CCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHH
T ss_pred hhccCceeEEEEEEEEEeCceeeecCCCcccC-----------CcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHH
Confidence 87767899999999999999999999875432 1235679999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..++++.|.|++|
T Consensus 189 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E 252 (369)
T 3cob_A 189 SEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----------------QAIARGKLSFVDLAGSERVKKSGSAGNQLKE 252 (369)
T ss_dssp HHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCSSCCCCCSSCSHHHHH
T ss_pred hhcceeecccCCCCCCcceEEEEEEEEEecCCC----------------CcEEEEEEEEEeCCCCCcccccCccchhhHH
Confidence 999999999999999999999999998765322 3467899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~ 413 (705)
+.+||+||++||+||.||++++ .||||||||||+||||+||||++|+|||||||+..+++||++||+||+||++|+|+|
T Consensus 253 ~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~ 331 (369)
T 3cob_A 253 AQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP 331 (369)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999875 799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhh
Q psy11229 414 RVNQDPKDALLIKYQKEISELKKKLEE 440 (705)
Q Consensus 414 ~~n~~~~~~~l~~~~~ei~~Lk~~l~~ 440 (705)
.+|+++ ++|.+|+.+|..
T Consensus 332 ~~n~~~---------~ei~~L~~~l~~ 349 (369)
T 3cob_A 332 SKNVSS---------KEVARLKKLVSY 349 (369)
T ss_dssp CCCEEC---------HHHHHHHHHTTC
T ss_pred cccCCH---------HHHHHHHHHHHH
Confidence 999998 455556665543
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-93 Score=773.04 Aligned_cols=355 Identities=34% Similarity=0.525 Sum_probs=253.2
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS 91 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (705)
+...++|+|+|||||++..|...+...||.+. +...+.+.++ ..
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~----------------------------------~~- 60 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANW----------------------------------RN- 60 (388)
T ss_dssp SSCCCCCEEEEEECCCC---------------------------------------------------------------
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEec-CCCeEEEecC----------------------------------CC-
Confidence 45579999999999999999776655555432 1223333222 10
Q ss_pred CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229 92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH 171 (705)
Q Consensus 92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~ 171 (705)
....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+ |||||++.+||..
T Consensus 61 -~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~---Giipra~~~lF~~ 136 (388)
T 3bfn_A 61 -HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP---GVIPRALMDLLQL 136 (388)
T ss_dssp ---CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSB---CHHHHHHHHHHHH
T ss_pred -CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCcccc---chhHHHHHHHHHH
Confidence 123578999999999999999999999999999999999999999999999999999976554 9999999999999
Q ss_pred hhhc---CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHH
Q psy11229 172 IAKA---DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248 (705)
Q Consensus 172 i~~~---~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ 248 (705)
+... ...+.|.|+|||+|||||+|+|||++... . +.|+|++.++++|.||+++.|.|++|++.
T Consensus 137 i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~-------------l~ired~~~~v~v~gl~~~~V~s~~e~~~ 202 (388)
T 3bfn_A 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-D-------------LVIREDCRGNILIPGLSQKPISSFADFER 202 (388)
T ss_dssp HHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC-B-------------CCCEECTTSCEECTTCCCEECCSHHHHHH
T ss_pred HHHhhccCCCceEEEEEEEEEEECCeeeehhccCCC-C-------------ceEEEcCCCCEEeccceEEEeCCHHHHHH
Confidence 9763 34578999999999999999999987532 1 45699999999999999999999999999
Q ss_pred HHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcc
Q psy11229 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASG 328 (705)
Q Consensus 249 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g 328 (705)
+|..|.++|++++|.||..|||||+||+|+|++.....+ .....|+|+|||||||||..++++.|
T Consensus 203 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~---------------~~~~~skL~lVDLAGSEr~~~t~~~g 267 (388)
T 3bfn_A 203 HFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP---------------FRQREGKLYLIDLAGSEDNRRTGNKG 267 (388)
T ss_dssp HHHHHTC-----------CGGGSEEEEEEEEEEEESSTT---------------CCEEEEEEEEEECCCTTC--------
T ss_pred HHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC---------------CceeEEEEEEEECCCCcccccccCcc
Confidence 999999999999999999999999999999987653221 23467999999999999999999999
Q ss_pred ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhc
Q psy11229 329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408 (705)
Q Consensus 329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~ 408 (705)
.|++|+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+
T Consensus 268 ~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~ 346 (388)
T 3bfn_A 268 LRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKE 346 (388)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEE
T ss_pred chhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999876 6999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcchHHHHHHHHHHHHHHHHHhh
Q psy11229 409 ICNKARVNQDPKDALLIKYQKEISELKKKLEE 440 (705)
Q Consensus 409 I~n~~~~n~~~~~~~l~~~~~ei~~Lk~~l~~ 440 (705)
|+|+|.+|+++....+..++ .++++|..
T Consensus 347 I~n~p~~n~~~~~~~l~~~k----~~~~~l~~ 374 (388)
T 3bfn_A 347 VINRPFTNESLQPHALGPVK----LSQKELLG 374 (388)
T ss_dssp EC------------------------------
T ss_pred CcCcCcccCCCCHHHHHHHH----HHHHHhhC
Confidence 99999999998876555433 34444443
No 7
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.4e-92 Score=781.81 Aligned_cols=368 Identities=41% Similarity=0.627 Sum_probs=289.3
Q ss_pred ccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229 11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG 90 (705)
Q Consensus 11 ~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (705)
..+..++|+|+|||||++++|...+...++.+++....+++..|......... +. ..
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------g~------~~ 89 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADAR-----------------GA------RS 89 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC-----------------------------------
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCccccccc-----------------cc------cc
Confidence 34557899999999999999999898889999988888888766321000000 00 00
Q ss_pred CCCCCCeeEeeceeeCC-------CCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHH
Q psy11229 91 SAHEPPKTFTFDTVFDA-------NSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPN 163 (705)
Q Consensus 91 ~~~~~~~~F~FD~Vf~~-------~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr 163 (705)
......+.|+||+||++ .++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+ |||||
T Consensus 90 ~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~---GIipr 166 (443)
T 2owm_A 90 RRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQP---GLIPR 166 (443)
T ss_dssp ---CCCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSC---CHHHH
T ss_pred ccccCCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCC---chHHH
Confidence 01123689999999976 489999999999999999999999999999999999999999976554 99999
Q ss_pred HHHHHHHhhhhc---CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEc
Q psy11229 164 SFAHIFGHIAKA---DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIA 240 (705)
Q Consensus 164 ~~~~lF~~i~~~---~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v 240 (705)
++++||..|... ..+..|.|+|||+|||||+|+|||++.... .....+.|+|++.+|+||.||+++.|
T Consensus 167 ~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~---------~~~~~l~ire~~~~g~~V~gl~e~~V 237 (443)
T 2owm_A 167 TCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPN---------KPPYYLKVRESPTEGPYVKDLTEVPV 237 (443)
T ss_dssp HHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSS---------CCCCCCEEEEETTTEEEEETCCCEEC
T ss_pred HHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccC---------CcccccceeECCCCCEeccCCEEEEc
Confidence 999999999865 246899999999999999999999874321 01223677999999999999999999
Q ss_pred CCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCcc
Q psy11229 241 NNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER 320 (705)
Q Consensus 241 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 320 (705)
.|++|++.+|..|.++|++++|.||..|||||+||+|+|++....... .......|+|+|||||||||
T Consensus 238 ~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSER 305 (443)
T 2owm_A 238 RGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLET------------DDTTERSSRIRLVDLAGSER 305 (443)
T ss_dssp CSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------------------CCEEEEEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCC------------CCcceEEEEEEEEECCCCcc
Confidence 999999999999999999999999999999999999999875421100 11345689999999999999
Q ss_pred ccccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCC---------------------CCccCCCCcchhhhhccCCCCcc
Q psy11229 321 QAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC---------------------THIPYRNSKLTRILQDSLGGNSK 379 (705)
Q Consensus 321 ~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~---------------------~hVPyRdSkLTrLLqdsLgGnsk 379 (705)
..++++.|+|++|+.+||+||++||+||.||++++. .|||||||||||||||+||||++
T Consensus 306 ~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnsk 385 (443)
T 2owm_A 306 AKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSK 385 (443)
T ss_dssp --------------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCE
T ss_pred ccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCc
Confidence 999999999999999999999999999999987542 39999999999999999999999
Q ss_pred eeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccC-CcchHHHHHH
Q psy11229 380 TVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ-DPKDALLIKY 427 (705)
Q Consensus 380 t~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~-~~~~~~l~~~ 427 (705)
|+|||||||+ +|+||++||+||+|||+|+|+|.+|+ |+.++..++.
T Consensus 386 T~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~~~~~ 432 (443)
T 2owm_A 386 TAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDA 432 (443)
T ss_dssp EEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC----------
T ss_pred EEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccHHHHHH
Confidence 9999999997 59999999999999999999999999 7777665543
No 8
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.1e-92 Score=761.70 Aligned_cols=339 Identities=45% Similarity=0.677 Sum_probs=289.3
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
+.++|+|+|||||++..|...+...++.+...+..|...
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~----------------------------------------- 40 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV----------------------------------------- 40 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-----------------------------------------
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-----------------------------------------
Confidence 468999999999999999877765555444333332211
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+ |||||++++||..+.
T Consensus 41 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~ 117 (349)
T 1t5c_A 41 DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHL---GVIPRAIHDIFQKIK 117 (349)
T ss_dssp TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHGG
T ss_pred CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCC---chHHHHHHHHHHHHH
Confidence 12478999999999999999999999999999999999999999999999999999976554 999999999999998
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
... +..|.|+|||+|||||+|+|||++.... ..+.|+|++.+++||.||+++.|.|++|++.+|..|
T Consensus 118 ~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g 184 (349)
T 1t5c_A 118 KFP-DREFLLRVSYMEIYNETITDLLCGTQKM------------KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG 184 (349)
T ss_dssp GCT-TEEEEEEEEEEEEETTEEEESSSSSCTT------------CCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHH
T ss_pred hCc-CCcEEEEEEEEEEeCCEEEEccCCCCCC------------CCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHh
Confidence 754 6789999999999999999999875421 125679999999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
.++|++++|.||..|||||+||+|.|++.....+.. ..+.+..|+|+|||||||||..++++.|.|++|
T Consensus 185 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-----------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E 253 (349)
T 1t5c_A 185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN-----------CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKE 253 (349)
T ss_dssp HHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC------------------CEEEEEEEEEECCCGGGTC-------CCCS
T ss_pred hcccccccccCCCCCCCceEEEEEEEEEeccCCCcC-----------cCccEEEEEEEEEECCCCccccccCCccccchh
Confidence 999999999999999999999999998865322110 114567899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCC-CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~-~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+
T Consensus 254 ~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~ 331 (349)
T 1t5c_A 254 GCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNT 331 (349)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCC
T ss_pred hhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999875 3699999999999999999999999999999997 589999999999999999999
Q ss_pred ccccCCcchH
Q psy11229 413 ARVNQDPKDA 422 (705)
Q Consensus 413 ~~~n~~~~~~ 422 (705)
|.+|+++...
T Consensus 332 ~~vn~~~~~~ 341 (349)
T 1t5c_A 332 PYVNEVSTDE 341 (349)
T ss_dssp CCCCEEC---
T ss_pred ceeccCCCCC
Confidence 9999998755
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=6.6e-93 Score=768.97 Aligned_cols=345 Identities=47% Similarity=0.719 Sum_probs=285.2
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS 91 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (705)
.+..++|+|+|||||++..|...+...++.+++....|.+..+.. .
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~----------------------------------~ 49 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL----------------------------------A 49 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE----------------------------------T
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc----------------------------------c
Confidence 345799999999999999999988888999988777777754200 0
Q ss_pred CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCC--------CCCCchHH
Q psy11229 92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVP--------ELKGIIPN 163 (705)
Q Consensus 92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~--------~~~GIipr 163 (705)
.....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+ ...|||||
T Consensus 50 ~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr 129 (359)
T 1x88_A 50 DKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 129 (359)
T ss_dssp TEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHH
T ss_pred CCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHH
Confidence 0112578999999999999999999999999999999999999999999999999999976421 23699999
Q ss_pred HHHHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCC--CcEEEccceEEEcC
Q psy11229 164 SFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD--IGVYVKDLSAYIAN 241 (705)
Q Consensus 164 ~~~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~--~gv~v~~l~~~~v~ 241 (705)
++++||+.+.. .+..|.|+|||+|||||+|+|||++..... ..+.+++++. +|++|.||+++.|.
T Consensus 130 ~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~-----------~~l~i~~~~~~~~~v~v~gl~~~~v~ 196 (359)
T 1x88_A 130 TLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLNPSSDVS-----------ERLQMFDDPRNKRGVIIKGLEEITVH 196 (359)
T ss_dssp HHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEETTCTTSCTT-----------CCBEEEEETTEEEEEEEETCCCEEEC
T ss_pred HHHHHHHHHhc--cCceEEEEEEEEEEeCceeeehhccccccc-----------ccceEEeccCCCCCEEEcCCEEEEcC
Confidence 99999999876 368899999999999999999998764321 1255688874 78999999999999
Q ss_pred CHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCCCcc
Q psy11229 242 NADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSER 320 (705)
Q Consensus 242 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 320 (705)
|++|++.+|..|.++|++++|.||..|||||+||+|+|+.... .++. ..+..|+|+|||||||||
T Consensus 197 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~--------------~~~~~skL~lVDLAGSEr 262 (359)
T 1x88_A 197 NKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE--------------ELVKIGKLNLVDLAGSEN 262 (359)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSC--------------EEEEEEEEEEEECCCCCC
T ss_pred CHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCC--------------ceEEEEEEEEEcCCCCCc
Confidence 9999999999999999999999999999999999999987542 2221 345689999999999999
Q ss_pred ccccCCccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHH
Q psy11229 321 QAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTL 400 (705)
Q Consensus 321 ~~~t~~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTL 400 (705)
..++++.|.|++|+.+||+||++||+||.||+++. .|||||||||||||||+||||++|+|||||||+..+++||++||
T Consensus 263 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TL 341 (359)
T 1x88_A 263 IGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTL 341 (359)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHH
T ss_pred ccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHH
Confidence 99999999999999999999999999999999865 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCC
Q psy11229 401 RYASRVKKICNKARVNQD 418 (705)
Q Consensus 401 rfa~rak~I~n~~~~n~~ 418 (705)
+||+|||+|+|+|.+|++
T Consensus 342 rfA~rak~I~n~p~vn~~ 359 (359)
T 1x88_A 342 EYAHRAKNILNKPEVNQK 359 (359)
T ss_dssp HHHHHHTTCCCCCC----
T ss_pred HHHHHHhhccCcceeCCC
Confidence 999999999999999974
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.2e-91 Score=754.73 Aligned_cols=348 Identities=41% Similarity=0.632 Sum_probs=265.4
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS 91 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (705)
....++|+|+|||||++.+|...++..+|.+.. +.+.+.+|..... .+......... + ...
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~d~~~~~~------~~~~~~~~~~~----------~-~~~ 66 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVD--KHILVFDPKQEEV------SFFHGKKTTNQ----------N-VIK 66 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECS--SSEEEEC--------------------------------------
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecC--CceEEecCCCCcc------eeecccccccc----------c-chh
Confidence 344799999999999999999999998888753 3455555531100 00000000000 0 000
Q ss_pred CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229 92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH 171 (705)
Q Consensus 92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~ 171 (705)
.....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|....| |||||++.+||..
T Consensus 67 ~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~lf~~ 143 (355)
T 3lre_A 67 KQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP---GVMYLTMLHLYKC 143 (355)
T ss_dssp ---CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSB---CHHHHHHHHHHHH
T ss_pred ccCCCceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCC---CeeehhhhHHHHh
Confidence 1234678999999999999999999999999999999999999999999999999999987665 9999999999999
Q ss_pred hhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHH
Q psy11229 172 IAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMS 251 (705)
Q Consensus 172 i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~ 251 (705)
+........|.|+|||+|||||+|+|||++.. .+.+++++..|++|.||+++.|.|++|++.+|.
T Consensus 144 i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------------~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~ 208 (355)
T 3lre_A 144 MDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG---------------PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLD 208 (355)
T ss_dssp HHHTTTTEEEEEEEEEEEEETTEEEESSSCCC---------------CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHH
T ss_pred hhhhccCceEEEEEEEEEEECCEEEECcCCCC---------------CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHH
Confidence 99877788999999999999999999998642 156699999999999999999999999999999
Q ss_pred hhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccH
Q psy11229 252 LGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRL 331 (705)
Q Consensus 252 ~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl 331 (705)
.|.++|++++|.||..|||||+||+|+|++....... ...+..|+|+|||||||||..++++.|.|+
T Consensus 209 ~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~-------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl 275 (355)
T 3lre_A 209 NGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASI-------------NQNVRIAKMSLIDLAGSERASTSGAKGTRF 275 (355)
T ss_dssp HHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCT-------------TCCCCCEEEEEEECCCCCC-----------
T ss_pred HHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCC-------------CCCEEEEEEEEEECCCCCcCcCCCCccHHH
Confidence 9999999999999999999999999999886532211 134678999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 332 KEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 332 kE~~~IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
+|+.+||+||++||+||.||++++ ..|||||||||||||||+|||||+|+|||||||+..+|+||++||+||+|||+|
T Consensus 276 ~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 276 VEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp ------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999998854 369999999999999999999999999999999999999999999999999986
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.6e-91 Score=748.65 Aligned_cols=322 Identities=47% Similarity=0.692 Sum_probs=294.6
Q ss_pred CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
...++|+|+|||||+++.|...+...++.+.. ++.|.+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~----------------------------------------- 41 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVI----------------------------------------- 41 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEE-----------------------------------------
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEE-----------------------------------------
Confidence 34689999999999999998888777666543 223322
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI 172 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i 172 (705)
..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+|+..|||||++.+||+.+
T Consensus 42 --~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i 119 (325)
T 1bg2_A 42 --ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 119 (325)
T ss_dssp --TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHH
T ss_pred --CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHH
Confidence 136899999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
.....+..|.|+|||+|||||+|+|||++... .+.+++++.++++|.||+++.|.|++|++.+|..
T Consensus 120 ~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~--------------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~ 185 (325)
T 1bg2_A 120 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT--------------NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDE 185 (325)
T ss_dssp HHHCSSEEEEEEEEEEEEETTEEEESSCTTCC--------------SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHH
T ss_pred HhccCCceEEEEEEEEEEecCeeeecccCCCC--------------CceEEECCCCCEEecCceEEeCCCHHHHHHHHHH
Confidence 88777899999999999999999999986532 2456999999999999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|++..... .....|+|+|||||||||.+++++.|.|++
T Consensus 186 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skl~lVDLAGSEr~~~t~~~g~rl~ 249 (325)
T 1bg2_A 186 GKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----------------EQKLSGKLYLVDLAGSEKVSKTGAEGAVLD 249 (325)
T ss_dssp HHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCSCCCCCCSSSCTTSC
T ss_pred HHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC----------------CcEEEEEEEEEECCCCCcccccCCccccch
Confidence 9999999999999999999999999998765321 335679999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
|+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|
T Consensus 250 E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 250 EAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 99999999999999999999875 79999999999999999999999999999999999999999999999999986
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4e-91 Score=756.80 Aligned_cols=340 Identities=44% Similarity=0.695 Sum_probs=283.5
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
.++|+|+|||||++..|...+...++.++. +.+.+.+|.. ...
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~i~~~~~-----------------------------------~~~ 45 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSG--STTTIVNPKQ-----------------------------------PKE 45 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEET--TEEEECCTTC-----------------------------------TTS
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECC--CcEEEeccCC-----------------------------------CCC
Confidence 579999999999999999888887877763 4566655520 022
Q ss_pred CCeeEeeceeeCCC--------CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHH
Q psy11229 95 PPKTFTFDTVFDAN--------SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFA 166 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~--------~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~ 166 (705)
..+.|+||+||+++ ++|++||+.++.|+|+++|+|||+||||||||||||||||+|... ++..|||||+++
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~ 124 (366)
T 2zfi_A 46 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCE 124 (366)
T ss_dssp CCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHH
T ss_pred CceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHH
Confidence 46899999999987 899999999999999999999999999999999999999999753 234699999999
Q ss_pred HHHHhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHH
Q psy11229 167 HIFGHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245 (705)
Q Consensus 167 ~lF~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e 245 (705)
+||..+.... ....|.|+|||+|||||+|+|||++..... +.|++++..|+||.||+++.|.|++|
T Consensus 125 ~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~-------------l~ire~~~~g~~v~gl~~~~V~s~~e 191 (366)
T 2zfi_A 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN-------------LRVREHPLLGPYVEDLSKLAVTSYND 191 (366)
T ss_dssp HHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSC-------------BCEEEETTTEEEETTCCCEECCSHHH
T ss_pred HHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCC-------------ceEEEcCCCCEEEeCCEEEEECCHHH
Confidence 9999998653 467899999999999999999998765433 45599999999999999999999999
Q ss_pred HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325 (705)
Q Consensus 246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~ 325 (705)
++.+|..|.++|++++|.||..|||||+||+|+|++....... .......|+|+|||||||||..+++
T Consensus 192 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~ 259 (366)
T 2zfi_A 192 IQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET------------NITTEKVSKISLVDLAGSERADSTG 259 (366)
T ss_dssp HHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT------------TCEEEEEEEEEEEECCCGGGC----
T ss_pred HHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC------------CccceeEeEEEEEeCCCCccccccC
Confidence 9999999999999999999999999999999999876422111 0023567999999999999999999
Q ss_pred CccccHHHHHHhhhhHHHHHHHHHHHhcC-----------CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHH
Q psy11229 326 ASGQRLKEASKINLSLSTLGNVISALVDG-----------KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYE 394 (705)
Q Consensus 326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~-----------~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ 394 (705)
+.|.|++|+.+||+||++||+||.||+++ +..|||||||||||||||+||||++|+|||||||+..+++
T Consensus 260 ~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 339 (366)
T 2zfi_A 260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYD 339 (366)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHH
T ss_pred CCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHH
Confidence 99999999999999999999999999873 3479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccC
Q psy11229 395 ETISTLRYASRVKKICNKARVNQ 417 (705)
Q Consensus 395 ETlsTLrfa~rak~I~n~~~~n~ 417 (705)
||++||+||+|||+|+|+|.++.
T Consensus 340 ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 340 ETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHhhccCCCCCCC
Confidence 99999999999999999998864
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-91 Score=760.62 Aligned_cols=344 Identities=42% Similarity=0.674 Sum_probs=282.1
Q ss_pred hcccCCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCC
Q psy11229 9 VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNP 88 (705)
Q Consensus 9 ~~~~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 88 (705)
.......++|+|+|||||++..|...+...+|.+... ..+.+..+.
