RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11229
(705 letters)
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 577 bits (1490), Expect = 0.0
Identities = 232/422 (54%), Positives = 291/422 (68%), Gaps = 61/422 (14%)
Query: 7 SEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFT 66
+ E+VRV VR RP++ KE A + + VD+ G ++VKNP G+AHE PKTFT
Sbjct: 12 ENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFT 71
Query: 67 FDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKV 126
FD V +D N+KQ ++Y+ET RP+VD V
Sbjct: 72 FDAV----------------------------------YDWNAKQFELYDETFRPLVDSV 97
Query: 127 LSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVS 186
L GFNGTIFAYGQTGTGKT+TMEG+ PE +G+IPNSF HIF HI++ ++ ++LVR S
Sbjct: 98 LQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRAS 156
Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
Y EIY EEIRDLLSK++ + LE+KERPD GVY VKDLS+++ + ++
Sbjct: 157 YLEIYQEEIRDLLSKDQTKRLELKERPDTGVY-------------VKDLSSFVTKSVKEI 203
Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
E +M++GN+NRSVGAT MNE SSRSHAIF I IE S + + + ++
Sbjct: 204 EHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECS-------------EVGLDGENHIR 250
Query: 307 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 366
+G+L+LVDLAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKL
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKL 310
Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 426
TR+LQDSLGGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL +
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370
Query: 427 YQ 428
+Q
Sbjct: 371 FQ 372
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 563 bits (1452), Expect = 0.0
Identities = 156/432 (36%), Positives = 216/432 (50%), Gaps = 72/432 (16%)
Query: 6 LSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTF 65
+S E ++++V R RPL+ E AG + +
Sbjct: 1 MSAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----------- 49
Query: 66 TFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDK 125
K + FD VF N+ Q +YNE A+ IV
Sbjct: 50 ------------------------------GKVYLFDKVFKPNASQEKVYNEAAKSIVTD 79
Query: 126 VLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRV 185
VL+G+NGTIFAYGQT +GKT TMEGV +GIIP IF HI + +++F ++V
Sbjct: 80 VLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKV 139
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
SY+EIY ++IRDLL +K L V E + YVK + ++ +D
Sbjct: 140 SYYEIYMDKIRDLLDVSKVN--------------LSVHEDKNRVPYVKGATERFVSSPED 185
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
+ +++ G NR + T MNE SSRSH++F I ++ +
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQ----------------KK 229
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL DG THIPYR+SK
Sbjct: 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSK 289
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDP-KDALL 424
LTRILQ+SLGGN++T + PAS+N ET STL + R K + N VN++ +
Sbjct: 290 LTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWK 349
Query: 425 IKYQKEISELKK 436
+Y+KE + +
Sbjct: 350 RRYEKEKEKNAR 361
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 558 bits (1440), Expect = 0.0
Identities = 165/427 (38%), Positives = 231/427 (54%), Gaps = 74/427 (17%)
Query: 12 TEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVT 71
+ +++V R RP ++ E ++G I T +
Sbjct: 2 SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV--------------------- 40
Query: 72 PYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN 131
+ E +FTFD VFD + KQ DI++ + +P VD +L+G+N
Sbjct: 41 -------------------DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYN 81
Query: 132 GTIFAYGQTGTGKTFTMEGVN-NVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEI 190
GT+FAYGQTG GK++TM G + + P+ +G+IP IF I + ++++ VRVSY EI
Sbjct: 82 GTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEI 141
Query: 191 YNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIM 250
Y E IRDLL+ D L V E + GVYVK L ++ ++ ++M
Sbjct: 142 YMERIRDLLAPQNDN--------------LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVM 187
Query: 251 SLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRL 310
G R+V AT MN+ SSRSH+IF I I + GS + G+L
Sbjct: 188 RRGGNARAVAATNMNQESSRSHSIFVITITQKN----------------VETGSAKSGQL 231
Query: 311 HLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRIL 370
LVDLAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKLTRIL
Sbjct: 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRIL 291
Query: 371 QDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKE 430
Q+SLGGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L ++
Sbjct: 292 QESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL---KQM 348
Query: 431 ISELKKK 437
+++ K +
Sbjct: 349 LAKAKTQ 355
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 555 bits (1432), Expect = 0.0
Identities = 181/409 (44%), Positives = 237/409 (57%), Gaps = 62/409 (15%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+N++V VR RPL+ +E+ ++I +D + + V P