T Consensus 16 ~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~--------------------------------- 61 (373)
T 2wbe_C 16 QPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGP-REVVTRHTL--------------------------------- 61 (373)
T ss_dssp --CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETT-TEEEESSSS---------------------------------
T ss_pred CCCcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCC-CeEEEecCC---------------------------------
Confidence 3444567899999999999999988777777776533 334333220
Q ss_pred CCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC--------CCCCCCc
Q psy11229 89 AGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN--------VPELKGI 160 (705)
Q Consensus 89 ~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~--------~~~~~GI 160 (705)
.....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|... .+...||
T Consensus 62 ---~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Gi 138 (373)
T 2wbe_C 62 ---DSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGI 138 (373)
T ss_dssp ---SSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCH
T ss_pred ---CCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcC
Confidence 01235889999999999999999999999999999999999999999999999999999764 2346799
Q ss_pred hHHHHHHHHHhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC--CCcEEEccceEE
Q psy11229 161 IPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP--DIGVYVKDLSAY 238 (705)
Q Consensus 161 ipr~~~~lF~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~--~~gv~v~~l~~~ 238 (705)
|||++++||+.+... ...|.|+|||+|||||+|+|||++.....+ .+++++ .++++|.||+++
T Consensus 139 ipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l-------------~i~~~~~~~g~v~v~gl~~~ 203 (373)
T 2wbe_C 139 IPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTDDTTKI-------------RIFDDSTKKGSVIIQGLEEI 203 (373)
T ss_dssp HHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTTSCSCC-------------CEEECSSSSSCEEETTCCCE
T ss_pred hHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCCCCCCc-------------eeEeccCCCCcEEecCceEE
Confidence 999999999999765 468999999999999999999987644333 346663 578999999999
Q ss_pred EcCCHHHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecC-CCCccccCcchhhhhhccCceeeeeEEEEecCC
Q psy11229 239 IANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSG-LGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317 (705)
Q Consensus 239 ~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAG 317 (705)
.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|+.... ..+. .....|+|+||||||
T Consensus 204 ~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~--------------~~~~~skL~lVDLAG 269 (373)
T 2wbe_C 204 PVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE--------------DMLKIGKLNLVDLAG 269 (373)
T ss_dssp EESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTC--------------CEEEEEEEEEEECCC
T ss_pred ccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCC--------------cceeEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999987542 1121 346789999999999
Q ss_pred CccccccCCc-cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHH
Q psy11229 318 SERQAKTGAS-GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEET 396 (705)
Q Consensus 318 SEr~~~t~~~-g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ET 396 (705)
|||..++++. |.|++|+.+||+||++||+||.||+++. .|||||||||||||||+||||++|+|||||||+..+++||
T Consensus 270 SEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ET 348 (373)
T 2wbe_C 270 SENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEET 348 (373)
T ss_dssp C--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHH
T ss_pred CCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHH
Confidence 9999999987 9999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccCCc
Q psy11229 397 ISTLRYASRVKKICNKARVNQDP 419 (705)
Q Consensus 397 lsTLrfa~rak~I~n~~~~n~~~ 419 (705)
++||+||+|||+|+|+|.+|++.
T Consensus 349 lsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 349 LSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHHHHHHHHHHTCEECCCCCEEC
T ss_pred HHHHHHHHHHhhccccceecccc
Confidence 99999999999999999999864
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1e-89 Score=741.21 Aligned_cols=332 Identities=42% Similarity=0.658 Sum_probs=270.6
Q ss_pred CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
.+.++|+|+|||||++++|...+...|+.+++..+.+.+.
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 47 (344)
T 4a14_A 8 AEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG---------------------------------------- 47 (344)
T ss_dssp -CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET----------------------------------------
T ss_pred ccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec----------------------------------------
Confidence 3578999999999999999988888888887766555442
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCC---CCCCCchHHHHHHHH
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIF 169 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~~~~GIipr~~~~lF 169 (705)
..+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|.... ++..|||||++++||
T Consensus 48 --~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF 125 (344)
T 4a14_A 48 --RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAF 125 (344)
T ss_dssp --TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHH
T ss_pred --ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHH
Confidence 147899999999999999999999999999999999999999999999999999997421 345699999999999
Q ss_pred HhhhhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229 170 GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI 249 (705)
Q Consensus 170 ~~i~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l 249 (705)
..+... ....|.|+|||+|||||+|+|||++.... ..+.+++++.++++|.||+++.|.|++|++.+
T Consensus 126 ~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~l 192 (344)
T 4a14_A 126 KLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTAS------------RDIQLREDERGNVVLCGVKEVDVEGLDEVLSL 192 (344)
T ss_dssp HHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCG------------GGCEEEECTTSCEEEESCCCEECCSHHHHHHH
T ss_pred Hhcccc-cceeeEEEEehhhhhHHHHHHHHHhcccc------------ccceeeeccCCCEEEEeeeeccccCHHHHHHH
Confidence 999876 46899999999999999999999865321 12567999999999999999999999999999
Q ss_pred HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329 (705)
Q Consensus 250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~ 329 (705)
|..|.++|++++|.||..|||||+||+|+|++........ .....+.+..|+|+|||||||||..++++.|.
T Consensus 193 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~--------~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~ 264 (344)
T 4a14_A 193 LEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL--------PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE 264 (344)
T ss_dssp HHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------------------CEEEEEEEEEECCCCCCC--------
T ss_pred HHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccC--------CCccccceeeeeeeEEecccchhhcccCCchh
Confidence 9999999999999999999999999999998865221110 00112457789999999999999999999999
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHhcC--CCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 330 RLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 330 rlkE~~~IN~SL~aL~~vI~aL~~~--~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
|++|+.+||+||++||+||.||+++ +..|||||||||||||||+||||++|+|||||||+..+|+||++||+||+|||
T Consensus 265 rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 265 RLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp ------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999875 34699999999999999999999999999999999999999999999999996
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.7e-90 Score=736.34 Aligned_cols=326 Identities=40% Similarity=0.647 Sum_probs=277.4
Q ss_pred CCCeEEEEEcCCCCCccccCC-CcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAG-HVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~-~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
.++|+|+|||||++..|...+ ...++.+++.++.+....+ .
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~ 44 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH--------------------------------------K 44 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE--------------------------------------T
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC--------------------------------------C
Confidence 589999999999999987543 3345666544332221111 1
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
..++.|+||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|...+| |||||++++||..+.
T Consensus 45 ~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~lF~~i~ 120 (330)
T 2h58_A 45 GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---GINQRALQLLFSEVQ 120 (330)
T ss_dssp TEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSB---CHHHHHHHHHHHHHH
T ss_pred CCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCC---cHHHHHHHHHHHhhh
Confidence 1257899999999999999999985 899999999999999999999999999999976554 999999999999998
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
.......|.|+|||+|||||+|+|||++.+...+.+ .+.+++.++++|.||+++.|.|++|++.+|..|
T Consensus 121 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i-----------~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 189 (330)
T 2h58_A 121 EKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI-----------RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFG 189 (330)
T ss_dssp TSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC-----------EECTTSSCCEECTTCCCEEECSHHHHHHHHHHH
T ss_pred cccCCceEEEEEEEEEEECCChhhcccccccccceE-----------EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHH
Confidence 877788999999999999999999998764433322 234678899999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..++++.|.|++|
T Consensus 190 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E 253 (330)
T 2h58_A 190 HTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST----------------GLRTTGKLNLVDLAGSERVGKSGAEGSRLRE 253 (330)
T ss_dssp HHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCCCCC------HHHHH
T ss_pred HhhCCcccccCCCCcCCccEEEEEEEEEEecCC----------------CcEEEEEEEEEeCCCCCcccccCCchhhhHH
Confidence 999999999999999999999999998765322 3456899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC 410 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 410 (705)
+.+||+||++||+||.||+++. .||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||+|+
T Consensus 254 ~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 254 AQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred HHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999865 799999999999999999999999999999999999999999999999999985
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-89 Score=742.69 Aligned_cols=339 Identities=38% Similarity=0.566 Sum_probs=268.6
Q ss_pred CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
...++|||||||||++..|.. ++.+..+...|.+..+..... + .+ ..
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~---------------------~--~~-----~~ 67 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRR---------------------G--VV-----NN 67 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSH---------------------H--HH-----TT
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCcccc---------------------c--cc-----cC
Confidence 446899999999999877643 455666667777776531100 0 00 01
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI 172 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i 172 (705)
....++|+||+||+ +++|++||+.++.|+|+++|+|||+||||||||||||||||+|...+++..|||||++++||+.+
T Consensus 68 ~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~ 146 (359)
T 3nwn_A 68 QQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMI 146 (359)
T ss_dssp SCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHH
T ss_pred CcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHh
Confidence 23457899999997 68999999999999999999999999999999999999999998877777899999999999998
Q ss_pred hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
.... ...|.|+|||+|||||+|+|||++.+.... ....+.+++++ .|++|.|++++.|.+++|++.+|..
T Consensus 147 ~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~--------~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~ 216 (359)
T 3nwn_A 147 EERP-THAITVRVSYLEIYNESLFDLLSTLPYVGP--------SVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFE 216 (359)
T ss_dssp HTCT-TSCEEEEEEEEEEETTEEEETTSSSTTSCT--------TTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHH
T ss_pred hcCC-CCcEEEEEEEEEEecccccccccccccccc--------ccccceEEecC-CceEEeccEEEEecCHHHHHHHHHh
Confidence 7754 678999999999999999999987543211 11224456666 4799999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|+......+. .....|+|+|||||||||..++++.|+|++
T Consensus 217 g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~--------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~ 282 (359)
T 3nwn_A 217 GETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE--------------EKYITSKINLVDLAGSERLGKSGSEGQVLK 282 (359)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------------------CCEEEEEEEEECCCCC-------------
T ss_pred hhhhcccccccCccccCcceEEEEEEEEeecccccC--------------cccccccceeeeccccccccccCCchhHHH
Confidence 999999999999999999999999999876532222 446689999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
|+.+||+||++||+||.||++++..|||||||||||||||+|||||+|+|||||||+..+|+||++||+||+|||+|
T Consensus 283 E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 283 EATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp ---CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999987
No 17
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=8.6e-89 Score=735.51 Aligned_cols=335 Identities=46% Similarity=0.706 Sum_probs=262.9
Q ss_pred CCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCC
Q psy11229 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEP 95 (705)
Q Consensus 16 ~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 95 (705)
.+|+|+|||||++.+|...+...++.++. +.+.+..|.... +.......
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~--~~~~~~~~~~~~-----------------------------~~~~~~~~ 49 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA--NKVILNPVNTNL-----------------------------SKGDARGQ 49 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEET--TEEEECCC----------------------------------------C
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCC--CeEEEeCCcccc-----------------------------ccccccCC
Confidence 47999999999999999888888888763 455554331000 00111334
Q ss_pred CeeEeeceee--------CCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHH
Q psy11229 96 PKTFTFDTVF--------DANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAH 167 (705)
Q Consensus 96 ~~~F~FD~Vf--------~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~ 167 (705)
++.|+||+|| ++.++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+ |||||++++
T Consensus 50 ~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~---Giipr~~~~ 126 (354)
T 3gbj_A 50 PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP---GLIPRLCSG 126 (354)
T ss_dssp CEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSB---CHHHHHHHH
T ss_pred ceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCC---chhhHHHHH
Confidence 7899999999 45689999999999999999999999999999999999999999987655 999999999
Q ss_pred HHHhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHH
Q psy11229 168 IFGHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246 (705)
Q Consensus 168 lF~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~ 246 (705)
||..+... .....|.|+|||+|||||+|+|||++.... ..+.++|++..|+||.||+++.|.|++|+
T Consensus 127 lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~ 194 (354)
T 3gbj_A 127 LFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSR------------QTLKVREHSVLGPYVDGLSKLAVTSYKDI 194 (354)
T ss_dssp HHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------------------CBCBC------CCBTTCCCEEECSHHHH
T ss_pred HHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCC------------cceEEEEcCCCCEEEEeeEEEecCCHHHH
Confidence 99998754 346789999999999999999999875321 12456999999999999999999999999
Q ss_pred HHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCC
Q psy11229 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGA 326 (705)
Q Consensus 247 ~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~ 326 (705)
+.+|..|.++|++++|.||..|||||+||+|+|++....... .......|+|+|||||||||..++++
T Consensus 195 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~~ 262 (354)
T 3gbj_A 195 ESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS------------GTSGEKVGKLSLVDLAGSERATKTGA 262 (354)
T ss_dssp HHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTS------------CEEEEEEEEEEEEECCCCCCCCCCC-
T ss_pred HHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCC------------CCCCeeEEEEEEEECCCCCchhhcCC
Confidence 999999999999999999999999999999999875311100 01345689999999999999999999
Q ss_pred ccccHHHHHHhhhhHHHHHHHHHHHhc-----CCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHH
Q psy11229 327 SGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLR 401 (705)
Q Consensus 327 ~g~rlkE~~~IN~SL~aL~~vI~aL~~-----~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLr 401 (705)
.|+|++|+.+||+||++||+||.||++ ++..|||||||||||||||+||||++|+|||||||+..+|+|||+|||
T Consensus 263 ~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr 342 (354)
T 3gbj_A 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLR 342 (354)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred ccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHH
Confidence 999999999999999999999999986 345799999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy11229 402 YASRVKK 408 (705)
Q Consensus 402 fa~rak~ 408 (705)
||.||+.
T Consensus 343 ~a~~~~~ 349 (354)
T 3gbj_A 343 YADRAKH 349 (354)
T ss_dssp HHHHHC-
T ss_pred HHHHhhh
Confidence 9999985
No 18
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-88 Score=735.36 Aligned_cols=343 Identities=37% Similarity=0.540 Sum_probs=254.3
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEe------CCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVD------LLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKN 87 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~------~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (705)
..++|||||||||+++.|...++..++... ..+..|.+..|..... .+.
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~- 74 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRG------------------------TLS- 74 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC----------------------------------
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCcccc------------------------ccc-
Confidence 368999999999999999876543221111 2334455543311000 000
Q ss_pred CCCCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC-CCCCCCchHHHHH
Q psy11229 88 PAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN-VPELKGIIPNSFA 166 (705)
Q Consensus 88 ~~~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~-~~~~~GIipr~~~ 166 (705)
........+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|... .++..|||||+++
T Consensus 75 -~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~ 152 (376)
T 2rep_A 75 -GAPAPPPRHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALR 152 (376)
T ss_dssp ---------CEEECSEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHH
T ss_pred -cccCCCCceeeeecEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHH
Confidence 000112357899999999999999999986 5899999999999999999999999999999764 3456799999999
Q ss_pred HHHHhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec--CCCcEEEccceEEEcCCH
Q psy11229 167 HIFGHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER--PDIGVYVKDLSAYIANNA 243 (705)
Q Consensus 167 ~lF~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~gv~v~~l~~~~v~s~ 243 (705)
+||..+.... ..+.|.|+|||+|||||+|+|||++..... ....+.++++ +.++++|.||+++.|.++
T Consensus 153 ~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~---------~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~ 223 (376)
T 2rep_A 153 HLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKG---------QGGECEIRRAGPGSEELTVTNARYVPVSCE 223 (376)
T ss_dssp HHHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC-----------------CCEEEC---CCCEEETTCCCEEECSH
T ss_pred HHHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccc---------cCCCceEEeccCCCCCEEECCcEEEEeCCH
Confidence 9999998643 467999999999999999999998753210 0112455777 678999999999999999
Q ss_pred HHHHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccc
Q psy11229 244 DDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAK 323 (705)
Q Consensus 244 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~ 323 (705)
+|++.+|..|.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..+
T Consensus 224 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~ 287 (376)
T 2rep_A 224 KEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSR----------------GLQCGAPLSLVDLAGSERLDP 287 (376)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSS----------------CCEEEEEEEEEECCCCC----
T ss_pred HHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC----------------CcEEEeEEEEEECCCCccccc
Confidence 9999999999999999999999999999999999998765322 335679999999999999999
Q ss_pred cCCcc----ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHH
Q psy11229 324 TGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETIST 399 (705)
Q Consensus 324 t~~~g----~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsT 399 (705)
+++.| +|++|+.+||+||++||+||.||++++ .|||||||||||||||+||||++|+|||||||+..+|+|||+|
T Consensus 288 t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsT 366 (376)
T 2rep_A 288 GLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNS 366 (376)
T ss_dssp --------------------CHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHH
T ss_pred ccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHH
Confidence 99999 999999999999999999999999865 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy11229 400 LRYASRVKKI 409 (705)
Q Consensus 400 Lrfa~rak~I 409 (705)
|+||+|++++
T Consensus 367 LrfA~Rv~~~ 376 (376)
T 2rep_A 367 LRFASKVNQC 376 (376)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-88 Score=734.61 Aligned_cols=336 Identities=35% Similarity=0.507 Sum_probs=281.4
Q ss_pred CeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCCCC
Q psy11229 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPP 96 (705)
Q Consensus 17 ~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 96 (705)
+|||+|||||++..|...+...+|.+.. +..|.+.+|... .+. ......
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~-~~~i~i~~~~~~------------------~~~------------~~~~~~ 49 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYK------------------VDM------------TKYIER 49 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEE-TTEEEEEEEEEE------------------TTT------------EEEEEE
T ss_pred CeEEEEECCCCChHHhccCCceEEEECC-CCEEEEeCCccc------------------ccc------------cccccc
Confidence 6999999999999999888888888753 456666655210 000 000124
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhC-CCCEEEEEeccCCCCccccccccCC--CCCCCCchHHHHHHHHHhhh
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLS-GFNGTIFAYGQTGTGKTFTMEGVNN--VPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~-G~N~tIfaYGqTgSGKT~Tm~G~~~--~~~~~GIipr~~~~lF~~i~ 173 (705)
+.|+||+||+++++|++||+.++.|+|+++++ |||+||||||||||||||||+|... .++..|||||++.+||..+.
T Consensus 50 ~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~ 129 (360)
T 1ry6_A 50 HEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLN 129 (360)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHH
T ss_pred ceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999996 9999999999999999999999752 23456999999999999998
Q ss_pred hcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 174 KADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
.......|.|+|||+|||||+|+|||++... +.+++++..+++|.||+++.|.|++|++.+|..|
T Consensus 130 ~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~---------------~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g 194 (360)
T 1ry6_A 130 IYDKDNTKGIFISFYEIYCGKLYDLLQKRKM---------------VAALENGKKEVVVKDLKILRVLTKEELILKMIDG 194 (360)
T ss_dssp HHCSSSCEEEEEEEEEEETTEEEESCCC--------------------------CCBCGGGSCCEEECSHHHHHHHHHHH
T ss_pred hhccCCceEEEEEEEEeeCCeeEEcccCCcc---------------ceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHH
Confidence 8766788999999999999999999986432 2347888999999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCcc-ccHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASG-QRLK 332 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g-~rlk 332 (705)
.++|++++|.||..|||||+||+|+|++.. .....|+|+|||||||||..++++.| .+++
T Consensus 195 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------------------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~ 255 (360)
T 1ry6_A 195 VLLRKIGVNSQNDESSRSHAILNIDLKDIN-------------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQT 255 (360)
T ss_dssp HHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHH
T ss_pred hhhhhcccccccCCCccceEEEEEEEEecc-------------------CCcceeEEEEEECCCCccccccccccccchH
Confidence 999999999999999999999999997642 23457999999999999999999876 5789
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
|+.+||+||++||+||.||..++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||+|+|.
T Consensus 256 E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~ 334 (360)
T 1ry6_A 256 DGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNS 334 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999998765 79999999999999999999999999999999999999999999999999999997
Q ss_pred ccccCC
Q psy11229 413 ARVNQD 418 (705)
Q Consensus 413 ~~~n~~ 418 (705)
|..|..
T Consensus 335 ~~~~~~ 340 (360)
T 1ry6_A 335 KLEGKP 340 (360)
T ss_dssp ------
T ss_pred cccCCC
Confidence 765543
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6.5e-88 Score=727.93 Aligned_cols=338 Identities=36% Similarity=0.540 Sum_probs=260.6
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeC-CCC--EEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDL-LNG--IITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGS 91 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~-~~~--~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (705)
.+||||||||||++..|...+...++.... ..+ .+.+..+ .
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~-- 47 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN----------------------------------E-- 47 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC----------------------------------C--
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC----------------------------------C--
Confidence 489999999999999997765443332111 111 2222221 1
Q ss_pred CCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHh
Q psy11229 92 AHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGH 171 (705)
Q Consensus 92 ~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~ 171 (705)
.....+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|.. .|||||++++||..
T Consensus 48 ~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~-----~Giipr~~~~lF~~ 121 (349)
T 3t0q_A 48 GRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKW 121 (349)
T ss_dssp --CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT-----TSHHHHHHHHHHHH
T ss_pred CcccceeeecCEEECCCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC-----CchhhHHHHHHHHH
Confidence 122357899999999999999999985 699999999999999999999999999999953 39999999999999
Q ss_pred hhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC-CCcEEEccceEEEcCCHHHHHHH
Q psy11229 172 IAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP-DIGVYVKDLSAYIANNADDMEKI 249 (705)
Q Consensus 172 i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~-~~gv~v~~l~~~~v~s~~e~~~l 249 (705)
+.... ..+.|.|+|||+|||||+|+|||++...... . ........+.+++++ .+|+||.||+++.|.|++|++.+
T Consensus 122 ~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-~--~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~l 198 (349)
T 3t0q_A 122 TANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN-I--DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTI 198 (349)
T ss_dssp HHHHGGGTEEEEEEEEEEEEETTEEEETTC------------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHH
T ss_pred HHHhhhcCceeEEEEEEEEEEcchhhccccccccccc-c--ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHH
Confidence 98643 3679999999999999999999987542110 0 000112235566665 45799999999999999999999
Q ss_pred HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329 (705)
Q Consensus 250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~ 329 (705)
|..|.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..++++.|+
T Consensus 199 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~~t~~~g~ 262 (349)
T 3t0q_A 199 LKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT----------------GETSQGKLNLVDLAGSERINSSAVTGE 262 (349)
T ss_dssp HHHC------------CTGGGSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCCCC----CCH
T ss_pred HHHHHHhCcccccccccccCCcceEEEEEEEEEecCC----------------CCeeEEEEEEEeCCCCCccccccCccc
Confidence 9999999999999999999999999999998765332 235679999999999999999999999
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 330 RLKEASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 330 rlkE~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
|++|+.+||+||++||+||.||+++.. .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|++
T Consensus 263 rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~ 342 (349)
T 3t0q_A 263 RLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVN 342 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999987643 599999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy11229 408 KICNKA 413 (705)
Q Consensus 408 ~I~n~~ 413 (705)
+|+..+
T Consensus 343 ~ik~~~ 348 (349)
T 3t0q_A 343 STKIAK 348 (349)
T ss_dssp C-----
T ss_pred hcccCC
Confidence 997654
No 21
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=3.8e-88 Score=730.21 Aligned_cols=339 Identities=38% Similarity=0.567 Sum_probs=271.0
Q ss_pred CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
+..++|||||||||+...+ ..++.++++...|.+..|.... .+.+ ..
T Consensus 20 ~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~---------------------~~~~-------~~ 66 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIR---------------------RGVV-------NN 66 (358)
T ss_dssp ---CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSS---------------------HHHH-------TT
T ss_pred CCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccc---------------------cccc-------cC
Confidence 4479999999999997643 3467778888888887663110 0000 01
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhh
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHI 172 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i 172 (705)
....+.|+||+||+ +++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+...|||||++++||..+
T Consensus 67 ~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i 145 (358)
T 2nr8_A 67 QQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMI 145 (358)
T ss_dssp SCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHH
T ss_pred CCcceEEECCeecC-CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHH
Confidence 22357899999995 88999999999999999999999999999999999999999998876666799999999999999
Q ss_pred hhcCCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 173 ~~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
+... ...|.|+|||+|||||+|+|||++.+... .....+.+++++ .|++|.||+++.|.+++|++.+|..
T Consensus 146 ~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~--------~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~ 215 (358)
T 2nr8_A 146 EERP-THAITVRVSYLEIYNESLFDLLSTLPYVG--------PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFE 215 (358)
T ss_dssp HTCT-TSCEEEEEEEEEEETTEEEETTSSSTTSC--------TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHH
T ss_pred hhcC-CceEEEEEEEEEEeCCeeeECcCCccccC--------ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHH
Confidence 8754 66899999999999999999998754311 112336678998 7899999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|++....... .....|+|+|||||||||..++++.|+|++
T Consensus 216 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~--------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~ 281 (358)
T 2nr8_A 216 GETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE--------------EKYITSKINLVDLAGSERLGKSGSEGQVLK 281 (358)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---------------------CCEEEEEEEEECCCCC-------------
T ss_pred HHhccccccccCCCCCCcCeEEEEEEEEEEeccCCC--------------CCEEEEEEEEEECCCCCcccccCCchhhHH
Confidence 999999999999999999999999999876422111 345679999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
|+.+||+||++||+||.||++++..||||||||||+||||+|||||+|+|||||||+..+|+||++||+||+|||+|
T Consensus 282 E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 282 EATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp ---CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999986
No 22
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=3.9e-88 Score=734.08 Aligned_cols=332 Identities=39% Similarity=0.542 Sum_probs=263.0
Q ss_pred CCCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCC
Q psy11229 13 EEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSA 92 (705)
Q Consensus 13 ~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (705)
.+.++|+|+|||||++..|...+...+|.++ .++.+.+.+|.... + ...