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQA------------ 51
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
+ P+TFTFD V+D S I+ + +P++D VL GFN TIF
Sbjct: 52 -----------------KKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIF 94
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTG GKT+TM G E G IPNSF H+F I + + FLV SY E+YNEEI
Sbjct: 95 AYGQTGAGKTWTMGGN---KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
RDL+ N L +KE G+YV LS + A ++ +M G
Sbjct: 152 RDLIKNNTK---------------LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFA 196
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR V AT MN+ SSRSH+IF + IE S + + +++G+L+LVDL
Sbjct: 197 NRHVAATQMNDTSSRSHSIFMVRIECS-----EVIENKE---------VIRVGKLNLVDL 242
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G THIPYR+SKLTR+LQDSLG
Sbjct: 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLG 301
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 424
GNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA +
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 551 bits (1423), Expect = 0.0
Identities = 124/427 (29%), Positives = 187/427 (43%), Gaps = 73/427 (17%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
VRV VR+RP + A
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMD------------------------------- 49
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
+ + + N H+ + FD + S Q DIY + +PI+ +L G N ++
Sbjct: 50 ----SCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVL 103
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA---DESVKFLVRVSYFEIYN 192
AYG TG GKT TM G PE G+IP + + + V +SY EIY
Sbjct: 104 AYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQ 160
Query: 193 EEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSL 252
E++ DLL L ++E + + LS ++ D E+
Sbjct: 161 EKVLDLLDPASGD--------------LVIREDCRGNILIPGLSQKPISSFADFERHFLP 206
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
++NR+VGAT +N+ SSRSHA+ + ++ L + G+L+L
Sbjct: 207 ASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP---------------FRQREGKLYL 251
Query: 313 VDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQD 372
+DLAGSE +TG G RLKE+ IN SL LG V+ AL G +PYR+SKLTR+LQD
Sbjct: 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQD 310
Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEIS 432
SLGG++ +++ A + P Y +T+S L +A+R K++ N+ N+ + L +
Sbjct: 311 SLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQK 370
Query: 433 ELKKKLE 439
EL E
Sbjct: 371 ELLGPPE 377
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 543 bits (1402), Expect = 0.0
Identities = 153/416 (36%), Positives = 210/416 (50%), Gaps = 71/416 (17%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
V V VRVRPL+ +E G N +I +
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDG--------------------- 42
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
K+F FD VF N ++Y E A PI+D + G+NGTIF
Sbjct: 43 --------------------SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIF 82
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQT +GKT+TM G + G+IP + IF I K + +FL+RVSY EIYNE I
Sbjct: 83 AYGQTASGKTYTMMG---SEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETI 138
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLL + L ++E + VYV DL+ + ++ K ++ G K
Sbjct: 139 TDLLCGTQKM------------KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEK 186
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
+R G T MN+ SSRSH IF +I+E+ ++ N +GSV++ L+LVDL
Sbjct: 187 SRHYGETKMNQRSSRSHTIFRMILESR-----EKGEPSN------CEGSVKVSHLNLVDL 235
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSKLTRILQDSL 374
AGSER A+TGA+G RLKE IN SL LG VI L DG+ I YR+SKLTRILQ+SL
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKE 430
GGN+KT + T+ P +++ET++ L++AS K + N VN+ D L +
Sbjct: 296 GGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHHH 349
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 538 bits (1388), Expect = 0.0
Identities = 151/426 (35%), Positives = 209/426 (49%), Gaps = 83/426 (19%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+V+V VRVRP + +E I + T+ NP
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNPKQPK----------------- 44
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSK--------QLDIYNETARPIVDKVL 127
E PK+F+FD + +++ Q +Y + ++
Sbjct: 45 ------------------ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86
Query: 128 SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVS 186
G+N IFAYGQTG GK++TM G + +GIIP +F I ++++ + V VS
Sbjct: 87 EGYNVCIFAYGQTGAGKSYTMMG-KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVS 145
Query: 187 YFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDM 246
Y EIY E +RDLL+ L V+E P +G YV+DLS + +D+
Sbjct: 146 YMEIYCERVRDLLNPKNKG-------------NLRVREHPLLGPYVEDLSKLAVTSYNDI 192
Query: 247 EKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQ 306
+ +M GNK R+V AT MNE SSRSHA+F+II KR E + +
Sbjct: 193 QDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ------KRHDAET------NITTEK 240