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~v~~~~~~~------------------~------------~~~ 96 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIP-SKCLLLVHEPKLKV------------------D------------LTK 96 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECC-BSSEEEEEEEEECT------------------T------------CCE
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCCccc------------------c------------ccc
Confidence 3478999999999999999988888888774 34566666552100 0 000
Q ss_pred CCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHH
Q psy11229 93 HEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIF 169 (705)
Q Consensus 93 ~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF 169 (705)
....+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|... .+...|||||++.+||
T Consensus 97 ~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF 176 (387)
T 2heh_A 97 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVF 176 (387)
T ss_dssp EEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHH
T ss_pred cccccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHH
Confidence 0124789999999999999999999999999999999999999999999999999999632 2235699999999999
Q ss_pred HhhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHH
Q psy11229 170 GHIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248 (705)
Q Consensus 170 ~~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ 248 (705)
..+.... ....|.|+|||+|||||+|+|||++.. .+.++|++.++++|.||+++.|.|++|++.
T Consensus 177 ~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~---------------~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ 241 (387)
T 2heh_A 177 LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA---------------KLRVLEDGKQQVQVVGLQEHLVNSADDVIK 241 (387)
T ss_dssp HHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTTE---------------ECEEEECTTCCEEEETCCCEEESSHHHHHH
T ss_pred HHhhcccccCceEEEEEEEEEecCCeEEECCCCCc---------------cceEEEcCCCCEEecCCEEEEeCCHHHHHH
Confidence 9987532 356899999999999999999998642 256699999999999999999999999999
Q ss_pred HHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Cc
Q psy11229 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-AS 327 (705)
Q Consensus 249 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~ 327 (705)
+|..|.++|++++|.||..|||||+||+|.|++.. ...|+|+|||||||||..+++ +.
T Consensus 242 ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------------------~~~skL~lVDLAGSER~~~t~~~~ 300 (387)
T 2heh_A 242 MIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG---------------------RMHGKFSLVDLAGNERGADTSSAD 300 (387)
T ss_dssp HHHHHHHHC---------CGGGSEEEEEEEEESSS---------------------SEEEEEEEEECCCCC---------
T ss_pred HHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC---------------------eeeeEEEEEECCCCcccccccccc
Confidence 99999999999999999999999999999997531 246999999999999998886 46
Q ss_pred cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhcc-CCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHh
Q psy11229 328 GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRV 406 (705)
Q Consensus 328 g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqds-LgGnskt~mI~~isP~~~~~~ETlsTLrfa~ra 406 (705)
+.+++|+.+||+||++||+||.||++++ .|||||||||||||||+ ||||++|+|||||||+..+++||++||+||+||
T Consensus 301 ~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~ra 379 (387)
T 2heh_A 301 RQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379 (387)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHh
Confidence 7889999999999999999999999865 79999999999999999 699999999999999999999999999999999
Q ss_pred hccccc
Q psy11229 407 KKICNK 412 (705)
Q Consensus 407 k~I~n~ 412 (705)
|+|++.
T Consensus 380 k~I~~~ 385 (387)
T 2heh_A 380 KELSPH 385 (387)
T ss_dssp CC----
T ss_pred ccCcCC
Confidence 999865
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.1e-87 Score=722.88 Aligned_cols=293 Identities=40% Similarity=0.598 Sum_probs=245.3
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
..+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|.. .|||||++++||..+..
T Consensus 50 ~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~-----~Giipr~~~~lF~~i~~ 123 (347)
T 1f9v_A 50 QVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINK 123 (347)
T ss_dssp CEEEEEESEEECTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHH
T ss_pred CceEEeeCEEECCCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCCC-----CCchHHHHHHHHHHHHh
Confidence 358899999999999999999985 699999999999999999999999999999953 49999999999999976
Q ss_pred cC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec-CCCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 175 AD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER-PDIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 175 ~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
.. ..+.|.|+|||+|||||+|+|||++........ .....+.++++ +.++++|.||+++.|.++++++.+|..
T Consensus 124 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~ 198 (347)
T 1f9v_A 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKK 198 (347)
T ss_dssp HGGGTCEEEEEEEEEEEETTEEEETTC------------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHH
T ss_pred hhhcCCceEEEEEEEEEECCeeeeccCCcccccccc-----ccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHH
Confidence 43 367899999999999999999998764321100 01123456766 467899999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|++..... +....|+|+|||||||||..++++.|+|++
T Consensus 199 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~ 262 (347)
T 1f9v_A 199 ANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT----------------GAHSYGTLNLVDLAGSERINVSQVVGDRLR 262 (347)
T ss_dssp HC-----------CCGGGSEEEEEEEEEEECC------------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHH
T ss_pred HHhccceeeccCCCCCCCceEEEEEEEEEecCCC----------------CceeeeEEEEEECCCCccccccccchhhhH
Confidence 9999999999999999999999999998765322 335679999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCC--CCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC 410 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~--~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 410 (705)
|+.+||+||++||+||.||++++ ..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|+++|+
T Consensus 263 E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~ 342 (347)
T 1f9v_A 263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 342 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999998865 4799999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy11229 411 NKAR 414 (705)
Q Consensus 411 n~~~ 414 (705)
..++
T Consensus 343 ~~~r 346 (347)
T 1f9v_A 343 LVSR 346 (347)
T ss_dssp TC--
T ss_pred cCCC
Confidence 8775
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=6.9e-88 Score=736.32 Aligned_cols=333 Identities=39% Similarity=0.554 Sum_probs=267.0
Q ss_pred CCCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCC
Q psy11229 14 EIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAH 93 (705)
Q Consensus 14 ~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (705)
+.++|+|+|||||++..|...++..+|.++ .++.+.+.+|.... + ....
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-~~~~v~v~~~~~~~------------------~------------~~~~ 117 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVP-SKCLLLVHEPKLKV------------------D------------LTKY 117 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECC-SSSEEEEEEEEECT------------------T------------CCEE
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEEC-CCCEEEEecCcccc------------------c------------cccc
Confidence 478999999999999999988888888775 34566666542100 0 0000
Q ss_pred CCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHHHHH
Q psy11229 94 EPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFG 170 (705)
Q Consensus 94 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~lF~ 170 (705)
...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|... .+...|||||++.+||.
T Consensus 118 ~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~ 197 (410)
T 1v8k_A 118 LENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFL 197 (410)
T ss_dssp EEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHH
T ss_pred ccceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHH
Confidence 124789999999999999999999999999999999999999999999999999999632 23457999999999999
Q ss_pred hhhhcC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHH
Q psy11229 171 HIAKAD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI 249 (705)
Q Consensus 171 ~i~~~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~l 249 (705)
.+.... ....|.|+|||+|||||+|+|||++.. .+.+++++.++++|.||+++.|.|++|++.+
T Consensus 198 ~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~---------------~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~l 262 (410)
T 1v8k_A 198 LKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA---------------KLRVLEDSRQQVQVVGLQEYLVTCADDVIKM 262 (410)
T ss_dssp HHTSHHHHTTCCEEEEEEEEEETTEEEETTTTTE---------------EEEEEECSSCCEEEETCCCEEESSHHHHHHH
T ss_pred HHhhhcccCccEEEEEEEEEeeCCEEEECCCCCC---------------CceEEECCCCCeEecCCEEEEeCCHHHHHHH
Confidence 987532 357899999999999999999998642 2567999999999999999999999999999
Q ss_pred HHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC-Ccc
Q psy11229 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASG 328 (705)
Q Consensus 250 l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-~~g 328 (705)
|..|.++|++++|.||..|||||+||+|+|++.. ...|+|+|||||||||..+++ +.|
T Consensus 263 l~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------------------~~~skL~lVDLAGSER~~~t~~~~~ 321 (410)
T 1v8k_A 263 INMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------------------RLHGKFSLVDLAGNERGADTSSADR 321 (410)
T ss_dssp HHHHHHTCC--------CCCSSEEEEEEEEESSS---------------------SEEEEEEEEECCCCCC---------
T ss_pred HHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC---------------------cceeEEEEEECCCcccccccccccc
Confidence 9999999999999999999999999999997531 246999999999999999887 467
Q ss_pred ccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhcc-CCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 329 QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 329 ~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqds-LgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
.+++|+.+||+||++||+||.||+.++ .||||||||||+||||| |||||+|+|||||||+..+++||++||+||+|||
T Consensus 322 ~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak 400 (410)
T 1v8k_A 322 QTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400 (410)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhc
Confidence 888999999999999999999998765 79999999999999999 6999999999999999999999999999999999
Q ss_pred ccccccc
Q psy11229 408 KICNKAR 414 (705)
Q Consensus 408 ~I~n~~~ 414 (705)
+|..+|.
T Consensus 401 ~i~~~~~ 407 (410)
T 1v8k_A 401 ELSHHHH 407 (410)
T ss_dssp TTC----
T ss_pred cCCCCCC
Confidence 9976653
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-86 Score=724.64 Aligned_cols=293 Identities=41% Similarity=0.609 Sum_probs=249.3
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
..+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|.. .|||||++.+||..+..
T Consensus 106 ~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~-----~Giipr~~~~lF~~i~~ 179 (403)
T 4etp_A 106 QVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINK 179 (403)
T ss_dssp EEEEEEESEEECTTCCHHHHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHH
T ss_pred CceEEEcCEEECCCCchHHHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCCC-----CccchhHHHHHHHHHHh
Confidence 358899999999999999999985 589999999999999999999999999999953 39999999999999986
Q ss_pred c-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecC-CCcEEEccceEEEcCCHHHHHHHHHh
Q psy11229 175 A-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERP-DIGVYVKDLSAYIANNADDMEKIMSL 252 (705)
Q Consensus 175 ~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~-~~gv~v~~l~~~~v~s~~e~~~ll~~ 252 (705)
. ...+.|.|+|||+|||||+|+|||++........ .....+.+++++ .++++|.|++++.|.|+++++.+|..
T Consensus 180 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~ 254 (403)
T 4etp_A 180 LKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKK 254 (403)
T ss_dssp HHTTTEEEEEEEEEEEEETTEEEETTCC-------------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHH
T ss_pred hhccCceEEEEEEEEEEecceeeEccCCcccccccc-----ccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHH
Confidence 4 3468999999999999999999998764321100 011224556665 56799999999999999999999999
Q ss_pred hhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHH
Q psy11229 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLK 332 (705)
Q Consensus 253 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlk 332 (705)
|.++|++++|.||..|||||+||+|+|.+..... +....|+|+|||||||||..++++.|.|++
T Consensus 255 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~ 318 (403)
T 4etp_A 255 ANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT----------------GAHSYGTLNLVDLAGSERINVSQVVGDRLR 318 (403)
T ss_dssp HC--C----CHHHHHHHTSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCCCCCSSCCHHHHH
T ss_pred HHHhcccccccCCcccCCcccEEEEEEEEeecCC----------------CCeeEEEEEEEECCCCccccccCChhHHHH
Confidence 9999999999999999999999999998765332 234579999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCC--CCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q psy11229 333 EASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKIC 410 (705)
Q Consensus 333 E~~~IN~SL~aL~~vI~aL~~~~~--~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 410 (705)
|+.+||+||++||+||.||+++.. .||||||||||+||||||||||+|+|||||||+..+|+||++||+||+|+++|+
T Consensus 319 E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~ 398 (403)
T 4etp_A 319 ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 398 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999987543 599999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q psy11229 411 NKAR 414 (705)
Q Consensus 411 n~~~ 414 (705)
..|+
T Consensus 399 ~~~r 402 (403)
T 4etp_A 399 LVSR 402 (403)
T ss_dssp ----
T ss_pred cCCC
Confidence 8775
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=5.9e-86 Score=709.58 Aligned_cols=316 Identities=34% Similarity=0.529 Sum_probs=244.7
Q ss_pred cCCCCCeEEEEEcCCCCCccccCCCcceEEEeCC-CCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCC
Q psy11229 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLL-NGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAG 90 (705)
Q Consensus 12 ~~~~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~-~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (705)
..+.++|||+|||||+++.|.. ++..++.+.+. ++...+
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~--------------------------------------- 57 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLI--------------------------------------- 57 (344)
T ss_dssp -CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE---------------------------------------
T ss_pred CCCCCCeEEEEECCCCCccccc-CCceEEEecCCCCCceEE---------------------------------------
Confidence 4557899999999999987732 33334433210 000000
Q ss_pred CCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCC---CCCCCCchHHHHHH
Q psy11229 91 SAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAH 167 (705)
Q Consensus 91 ~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~~~~GIipr~~~~ 167 (705)
...+.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||.|... .++..|||||++++
T Consensus 58 ---~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~ 134 (344)
T 3dc4_A 58 ---VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGD 134 (344)
T ss_dssp ---ETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHH
T ss_pred ---ecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHH
Confidence 124789999999999999999999999999999999999999999999999999998643 24567999999999
Q ss_pred HHHhhhhcCC--CceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHH
Q psy11229 168 IFGHIAKADE--SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245 (705)
Q Consensus 168 lF~~i~~~~~--~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e 245 (705)
||+.+..... ...|.|+|||+|||||+|+|||++...... .+..+.|++++.|.|++|
T Consensus 135 LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~--------------------~~~~~~~~~~~~v~s~~e 194 (344)
T 3dc4_A 135 IFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPM--------------------VAARCQRCTCLPLHSQAD 194 (344)
T ss_dssp HHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTSBC--------------------CSSTTTCSCCEECSSHHH
T ss_pred HHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCCcc--------------------ccccccCceecccCCHHH
Confidence 9999976543 357999999999999999999987643211 112245889999999999
Q ss_pred HHHHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccC
Q psy11229 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG 325 (705)
Q Consensus 246 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~ 325 (705)
++.+|..|.++|++++|.||..|||||+||+|+|+.. ...|+|+|||||||||..+++
T Consensus 195 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------------------~~~skl~lVDLAGSEr~~~t~ 252 (344)
T 3dc4_A 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------------------THHSRMNIVDLAGSEGVRRTG 252 (344)
T ss_dssp HHHHHHHHHHTCC----------CCEEEEEEEEEECS----------------------SCEEEEEEEECCCCCCC----
T ss_pred HHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------------------CcEEEEEEEECCCCccccccc
Confidence 9999999999999999999999999999999999642 246899999999999999999
Q ss_pred CccccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHH
Q psy11229 326 ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASR 405 (705)
Q Consensus 326 ~~g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~r 405 (705)
+.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..+++||++||+||+|
T Consensus 253 ~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~r 331 (344)
T 3dc4_A 253 HEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTS 331 (344)
T ss_dssp ---------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred hhcccccc
Q psy11229 406 VKKICNKA 413 (705)
Q Consensus 406 ak~I~n~~ 413 (705)
|+.....|
T Consensus 332 a~~~~~~~ 339 (344)
T 3dc4_A 332 AKAAALEH 339 (344)
T ss_dssp HHHHTTTC
T ss_pred HhhcCCCC
Confidence 99876554
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.9e-85 Score=720.61 Aligned_cols=327 Identities=35% Similarity=0.568 Sum_probs=266.6
Q ss_pred CCCeEEEEEcCCCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCCCCCCC
Q psy11229 15 IENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHE 94 (705)
Q Consensus 15 ~~~VkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 94 (705)
.+||+|||||||+++.|...++ ++....+...|.+..+.. ......
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~--------------------------------~~~~~~ 103 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDA--------------------------------QAKSKM 103 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC---------------------------------------
T ss_pred CCCEEEEEEcCCCCchhccCcc--eEEEecCCCEEEEecCCc--------------------------------cccccc
Confidence 5899999999999999865543 232333445666654411 000112
Q ss_pred CCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhhh
Q psy11229 95 PPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK 174 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~~ 174 (705)
..+.|+||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|.+..+ |||||++++||..+..
T Consensus 104 ~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~---Giipr~~~~lF~~i~~ 179 (412)
T 3u06_A 104 GQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV---GVIPRTVDLLFDSIRG 179 (412)
T ss_dssp CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEE---CHHHHHHHHHHHHHHH
T ss_pred CceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCC---ccHHHHHHHHHHhhhh
Confidence 35789999999999999999986 5799999999999999999999999999999976554 9999999999999976
Q ss_pred cC-CCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCCHHHHHHHHHhh
Q psy11229 175 AD-ESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLG 253 (705)
Q Consensus 175 ~~-~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s~~e~~~ll~~g 253 (705)
.. ..+.|.|+|||+|||||.|+|||++.... +. +.+.+++.+++||.||+++.|.++++++.+|..|
T Consensus 180 ~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-~~-----------i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 247 (412)
T 3u06_A 180 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD-ME-----------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247 (412)
T ss_dssp HGGGTEEEEEEEEEEEEETTEEEETTCCSCCC-CC-----------EEECSSCTTSEEETTCCCEECCSHHHHHHHHHHH
T ss_pred hcccCceEEEEEEEEEEeCCeeEEcCCCCCCC-ce-----------eeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHH
Confidence 43 46899999999999999999999765331 11 2335678899999999999999999999999999
Q ss_pred hccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccccHHH
Q psy11229 254 NKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKE 333 (705)
Q Consensus 254 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE 333 (705)
.++|++++|.||..|||||+||+|+|.+..... .....|+|+|||||||||.. .|.|++|
T Consensus 248 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------------~~~~~~kL~lVDLAGSEr~~----~~~rl~E 307 (412)
T 3u06_A 248 KMNRATASTAGNERSSRSHAVTKLELIGRHAEK----------------QEISVGSINLVDLAGSESPK----TSTRMTE 307 (412)
T ss_dssp HHHCC-----CHHHHTTCEEEEEEEEEEEETTT----------------TEEEEEEEEEEECCCCCC-------------
T ss_pred HhcccccccCCCCCCcCceEEEEEEEEEEeCCC----------------CCEEEEEEEEEECCCCCcCC----ccchhHh
Confidence 999999999999999999999999998765322 34668999999999999974 4689999
Q ss_pred HHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q psy11229 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412 (705)
Q Consensus 334 ~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~ 412 (705)
+.+||+||++||+||.||+++. .||||||||||+||||||||||+|+|||||||+..+|+||++||+||+|+++|+..
T Consensus 308 ~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 308 TKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp -CTTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999864 79999999999999999999999999999999999999999999999999999844
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.3e-79 Score=724.53 Aligned_cols=335 Identities=38% Similarity=0.553 Sum_probs=253.7
Q ss_pred CCCCeEEEEEcC----CCCCccccCCCcceEEEeCCCCEEEEeCCCCCCCCCCCcccccccCCcccccccccceeccCCC
Q psy11229 14 EIENVRVFVRVR----PLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVDLLNGIITVKNPA 89 (705)
Q Consensus 14 ~~~~VkV~vRvR----Pl~~~E~~~~~~~~v~~~~~~~~v~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (705)
-.+++||||||| |.+..|.+.|.. .+.+..|.+..... ...+.+.++.
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~------------------~~~~~~~~~~ 423 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSED----------IIQYEAPQDINDES------------------KQELVITRNI 423 (715)
T ss_dssp SSCSEEEEEEECCCC-----------------------BCEEECCC-------------------------CEEEEEEEE
T ss_pred HHhcCeEEEEEecccccccccccccccc----------ceeccCCCCCCCCC------------------CCeEEEcCCC
Confidence 368999999999 555555544433 23333443222211 1222222222
Q ss_pred CCCCCCCeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHH
Q psy11229 90 GSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIF 169 (705)
Q Consensus 90 ~~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF 169 (705)
.+ ....++|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|.. .|||||++++||
T Consensus 424 ~~-~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~-----~Giipr~~~~lf 496 (715)
T 4h1g_A 424 NN-NFSNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT-----NGMIPLSLKKIF 496 (715)
T ss_dssp TT-EEEEEEEECSEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTT-----TSHHHHHHHHHH
T ss_pred CC-CCCCeEEEeceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCCC-----CCcHHHHHHHHH
Confidence 22 33468999999999999999999875 599999999999999999999999999999942 499999999999
Q ss_pred Hhhhhc-CCCceEEEEEEEEEEEcCeeeeccCCCccccccccccCCCcceeeeeeec-CCCcEEEccceEEEcCCHHHHH
Q psy11229 170 GHIAKA-DESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKER-PDIGVYVKDLSAYIANNADDME 247 (705)
Q Consensus 170 ~~i~~~-~~~~~~~V~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~-~~~gv~v~~l~~~~v~s~~e~~ 247 (705)
+.|... ..+..|.|+|||+|||||+|+|||++...... .+.++++ ..++++|.||+++.|.|++|++
T Consensus 497 ~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~-----------~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~ 565 (715)
T 4h1g_A 497 NDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNT-----------KYEIKHDDIAGKTTVTNVSTIDIKSPEQAI 565 (715)
T ss_dssp HHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTC-----------CCCEEEETTTTEEEETTCCCEECSCHHHHH
T ss_pred HHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCC-----------cceeEEecCCCCEEEeCCEEEEcCCHHHHH
Confidence 999764 34678999999999999999999987533211 1233554 4556999999999999999999
Q ss_pred HHHHhhhccCccccccCCCCCCCceeEEEEEEEeecCCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCc
Q psy11229 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGAS 327 (705)
Q Consensus 248 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~ 327 (705)
.+|..|.++|++++|.||..|||||+||+|+|++..... .....|+|+|||||||||..++++.
T Consensus 566 ~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~----------------~~~~~~~l~lvDLAGsEr~~~~~~~ 629 (715)
T 4h1g_A 566 TILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT----------------KESSYGTLNLIDLAGSERLNNSRAE 629 (715)
T ss_dssp HHHHHHHCC----------CGGGSEEEEEEEEEEEETTT----------------CCEEEEEEEEEECCCCCC-------
T ss_pred HHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC----------------CCEeEEEEEEEeCCCcccccccCCh
Confidence 999999999999999999999999999999998765332 3356799999999999999999999
Q ss_pred cccHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhh
Q psy11229 328 GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407 (705)
Q Consensus 328 g~rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak 407 (705)
|+|++|+.+||+||++||+||.+|+.++..|||||||||||||||||||||+|+|||||||+..+|+||++||+||+|||
T Consensus 630 g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~ 709 (715)
T 4h1g_A 630 GDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVN 709 (715)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998777899999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy11229 408 KIC 410 (705)
Q Consensus 408 ~I~ 410 (705)
+|+
T Consensus 710 ~i~ 712 (715)
T 4h1g_A 710 NTR 712 (715)
T ss_dssp C--
T ss_pred cce
Confidence 985
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=9.8e-33 Score=243.00 Aligned_cols=97 Identities=51% Similarity=0.698 Sum_probs=91.0
Q ss_pred HHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy11229 335 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414 (705)
Q Consensus 335 ~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~ 414 (705)
.+||+||++||+||.+|++++..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||+.|+|+|.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcch-HHHHHHHHHH
Q psy11229 415 VNQDPKD-ALLIKYQKEI 431 (705)
Q Consensus 415 ~n~~~~~-~~l~~~~~ei 431 (705)
+|+++.. .++++|++||
T Consensus 82 ~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 82 VNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CEEECCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHhh
Confidence 9998765 5667788776
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=7.5e-30 Score=232.20 Aligned_cols=95 Identities=52% Similarity=0.719 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccC
Q psy11229 338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417 (705)
Q Consensus 338 N~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~n~~~~n~ 417 (705)
|+||++||+||.+|++++..||||||||||+||+|+|||||+|+||+||||+..+|+||++||+||+||+.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchH-HHHHHHHHHH
Q psy11229 418 DPKDA-LLIKYQKEIS 432 (705)
Q Consensus 418 ~~~~~-~l~~~~~ei~ 432 (705)
++... ++++|+++++
T Consensus 81 ~~~~~~l~~~~~~e~~ 96 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKE 96 (117)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 88754 4444444433
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-25 Score=228.59 Aligned_cols=231 Identities=12% Similarity=0.143 Sum_probs=157.0
Q ss_pred eeEeeceeeCCCCChH--HHHHhhhhhHHHHhhC-CCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 97 KTFTFDTVFDANSKQL--DIYNETARPIVDKVLS-GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~--~Vy~~~~~plV~~vl~-G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
++|.||+||++.++|+ +||++ +.++|+++|+ |||+||||||||||||| ||++..+|....
T Consensus 57 k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT----------------~ral~q~f~~~~ 119 (298)
T 2o0a_A 57 HVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL----------------RESLIKFLAEKD 119 (298)
T ss_dssp CEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH----------------HHHHHHHHHSTT
T ss_pred ceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc----------------HHHHHHHHHHhh
Confidence 7899999999999999 99999 5899999999 99999999999999999 999999998765
Q ss_pred h-cCCCceEEEEEEEEEEE-cCeeeeccCCCccccccccccCCCcceeeeeeecCCCcEEEccceEEEcCC-HHHHHHHH
Q psy11229 174 K-ADESVKFLVRVSYFEIY-NEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANN-ADDMEKIM 250 (705)
Q Consensus 174 ~-~~~~~~~~V~vS~~EIy-nE~v~DLL~~~~~~~~~~~~~~~~~~~~l~i~e~~~~gv~v~~l~~~~v~s-~~e~~~ll 250 (705)
. .. +.|.+.+||+||| ||.++|||...+.. + .++|+.+.++.++|.|++.+.|.+ ++|+..++
T Consensus 120 ~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~~----------~--k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~ 185 (298)
T 2o0a_A 120 TIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSHN----------D--KDSIKLKFEKHSISLDSKLVIIENGLEDLPLNF 185 (298)
T ss_dssp SHHH--HHEEEEEEEEEEECC-CEEETTSCCC------------------CEEEECSSCEEEESCCEEESSGGGGSCTTT
T ss_pred hhcc--cceEEEEEEEEEecCCchHHhcCCCCCC----------C--cceEEecCCCCEEecccEEEEccccHHHHHHHh
Confidence 4 32 8899999999999 99999999743322 1 245677888999999999999999 88887776
Q ss_pred HhhhccCccccccCCCCCCCceeEEEEEEEeec-CCCCccccCcchhhhhhccCceeeeeEEEEecCCCccccccCCccc
Q psy11229 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSS-GLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQ 329 (705)
Q Consensus 251 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~ 329 (705)
..+... ..|+ +.-.|+.+.+.... ...+. ... ..-.+.|+.+....
T Consensus 186 ~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~-------------~~~-~~~d~yf~e~~~~~---------- 232 (298)
T 2o0a_A 186 SCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGN-------------NDP-VPVDFYFIELNNLK---------- 232 (298)
T ss_dssp TCC----------------CEEEEEEEEEEESCC--------------------C-CCEEEEEEEECSHH----------
T ss_pred hccccc------ccCC---CCceEEEEEEecCccccccc-------------CCC-CceEEEEEEeCCHH----------
Confidence 332221 1222 23445555554421 11111 000 11246677654211
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHhcCCCCCccCCCCcchhhhhccCCCCcceeeEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q psy11229 330 RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409 (705)
Q Consensus 330 rlkE~~~IN~SL~aL~~vI~aL~~~~~~hVPyRdSkLTrLLqdsLgGnskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 409 (705)
+...|.+.+ ..+ -+-.|+++-+|+.-|- .+|.+++.++.-...+ -.-|..+.++.++
T Consensus 233 ----------~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~----~~lL~~s~~i~~~ 289 (298)
T 2o0a_A 233 ----------SIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNV----NKLLTISEEVQTQ 289 (298)
T ss_dssp ----------HHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGH----HHHHHHHHHHHHH
T ss_pred ----------HHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCch----hHHHHHHHHhhcc
Confidence 233444433 222 2356788888887664 5688999999765432 2478888888888
Q ss_pred ccccc
Q psy11229 410 CNKAR 414 (705)
Q Consensus 410 ~n~~~ 414 (705)
.|.-+
T Consensus 290 ~~~~~ 294 (298)
T 2o0a_A 290 LCKRK 294 (298)
T ss_dssp TC---
T ss_pred cCccc
Confidence 77544
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.78 E-value=0.052 Score=52.59 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=67.1
Q ss_pred chhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 471 IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDME 550 (705)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e 550 (705)
++.+++.+|..+......|..+...|...+......+..........+..+..++...+.....|+..|.+.+....+++
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44566666666666666666666666543322111111111111223445555666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 551 EKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQ 609 (705)
Q Consensus 551 ~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~ 609 (705)
........-++.+..++......+.-+..|+.+ .+..+.+...|.+.++.|..|+..+
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-----------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555666666666666666666666654 3333444555666666666666544
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.17 E-value=0.14 Score=58.40 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 528 RKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 528 ~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.+.+.+.+...++..+++.....+.+..+++|.+.++++++...+.+..+++|+.++
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333444444455555555555555566666666666665555555555555444444
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.82 E-value=0.063 Score=65.64 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.7
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
++.|.||+.-|-+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 59999999999999999976
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.80 E-value=0.69 Score=47.05 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAII 613 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l~~~ii 613 (705)
.|..+++..+.+...+++.+..+.++++.++..+..+...+...+.++.....+......++...+..+.. ...-+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~----~r~~l 169 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK----KKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 34444444444444444444444444555555555555555555555554444444444444444433332 23333
Q ss_pred HhcCChHH---HHHHHh
Q psy11229 614 QKFIPTKY---LELMTQ 627 (705)
Q Consensus 614 ~~fiP~~~---~~ki~~ 627 (705)
-.-||++- .++|+.
T Consensus 170 ~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 170 VEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHTSCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 44567753 445543
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.65 E-value=2 Score=43.61 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy11229 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE--- 605 (705)
Q Consensus 529 ~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e--- 605 (705)
.+..+.++..+...+++...+.+++..++.+++.++..+..+...+...+.++.....+...+...+......+...
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 33333444444444444444444444444444444444444444444444444444444444444433333333322
Q ss_pred --HHHHHHHHH-------------------hcCChHHHHHHHh--hcccccccCceeecc
Q psy11229 606 --YSYQQAIIQ-------------------KFIPTKYLELMTQ--NATWNEDIGEWELKC 642 (705)
Q Consensus 606 --l~l~~~ii~-------------------~fiP~~~~~ki~~--~~~wdee~~~W~l~~ 642 (705)
|..+..|.. +-|||..+..|.. ...+.+.=|.+-+..
T Consensus 176 ~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 176 KIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp HHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred HHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 344444443 2356777777765 356777777766654
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.13 E-value=0.36 Score=59.01 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHhhhhc-CCCceEEEEEEEEEEEcCeeee
Q psy11229 159 GIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEIRD 197 (705)
Q Consensus 159 GIipr~~~~lF~~i~~~-~~~~~~~V~vS~~EIynE~v~D 197 (705)
+|.-+.|.+|...|... ........+|..+.||.=++++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 55556666666666542 1111123567778888765554
No 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.53 E-value=0.15 Score=63.04 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred hCCCCEEEEEeccCCCCccccc
Q psy11229 127 LSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 127 l~G~N~tIfaYGqTgSGKT~Tm 148 (705)
-.+.|.||+..|-+|||||.+.
T Consensus 165 ~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 165 QDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HHTCCEEEECCCSTTSSTTHHH
T ss_pred hcCCCcEEEEecCCCCCccHHH
Confidence 3599999999999999999763
No 39
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.21 E-value=0.012 Score=55.99 Aligned_cols=51 Identities=22% Similarity=0.145 Sum_probs=36.4
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++||.....+..|..+++.+ ..++.++--.....++-||++|||||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 367888776666788888654 566665543334457789999999999873
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.09 E-value=2.1 Score=57.59 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 521 AAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR 600 (705)
Q Consensus 521 ~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~ 600 (705)
+++++++.+.+..+.++.|++.+++...++++|+....|.+.++.+++.+..++..+..=+.-+ ..|+..+.+++.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL----~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL----NSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccccHHHHHH
Confidence 3344444444444444444444555555555555555555555555555555555444333333 335555555555
Q ss_pred HHHHHH-------HHHHHHHHhc--CChHHHHHHH
Q psy11229 601 QITKEY-------SYQQAIIQKF--IPTKYLELMT 626 (705)
Q Consensus 601 ~~~~el-------~l~~~ii~~f--iP~~~~~ki~ 626 (705)
.+..++ -|....|-++ .+.++...+.
T Consensus 2095 ~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~ 2129 (3245)
T 3vkg_A 2095 NFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLM 2129 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555543 3344445444 3345544443
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.82 E-value=2.5 Score=36.39 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGF 595 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~ 595 (705)
++...+|...+..+..+.+.|...+.+...+...+..++.+...+...=.+.|..+...+.++.+.+.+...-.-.+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777788889999999999999999999999999988888888888888877766666555444333333
No 42
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.46 E-value=0.028 Score=54.43 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC-EEEEEeccCCCCcccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN-GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N-~tIfaYGqTgSGKT~Tm~ 149 (705)
.++||.....+..+..++.. +..++...-.+.. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46788776665567777774 3455555433332 678889999999999863
No 43
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.33 E-value=6.6 Score=38.50 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q psy11229 427 YQKEISELKKKLE 439 (705)
Q Consensus 427 ~~~ei~~Lk~~l~ 439 (705)
+++.+..|+..+.
T Consensus 4 ~~~~~~~l~~~~~ 16 (284)
T 1c1g_A 4 IKKKMQMLKLDKE 16 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH
Confidence 4444555555443
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.26 E-value=2.3 Score=57.30 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR---KEIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~---~e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
++..++++.+..+.+|++..+++.++.+++..++.+++ .|++.+...+...++.|..-..+|+..
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444555555544444444333 244445555555555555555555444
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.17 E-value=0.29 Score=60.58 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHhhhhcCCC--ceEEEEEEEEEEEcCeeee
Q psy11229 159 GIIPNSFAHIFGHIAKADES--VKFLVRVSYFEIYNEEIRD 197 (705)
Q Consensus 159 GIipr~~~~lF~~i~~~~~~--~~~~V~vS~~EIynE~v~D 197 (705)
+|.-+.|.+|...|...-.. .....+|..+.||.=++++
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 44445555555555432111 1123456666666544443
No 46
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.78 E-value=0.039 Score=57.85 Aligned_cols=52 Identities=15% Similarity=0.390 Sum_probs=35.3
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.++||.+...+..+..++. .+..++...-.+....|+-||++|+||||.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 3678776554445566766 345666655444456788899999999998743
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.28 E-value=5.2 Score=34.65 Aligned_cols=82 Identities=9% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQIT 603 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~ 603 (705)
+.+....+.+.++..+...+......++.+.+|+..+..+...+.+....|..++..+. +...........+..|+
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe----e~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL----FAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555554444444433332 22334455566666777
Q ss_pred HHHHHH
Q psy11229 604 KEYSYQ 609 (705)
Q Consensus 604 ~el~l~ 609 (705)
|.++|.
T Consensus 93 Rriqll 98 (101)
T 3u1c_A 93 RRIQLV 98 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.16 E-value=1.2 Score=41.07 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
.++-+.+...+.|++.+++.+.+...+-..+.+++.+.+..++++.++..++..++.++..++.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666666666666666666666666666655543
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.42 E-value=2 Score=39.46 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 511 AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 511 ~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
....+...+.+++++++..+....|+.++.....+...+.+.+..|++++..+++++.++..++.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555556666666666666666666666666666666666666666666666554443
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.21 E-value=6.8 Score=33.84 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEYSYQ 609 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el~l~ 609 (705)
..........+..|+|.++|.
T Consensus 78 ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 78 EKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666677766654
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.97 E-value=8.8 Score=34.67 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~ 576 (705)
.|..+|+.-.....+.++.+..|......+..+|+.+...+..
T Consensus 52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444434444445555555555444444444444444433
No 52
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=90.49 E-value=6.2 Score=34.60 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLELLQKKV 500 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~l~~~~ 500 (705)
+++...+.....+....+.|+.++
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445554443
No 53
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=90.39 E-value=3.6 Score=36.73 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 585 QRENRKEIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 585 ~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
..++..-...+.....+|.++++-+..|||+|
T Consensus 70 k~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 70 KSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777888888888899888
No 54
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=90.29 E-value=9.4 Score=33.92 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 587 ENRKEIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 587 e~~~e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
++..-...+.+-..+|+++++-+..||++|
T Consensus 72 eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 72 QYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556667778888888899988
No 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.54 E-value=14 Score=34.84 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN 588 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~ 588 (705)
+++.......++-+.......+...+++.++.+|++|++.+...+.++......+.+.+.++..+.
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444455566667777777776666666666666666666665554443
No 56
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.37 E-value=9.9 Score=32.85 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 530 QKEEELKKNIQEKDAERIDMEEKYSSLQ 557 (705)
Q Consensus 530 ~~~~~l~~~l~~~~~e~~~~e~~~~~l~ 557 (705)
.....|...++..+.+....++.+...+
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333444333333
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.86 E-value=9.1 Score=35.44 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 510 KAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 510 ~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
....+.+.+..++.++...+.+...++..++++......+...+..|+-+...++.+++++..+...+
T Consensus 62 ~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 62 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666666666666665555555566665555555555555554444333
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.73 E-value=12 Score=39.55 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 587 ENRKEIEGFLDNVRQ 601 (705)
Q Consensus 587 e~~~e~e~~~~~~~~ 601 (705)
+++-.++.+++++++
T Consensus 173 ~~~vD~e~ye~qqKQ 187 (390)
T 1deq_A 173 EHKVDLEDYKNQQKQ 187 (390)
T ss_pred hhhccHHHHHHHHHH
Confidence 333445555554444
No 59
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.35 E-value=12 Score=32.34 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKY 553 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~ 553 (705)
|+..++..+.+....++.+
T Consensus 49 L~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 60
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.19 E-value=0.21 Score=51.62 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=29.6
Q ss_pred eceeeCCCCChHHHHHhhhhhHHHHhhC--CCC--EEEEEeccCCCCccccc
Q psy11229 101 FDTVFDANSKQLDIYNETARPIVDKVLS--GFN--GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 101 FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~--G~N--~tIfaYGqTgSGKT~Tm 148 (705)
||..|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3333433333345666666667766554 222 35778999999999865
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.12 E-value=19 Score=34.63 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAE 545 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e 545 (705)
+...|+..+.....+
T Consensus 57 ~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 57 RNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.21 E-value=0.23 Score=49.73 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=29.1
Q ss_pred eEeeceeeCCCCChHHHHHhhh----hhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETA----RPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~----~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++||.+.+.+.....+-+.+. .+.+..+---....|+-||++|||||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 4788988876544434332221 11222221111223899999999999987
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.84 E-value=0.3 Score=45.45 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.3
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344445555666778999999999999873
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.68 E-value=0.2 Score=50.59 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=22.0
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37899888654433333322 222222 2356788999999999875
No 65
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.57 E-value=3.7 Score=38.16 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 591 EIEGFLDNVRQITK 604 (705)
Q Consensus 591 e~e~~~~~~~~~~~ 604 (705)
..+.+.++|+.|+.
T Consensus 130 rE~~yee~I~~L~~ 143 (147)
T 2b9c_A 130 KNYHLENEVARLKK 143 (147)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.23 Score=52.32 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
|-..+-.|...+|+-||++|||||.++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333444678889999999999999876
No 67
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.10 E-value=22 Score=33.12 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
.++.........|...+.+-...+...|.....+..|++.|+.-|
T Consensus 51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566777777767777778888888888888888765
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.92 E-value=0.2 Score=52.49 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=28.9
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
...|+|+.+++.+ .+... +...++.+..+.|+-||++|+|||+..
T Consensus 18 ~~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 3458899988743 33322 222333333445899999999999876
No 69
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.84 E-value=0.29 Score=49.33 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=32.0
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHH-----HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIV-----DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV-----~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++|+.+.+.+...+.+.+.+ ..+- ..+-......|+-||++|||||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 467899998887766665533 2211 1111122334889999999999976
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.81 E-value=12 Score=30.79 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLK 568 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~ 568 (705)
+...+..++..++++++....+|.
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 71
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.73 E-value=1.9 Score=47.40 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=53.4
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G 159 (705)
.+||.|-+-+.--+++.+.+..|+.. .++. |. .-.|+-||++|||||++. .|+.-.....|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 57899888777667777777777763 3443 32 346888999999999764 22222222347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--.+.+..+|.......
T Consensus 258 ese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 258 ESARIIREMFAYAKEHE 274 (437)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77888999998876643
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.58 E-value=0.34 Score=45.08 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=22.3
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344445555667778999999999998763
No 73
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.39 E-value=0.29 Score=50.67 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=33.1
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-Hhh----CCCCEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVL----SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl----~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|||||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 67888887766666666665555321 111 123456888999999999876
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.37 E-value=0.3 Score=49.62 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=33.0
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-----HhhCCCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-----KVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-----~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++|+.+.+.+..-+.+.+.+..|+.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 478999888766555565555443322 111123445888999999999876
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.11 E-value=13 Score=40.94 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=6.7
Q ss_pred eEEEEecCCCc
Q psy11229 309 RLHLVDLAGSE 319 (705)
Q Consensus 309 kL~lVDLAGSE 319 (705)
.|..+||.|..
T Consensus 238 ~L~~L~l~~N~ 248 (487)
T 3oja_A 238 NLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECTTCC
T ss_pred CCCEEEcCCCC
Confidence 45666776643
No 76
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.03 E-value=0.42 Score=49.72 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|+||..+... .+...+.. +..++..--. ....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g~-~~~~a~~~-~~~~~~~~~~-~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVGE-GNRLAYEV-VKEALENLGS-LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCCT-TTHHHHHH-HHHHHHTTTT-SCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCCC-cHHHHHHH-HHHHHhCcCC-CCCeEEEECCCCCcHHHHHH
Confidence 37888876332 33444543 3444443211 23357889999999999874
No 77
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.98 E-value=0.77 Score=50.39 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCcccccc--------------ccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTME--------------GVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~~~~~~~~G 159 (705)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||++|||||++.. |..-.....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 57899988887777888888888763 3333 32 3468889999999997642 2221122347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--.+.+..+|.......
T Consensus 258 ese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEKA 274 (434)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 77889999998776654
No 78
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.97 E-value=25 Score=32.80 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554 (705)
Q Consensus 475 ~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~ 554 (705)
.+.+|.++.........++..|+..+...+.+ +...+..... +.+.-+....++..|...+++.+......+....
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~n-lKsLE~seek---asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~ 101 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNN-LKSLEAQAEK---YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666655443322 1212211111 1111222233333444555554444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.|+.+++.+..+|..-..++..+..++.
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444444444
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.89 E-value=12 Score=41.13 Aligned_cols=11 Identities=9% Similarity=-0.142 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q psy11229 425 IKYQKEISELK 435 (705)
Q Consensus 425 ~~~~~ei~~Lk 435 (705)
.+++.|++.|.
T Consensus 324 ~eF~~Eve~L~ 334 (487)
T 3oja_A 324 ETERLECEREN 334 (487)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34556655544
No 80
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.79 E-value=0.37 Score=47.02 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=27.3
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
++||.+++. ..+..++..+ ..++ ..+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l-~~~~---~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGAL-KSAA---SGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-HHHH---HTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHHH-HHHH---hCCCCCeEEEECCCCCCHHHHHH
Confidence 566766652 2334555432 2222 22345678889999999999763
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.72 E-value=1.9 Score=47.28 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=53.4
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G 159 (705)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||++|||||++. .|..-.....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 57888888777666777777777653 3333 32 335899999999999764 22222222347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--++.+..+|.......
T Consensus 249 e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 88899999998876543
No 82
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.58 E-value=6.7 Score=40.77 Aligned_cols=88 Identities=14% Similarity=0.239 Sum_probs=60.5
Q ss_pred CeeEeeceeeCCCC-ChHHHHHhhhhhHHHHhh-CCCCEEEEEeccCCCCccccccccCCCCCCCCchHHHHHHHHHhhh
Q psy11229 96 PKTFTFDTVFDANS-KQLDIYNETARPIVDKVL-SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIA 173 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~-tQ~~Vy~~~~~plV~~vl-~G~N~tIfaYGqTgSGKT~Tm~G~~~~~~~~GIipr~~~~lF~~i~ 173 (705)
.+.|.|++|++... +-.+++..-++..++-++ .+.|+.||..|..- . + .....++..+.
T Consensus 91 ~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w----~---~Lr~~lL~fi~ 151 (333)
T 4etp_B 91 EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------H----G---SLRESLIKFLA 151 (333)
T ss_dssp CCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------C----C---HHHHHHHHHHH
T ss_pred cceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------c----H---HHHHHHHHHHH
Confidence 57899999998775 334455455689999999 89999999988541 1 1 22333444443
Q ss_pred hcCC--CceEEEEEEEEEEEcCe-eeeccCCC
Q psy11229 174 KADE--SVKFLVRVSYFEIYNEE-IRDLLSKN 202 (705)
Q Consensus 174 ~~~~--~~~~~V~vS~~EIynE~-v~DLL~~~ 202 (705)
..+. .+.|.+.+-|+.+-++. ..|||.+.
T Consensus 152 ~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 152 EKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp STTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred hcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 3210 25788999998887776 69999875
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.38 E-value=20 Score=32.25 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD 597 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~ 597 (705)
+.++.+.+.....|..+++........++..+..++. ++...+.+|..+...+..++.++..... +-++|++
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~----EYq~Ll~ 112 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ----EYKILLD 112 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3344444444444444444443333334443333322 2233334444444445555544444333 3334554
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 598 NVRQITKEYSYQQAII 613 (705)
Q Consensus 598 ~~~~~~~el~l~~~ii 613 (705)
---.|..|+.-+.-++
T Consensus 113 vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 113 VKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4456666665554443
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.62 E-value=0.54 Score=43.54 Aligned_cols=17 Identities=29% Similarity=0.802 Sum_probs=14.5
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.++-||++|||||+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp EEEEESSSTTTTCHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56679999999999874
No 85
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.27 E-value=24 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 570 VSSMLLAAKEERKDVQRENRKEIEG 594 (705)
Q Consensus 570 ~~~~l~~~~~e~~d~~~e~~~e~e~ 594 (705)
+..++..+++|+.=+..-|..|+.+
T Consensus 88 LE~~iesL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333
No 86
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=83.27 E-value=23 Score=31.13 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN 598 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~ 598 (705)
+++.|.+.++.-+..|..+...+.+++.++.+...+....++..-..
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444443333333333333333
No 87
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.08 E-value=0.66 Score=46.90 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.4
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999876
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.00 E-value=18 Score=29.90 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~ 573 (705)
+.++++.+.+...|.++.++....+..+......|++|....+.+|..+..+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555556666666655566666666666666666666666655544
No 89
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.77 E-value=26 Score=31.39 Aligned_cols=86 Identities=13% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE----ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN 598 (705)
Q Consensus 523 ~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~----e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~ 598 (705)
.++.+.+.....|..+++........++..+...+. ++.....+|..+...+..++.++..... +-++|++-
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~----EYq~Llnv 111 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLR----EYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHH
Confidence 334444444444444444433333333333333222 2333344444455555555555544333 33344444
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 599 VRQITKEYSYQQAI 612 (705)
Q Consensus 599 ~~~~~~el~l~~~i 612 (705)
--.|..|+.-+.-+
T Consensus 112 Kl~Ld~EIatYRkL 125 (129)
T 3tnu_B 112 KLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 44566665544433
No 90
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.60 E-value=27 Score=31.38 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 546 ~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
+..+++++....+....+...-+++...+..++..+.|
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 91
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.41 E-value=5.8 Score=43.37 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=53.3
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G 159 (705)
-+||.|=+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|||||.+. .|..-.....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 57888888777667777777777653 3333 3 2356899999999999764 22222222347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--.+.+..+|.......