Query: 307 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 355
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 356 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 415
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 416 NQDPKD 421
N
Sbjct: 361 NHHHHH 366
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 535 bits (1380), Expect = 0.0
Identities = 165/417 (39%), Positives = 225/417 (53%), Gaps = 71/417 (17%)
Query: 11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
+ E+ +N++V VR RP + E A I D + ++V+ + KT+TFD V
Sbjct: 3 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 62
Query: 71 TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
F A++KQ+D+Y PI+D+V+ G+
Sbjct: 63 ----------------------------------FGASTKQIDVYRSVVCPILDEVIMGY 88
Query: 131 NGTIFAYGQTGTGKTFTMEGVNNVPE--------LKGIIPNSFAHIFGHIAKADESVKFL 182
N TIFAYGQTGTGKTFTMEG + E L GIIP + IF + D +F
Sbjct: 89 NCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFS 146
Query: 183 VRVSYFEIYNEEIRDLLSKNKDQC--LEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIA 240
V+VS EIYNEE+ DLL+ + D L++ + P GV +K L
Sbjct: 147 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN-----------KRGVIIKGLEEITV 195
Query: 241 NNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAE 300
+N D++ +I+ G R+ AT MN SSRSH++FS+ I K TT +
Sbjct: 196 HNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM------KETTIDG------ 243
Query: 301 AQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIP 360
+ V++G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+P
Sbjct: 244 -EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVP 301
Query: 361 YRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
YR SKLTRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 302 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 535 bits (1381), Expect = 0.0
Identities = 146/427 (34%), Positives = 215/427 (50%), Gaps = 73/427 (17%)
Query: 1 MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHE 60
+S S + + +N++V+VRVRPL+ +E ++ V ++T
Sbjct: 8 ISGGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDS---- 63
Query: 61 PPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETAR 120
+ K FTFD F SKQ D+Y+
Sbjct: 64 ---------------------------------KLTKKFTFDRSFGPESKQCDVYSVVVS 90
Query: 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNV--------PELKGIIPNSFAHIFGHI 172
P++++VL+G+N T+FAYGQTGTGKT TM G GIIP + +H+F +
Sbjct: 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDEL 150
Query: 173 AKADESVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYV 232
+ V++ +R+SY E+YNEE+ DLLS + + + + V +
Sbjct: 151 RMME--VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDST-----------KKGSVII 197
Query: 233 KDLSAYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTG 292
+ L ++ DD+ K++ G + R T MN SSRSH +FSI++ +
Sbjct: 198 QGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI------RENGI 251
Query: 293 ENWRLWAEAQGSVQMGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISAL 351
E + +++G+L+LVDLAGSE +K G G R++E IN SL TLG VI+AL
Sbjct: 252 EG-------EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 352 VDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
VD + H+PYR SKLTR+LQ+SLGG +KT + AT+ P + EET+STL YA R K I N
Sbjct: 305 VD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQN 363
Query: 412 KARVNQD 418
K VNQ
Sbjct: 364 KPEVNQK 370
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 529 bits (1364), Expect = 0.0
Identities = 153/400 (38%), Positives = 204/400 (51%), Gaps = 76/400 (19%)
Query: 10 AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
A+ E N++V R RPL++ E + G IA + ++
Sbjct: 2 ADLAE-CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI------------------- 41
Query: 70 VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
K + FD VF +++ Q +YN+ A+ IV VL G
Sbjct: 42 -------------------------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEG 76
Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFE 189
+NGTIFAYGQT +GKT TMEG + PE GIIP IF +I DE+++F ++VSYFE
Sbjct: 77 YNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFE 136
Query: 190 IYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKI 249
IY ++IRDLL +K L V E + YVK + + D++
Sbjct: 137 IYLDKIRDLLDVSKTN--------------LSVHEDKNRVPYVKGCTERFVCSPDEVMDT 182
Query: 250 MSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGR 309
+ G NR V T MNE SSRSH+IF I ++ + G+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQEN----------------TQTEQKLSGK 226
Query: 310 LHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRI 369
L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+TRI
Sbjct: 227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRI 285
Query: 370 LQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
LQDSLGGN +T + P+SYN ET STL + R K I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 531 bits (1370), Expect = 0.0
Identities = 149/462 (32%), Positives = 222/462 (48%), Gaps = 81/462 (17%)
Query: 7 SEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFT 66