T Consensus 259 esek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGENA 275 (437)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 78899999998876654
No 92
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.23 E-value=0.42 Score=48.91 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=33.8
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCC---CCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSG---FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G---~N~tIfaYGqTgSGKT~Tm 148 (705)
..+|+.+.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|||||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 367888888665555565555555442 22222 3457889999999999876
No 93
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.59 E-value=0.39 Score=51.12 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=33.1
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHh----hCCCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKV----LSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~v----l~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35788888765555555555544443211 2244567899999999999876
No 94
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.38 E-value=0.32 Score=49.57 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=29.2
Q ss_pred eeEeeceeeCCCCChHHHHHhhh----hhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETA----RPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~----~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++||.+.+.+.....+.+.+. .+.+..+---....|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 34788888876554444332221 11122211111223889999999999986
No 95
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.32 E-value=0.48 Score=49.68 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=34.3
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhCCC---CEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLSGF---NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~---N~tIfaYGqTgSGKT~Tm 148 (705)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46888887766555666666556542 344442 246888999999999876
No 96
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.12 E-value=22 Score=29.30 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
+.+....+.+.+...+...+......++.+.+|+..+..++..+.+
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433333444443333333333333333
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.83 E-value=7.7 Score=35.02 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
+...+....+++..++..+.+...+.....+|+..+
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444445555555555544444444444444443
No 98
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.82 E-value=28 Score=30.38 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 589 RKEIEGFLDNVRQITKEY 606 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el 606 (705)
..++++|.+.++.|.+++
T Consensus 89 ~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 345666777776666654
No 99
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.58 E-value=6.4 Score=35.68 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
+...+....+++..++..+.++..+.....+|+..+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444455555444444444444444443333
No 100
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.36 E-value=0.35 Score=48.26 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.0
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999976
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.20 E-value=0.52 Score=49.62 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=23.9
Q ss_pred ChHHHHHhhhhhHHHHhh-CCCCEEEEEeccCCCCccccc
Q psy11229 110 KQLDIYNETARPIVDKVL-SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 110 tQ~~Vy~~~~~plV~~vl-~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++...+.+. ..+..++ .+...+++-||++|+|||+++
T Consensus 23 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 23 HREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444432 2233333 345567899999999999876
No 102
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.96 E-value=22 Score=39.19 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEI 592 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~ 592 (705)
+|+.++..|+++++..-..|+.|+.-|.....+|+.|+-.....+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666556666666666666666665554444443
No 103
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.95 E-value=1.4 Score=47.91 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=54.3
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--CC--CEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--GF--NGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G~--N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G 159 (705)
-+||.|-+-+.--+++-+.+..|+.. .++. |. .-.|+-||++|||||.+. .|+.-.....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 57888888877777888888888763 3443 32 345889999999999764 22222222347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--.+.+..+|.......
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 77899999998876653
No 104
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.59 E-value=6.1 Score=35.38 Aligned_cols=25 Identities=48% Similarity=0.670 Sum_probs=20.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhh
Q psy11229 416 NQDPKDALLIKYQKEISELKKKLEE 440 (705)
Q Consensus 416 n~~~~~~~l~~~~~ei~~Lk~~l~~ 440 (705)
..++.|.+|..|+.+|..|+.+|+.
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999988865
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.90 E-value=0.75 Score=50.48 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=28.8
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
..|+||....... +...+.. +..+... .|....+|-||++|+||||.+.
T Consensus 100 ~~~tfd~fv~g~~-n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGPG-NSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCTT-THHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCCc-hHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 3578987653333 3334432 2333332 2313357889999999999874
No 106
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.86 E-value=0.47 Score=47.54 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhC----CCCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLS----GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~----G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++|+.+.+.+..-+.+.+.+ ..+.. ..+. .....|+-||++|||||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 367888887665444444322 22211 1111 12346899999999999876
No 107
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.79 E-value=0.94 Score=44.01 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=18.6
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..++.|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 455677877 67889999999987
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.43 E-value=0.93 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=16.4
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334899999999999876
No 109
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.26 E-value=1.1 Score=42.90 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=17.9
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567766 567899999999654
No 110
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.24 E-value=0.62 Score=48.61 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=33.2
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhCCC---CEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLSGF---NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~---N~tIfaYGqTgSGKT~Tm 148 (705)
.+||.|.+.+.--+.+.+.+..|+.. .++.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888887666555566555555442 222332 346889999999999876
No 111
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.06 E-value=0.98 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=17.7
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..+++|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 345567876 56788999999987
No 112
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.60 E-value=48 Score=30.67 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy11229 551 EKYSSLQEES 560 (705)
Q Consensus 551 ~~~~~l~~e~ 560 (705)
.++..+.+++
T Consensus 82 ~ki~dLeeel 91 (152)
T 3a7p_A 82 QEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 113
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.59 E-value=0.34 Score=49.65 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=29.3
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhCCCC----EEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLSGFN----GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~N----~tIfaYGqTgSGKT~Tm 148 (705)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||++|||||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777777666566666666656542 2333222 22889999999999875
No 114
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.47 E-value=0.78 Score=47.02 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=16.5
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44457899999999999976
No 115
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=76.24 E-value=84 Score=34.51 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 559 ESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 559 e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
..+....++.+....|...-..+...+..+..++..+.+.+.+++.+
T Consensus 193 k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEee 239 (486)
T 3haj_A 193 KIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEK 239 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555555555566667777777777666655
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=76.15 E-value=74 Score=36.04 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.4
Q ss_pred hCCCCEEEEEeccCCCCccccc
Q psy11229 127 LSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 127 l~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+.+-...|...|.+|+|||+.|
T Consensus 34 i~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHH
Confidence 3555677889999999999765
No 117
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=76.07 E-value=19 Score=28.75 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 517 ~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
.+..++.+|.....+...|+..+.-+-.....+...+-++.-|...++.++.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444445555555444444443
No 118
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.60 E-value=1.1 Score=46.86 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=26.0
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|+.+++ |..+.+. +-..+-.|--..++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 4455443 2333334543337789999999999873
No 119
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.53 E-value=35 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
.++..++..+..+..++.++..+.++...+.
T Consensus 25 ~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 25 KMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555554444443
No 120
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.30 E-value=44 Score=29.60 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ---RENRKEIEGFLDNVRQITKEYSYQQA 611 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~---~e~~~e~e~~~~~~~~~~~el~l~~~ 611 (705)
+...++-.+.+++..++..+.|.+........++.++..+. .+.---+-++...+..|..||.+...
T Consensus 35 e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 35 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333333333333221 12222344555555555555554443
No 121
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.30 E-value=1.5 Score=48.42 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=52.6
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHH-HhhC--C--CCEEEEEeccCCCCccccc--------------cccCCCCCCCC
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVD-KVLS--G--FNGTIFAYGQTGTGKTFTM--------------EGVNNVPELKG 159 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~--G--~N~tIfaYGqTgSGKT~Tm--------------~G~~~~~~~~G 159 (705)
.+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||++|||||++. .|..-.....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 67888888776666777777777653 3443 3 2346889999999999764 22221122347
Q ss_pred chHHHHHHHHHhhhhcC
Q psy11229 160 IIPNSFAHIFGHIAKAD 176 (705)
Q Consensus 160 Iipr~~~~lF~~i~~~~ 176 (705)
--.+.+..+|.......
T Consensus 286 esek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 286 EGARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77889999998876653
No 122
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.02 E-value=1.3 Score=48.44 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=23.0
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+++..++..-.+.|...|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35556666667789999999999999983
No 123
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.99 E-value=34 Score=28.18 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~ 572 (705)
....|+-.+.+.+.++...|.++.+-.+|+..+++.|..-..
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 334455666666677777777777777776666665554333
No 124
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.86 E-value=11 Score=27.13 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
+|+....+.+....+||++++.|+.|...+.+.|
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4444555555666778889999998887776654
No 125
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.70 E-value=28 Score=38.36 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=0.0
Q ss_pred cCCCCCC
Q psy11229 652 KIVPLPE 658 (705)
Q Consensus 652 ~~~~~~~ 658 (705)
|-+|+..
T Consensus 206 KmrP~kD 212 (562)
T 3ghg_A 206 KMKPVPD 212 (562)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3345443
No 126
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.58 E-value=0.91 Score=48.23 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=33.1
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCCC---CEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSGF---NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~---N~tIfaYGqTgSGKT~Tm 148 (705)
..+|+.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 357888887666555666655555332 233332 235788999999999876
No 127
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.50 E-value=0.9 Score=48.73 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=32.9
Q ss_pred eeEeeceeeCCCCChHHHHHhhhhhHHH-HhhC---CCCEEEEEeccCCCCccccc
Q psy11229 97 KTFTFDTVFDANSKQLDIYNETARPIVD-KVLS---GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 97 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~---G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++||.+.+.+.--+.+...+..|+.. .++. .-...|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3467888887655445555555444431 1112 22357889999999999876
No 128
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.36 E-value=0.89 Score=44.96 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=19.2
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455677877 577999999999773
No 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=73.77 E-value=1.4 Score=43.59 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=18.6
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..++.|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455677877 67889999999986
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.39 E-value=1.8 Score=45.45 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCC-CE--EEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGF-NG--TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~-N~--tIfaYGqTgSGKT~Tm 148 (705)
|.++.+++ ++.....+ ...+..++.|. .. +++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l-~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQL-DILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHH-HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHH-HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34444444 34444433 23344444443 34 6889999999999876
No 131
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=73.18 E-value=48 Score=29.12 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
.-++-+.+...|...++..+.....|...|+..+.++ ...|.++......+..++..++.
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v---q~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV---QEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666666666666666666666665554 23333333333444444444433
No 132
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=72.88 E-value=1.3 Score=47.17 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=22.4
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+.+.+++.--.+.|.-.|+||||||.||.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 34555555666788999999999999983
No 133
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.88 E-value=0.94 Score=49.74 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=31.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCC---CCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSG---FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G---~N~tIfaYGqTgSGKT~Tm 148 (705)
..+||.|.+.+..-+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 367888877554444444444444332 23332 2346888999999999876
No 134
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.68 E-value=1.6 Score=45.85 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=30.7
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCE--EEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNG--TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~--tIfaYGqTgSGKT~Tm 148 (705)
.++||.+.+. ..+... +..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4568887764 333332 23455555566653 7889999999999876
No 135
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.63 E-value=1.7 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=18.3
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 455677877 566789999999863
No 136
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=71.55 E-value=1 Score=43.16 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=17.2
Q ss_pred HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+++|.+ ++..++||||||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456766 566899999999875
No 137
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.15 E-value=1.7 Score=42.11 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=18.2
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 455667877 566789999999764
No 138
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.43 E-value=1.2e+02 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=12.4
Q ss_pred EEeeCCCCCCHHHHHHHHH
Q psy11229 383 CATVGPASYNYEETISTLR 401 (705)
Q Consensus 383 I~~isP~~~~~~ETlsTLr 401 (705)
..+|+....+-+....=|+
T Consensus 277 ~~~I~~~sk~~eaA~~Fi~ 295 (471)
T 3mq9_A 277 SAGINAASPNKELAKEFLE 295 (471)
T ss_dssp EEEEBSSCSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
Confidence 3456666777777766665
No 139
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.18 E-value=2.2 Score=46.76 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=30.6
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHHHhhCCCC--EEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN--GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N--~tIfaYGqTgSGKT~Tm 148 (705)
.+.||.+.+ |+++.+.+ ..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777775 44554432 345566666653 35778999999999875
No 140
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.08 E-value=52 Score=28.17 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 525 l~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
+.........|...+.+....+...|.....+..|++.|+.-|
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666656666667777777777777776544
No 141
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.99 E-value=1.7 Score=48.46 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=30.4
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHH-----HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIV-----DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV-----~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..|+.+.+.+..-+.+.+.+..|+- ..+-......|+-||++|||||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666655444555555544422 1111234557899999999999875
No 142
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=69.86 E-value=1.8 Score=42.93 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=17.9
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567877 566789999999763
No 143
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.71 E-value=46 Score=27.41 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 524 ELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573 (705)
Q Consensus 524 el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~ 573 (705)
|+.+.+-+.++|+.+--+-+.....-.+.++.|++.++.+...++.+..+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333344444444444444445444443
No 144
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=69.59 E-value=97 Score=31.13 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy11229 567 LKKVSSMLLAAKEERKDV-QRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 567 l~~~~~~l~~~~~e~~d~-~~e~~~e~e~~~~~~~~~~~e 605 (705)
+.+....|...-...... ...+..++..+.+.+..++.+
T Consensus 181 ~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~ 220 (301)
T 2efk_A 181 AEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDER 220 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 444555566666655555533
No 145
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=69.20 E-value=2 Score=41.84 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=18.5
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4556688775 67899999999763
No 146
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=69.15 E-value=2.1 Score=43.43 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=16.7
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
.-...+.-.|+||||||.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34567888999999999987
No 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.00 E-value=1.4e+02 Score=32.71 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 539 IQEKDAERIDMEEKYSSLQEESEGLSKK 566 (705)
Q Consensus 539 l~~~~~e~~~~e~~~~~l~~e~~~~~~~ 566 (705)
++..+.....++..++.+..+++.+...
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e~~~~~ 157 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEMELHYNY 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3333333333444444444444333333
No 148
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.73 E-value=1.4 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=18.4
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
++..++.|.| +++.++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445566776 67899999999976
No 149
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.17 E-value=1.8 Score=44.68 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..++.|....++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 356667773344788999999999763
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.02 E-value=1.7 Score=45.42 Aligned_cols=20 Identities=50% Similarity=0.702 Sum_probs=16.6
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44557889999999999876
No 151
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.74 E-value=2.2 Score=44.94 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=27.5
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCC-CCEEEEEeccCCCCccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSG-FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G-~N~tIfaYGqTgSGKT~Tm 148 (705)
|.++.+++ ++...+.+. ..+..++.| ...+|+-||++|+|||+++
T Consensus 17 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 17 SVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44444444 344444432 334444443 3558999999999999876
No 152
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=67.47 E-value=1.7 Score=42.86 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=18.8
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455556675 4577899999999755
No 153
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.42 E-value=1.3e+02 Score=32.60 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
...|+++|.+.+....+++.+-++...-+-.|..-|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 344555555555555555555555444443343333
No 154
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=66.99 E-value=2.3 Score=42.49 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.1
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 455667876 566789999999863
No 155
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.96 E-value=18 Score=29.20 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY 553 (705)
Q Consensus 518 l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~ 553 (705)
+.....+|..+..+.++++..|+++++++..|...+
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555444444443333
No 156
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=66.78 E-value=2.4 Score=41.46 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.7
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..++.|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 345667877 46678999999977
No 157
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=66.74 E-value=40 Score=26.00 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
+++..|..-|+.+..+-+--+++.+|+..++++|.+++.+..
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 345555555555555666666666666666665555554433
No 158
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.71 E-value=2.6 Score=43.11 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=23.0
Q ss_pred hhHHHHhhCCC---CEEEEEeccCCCCccccc
Q psy11229 120 RPIVDKVLSGF---NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 120 ~plV~~vl~G~---N~tIfaYGqTgSGKT~Tm 148 (705)
...+..+++|. -.||+-||+.|||||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34467788887 347999999999999875
No 159
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=66.36 E-value=1.6e+02 Score=32.31 Aligned_cols=12 Identities=0% Similarity=0.152 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q psy11229 485 DHQSMVEKLELL 496 (705)
Q Consensus 485 ~~~~l~~k~~~l 496 (705)
.+++|..++..+
T Consensus 101 ~LqeLe~~l~~l 112 (464)
T 1m1j_B 101 VLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 160
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.06 E-value=2.4 Score=44.86 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=20.4
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34566778888 677999999999873
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.81 E-value=1.9 Score=44.87 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=25.7
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+|+.+++.+.- ...+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 46666654332 233344444553334888999999999876
No 162
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=65.59 E-value=2.2 Score=42.22 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=17.5
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.|. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445678774 56779999999873
No 163
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.30 E-value=1.8 Score=42.67 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=19.3
Q ss_pred HHHhhCCC--CEEEEEeccCCCCcccccc
Q psy11229 123 VDKVLSGF--NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 123 V~~vl~G~--N~tIfaYGqTgSGKT~Tm~ 149 (705)
+..++.|. ..+++-||+.|||||++..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34445553 2468999999999998764
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.76 E-value=2.6 Score=44.07 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.8
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4667999999999876
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.75 E-value=3.1 Score=37.66 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=15.8
Q ss_pred CEEEEEeccCCCCccccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~G 150 (705)
+..|+-||.+|||||+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGG
T ss_pred CCcEEEECCCCccHHHHHHH
Confidence 34477799999999987644
No 166
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=64.31 E-value=3.2 Score=45.80 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=26.9
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
.||.|.+. .+... .++..+-.+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 46666654 33332 334444345555678899999999998744
No 167
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=64.25 E-value=50 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~ 565 (705)
+.+.||.+++.+++|...++.
T Consensus 38 EYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666544443
No 168
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.24 E-value=1.8 Score=41.89 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=17.3
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..+++|.|+ +..++||||||.+
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 3455567764 6688999999986
No 169
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.96 E-value=69 Score=27.38 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy11229 486 HQSMVEKLELLQK 498 (705)
Q Consensus 486 ~~~l~~k~~~l~~ 498 (705)
++.+.+++..++.
T Consensus 7 ~e~lre~l~~le~ 19 (97)
T 2eqb_B 7 YNQLKEDYNTLKR 19 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 170
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.34 E-value=70 Score=27.22 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q psy11229 477 AELKRAQSDHQSMVEKLELLQ 497 (705)
Q Consensus 477 ~~~~~~~~~~~~l~~k~~~l~ 497 (705)
.++..+..+-..+...+..++
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lE 31 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVE 31 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444334444444443
No 171
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=63.21 E-value=2.8 Score=45.83 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=20.9
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777667789999999999976
No 172
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.20 E-value=78 Score=27.75 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEE 551 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~ 551 (705)
+.++...+...+.|...+.+.+....++|.
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 334444444444444444444333333333
No 173
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=62.71 E-value=1.3e+02 Score=30.12 Aligned_cols=40 Identities=3% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy11229 566 KLKKVSSMLLAAKEERKDV-QRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 566 ~l~~~~~~l~~~~~e~~d~-~~e~~~e~e~~~~~~~~~~~e 605 (705)
+..+....|...-...... ...+..++.++.+.+..++.+
T Consensus 187 ~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~ 227 (305)
T 2efl_A 187 MAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEER 227 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444 444555566665555555444
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.50 E-value=3.1 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=15.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999876
No 175
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.39 E-value=2.3 Score=47.51 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCCC----CEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSGF----NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~----N~tIfaYGqTgSGKT~Tm 148 (705)
.++||.|.+.+..-.++-+.+ ..+-. .++..+ ...|+-||++|||||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888887654433333322 11111 123322 223899999999999876
No 176
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.25 E-value=2.9 Score=44.78 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=20.8
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+++..+.-.-.+.|.-.|+||||||.+|
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 3444444445667889999999999988
No 177
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=62.21 E-value=52 Score=27.41 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
|++.+...--...+||.++.+|++|+..+.
T Consensus 54 LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 54 FRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444455666677777777665543
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=62.15 E-value=3.2 Score=42.38 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=25.8
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+|+.+.+ |+++.+.+ ..++ -.|....++-||++|+|||++..
T Consensus 23 ~~~~~~g----~~~~~~~l-~~~l---~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRL-KHYV---KTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHHH-HHHH---HHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHHH-HHHH---HcCCCCeEEEECcCCCCHHHHHH
Confidence 3555554 45555433 2222 33544458899999999998763
No 179
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=62.11 E-value=17 Score=30.90 Aligned_cols=46 Identities=7% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 563 LSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSY 608 (705)
Q Consensus 563 ~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~el~l 608 (705)
...++..-.++++.+..-+-++...|.+-++.+++.|..|.+||.-
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556677777788888889999999999999999998753
No 180
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.92 E-value=2.8 Score=42.58 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.2
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999876
No 181
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.41 E-value=3.2 Score=44.01 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=19.1
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..++.|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455677877 577899999999763
No 182
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=61.39 E-value=54 Score=26.92 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e 605 (705)
+.+.+...+.|++ -|++...+|..-+..+.++....++|..++..+|.-+.+.
T Consensus 16 l~E~~~q~qaEl~----sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 16 MKEEMDRAQAELN----ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444542 2334455555556666666666666666666666555544
No 183
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.38 E-value=1.1e+02 Score=34.61 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11229 588 NRKEIEGFLDNVRQITK 604 (705)
Q Consensus 588 ~~~e~e~~~~~~~~~~~ 604 (705)
|+.+.+.+...|..|.+
T Consensus 565 ~~~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQT 581 (592)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 184
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=61.05 E-value=29 Score=33.24 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 547 IDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 547 ~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
..+......|.++++.+..+++.+..++.+++.....
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444445555555555555555555443
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=60.92 E-value=2.4 Score=38.46 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+..|+-||.+|||||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34456788999999999865
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=60.84 E-value=2.2 Score=44.14 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.5
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999873
No 187
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.70 E-value=2.7 Score=42.88 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.8
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
.+.++-||++|||||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 368999999999999876
No 188
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.16 E-value=5.7 Score=40.68 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=20.4
Q ss_pred hhhHHHHhhCCC-----CEEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLSGF-----NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~G~-----N~tIfaYGqTgSGKT~Tm 148 (705)
...++..++.|+ ...|+..|++|||||+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 344455555443 356889999999999754
No 189
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=60.14 E-value=96 Score=27.77 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l 574 (705)
+...+|+..-+-..+-+....+........++.+..|..|....++++.+....|
T Consensus 29 EnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 29 ENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444433333334444444444444555666666666666666665544443
No 190
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=59.98 E-value=62 Score=25.84 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.|+..|..++.+ +..|++.+..+.+..+++..++-.+.-|-.
T Consensus 22 ~Lr~eL~~Ke~e-------I~~L~e~i~lk~kd~ErLNDEiislNIENN 63 (75)
T 3a7o_A 22 ILQKELKSKEQE-------IRRLKEVIALKNKNTERLNDELISGTIENN 63 (75)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhcccHHHhhHHHHHhHHHHH
Confidence 444444444444 444444455555555555555555544433
No 191
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.68 E-value=3.1 Score=43.88 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.0
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345666774455788899999999873
No 192
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=59.42 E-value=3.7 Score=45.10 Aligned_cols=44 Identities=20% Similarity=0.398 Sum_probs=28.6
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+||.+++ |+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3555554 5555532 234444444566568899999999999875
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.35 E-value=3.1 Score=42.32 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=16.5
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444888999999999876
No 194
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.32 E-value=4 Score=46.04 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+++.+..|.+.++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344455577665554 999999999864
No 195
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=59.24 E-value=3.1 Score=43.49 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|-...++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 44556673345678899999999763
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=59.20 E-value=3.4 Score=41.00 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=17.0
Q ss_pred HhhCCCCEEEEEeccCCCCcccccc
Q psy11229 125 KVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 125 ~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++++.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4555655 6678899999998753
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=59.07 E-value=4 Score=45.65 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.2
Q ss_pred hhCCCCEEEEEeccCCCCcccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+-.|.+ |.-.|+||||||.||.
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHHH
Confidence 345776 5678999999999873
No 198
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.97 E-value=1.2e+02 Score=28.51 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
..|+..|.+-...+....+.+..|+..+..+...++.+...+..+..+...+
T Consensus 72 ~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L 123 (168)
T 3o0z_A 72 YQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555444444444444433
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.94 E-value=4.4 Score=41.94 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=27.4
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhh--CCCCEEEEEeccCCCCccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVL--SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl--~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+|+.+.+ +..+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5666665 34444432 33444433 234456899999999999876
No 200
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.77 E-value=2.4 Score=47.03 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCC----CCEEEEEeccCCCCccccc
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSG----FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G----~N~tIfaYGqTgSGKT~Tm 148 (705)
.++|+.|.+.+..-+++.+.+ ..+-. ..+.+ ....|+-||++|||||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888887655444443322 11110 11111 2235889999999999875
No 201
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.41 E-value=38 Score=30.75 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 527 HRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567 (705)
Q Consensus 527 ~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l 567 (705)
........|...+.+-...+...|.....+..|++.++.-|
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555565555566666777777777777777654
No 202
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.39 E-value=2.6 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=21.6
Q ss_pred ChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 110 KQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 110 tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.|+++...+ ...+..|. .|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l----~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRL----LIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHH----HHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHH----HHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 344554433 33333443 57789999999999763
No 203
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.35 E-value=4 Score=41.63 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=17.6
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344557776 566789999999765
No 204
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.06 E-value=1.9e+02 Score=30.60 Aligned_cols=89 Identities=12% Similarity=0.225 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN-------------RKEIE-GFLDNVRQITKEYSYQQAII 613 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~-------------~~e~e-~~~~~~~~~~~el~l~~~ii 613 (705)
+|+.+|..|++.++..-..|+.|+.-+.....+|+.|+... .-+++ ++. .+..+.|+ |.+.+-
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e-~ye~qqKQ--L~qv~a 193 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLE-DYKNQQKQ--LEQVIA 193 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHH-HHHHHHHH--HHhhhh
Confidence 35555555555554444455555555555544444443322 22233 222 23333333 566666
Q ss_pred HhcCChH---HHHHHHhhcccccccCcee
Q psy11229 614 QKFIPTK---YLELMTQNATWNEDIGEWE 639 (705)
Q Consensus 614 ~~fiP~~---~~~ki~~~~~wdee~~~W~ 639 (705)
..+.|.. ++-.|+-+-.=|.--.+|+
T Consensus 194 ~~llP~~~~q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 194 INLLPSRDIQYLPILKMSTITGPVPREFK 222 (390)
T ss_pred hccccccccccccccccccccccCChhhc
Confidence 6667764 3444544444444444455
No 205
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.75 E-value=81 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 547 IDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 547 ~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.+|..++..|+.|+..+...++...-++..+++..+|.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444444443
No 206
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.57 E-value=30 Score=28.40 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
+..+..|.+.+-...+.|.++...+..+
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 207
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=57.54 E-value=3.6 Score=43.40 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=18.0
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 445567777 577899999999753
No 208
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=57.50 E-value=81 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKV 570 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~ 570 (705)
++....+.+..++++++..+++|+.+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555554444444443
No 209
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.88 E-value=34 Score=26.75 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGL 563 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~ 563 (705)
...+|....+..+.+...|+.+++.|+.|+..+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555333
No 210
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=56.71 E-value=5.4 Score=42.18 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred HHhhCC---CCEEEEE--eccCCCCccccc
Q psy11229 124 DKVLSG---FNGTIFA--YGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G---~N~tIfa--YGqTgSGKT~Tm 148 (705)
..+..| -...++- ||..|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 445555 5567888 999999999876
No 211
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.32 E-value=86 Score=26.05 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV---QRENRKEIEGFLDNVRQITKEYSY 608 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~---~~e~~~e~e~~~~~~~~~~~el~l 608 (705)
+|+.++.....+...++-.+.+++..++....|.+.-...-..+..++.-+ -.+.---+-+|...+..|..|+.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555554444444444444433 223333445555555555555543
No 212
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=56.13 E-value=4.5 Score=42.87 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=18.1
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455678774 67899999999753
No 213
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=56.10 E-value=6.4 Score=46.49 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=52.5
Q ss_pred eEeeceeeCCCCChHHHHHhhhhhHHH-HhhCCCC----EEEEEeccCCCCcccccccc--------------CCCCCCC
Q psy11229 98 TFTFDTVFDANSKQLDIYNETARPIVD-KVLSGFN----GTIFAYGQTGTGKTFTMEGV--------------NNVPELK 158 (705)
Q Consensus 98 ~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G~N----~tIfaYGqTgSGKT~Tm~G~--------------~~~~~~~ 158 (705)
..+||.|-+-+..-+++.+.+..|+.. .++.++. ..|+-||+.|||||...--. .-.....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467889888887777887777777763 5666554 36899999999999764211 0001123
Q ss_pred CchHHHHHHHHHhhhhc
Q psy11229 159 GIIPNSFAHIFGHIAKA 175 (705)
Q Consensus 159 GIipr~~~~lF~~i~~~ 175 (705)
|-....+..+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 56667788888776543
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=55.58 E-value=6 Score=39.47 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHhhhhhHHHHhhCCC-CEEEEEeccCCCCccccc
Q psy11229 113 DIYNETARPIVDKVLSGF-NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 113 ~Vy~~~~~plV~~vl~G~-N~tIfaYGqTgSGKT~Tm 148 (705)
.+|+.+...++.....+. ...|+..|++|||||+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 455555444444333322 346889999999999753
No 215
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=55.51 E-value=96 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11229 591 EIEGFLDNVRQITKEY 606 (705)
Q Consensus 591 e~e~~~~~~~~~~~el 606 (705)
+++++...++.+.+++
T Consensus 69 eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREF 84 (94)
T ss_dssp TTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666665553
No 216
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.36 E-value=2.4e+02 Score=30.92 Aligned_cols=6 Identities=0% Similarity=-0.125 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy11229 620 KYLELM 625 (705)
Q Consensus 620 ~~~~ki 625 (705)
+.+++.
T Consensus 146 ~a~~~~ 151 (497)
T 3iox_A 146 SAVDDA 151 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 217
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.88 E-value=63 Score=25.23 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 542 KDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEER 581 (705)
Q Consensus 542 ~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~ 581 (705)
+.++...++.+...|..+...|..++..+..++..++.-+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666655555443
No 218
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.59 E-value=11 Score=42.78 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=20.2
Q ss_pred CCeeEeeceeeCCCCC----hHHHH-HhhhhhHHHHhhCCCCE
Q psy11229 95 PPKTFTFDTVFDANSK----QLDIY-NETARPIVDKVLSGFNG 132 (705)
Q Consensus 95 ~~~~F~FD~Vf~~~~t----Q~~Vy-~~~~~plV~~vl~G~N~ 132 (705)
.+..|.|-.-|.+... .+++. .-....+..+++.|.-.
T Consensus 74 ~~~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~ 116 (575)
T 2i1j_A 74 NPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIY 116 (575)
T ss_dssp SSEEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCeEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCC
Confidence 3456777666655432 12222 22335667777777654
No 219
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=54.33 E-value=1.2e+02 Score=26.94 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 512 EIQQQLLDAAAQELEHRK 529 (705)
Q Consensus 512 ~~q~~~l~~~~~el~~~~ 529 (705)
..++...+...+.|.+.+
T Consensus 30 nqeka~AE~A~~~L~~~~ 47 (119)
T 2avr_X 30 NEERAQADAARQALAQNE 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455555443
No 220
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=53.23 E-value=1.4e+02 Score=27.64 Aligned_cols=13 Identities=54% Similarity=0.567 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy11229 556 LQEESEGLSKKLK 568 (705)
Q Consensus 556 l~~e~~~~~~~l~ 568 (705)
+.+++..++.+|+
T Consensus 75 yEeqIk~L~~kLK 87 (155)
T 2efr_A 75 YEEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.13 E-value=3.3 Score=49.29 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
..++..+..+....++-||++|+|||+.+.+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 3344444455555578899999999998754
No 222
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=52.54 E-value=5.8 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=18.8
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3456677877 566789999999764
No 223
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.26 E-value=22 Score=40.32 Aligned_cols=18 Identities=6% Similarity=0.377 Sum_probs=12.3
Q ss_pred eCCCCChHHHHHhhhhhH
Q psy11229 105 FDANSKQLDIYNETARPI 122 (705)
Q Consensus 105 f~~~~tQ~~Vy~~~~~pl 122 (705)
+++.++=.+|++.++..|
T Consensus 20 vd~~tt~~ell~~V~~~L 37 (575)
T 2i1j_A 20 IQQTTTGKQLFDQVVKTI 37 (575)
T ss_dssp EETTCBHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHc
Confidence 456677778888777544
No 224
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=52.23 E-value=5.6 Score=38.69 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=22.1
Q ss_pred hhhHHHHhhCC-C--CEEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLSG-F--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~G-~--N~tIfaYGqTgSGKT~Tm 148 (705)
.-|-++.++.| + ...+.-+|++|||||+.+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 34567777754 2 346778999999999876
No 225
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.03 E-value=5.6 Score=42.40 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 455567876 57899999999984
No 226
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.86 E-value=5.4 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.2
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|.-..++-||++|+|||++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333888999999999876
No 227
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.61 E-value=3.5 Score=41.72 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=15.8
Q ss_pred HhhCCCCEEEEEeccCCCCcccccc
Q psy11229 125 KVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 125 ~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++.|.++ +..++||||||.+..
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHHH
Confidence 34445444 339999999998763
No 228
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.60 E-value=38 Score=27.80 Aligned_cols=39 Identities=5% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 539 IQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 539 l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
+.-++.-+..|...+...+.+++.++++++.+..++.+.
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444444444444444444444433
No 229
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=51.10 E-value=6.9 Score=43.64 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=20.3
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
++..++.|-+..+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45556666666789999999999986
No 230
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=51.07 E-value=5.1 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=19.1
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+..++.|.+..++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4566777444567899999999987
No 231
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=51.00 E-value=6 Score=42.79 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=18.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
.+..++.|.+ +++.++||||||.+
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3455678877 57788999999985
No 232
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.92 E-value=1.5e+02 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11229 588 NRKEIEGFLDNVRQITKEYSYQQAIIQK 615 (705)
Q Consensus 588 ~~~e~e~~~~~~~~~~~el~l~~~ii~~ 615 (705)
-++++..+......|.++++=...+|+.
T Consensus 106 ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 106 ARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.86 E-value=14 Score=43.53 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=37.9
Q ss_pred CeeEeeceeeCCCCChHHHHHhhhhhHHH-HhhCC----CCEEEEEeccCCCCccccc
Q psy11229 96 PKTFTFDTVFDANSKQLDIYNETARPIVD-KVLSG----FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 96 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plV~-~vl~G----~N~tIfaYGqTgSGKT~Tm 148 (705)
...++||.+.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34588999998887777777777666553 23332 2346888999999999875
No 234
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.72 E-value=6.8 Score=40.05 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred eeceeeCCCCChHHHHHhhhhhHHHHhh--CCCCEEEEEeccCCCCccccc
Q psy11229 100 TFDTVFDANSKQLDIYNETARPIVDKVL--SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 100 ~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl--~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+|+.+.+.+ .+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~~----~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQE----RLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSCH----HHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCHH----HHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 567666543 333222 23333322 234456888999999999876
No 235
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.68 E-value=62 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKKVSSMLLAAKEERKDV 584 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~ 584 (705)
.++.++..+..+..++-..|..+..++..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 236
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.38 E-value=1.1e+02 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11229 584 VQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615 (705)
Q Consensus 584 ~~~e~~~e~e~~~~~~~~~~~el~l~~~ii~~ 615 (705)
+..-+..+++++...|..+..+-.-...=|++
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554444444444
No 237
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=50.12 E-value=5.8 Score=45.50 Aligned_cols=26 Identities=38% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
|..++..-. ..+-.|+.|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 444443333 34568999999999974
No 238
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.53 E-value=5.3 Score=41.53 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=13.8
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999986
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=49.26 E-value=6.9 Score=37.52 Aligned_cols=28 Identities=36% Similarity=0.395 Sum_probs=19.2
Q ss_pred hHHHHhhC-CC--CEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLS-GF--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~-G~--N~tIfaYGqTgSGKT~Tm 148 (705)
+-++.++. |+ ...+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566664 33 235666899999999876
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.23 E-value=9.7 Score=36.55 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=19.1
Q ss_pred hhHHHHhhC--CCCEEEEEeccCCCCccccc
Q psy11229 120 RPIVDKVLS--GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 120 ~plV~~vl~--G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33446667899999999876
No 241
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.14 E-value=5 Score=41.45 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.4
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34567888999999999865
No 242
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=49.01 E-value=9.5 Score=44.01 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=31.6
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
|.+.. |.|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 34443 3777888777654 46666667543 34579999999999964
No 243
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.56 E-value=4.3 Score=42.49 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=18.0
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445566776 467899999999873
No 244
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=47.80 E-value=8.6 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=18.9
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
+|+.++.|.+ +++.++||||||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 3456677888 57789999999975
No 245
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.69 E-value=66 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 547 IDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578 (705)
Q Consensus 547 ~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~ 578 (705)
..++.++..|..+...+..++..+..++..++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444444444444333
No 246
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.63 E-value=9.9 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=15.1
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999875
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=47.60 E-value=5.4 Score=37.24 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.4
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56679999999998874
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=47.47 E-value=7.4 Score=37.14 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=22.1
Q ss_pred hhHHHHhhC-CC--CEEEEEeccCCCCccccc
Q psy11229 120 RPIVDKVLS-GF--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 120 ~plV~~vl~-G~--N~tIfaYGqTgSGKT~Tm 148 (705)
-+-++.++. |+ ...+.-+|.+|||||..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 356777776 44 346888999999999876
No 249
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.33 E-value=11 Score=39.29 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999876
No 250
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.26 E-value=1.7e+02 Score=27.72 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 508 LEKAEIQQQLLDAAAQEL 525 (705)
Q Consensus 508 ~~~~~~q~~~l~~~~~el 525 (705)
++-+.+|++.+++..++.
T Consensus 66 LnLT~EQq~ql~~I~~e~ 83 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDY 83 (175)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 344455655555554433
No 251
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.12 E-value=7.7 Score=42.74 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.2
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567877 566889999999774
No 252
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.94 E-value=6.5 Score=40.51 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++.|.. .++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 44455633 3567899999999874
No 253
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.91 E-value=9.1 Score=41.82 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 107 ANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 107 ~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
-+..|.+++..+. ..+..| .+.++..|..|||||+++
T Consensus 26 Ln~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 26 LTEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CCHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 3557877776553 233333 347899999999999876
No 254
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.72 E-value=2.1e+02 Score=31.60 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy11229 596 LDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 596 ~~~~~~~~~el~l~~~ii~~f 616 (705)
.+.+.+++.++.-..+-|-|+
T Consensus 136 ~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 136 YPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 333334444443344444444
No 255
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=46.67 E-value=6.6 Score=42.88 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
++..+++|.+. +++.|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 35667888775 56789999999986
No 256
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=46.53 E-value=5 Score=45.81 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.0
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567889999999999874
No 257
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.37 E-value=97 Score=25.93 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 529 ~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
+.+..+++......+.+...|..++..|..|+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=46.26 E-value=7.8 Score=37.75 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=17.4
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+++++-.|--. .-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHhccCCCEE--EEECCCCCCHHHHH
Confidence 44445556544 44899999999876
No 259
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=46.23 E-value=1.3e+02 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=10.1
Q ss_pred hcccccccCcee
Q psy11229 628 NATWNEDIGEWE 639 (705)
Q Consensus 628 ~~~wdee~~~W~ 639 (705)
-..||++.+.|+
T Consensus 110 liGyD~eee~w~ 121 (122)
T 3viq_A 110 LMSFDEENGDWK 121 (122)
T ss_dssp TSCEETTTTEEC
T ss_pred HcCCCCcccccC
Confidence 468999999996
No 260
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=45.97 E-value=7.7 Score=43.22 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
++..++.|. .|+-||++|+|||+...
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 334444554 57889999999998764
No 261
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=45.92 E-value=5.4 Score=42.21 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=15.3
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456888999999999875
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=45.14 E-value=8.2 Score=37.07 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=21.4
Q ss_pred hhHHHHhhC-CC--CEEEEEeccCCCCccccc
Q psy11229 120 RPIVDKVLS-GF--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 120 ~plV~~vl~-G~--N~tIfaYGqTgSGKT~Tm 148 (705)
-+-++.++. |+ ...+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 456677774 33 346778999999999875
No 263
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=44.83 E-value=8.7 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567877 466799999999763
No 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.64 E-value=5.1 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.3
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
|..++..|+||||||++|
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 334566899999999987
No 265
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=43.98 E-value=7.9 Score=44.25 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=15.4
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
..++..|++|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3567799999999999743
No 266
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=43.79 E-value=6.2 Score=39.33 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.1
Q ss_pred CEEEEEeccCCCCccccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~G 150 (705)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35699999999999999864
No 267
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=43.65 E-value=1.7e+02 Score=25.85 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy11229 514 QQQLLDAAAQELEHR 528 (705)
Q Consensus 514 q~~~l~~~~~el~~~ 528 (705)
+++..+...+.|.+.
T Consensus 32 eka~AE~A~~~La~~ 46 (119)
T 3etw_A 32 ERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 268
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=43.63 E-value=10 Score=42.54 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=19.5
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
++..++.|-+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34555655556678899999999986
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=43.62 E-value=7.2 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 270
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.53 E-value=1.1e+02 Score=25.32 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNIQEKDAERIDME------EKYSSLQEESEGLSKKLKKVSSMLLAAKE 579 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e------~~~~~l~~e~~~~~~~l~~~~~~l~~~~~ 579 (705)
..+++++..-.+++.|+..+...++.+.+-. .++..+..+.+.+...|..+...+..+..
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 271
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.51 E-value=1.4e+02 Score=28.62 Aligned_cols=9 Identities=33% Similarity=1.114 Sum_probs=4.1
Q ss_pred ccccccCce
Q psy11229 630 TWNEDIGEW 638 (705)
Q Consensus 630 ~wdee~~~W 638 (705)
.+.++.+-|
T Consensus 89 ~~ed~~~~~ 97 (190)
T 4emc_A 89 SYEDDSGLW 97 (190)
T ss_dssp CCCCSSCEE
T ss_pred EEEcCCCeE
Confidence 344444444
No 272
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.49 E-value=1.4e+02 Score=24.86 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 545 e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
....++.+...|..|...|..++..+..++..+
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555554444444443333
No 273
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=43.46 E-value=7.6 Score=42.23 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.9
Q ss_pred hhCCCCEEEEEeccCCCCccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|++-.|...|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999865
No 274
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=43.45 E-value=2.8e+02 Score=28.18 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 512 EIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERI---------DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 512 ~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~---------~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
...++.+.++..-+++.+.+...+-++++....... .--+.+.+..+.-+.+..|.......|+..-.+..
T Consensus 122 ~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~ 201 (279)
T 3qwe_A 122 MKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREAN 201 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666555555555553211100 00112222222223344555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc---------CChHHHHHHHhhcccc
Q psy11229 583 DVQRENRKEIEGFLDNVRQITKE--YSYQQAIIQKF---------IPTKYLELMTQNATWN 632 (705)
Q Consensus 583 d~~~e~~~e~e~~~~~~~~~~~e--l~l~~~ii~~f---------iP~~~~~ki~~~~~wd 632 (705)
....+...-+......+++|-.| .-|+...|..| .|..+....+...-|+
T Consensus 202 ~~r~eL~~tk~~~v~~Lr~LI~e~D~~lk~~t~~~fq~~~~~~~~~p~~~~~L~e~~~~y~ 262 (279)
T 3qwe_A 202 ARQQDLEIAKQRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAPFE 262 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCCCC
Confidence 55555555566666666666666 34445445544 2445566666655664
No 275
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=43.17 E-value=3.7e+02 Score=29.49 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 487 QSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKK 566 (705)
Q Consensus 487 ~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~ 566 (705)
..+..|+++|+... ++......-..++++..-.+|++..+-...-...-+..+.+...++..+.++..=+..-+++
T Consensus 93 ~~~~~Kl~eLE~e~----k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~ 168 (526)
T 3iyk_A 93 RGIQAKLKELEDEQ----RNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQ 168 (526)
T ss_pred HHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 567 LKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601 (705)
Q Consensus 567 l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~ 601 (705)
|.++..-|+--..++..-....-.+..+-.+.+++
T Consensus 169 l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~ 203 (526)
T 3iyk_A 169 MRRLATALQKEIGERTHAETVMVKEYRDKIDALKN 203 (526)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
No 276
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=43.08 E-value=1.5e+02 Score=27.30 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 503 GGENLLEKAEIQQQLLDAA----AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 503 ~~~~~~~~~~~q~~~l~~~----~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
.++.+....++-...+.++ ..|++++++....|.......++.....++.+..+++..+....--+++...+..+
T Consensus 69 ~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 277
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.98 E-value=6.6 Score=41.34 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=14.9
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...|+-||++|||||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346788999999999865
No 278
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=42.83 E-value=8.9 Score=41.62 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++.|.+ ++..|+||||||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34555544 667899999999875
No 279
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=42.75 E-value=13 Score=38.40 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.9
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..+.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778899999999987
No 280
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.66 E-value=9.9 Score=44.32 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
+++.+.......++-||.+|+|||+.+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 44444444555678899999999998754
No 281
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.52 E-value=9 Score=43.92 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=18.3
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..+++|.| ++..++||||||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 445566877 577899999999764
No 282
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.51 E-value=42 Score=26.94 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKKVSSML 574 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~~~~~l 574 (705)
++.....+..|++.|...+..+..++
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 283
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.33 E-value=11 Score=44.17 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm~G 150 (705)
++..+..+....++-||++|+|||....+
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 34444445555688899999999987643
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=41.93 E-value=8.8 Score=37.25 Aligned_cols=28 Identities=39% Similarity=0.644 Sum_probs=19.7
Q ss_pred hHHHHhhCC-C--CEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSG-F--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G-~--N~tIfaYGqTgSGKT~Tm 148 (705)
+-++.++.| + ...+.-+|.+|||||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345666543 2 346778999999999874
No 285
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.71 E-value=1.1e+02 Score=23.11 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy11229 567 LKKVSSMLLAA 577 (705)
Q Consensus 567 l~~~~~~l~~~ 577 (705)
+..+...+..+
T Consensus 35 ~~~~~~~l~~~ 45 (60)
T 3htk_A 35 INEIFEKLNTI 45 (60)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=41.71 E-value=16 Score=38.24 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.3
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778999999999987
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.62 E-value=7.5 Score=36.75 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.38 E-value=7.6 Score=37.40 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5667899999999876
No 289
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.14 E-value=35 Score=27.18 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 534 ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574 (705)
Q Consensus 534 ~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l 574 (705)
++...+..+++.+.+||..+..-.+++..++.+|.|+.+-+
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555555555555555544443
No 290
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=41.13 E-value=7.5 Score=38.50 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=16.6
Q ss_pred CEEEEEeccCCCCccccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~G 150 (705)
...++-||.+|||||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678899999999998765
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=41.13 E-value=7.8 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.3
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999865
No 292
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=40.99 E-value=1.2e+02 Score=24.79 Aligned_cols=10 Identities=0% Similarity=0.169 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy11229 595 FLDNVRQITK 604 (705)
Q Consensus 595 ~~~~~~~~~~ 604 (705)
....++.+.+
T Consensus 67 AraDL~~l~r 76 (90)
T 4b6x_A 67 ARADLADLQR 76 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 293
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.96 E-value=16 Score=42.52 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=15.1
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
+.|+-||++|+|||++.
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999875
No 294
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=40.80 E-value=5.3 Score=43.18 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.7
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
+..++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566788999999999986
No 295
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.11 E-value=2.2e+02 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
...+++..++..-+...|...++.....+.++..|.+++......|+.
T Consensus 72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444555555555555444444443
No 296
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.78 E-value=12 Score=41.47 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.1
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47888999999999886
No 297
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.59 E-value=4e+02 Score=28.90 Aligned_cols=12 Identities=8% Similarity=0.354 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEES 560 (705)
Q Consensus 549 ~e~~~~~l~~e~ 560 (705)
|+.++.-|++.+
T Consensus 116 Le~ri~yIK~kV 127 (491)
T 1m1j_A 116 LRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 298
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=39.59 E-value=8.2 Score=39.79 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=16.7
Q ss_pred HhhCCCCEEEEEeccCCCCccccc
Q psy11229 125 KVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 125 ~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++.|++-.|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 299
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=39.47 E-value=9.3 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.7
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
+..++..|..|||||+|+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567779999999999874
No 300
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.43 E-value=1.1e+02 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
++|++...|+.-++.++-++.++..++.+.+..++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777776666555
No 301
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.41 E-value=1.3e+02 Score=25.75 Aligned_cols=22 Identities=9% Similarity=0.350 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy11229 479 LKRAQSDHQSMVEKLELLQKKV 500 (705)
Q Consensus 479 ~~~~~~~~~~l~~k~~~l~~~~ 500 (705)
++.+..+...|.++++.|+.++
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444443333
No 302
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=39.28 E-value=7.4 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.2
Q ss_pred EEEEeccCCCCccccccc
Q psy11229 133 TIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~G 150 (705)
.++-||..|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999998754
No 303
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.12 E-value=10 Score=40.38 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=17.3
Q ss_pred HHHhhCCCCEEEEEeccCCCCcccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4455667 34567899999998763
No 304
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.09 E-value=1.2e+02 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11229 591 EIEGFLDNVRQITKEYSYQQAIIQKFI 617 (705)
Q Consensus 591 e~e~~~~~~~~~~~el~l~~~ii~~fi 617 (705)
++.++.+.+.+++.++.-..+-|-|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444445555555544444455543
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=39.08 E-value=9.4 Score=35.05 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|+..|.+|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35888999999999743
No 306
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.07 E-value=63 Score=29.30 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy11229 491 EKLELLQ 497 (705)
Q Consensus 491 ~k~~~l~ 497 (705)
.++..+.
T Consensus 32 ~~l~~l~ 38 (135)
T 2e7s_A 32 EDYNTLK 38 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 307
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=38.95 E-value=8.1 Score=43.90 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.4
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
++.++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 5567889999999999984
No 308
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.67 E-value=19 Score=42.74 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=15.5
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=38.37 E-value=8.6 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-.|.+|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999865
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.32 E-value=9.8 Score=35.37 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcccc
Q psy11229 133 TIFAYGQTGTGKTFT 147 (705)
Q Consensus 133 tIfaYGqTgSGKT~T 147 (705)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=38.26 E-value=9.2 Score=36.16 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.8
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 312
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.22 E-value=1.3e+02 Score=22.66 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 555 SLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 555 ~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
.|...++.+..-|+....++..+++++.
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444443
No 313
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=38.22 E-value=1.8e+02 Score=24.39 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=10.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy11229 479 LKRAQSDHQSMVEKLELLQKKV 500 (705)
Q Consensus 479 ~~~~~~~~~~l~~k~~~l~~~~ 500 (705)
+...+.....+..=+...+..+
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l 25 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTF 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=38.03 E-value=8.9 Score=36.10 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.5
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445899999999876
No 315
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=37.97 E-value=1.6e+02 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582 (705)
Q Consensus 548 ~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~ 582 (705)
++|+++..|+.-++.++-++.++..++.+.+..++
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666655544
No 316
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.85 E-value=20 Score=41.78 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.4
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 67999999999999876
No 317
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=37.81 E-value=14 Score=42.31 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=17.0
Q ss_pred HHhhCCCCEEEEEeccCCCCcccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
..++.|.| ++..++||||||..
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHH
Confidence 44567877 46788999999975
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.43 E-value=10 Score=34.90 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=13.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|.+|||||+..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999754
No 319
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=36.98 E-value=3.4e+02 Score=27.29 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HH------HHHHHHhc-CCh-----HHHHHHHhhcccc
Q psy11229 567 LKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE-Y-SY------QQAIIQKF-IPT-----KYLELMTQNATWN 632 (705)
Q Consensus 567 l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e-l-~l------~~~ii~~f-iP~-----~~~~ki~~~~~wd 632 (705)
..+....|...-..+......+..++..+.+.+..++.+ + .+ ...+++.. .|. +.+...-..+..+
T Consensus 208 ~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~ 287 (312)
T 3abh_A 208 VLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAV 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSTTHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhCChH
Confidence 334445555555555556666666666666666555543 1 22 22223332 232 2244445566777
Q ss_pred cccCceeec
Q psy11229 633 EDIGEWELK 641 (705)
Q Consensus 633 ee~~~W~l~ 641 (705)
.|...|.-.
T Consensus 288 ~Di~~fi~~ 296 (312)
T 3abh_A 288 EDLRWFRAN 296 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777643
No 320
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=36.84 E-value=9.2 Score=36.56 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999887
No 321
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.75 E-value=12 Score=44.17 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.0
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346789999999999974
No 322
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.45 E-value=2.1e+02 Score=24.67 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d 583 (705)
.....++++.+..++.|...+.+.++.+...+..++.++..
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544444444444443
No 323
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.36 E-value=1.6e+02 Score=32.62 Aligned_cols=11 Identities=0% Similarity=0.157 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQ 530 (705)
Q Consensus 520 ~~~~el~~~~~ 530 (705)
+...++++.+.
T Consensus 81 ~~~~~~~~l~~ 91 (501)
T 1wle_A 81 QLREQIRSLEE 91 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 324
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=36.33 E-value=19 Score=38.17 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=15.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778999999999987
No 325
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=36.32 E-value=11 Score=39.15 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.2
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999987
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.00 E-value=10 Score=35.13 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999864
No 327
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.99 E-value=1.7e+02 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~ 569 (705)
+..+..-+.+-+.+...++.
T Consensus 27 e~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 27 EQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 328
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=35.98 E-value=2.1e+02 Score=24.69 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 526 EHRKQKEEELKKNIQEKDAERIDMEE------KYSSLQEESEGLSKKLKKVSSMLLAAKEE 580 (705)
Q Consensus 526 ~~~~~~~~~l~~~l~~~~~e~~~~e~------~~~~l~~e~~~~~~~l~~~~~~l~~~~~e 580 (705)
.+.++....++..|+..+......+. ...........+.+++..++..++.++.+
T Consensus 57 ~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~ 117 (127)
T 1ez3_A 57 SDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666655544433221 11223444566677777766666654433
No 329
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.87 E-value=10 Score=38.40 Aligned_cols=19 Identities=37% Similarity=0.607 Sum_probs=15.5
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456788999999999876
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=35.78 E-value=11 Score=35.68 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999765
No 331
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=35.59 E-value=13 Score=43.95 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=15.6
Q ss_pred EEEEEeccCCCCccccccc
Q psy11229 132 GTIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~G 150 (705)
..++..|+.|||||+|+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 3567899999999999754
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.57 E-value=19 Score=36.85 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=15.6
Q ss_pred CCCEEEEEeccCCCCccccc
Q psy11229 129 GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 129 G~N~tIfaYGqTgSGKT~Tm 148 (705)
+-...|.-.|.+|||||+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456777899999999875
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=35.19 E-value=11 Score=35.25 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999876
No 334
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.11 E-value=30 Score=34.74 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 550 EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 550 e~~~~~l~~e~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
+.++..++.++..+..+.+++...++.++.|+..+++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666655555555555554433
No 335
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.06 E-value=21 Score=41.03 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=53.5
Q ss_pred EeeceeeCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccccccC---CCCCCCCch--HHHHHHHHHhhh
Q psy11229 99 FTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVN---NVPELKGII--PNSFAHIFGHIA 173 (705)
Q Consensus 99 F~FD~Vf~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~~~~GIi--pr~~~~lF~~i~ 173 (705)
|....-|.|...|..-+.. ++..+-.|... ....|.|||||||||...- ..|- -=|. ......+++.+.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~-lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPT-LVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCE-EEECSSHHHHHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHHH
Confidence 6666778889999887755 45666667533 3456999999999996421 1110 0011 123445565555
Q ss_pred hcCCCceEEEEEEEEEEEcC
Q psy11229 174 KADESVKFLVRVSYFEIYNE 193 (705)
Q Consensus 174 ~~~~~~~~~V~vS~~EIynE 193 (705)
..-++.....+.||+.-|.-
T Consensus 79 ~~~~~~~v~~fps~yd~~~p 98 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYYQP 98 (661)
T ss_dssp HHCTTSEEEEECCCEEEEEC
T ss_pred HHcCCCcEEEccccccccCc
Confidence 54333456667787766653
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=35.03 E-value=11 Score=36.65 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=13.8
Q ss_pred EEEEeccCCCCcccccc
Q psy11229 133 TIFAYGQTGTGKTFTME 149 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~ 149 (705)
.+.-.|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998873
No 337
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.94 E-value=2.3e+02 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 549 ~e~~~~~l~~e~~~~~~~l~~ 569 (705)
|+..+..|+...+.+...|+.
T Consensus 40 Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 338
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.84 E-value=1.6e+02 Score=23.98 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 531 KEEELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 531 ~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
+..+++......+.+...|..++..|..|+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 339
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=34.74 E-value=13 Score=36.21 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999876
No 340
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=34.69 E-value=13 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=14.5
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTF 146 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~ 146 (705)
+|.......--..|-||+.|||||.
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKST 35 (195)
T ss_dssp --------CCEEEEEEECTTSCHHH
T ss_pred ccccCCCCceEEEEEECCCCCcHHH
Confidence 4444444445578999999999993
No 341
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.28 E-value=53 Score=23.17 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 552 KYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 552 ~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
.+..|+.|.+.++++|..+..+++++
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666654
No 342
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=34.23 E-value=20 Score=41.50 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.3
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|.||+.-|-+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999774
No 343
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=34.15 E-value=11 Score=38.85 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=14.7
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999973
No 344
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.89 E-value=1.7e+02 Score=32.27 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11229 590 KEIEGFLDNVRQITKEYSYQQAIIQKFI 617 (705)
Q Consensus 590 ~e~e~~~~~~~~~~~el~l~~~ii~~fi 617 (705)
.++.++.+.+.+++.++.-..+-|-|+.
T Consensus 85 ~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 85 NEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455555556666666655555555553
No 345
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=33.89 E-value=11 Score=42.07 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+|..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34556678774 55689999999753
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.77 E-value=16 Score=34.61 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.1
Q ss_pred CCEEEEEeccCCCCccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm 148 (705)
-...|+-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999765
No 347
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=33.66 E-value=12 Score=35.82 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.2
Q ss_pred hhCCCCEEEEEeccCCCCccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+-.|- ++.-.|++|||||.++
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCC--EEEEECCCCCCHHHHH
Confidence 34454 3445799999999876
No 348
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=33.65 E-value=2.1e+02 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 520 AAAQELEHRKQKEEELKKNI 539 (705)
Q Consensus 520 ~~~~el~~~~~~~~~l~~~l 539 (705)
..+.+-+.+.++..+++..+
T Consensus 36 ~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 36 SLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 349
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=33.62 E-value=10 Score=36.52 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=15.5
Q ss_pred EEEEeccCCCCccccccc
Q psy11229 133 TIFAYGQTGTGKTFTMEG 150 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm~G 150 (705)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988765
No 350
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=33.55 E-value=15 Score=37.40 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=15.1
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999876
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.35 E-value=21 Score=39.67 Aligned_cols=17 Identities=41% Similarity=0.516 Sum_probs=14.7
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36778899999999987
No 352
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=33.25 E-value=16 Score=44.22 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhc---CChHHHHHHHhhccccccc
Q psy11229 604 KEYSYQQAIIQKF---IPTKYLELMTQNATWNEDI 635 (705)
Q Consensus 604 ~el~l~~~ii~~f---iP~~~~~ki~~~~~wdee~ 635 (705)
.||-+-.+|.+++ ..|+++.-+.....|.+-.
T Consensus 835 ~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~ 869 (997)
T 4a4z_A 835 YELVLTELILDNFLGSFEPEEIVALLSVFVYEGKT 869 (997)
T ss_dssp CHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCC
T ss_pred cHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccC
Confidence 5788889999997 4578999999999998755
No 353
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=33.22 E-value=3.3e+02 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11229 569 KVSSMLLAAKEERKDVQREN-----RKEIEGFLDNVRQITKEYSYQQAIIQK 615 (705)
Q Consensus 569 ~~~~~l~~~~~e~~d~~~e~-----~~e~e~~~~~~~~~~~el~l~~~ii~~ 615 (705)
++........++-.++.+.| ..+..+++.+++...+.+.+...=.+.
T Consensus 132 ~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~r 183 (192)
T 2p22_C 132 KLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLAT 183 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443 467888888888888887777654443
No 354
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=33.17 E-value=12 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.3
Q ss_pred CCEEEEEeccCCCCcccccc
Q psy11229 130 FNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 130 ~N~tIfaYGqTgSGKT~Tm~ 149 (705)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 36678889999999999985
No 355
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.12 E-value=1.7e+02 Score=28.61 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKK 569 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~~l~~ 569 (705)
+...+...+++...+..+|..++.+.+..+++..+
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555544443
No 356
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=33.04 E-value=16 Score=43.98 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 344567877 466889999999874
No 357
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=32.74 E-value=22 Score=41.64 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|.||+.-|-+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 599999999999999999874
No 358
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=32.69 E-value=17 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.2
Q ss_pred HHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 123 VDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 123 V~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445567877 466899999999764
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=32.58 E-value=15 Score=33.57 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999765
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.49 E-value=11 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.3
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567999999999765
No 361
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=32.44 E-value=14 Score=35.12 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999764
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=32.31 E-value=12 Score=35.75 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566899999999887
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=32.09 E-value=12 Score=39.75 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=16.1
Q ss_pred HhhCCCCEEEEEeccCCCCccccc
Q psy11229 125 KVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 125 ~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+-.|.+.+| .|+||||||+++
T Consensus 171 ~i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEE--EESSSSCHHHHH
T ss_pred HHhcCCEEEE--ECCCCCCHHHHH
Confidence 3445766544 599999999886
No 364
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=32.04 E-value=12 Score=41.15 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=16.0
Q ss_pred hhCCCCEEEEEeccCCCCcccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm~ 149 (705)
++.|.+ ++..|+||||||.+..
T Consensus 125 ~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 125 GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHhcCC--cEEEeCCCCCHHHHHH
Confidence 344544 4668999999998863
No 365
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.80 E-value=15 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 366
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=31.77 E-value=27 Score=37.07 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.1
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|.-..|+-+|..|||||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 577778899999999999875
No 367
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=31.70 E-value=23 Score=41.59 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|.||+.-|-+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 599999999999999999764
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=31.62 E-value=13 Score=34.34 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.7
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 369
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=31.62 E-value=35 Score=34.99 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
..|...|.+|+|||+++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEEECSSCSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356667999999999873
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=31.60 E-value=12 Score=39.22 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=15.7
Q ss_pred hhCCCCEEEEEeccCCCCccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
+-.|.+. .-.|+||||||.++
T Consensus 168 i~~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCE--EEEESTTSCHHHHH
T ss_pred ccCCCEE--EEECCCCCCHHHHH
Confidence 3456654 45799999999876
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=31.59 E-value=14 Score=36.79 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcccc
Q psy11229 133 TIFAYGQTGTGKTFT 147 (705)
Q Consensus 133 tIfaYGqTgSGKT~T 147 (705)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999974
No 372
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=31.50 E-value=14 Score=37.69 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=15.3
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999876
No 373
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=31.37 E-value=21 Score=32.46 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=20.8
Q ss_pred hHHHHhhC-CCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLS-GFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~-G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++..++. .....|...|.+|+|||..+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 34455555 46678899999999999765
No 374
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=31.30 E-value=33 Score=37.51 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.5
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4678889999999999974
No 375
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=31.08 E-value=17 Score=39.30 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.8
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999874
No 376
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.04 E-value=2.3e+02 Score=23.47 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11229 546 RIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 546 ~~~~e~~~~~l~~e~~~~~~ 565 (705)
...|.+.+..+++|+..+++
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555533333
No 377
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.98 E-value=19 Score=37.75 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=23.3
Q ss_pred hhhHHHHhhCC-C--CEEEEEeccCCCCcccccc
Q psy11229 119 ARPIVDKVLSG-F--NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 119 ~~plV~~vl~G-~--N~tIfaYGqTgSGKT~Tm~ 149 (705)
+-+-++.++.| + ...+.-||.+|||||..+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 34668888864 3 4567889999999998653
No 378
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=30.92 E-value=14 Score=33.78 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999754
No 379
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.85 E-value=1e+02 Score=32.06 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.4
Q ss_pred Cceeec
Q psy11229 636 GEWELK 641 (705)
Q Consensus 636 ~~W~l~ 641 (705)
+.+.|.
T Consensus 88 GvY~I~ 93 (323)
T 1lwu_C 88 GLYYIK 93 (323)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 334443
No 380
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.54 E-value=15 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.1
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999864
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.51 E-value=14 Score=35.99 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.3
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 382
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.49 E-value=3.8e+02 Score=25.96 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy11229 507 LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY-SSLQEESEGLSKKLKKVS-SMLLAAKEERKDV 584 (705)
Q Consensus 507 ~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~-~~l~~e~~~~~~~l~~~~-~~l~~~~~e~~d~ 584 (705)
+++.....+..+..+..+.+.......++..++++.-.....+|..+ ..--.=+..|..||+.+. +-+..+++.-++.
T Consensus 130 ~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 130 ALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHH
Q psy11229 585 QRE 587 (705)
Q Consensus 585 ~~e 587 (705)
..+
T Consensus 210 ~~~ 212 (213)
T 1ik9_A 210 KQE 212 (213)
T ss_dssp HC-
T ss_pred hcc
No 383
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.43 E-value=24 Score=42.79 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.8
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
.+.|.||+.-|-+|||||.+
T Consensus 169 ~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 59999999999999999976
No 384
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=30.42 E-value=18 Score=42.54 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=17.5
Q ss_pred HhhCCCCEEEEEeccCCCCccccc
Q psy11229 125 KVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 125 ~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 333455456788999999999764
No 385
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.31 E-value=1.9e+02 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 532 EEELKKNIQEKDAERIDMEEKYSSLQEESE 561 (705)
Q Consensus 532 ~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~ 561 (705)
..+|+......+.+...|...+..|++|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444445555444444443
No 386
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.30 E-value=2.6e+02 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 551 EKYSSLQEESEGLSKKLKKVSSMLLAA 577 (705)
Q Consensus 551 ~~~~~l~~e~~~~~~~l~~~~~~l~~~ 577 (705)
..|...+.++..++.||..+..++.+.
T Consensus 75 ~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 75 STLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667766666666655555444
No 387
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.20 E-value=1.2e+02 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 538 NIQEKDAERIDMEEKYSSLQEESEG 562 (705)
Q Consensus 538 ~l~~~~~e~~~~e~~~~~l~~e~~~ 562 (705)
.+.+..+++..++.++.+|++|.+.
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666543
No 388
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.02 E-value=14 Score=35.73 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567999999999975
No 389
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=29.99 E-value=15 Score=38.11 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-.|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999987
No 390
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=29.94 E-value=25 Score=42.45 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
++.|.||+.-|-+|||||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 59999999999999999976
No 391
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=29.88 E-value=37 Score=36.99 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.5
Q ss_pred CEEEEEeccCCCCcccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm~ 149 (705)
...|+..|.+|||||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567777999999999873
No 392
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=29.73 E-value=18 Score=39.42 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcccc
Q psy11229 133 TIFAYGQTGTGKTFT 147 (705)
Q Consensus 133 tIfaYGqTgSGKT~T 147 (705)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467789999999987
No 393
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=29.59 E-value=27 Score=41.16 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.7
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
++.|.||+.-|-+|||||.+
T Consensus 153 ~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 58999999999999999976
No 394
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.45 E-value=1.6e+02 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
+.....+++-+..|.+|+..++
T Consensus 23 erdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHH
Confidence 3334455566666666654443
No 395
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=29.40 E-value=27 Score=41.01 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.3
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999864
No 396
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=29.22 E-value=24 Score=41.76 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=18.8
Q ss_pred CCCCEEEEEeccCCCCcccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~T 147 (705)
++.|.||+.-|-+|||||.+
T Consensus 166 ~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEeCCCCCCchhh
Confidence 58999999999999999976
No 397
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.20 E-value=3.1e+02 Score=24.50 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=3.9
Q ss_pred HHHHHhc
Q psy11229 610 QAIIQKF 616 (705)
Q Consensus 610 ~~ii~~f 616 (705)
...+|.|
T Consensus 136 ~E~MdSF 142 (167)
T 4gkw_A 136 AENMDSF 142 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3456666
No 398
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=29.10 E-value=2.5e+02 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 584 VQRENRKEIEGFLDNVRQITKEYS 607 (705)
Q Consensus 584 ~~~e~~~e~e~~~~~~~~~~~el~ 607 (705)
+.++...|...+...+..++.+|+
T Consensus 70 ~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 70 LKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666667776666654
No 399
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=29.07 E-value=15 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHhhcccccccCceeeccc
Q psy11229 622 LELMTQNATWNEDIGEWELKCV 643 (705)
Q Consensus 622 ~~ki~~~~~wdee~~~W~l~~~ 643 (705)
+.+--.++.|.|...=.+||.+
T Consensus 633 l~~rl~~gv~~e~~~L~qlp~v 654 (720)
T 2zj8_A 633 LRVRVKYGIREELIPLMQLPLV 654 (720)
T ss_dssp HHHHHHHTCCGGGGGGTTSTTC
T ss_pred HHHHHHcCCCccchhhhhCCCC
Confidence 3333456889888888888876
No 400
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.05 E-value=16 Score=33.91 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.4
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 401
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=29.05 E-value=20 Score=33.61 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.2
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 345567888999999999753
No 402
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=28.99 E-value=17 Score=33.63 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 403
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=28.88 E-value=15 Score=35.01 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=12.8
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999754
No 404
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.73 E-value=17 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 405
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=28.72 E-value=16 Score=36.74 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=17.2
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.|+.-.|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999754
No 406
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.71 E-value=5.9e+02 Score=27.55 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy11229 427 YQKEISELKKK 437 (705)
Q Consensus 427 ~~~ei~~Lk~~ 437 (705)
|-+.+..|-.+
T Consensus 55 YAk~L~kLakk 65 (486)
T 3haj_A 55 YAQQLTEWARR 65 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 407
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.63 E-value=19 Score=39.09 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.3
Q ss_pred hhCCCCEEEEEeccCCCCccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 455665 567899999999873
No 408
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=28.62 E-value=18 Score=33.90 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999753
No 409
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.57 E-value=6e+02 Score=27.58 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy11229 549 MEEKYSS 555 (705)
Q Consensus 549 ~e~~~~~ 555 (705)
.+..|..
T Consensus 105 ndn~~~e 111 (491)
T 1m1j_A 105 LDENYGH 111 (491)
T ss_dssp HHHHHHH
T ss_pred chhHHHH
Confidence 3334433
No 410
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=28.35 E-value=16 Score=40.86 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.0
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999999875
No 411
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=28.18 E-value=22 Score=43.27 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=17.7
Q ss_pred HHHHhhCCCCEEEEEeccCCCCccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTF 146 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~ 146 (705)
.+..++.|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3455677876 5778999999994
No 412
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.04 E-value=22 Score=36.57 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=23.6
Q ss_pred hhhHHHHhhCC-C--CEEEEEeccCCCCcccccc
Q psy11229 119 ARPIVDKVLSG-F--NGTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 119 ~~plV~~vl~G-~--N~tIfaYGqTgSGKT~Tm~ 149 (705)
+-+-++.++.| + ...+.-||.+|||||..+.
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 45678888864 3 4578899999999997653
No 413
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.87 E-value=15 Score=42.27 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 108 NSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 108 ~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3457666654 345665 577899999999764
No 414
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.64 E-value=2.1e+02 Score=31.14 Aligned_cols=6 Identities=0% Similarity=0.379 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy11229 598 NVRQIT 603 (705)
Q Consensus 598 ~~~~~~ 603 (705)
.+..++
T Consensus 84 ~~~~~~ 89 (455)
T 2dq0_A 84 RIGELE 89 (455)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 415
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=27.54 E-value=29 Score=37.04 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36777999999999865
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.45 E-value=18 Score=33.01 Aligned_cols=16 Identities=38% Similarity=0.492 Sum_probs=13.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3778999999999753
No 417
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=27.40 E-value=18 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.4
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|+-.|..|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999875
No 418
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=27.37 E-value=24 Score=36.66 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=22.4
Q ss_pred hHHHHHhhhhhHHHHhhCCC-CEEEEEeccCCCCccccc
Q psy11229 111 QLDIYNETARPIVDKVLSGF-NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 111 Q~~Vy~~~~~plV~~vl~G~-N~tIfaYGqTgSGKT~Tm 148 (705)
|++++.. +...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~----l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK----LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH----HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH----HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4555543 334444554 446888999999999875
No 419
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.31 E-value=3.4e+02 Score=29.11 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11229 589 RKEIEGFLDNVRQITKEYSYQQAIIQKFI 617 (705)
Q Consensus 589 ~~e~e~~~~~~~~~~~el~l~~~ii~~fi 617 (705)
..++.++.+.+.+++.++.-..+-|-|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 77 GEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33455556666666666655555555554
No 420
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.30 E-value=2.7e+02 Score=30.65 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNI 539 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l 539 (705)
..++++.+.+..++.+++
T Consensus 46 ~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444333333333333
No 421
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=27.28 E-value=18 Score=33.46 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.5
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
..+.-.|+.|||||..+-
T Consensus 34 e~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356678999999998763
No 422
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=27.21 E-value=17 Score=42.02 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=16.0
Q ss_pred hhCCCCEEEEEeccCCCCccccc
Q psy11229 126 VLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 126 vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.++|. .|+..|+||||||+.+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHA 172 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHHH
Confidence 35553 5788999999999843
No 423
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.18 E-value=2.4e+02 Score=31.09 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11229 591 EIEGFLDNVRQITKEYSYQQAIIQKF 616 (705)
Q Consensus 591 e~e~~~~~~~~~~~el~l~~~ii~~f 616 (705)
++.++.+.+.+++.++.-..+-|-|+
T Consensus 119 ~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 119 QVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444455555555555444445454
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=27.05 E-value=21 Score=32.89 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=9.7
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999753
No 425
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=26.99 E-value=31 Score=41.89 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.2
Q ss_pred CCCCEEEEEeccCCCCccccc
Q psy11229 128 SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 128 ~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+.|-||+.-|-+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 599999999999999999764
No 426
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=26.94 E-value=23 Score=37.05 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=13.8
Q ss_pred EEEEEeccCCCCcccc
Q psy11229 132 GTIFAYGQTGTGKTFT 147 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~T 147 (705)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688999999999974
No 427
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.93 E-value=20 Score=37.10 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=22.6
Q ss_pred hhhHHHHhhCC-C--CEEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLSG-F--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~G-~--N~tIfaYGqTgSGKT~Tm 148 (705)
+-+-++.++.| + ...+.-||.+|||||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 34667888864 2 346788999999999765
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=26.90 E-value=23 Score=37.21 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=22.6
Q ss_pred hhhHHHHhhCC---CCEEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLSG---FNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~G---~N~tIfaYGqTgSGKT~Tm 148 (705)
+.+-++.+|.| ....+.-+|++|||||..+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34667888865 2457888999999999764
No 429
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=26.74 E-value=17 Score=41.16 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=15.3
Q ss_pred EEEEEeccCCCCcccccc
Q psy11229 132 GTIFAYGQTGTGKTFTME 149 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm~ 149 (705)
..++..|.||||||+++.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457889999999999873
No 430
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=26.55 E-value=19 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666899999999765
No 431
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=26.47 E-value=18 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=13.1
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999875
No 432
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.47 E-value=73 Score=33.23 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHhcCChHHHHHHHhhcc
Q psy11229 610 QAIIQKFIPTKYLELMTQNAT 630 (705)
Q Consensus 610 ~~ii~~fiP~~~~~ki~~~~~ 630 (705)
.++++-|+|.+++++|+....
T Consensus 286 ~~~~~gWvp~~~~~~~~~~l~ 306 (357)
T 3rrk_A 286 GAALMGWVPQKAKGKVEEALG 306 (357)
T ss_dssp SEEEEEEECTTTHHHHHHTCC
T ss_pred EEEEEEEeeHHHHHHHHHHHH
Confidence 466788999999999987664
No 433
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.31 E-value=62 Score=32.43 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11229 563 LSKKLKKVSSMLLAAKEERKD 583 (705)
Q Consensus 563 ~~~~l~~~~~~l~~~~~e~~d 583 (705)
+...|+.+..++..+++|+..
T Consensus 73 L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443
No 434
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.15 E-value=3.9e+02 Score=24.57 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 580 ERKDVQRENRKEIEGFLDNVRQITKEYSY 608 (705)
Q Consensus 580 e~~d~~~e~~~e~e~~~~~~~~~~~el~l 608 (705)
.+..++..+..++..+++..+.+..++.-
T Consensus 74 qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 74 QVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777776666666665543
No 435
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=25.96 E-value=19 Score=33.27 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.4
Q ss_pred EEEeccCCCCcccc
Q psy11229 134 IFAYGQTGTGKTFT 147 (705)
Q Consensus 134 IfaYGqTgSGKT~T 147 (705)
|+-.|..|||||+.
T Consensus 5 I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 5 AVLVGLPGSGKSTI 18 (184)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999975
No 436
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.91 E-value=2.8e+02 Score=22.86 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 535 LKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 535 l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~ 565 (705)
|..+|+....+...|...+..++-+++.+.+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 437
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=25.87 E-value=20 Score=35.46 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556899999999765
No 438
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=25.86 E-value=20 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.4
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 439
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.84 E-value=3.9e+02 Score=25.73 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 548 DMEEKYSSLQEESE 561 (705)
Q Consensus 548 ~~e~~~~~l~~e~~ 561 (705)
.|.+.+..+++|+.
T Consensus 119 ~Lh~~ie~l~eEi~ 132 (209)
T 2wvr_A 119 KLHKEIEQKDNEIA 132 (209)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.44 E-value=20 Score=33.36 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 441
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=25.42 E-value=20 Score=35.03 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999866
No 442
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=25.35 E-value=29 Score=35.73 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=20.4
Q ss_pred hHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.+...+-.|..-.++-||+.|+|||.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 3444444566557888999999999765
No 443
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.30 E-value=20 Score=32.96 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcccc
Q psy11229 133 TIFAYGQTGTGKTFT 147 (705)
Q Consensus 133 tIfaYGqTgSGKT~T 147 (705)
.|+-.|..|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 367789999999975
No 444
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=25.26 E-value=33 Score=42.17 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 122 IVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 122 lV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
++.++-.|....++..|+||||||.+
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 34444457766788999999999965
No 445
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.25 E-value=25 Score=40.55 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=20.6
Q ss_pred CChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 109 SKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 109 ~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 33 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 33 PPQTEAVKKG-------LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp HHHHHHHHTT-------TTTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCCCcHHHHH
Confidence 3565655431 334544 677899999999875
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.16 E-value=22 Score=32.20 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999753
No 447
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=24.96 E-value=26 Score=42.87 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhc---CChHHHHHHHhhcccccccC
Q psy11229 603 TKEYSYQQAIIQKF---IPTKYLELMTQNATWNEDIG 636 (705)
Q Consensus 603 ~~el~l~~~ii~~f---iP~~~~~ki~~~~~wdee~~ 636 (705)
..||-+-.+|.+++ ..|+++.-+.....|.+-.+
T Consensus 949 ~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~ 985 (1108)
T 3l9o_A 949 GDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCK 985 (1108)
T ss_dssp TTHHHHHHHHHHHCCCSSCCTHHHHHTCC--------
T ss_pred ccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccC
Confidence 36788889999998 45788888888888877543
No 448
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=24.90 E-value=23 Score=34.61 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.8
Q ss_pred hCCCCEEEEEeccCCCCccccc
Q psy11229 127 LSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 127 l~G~N~tIfaYGqTgSGKT~Tm 148 (705)
++-+...|+-.|+||||||...
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHH
Confidence 3344567889999999999764
No 449
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.87 E-value=23 Score=37.31 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=22.0
Q ss_pred hhhHHHHhhC--CC--CEEEEEeccCCCCccccc
Q psy11229 119 ARPIVDKVLS--GF--NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 119 ~~plV~~vl~--G~--N~tIfaYGqTgSGKT~Tm 148 (705)
.-+-++.++. |+ ...+.-||.+|||||+.+
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 3456677776 33 346788999999999875
No 450
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.81 E-value=21 Score=33.74 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.6
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+-.|..|||||+..
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 451
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=24.79 E-value=23 Score=42.95 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcC---ChHHHHHHHhhccccccc
Q psy11229 604 KEYSYQQAIIQKFI---PTKYLELMTQNATWNEDI 635 (705)
Q Consensus 604 ~el~l~~~ii~~fi---P~~~~~ki~~~~~wdee~ 635 (705)
.||-+-.+|.+++. .|+++.-+.....|++-.
T Consensus 852 ~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~ 886 (1010)
T 2xgj_A 852 DELLLTELIFNGNFNELKPEQAAALLSCFAFQERC 886 (1010)
T ss_dssp CHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCC
T ss_pred cHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCC
Confidence 57888999999985 578999999999997743
No 452
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=24.73 E-value=22 Score=35.38 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46889999999999854
No 453
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.72 E-value=3.4e+02 Score=23.39 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy11229 489 MVEKLELLQK 498 (705)
Q Consensus 489 l~~k~~~l~~ 498 (705)
|++.+...|.
T Consensus 40 LQ~Ei~~~E~ 49 (107)
T 2k48_A 40 LQENITAHEQ 49 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 454
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=24.71 E-value=22 Score=33.57 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666789999999866
No 455
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.57 E-value=2.6e+02 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11229 522 AQELEHRKQKEEELKKNIQ 540 (705)
Q Consensus 522 ~~el~~~~~~~~~l~~~l~ 540 (705)
+.|++........++..|.
T Consensus 16 q~EI~rLnvlvgslR~KLi 34 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445554444455555443
No 456
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=24.54 E-value=3.7e+02 Score=24.45 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy11229 549 MEEKYSSLQEES 560 (705)
Q Consensus 549 ~e~~~~~l~~e~ 560 (705)
+-..|..+|.+.
T Consensus 45 li~eF~~~Q~~~ 56 (151)
T 2pih_A 45 IVNQIKALQKQA 56 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 457
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.49 E-value=2.9e+02 Score=22.51 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLL 575 (705)
Q Consensus 543 ~~e~~~~e~~~~~l~~e~~~~~~~l~~~~~~l~ 575 (705)
......++.+...|..|...|..++..+..++.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555544444433
No 458
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.46 E-value=24 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.2
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4567899999999765
No 459
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.25 E-value=24 Score=33.27 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.0
Q ss_pred EEEEEeccCCCCccccc
Q psy11229 132 GTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 132 ~tIfaYGqTgSGKT~Tm 148 (705)
-.|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999753
No 460
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.13 E-value=2.5e+02 Score=21.65 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 533 EELKKNIQEKDAERIDMEEKYSSLQEES 560 (705)
Q Consensus 533 ~~l~~~l~~~~~e~~~~e~~~~~l~~e~ 560 (705)
.+|+......+.+...|...+..|++|+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 461
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=24.07 E-value=20 Score=39.96 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=0.0
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
++..|.||||||..+
T Consensus 170 lLIaG~TGSGKSt~L 184 (512)
T 2ius_A 170 LLVAGTTGSGASVGV 184 (512)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 462
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.06 E-value=21 Score=39.07 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEeccCCCCcccc
Q psy11229 134 IFAYGQTGTGKTFT 147 (705)
Q Consensus 134 IfaYGqTgSGKT~T 147 (705)
|+-||++|+|||+.
T Consensus 53 iLl~GppGtGKT~l 66 (444)
T 1g41_A 53 ILMIGPTGVGKTEI 66 (444)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEcCCCCCHHHH
No 463
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=23.86 E-value=31 Score=42.26 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=0.0
Q ss_pred hhHHHHhhCCCCEEEEEeccCCCCcc
Q psy11229 120 RPIVDKVLSGFNGTIFAYGQTGTGKT 145 (705)
Q Consensus 120 ~plV~~vl~G~N~tIfaYGqTgSGKT 145 (705)
...+..++.|.| +++.++||||||
T Consensus 84 ~~ai~~il~g~d--vlv~ApTGSGKT 107 (1104)
T 4ddu_A 84 RLWAKRIVQGKS--FTMVAPTGVGKT 107 (1104)
T ss_dssp HHHHHHHTTTCC--EEECCSTTCCHH
T ss_pred HHHHHHHHcCCC--EEEEeCCCCcHH
No 464
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=23.80 E-value=30 Score=39.87 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
+-.++..|+||||||+.+
T Consensus 232 ~~~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKV 249 (666)
T ss_dssp CEEEEEECCTTSCTTTHH
T ss_pred CCeEEEEeCCchhHHHHH
No 465
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.77 E-value=19 Score=37.97 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+..|++-.|...|.+|+|||..+
T Consensus 30 k~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 30 KSVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHHCCEECEEECCCTTSCHHHHH
T ss_pred eeecCCCCEEEEEEcCCCCCHHHHH
No 466
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.71 E-value=23 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccc
Q psy11229 133 TIFAYGQTGTGKTF 146 (705)
Q Consensus 133 tIfaYGqTgSGKT~ 146 (705)
.|+-.|..|||||+
T Consensus 8 ~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 8 VVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 467
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.68 E-value=23 Score=35.84 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred hHHHHhhCCCCE--EEEEeccCCCCccccc
Q psy11229 121 PIVDKVLSGFNG--TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 121 plV~~vl~G~N~--tIfaYGqTgSGKT~Tm 148 (705)
+.++.+.-|+.. .+.-.|.+|+|||..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH
No 468
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=23.68 E-value=21 Score=34.47 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
|+-.|.+|||||+
T Consensus 10 I~l~G~~GsGKsT 22 (227)
T 1zd8_A 10 AVIMGAPGSGKGT 22 (227)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
No 469
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.57 E-value=23 Score=32.86 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccc
Q psy11229 133 TIFAYGQTGTGKTF 146 (705)
Q Consensus 133 tIfaYGqTgSGKT~ 146 (705)
.|+-.|..|||||+
T Consensus 11 ~I~l~G~~GsGKsT 24 (196)
T 2c95_A 11 IIFVVGGPGSGKGT 24 (196)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 470
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.56 E-value=7e+02 Score=26.66 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEE--------SEGLSKKLKKVSSMLLAAKEERKDVQR 586 (705)
Q Consensus 515 ~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e--------~~~~~~~l~~~~~~l~~~~~e~~d~~~ 586 (705)
+..|...+.-+...-...+.+..+++....+...+-..++....+ .+..+++.+++..++..++.-+.....
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy11229 587 ENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPT 619 (705)
Q Consensus 587 e~~~e~e~~~~~~~~~~~el~l~~~ii~~fiP~ 619 (705)
..+.-...+..+...+..--.....+..+..-+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~~ 138 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESHCQEP 138 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
No 471
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=23.53 E-value=28 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HhhhhhHHHHhhCCCCEEEEEeccCCCCccccc
Q psy11229 116 NETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 116 ~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+...+-..+-.| ..++-+|++|||||+++
T Consensus 47 ~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 47 EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHH
T ss_pred hhhHhhccccccCC--CEEEEEeCCCCCHHHHH
No 472
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=23.51 E-value=23 Score=36.86 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|...|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 473
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.44 E-value=2.4e+02 Score=21.17 Aligned_cols=55 Identities=36% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q psy11229 486 HQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK---------DAERIDMEEKYSSL 556 (705)
Q Consensus 486 ~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~---------~~e~~~~e~~~~~l 556 (705)
...|.++.++|+.++-.-|-. -.+++.+++-++|+..+++. +++...+++.+..|
T Consensus 4 vkaleekvkaleekvkalggg----------------grieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGG----------------GRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS----------------SSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhcCC----------------ccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 474
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=23.38 E-value=26 Score=36.96 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=0.0
Q ss_pred EEEEeccCCCCcc
Q psy11229 133 TIFAYGQTGTGKT 145 (705)
Q Consensus 133 tIfaYGqTgSGKT 145 (705)
.|+-.|+||||||
T Consensus 42 lIvI~GPTgsGKT 54 (339)
T 3a8t_A 42 LLVLMGATGTGKS 54 (339)
T ss_dssp EEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
No 475
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=23.34 E-value=33 Score=35.44 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHhh--------CCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVL--------SGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl--------~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++ -.-...|.-.|++|||||+++
T Consensus 75 ~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 75 AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp HHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH
T ss_pred HHhhcccccccCCCCCEEEEEECCCCchHHHHH
No 476
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.27 E-value=23 Score=33.95 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
|+-.|..|||||+
T Consensus 7 I~l~G~~GsGKsT 19 (220)
T 1aky_A 7 MVLIGPPGAGKGT 19 (220)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
No 477
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=23.27 E-value=30 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhHHHHhhCCCCEEEEEeccCCCCccc
Q psy11229 119 ARPIVDKVLSGFNGTIFAYGQTGTGKTF 146 (705)
Q Consensus 119 ~~plV~~vl~G~N~tIfaYGqTgSGKT~ 146 (705)
.+||-..........|+-.|..|||||+
T Consensus 1 ~~~~~~~~~~~~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 1 MQALTTYKCIEKGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp -------CCCSCCEEEEEECCTTSSHHH
T ss_pred CcccccccccCCCcEEEEEcCCCCCHHH
No 478
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.27 E-value=19 Score=41.80 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHhhCCCCEEEEEeccCCCCccccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..++.-.++.++..|..|||||+||
T Consensus 17 ~~av~~~~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 17 QEAVRTTEGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp HHHHHCCSSCEEEEECTTSCHHHHH
T ss_pred HHHHhCCCCCEEEEEcCCCCHHHHH
No 479
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=23.23 E-value=46 Score=34.02 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHh-----------------hCCCCEEEEEeccCCCCccccc
Q psy11229 112 LDIYNETARPIVDKV-----------------LSGFNGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 112 ~~Vy~~~~~plV~~v-----------------l~G~N~tIfaYGqTgSGKT~Tm 148 (705)
..+|..++..+--.+ -.+-...|.-.|++|||||+++
T Consensus 44 ~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 44 AEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH
No 480
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=23.13 E-value=24 Score=34.11 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
No 481
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=23.00 E-value=24 Score=32.52 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|+..|.+|+|||..+
T Consensus 50 ~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLL 65 (193)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=23.00 E-value=29 Score=36.47 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeccCCCCccc
Q psy11229 131 NGTIFAYGQTGTGKTF 146 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~ 146 (705)
...++-||++|+|||+
T Consensus 123 gsviLI~GpPGsGKTt 138 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTP 138 (331)
T ss_dssp SEEEEEECSCSSSHHH
T ss_pred CcEEEEEcCCCCCHHH
No 483
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.93 E-value=1.1e+02 Score=24.32 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE 558 (705)
Q Consensus 519 ~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~ 558 (705)
+.....+..+..+..+|+..+..+++++..+...+..++.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.78 E-value=24 Score=33.56 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
|+-.|..|||||+
T Consensus 3 I~l~G~~GsGKsT 15 (216)
T 3fb4_A 3 IVLMGLPGAGKGT 15 (216)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=22.72 E-value=22 Score=31.38 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred EEEeccCCCCccccc
Q psy11229 134 IFAYGQTGTGKTFTM 148 (705)
Q Consensus 134 IfaYGqTgSGKT~Tm 148 (705)
|+..|.+|+|||..+
T Consensus 6 i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 6 LVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 486
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=22.69 E-value=25 Score=33.28 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=0.0
Q ss_pred EEEEeccCCCCccccc
Q psy11229 133 TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 133 tIfaYGqTgSGKT~Tm 148 (705)
.|.-.|..|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 487
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.68 E-value=3.2e+02 Score=22.38 Aligned_cols=55 Identities=24% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 511 AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565 (705)
Q Consensus 511 ~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~~ 565 (705)
++..+..|...-++.++.-+..++++..+...+++...+.+.....+.-++.+++
T Consensus 22 AE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 22 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.66 E-value=23 Score=34.15 Aligned_cols=28 Identities=39% Similarity=0.574 Sum_probs=0.0
Q ss_pred hhhhHHHHhhCCC---CEEEEEeccCCCCcc
Q psy11229 118 TARPIVDKVLSGF---NGTIFAYGQTGTGKT 145 (705)
Q Consensus 118 ~~~plV~~vl~G~---N~tIfaYGqTgSGKT 145 (705)
++-|-+|.++.|- ...+.-+|.+|+|||
T Consensus 14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT 44 (251)
T 2zts_A 14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKT 44 (251)
T ss_dssp CSCTTTGGGTTTSEETTCEEEEECCTTSSHH
T ss_pred CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHH
No 489
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.52 E-value=5.6e+02 Score=26.88 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy11229 484 SDHQSMVEKLELLQKKVLVG----GENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK--DAERIDMEEKYSSLQ 557 (705)
Q Consensus 484 ~~~~~l~~k~~~l~~~~~~~----~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~--~~e~~~~e~~~~~l~ 557 (705)
..++.+.++++.|+..+... ......+.......|......+.+.++..+++....+-. .+-....++.+..++
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~ 82 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALL 82 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy11229 558 EESEGLSKKLKKVS 571 (705)
Q Consensus 558 ~e~~~~~~~l~~~~ 571 (705)
.+++.++.+|+.+.
T Consensus 83 ~~~~~le~~l~~lL 96 (354)
T 3d5a_X 83 ARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
No 490
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.48 E-value=3e+02 Score=21.95 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564 (705)
Q Consensus 508 ~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~~~~l~~e~~~~~ 564 (705)
...-..|..--+..++.+.+...+..+|+...+....+...|...+..|+.|+..+.
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 491
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.28 E-value=5.5e+02 Score=24.95 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11229 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK 552 (705)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~k~~~l~~~~~~~~~~~~~~~~~q~~~l~~~~~el~~~~~~~~~l~~~l~~~~~e~~~~e~~ 552 (705)
.....+.+........+.+.+..+- +.+..-...+++.......+.....+....+.......+.-...++..
T Consensus 76 ~~~~~~~e~~a~~h~~~a~~l~~~~-------~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~ 148 (276)
T 2v0o_A 76 DVFKTSTEKLANCHLDLVRKLQELI-------KEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAK 148 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q psy11229 553 YSSLQ---------EESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE-YSYQQAIIQKF 616 (705)
Q Consensus 553 ~~~l~---------~e~~~~~~~l~~~~~~l~~~~~e~~d~~~e~~~e~e~~~~~~~~~~~e-l~l~~~ii~~f 616 (705)
...+. .+++.+..++.+....|..........+..+..++....+.+..++.+ +.....++-.|
T Consensus 149 c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~ 222 (276)
T 2v0o_A 149 CVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSL 222 (276)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=22.23 E-value=28 Score=36.81 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=0.0
Q ss_pred CEEEEEeccCCCCccccc
Q psy11229 131 NGTIFAYGQTGTGKTFTM 148 (705)
Q Consensus 131 N~tIfaYGqTgSGKT~Tm 148 (705)
.+.++-+|++|||||.-+
T Consensus 23 ~g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLF 40 (365)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
No 493
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=22.18 E-value=26 Score=39.69 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred HhhhhhHHHHhhCCCCE-----------EEEEeccCCCCccccc
Q psy11229 116 NETARPIVDKVLSGFNG-----------TIFAYGQTGTGKTFTM 148 (705)
Q Consensus 116 ~~~~~plV~~vl~G~N~-----------tIfaYGqTgSGKT~Tm 148 (705)
+.+...++-.++.|..- .|+-+|++|+|||...
T Consensus 301 e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 301 WELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp HHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHH
No 494
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=22.06 E-value=33 Score=39.04 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred eCCCCChHHHHHhhhhhHHHHhhCCCCEEEEEeccCCCCcccc
Q psy11229 105 FDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFT 147 (705)
Q Consensus 105 f~~~~tQ~~Vy~~~~~plV~~vl~G~N~tIfaYGqTgSGKT~T 147 (705)
|.+-..|.++-..+...+-. ...+++-.+||||||..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~------~~~~~~~apTGtGKT~a 38 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQK------SYGVALESPTGSGKTIM 38 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHH------SSEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc------CCCEEEECCCCCCHHHH
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=22.06 E-value=26 Score=33.47 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=0.0
Q ss_pred EEEeccCCCCcc
Q psy11229 134 IFAYGQTGTGKT 145 (705)
Q Consensus 134 IfaYGqTgSGKT 145 (705)
++.+|.+|||||
T Consensus 2 ilV~Gg~~SGKS 13 (180)
T 1c9k_A 2 ILVTGGARSGKS 13 (180)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCcHH
No 496
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.06 E-value=25 Score=34.16 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
|+-.|..|||||+
T Consensus 19 I~l~G~~GsGKsT 31 (233)
T 1ak2_A 19 AVLLGPPGAGKGT 31 (233)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
No 497
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=21.95 E-value=28 Score=36.25 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=0.0
Q ss_pred EEEEeccCCCCcc
Q psy11229 133 TIFAYGQTGTGKT 145 (705)
Q Consensus 133 tIfaYGqTgSGKT 145 (705)
.|+-.|+||||||
T Consensus 12 ~i~i~GptgsGKt 24 (316)
T 3foz_A 12 AIFLMGPTASGKT 24 (316)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
No 498
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.87 E-value=26 Score=33.93 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
|+-.|++||||++
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
No 499
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.85 E-value=30 Score=32.53 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHhhCCCCEEEEEeccCCCCccc
Q psy11229 124 DKVLSGFNGTIFAYGQTGTGKTF 146 (705)
Q Consensus 124 ~~vl~G~N~tIfaYGqTgSGKT~ 146 (705)
..........|+-.|..|||||+
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGT 35 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHH
No 500
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=21.82 E-value=26 Score=34.40 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=0.0
Q ss_pred EEEeccCCCCccc
Q psy11229 134 IFAYGQTGTGKTF 146 (705)
Q Consensus 134 IfaYGqTgSGKT~ 146 (705)
||-.|++||||++
T Consensus 32 I~llGpPGsGKgT 44 (217)
T 3umf_A 32 IFVLGGPGSGKGT 44 (217)
T ss_dssp EEEECCTTCCHHH
T ss_pred EEEECCCCCCHHH
Done!