S + NVRV VRVR +E + I +D ++ P + +
Sbjct: 29 SSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADAR--- 85
Query: 67 FDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVF-------DANSKQLDIYNETA 119
K+FTFD F + + Q +Y+
Sbjct: 86 --------------------GARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLG 125
Query: 120 RPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADE-- 177
+D G++ IFAYGQTG+GK++TM G P+ G+IP + +F IA A +
Sbjct: 126 EEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDET 182
Query: 178 -SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLS 236
++ + V+VSYFE+YNE +RDLL+ L+V+E P G YVKDL+
Sbjct: 183 PNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY---------LKVRESPTEGPYVKDLT 233
Query: 237 AYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWR 296
+++ + M +G+ +R+V +T MN+ SSRSHA+F+I+++ E
Sbjct: 234 EVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQ------IHHDLET-- 285
Query: 297 LWAEAQGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC 356
+ + R+ LVDLAGSER T A+GQRL+E S IN SL+TLG VI+AL D K
Sbjct: 286 ----DDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341
Query: 357 T---------------------HIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEE 395
+ +PYR+S LT +L+DSLGGNSKT M A + P +Y+E
Sbjct: 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDE 399
Query: 396 TISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKK 437
T+STLRYA + K+I +A VNQ + + +I + +
Sbjct: 400 TLSTLRYADQAKRIRTRAVVNQVDGVSAAER-DAQIPSIVHR 440
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 524 bits (1352), Expect = 0.0
Identities = 139/402 (34%), Positives = 201/402 (50%), Gaps = 68/402 (16%)
Query: 11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
E VRV +RVRPL KE GH V+ G +T+
Sbjct: 6 PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRD---------------- 49
Query: 71 TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
+ F F V ++ Q +Y +P+++ GF
Sbjct: 50 --------------------------RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGF 83
Query: 131 NGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIAKADESVKFLVRVSY 187
N T+FAYGQTG+GKT+TM + + +GI+P + A F I + D + LV VSY
Sbjct: 84 NATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDL-LDCLVHVSY 142
Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
E+Y EE RDLL ++++E V + + D++
Sbjct: 143 LEVYKEEFRDLLE------------VGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
++ +GN R GAT +N +SSRSH +F++ +E + G + +
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAP--------GQLLV 242
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSK 365
+ H VDLAGSER KTG++G+RLKE+ +IN SL LGNVISAL D + +HIPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
+TRIL+DSLGGN+KTVM A V P+S +++ET++TL YASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 521 bits (1344), Expect = 0.0
Identities = 144/403 (35%), Positives = 207/403 (51%), Gaps = 52/403 (12%)
Query: 9 VAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFD 68
V E + +++V VRVRP + KE AG + V +++ I V +P
Sbjct: 3 VTEEDLCHHMKVVVRVRPENTKEKAAGFHKV--VHVVDKHILVFDP-------------- 46
Query: 69 TVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLS 128
V +G T F FD VFD S Q +++ T +PI+ L+
Sbjct: 47 ---KQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLN 103
Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
G+N T+ AYG TG GKT TM G + G++ + H++ + + E VSY
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGS---ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160
Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
E+YNE+IRDLL + L V+E GV V L+ + +++++
Sbjct: 161 EVYNEQIRDLLVNSGP---------------LAVREDTQKGVVVHGLTLHQPKSSEEILH 205
Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
++ GNKNR+ T MN SSRSHA+F I + A +V++
Sbjct: 206 LLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ-------------DKTASINQNVRIA 252
Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKL 366
++ L+DLAGSER + +GA G R E + IN SL LGNVI+AL D K HIPYRNSKL
Sbjct: 253 KMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312
Query: 367 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
TR+L+DSLGGN +T+M A V P+S Y++T +TL+YA+R K I
Sbjct: 313 TRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 520 bits (1342), Expect = 0.0
Identities = 130/408 (31%), Positives = 183/408 (44%), Gaps = 58/408 (14%)
Query: 2 SQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEP 61
+ + V FVRV+P + I +
Sbjct: 9 HHSSGLVPRGSGTRKKVHAFVRVKPTDDFAHEMIRYGDD-----KRSIDIHLKKDIRRGV 63
Query: 62 PKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP 121
+ +F D V ++ Q +Y A+
Sbjct: 64 VNN----------------------------QQTDWSFKLDGVLH-DASQDLVYETVAKD 94
Query: 122 IVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKF 181
+V + L G+NGTI YGQTG GKT+TM G + +GI+P + +F I +
Sbjct: 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTH-AI 153
Query: 182 LVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIAN 241
VRVSY EIYNE + DLLS V + + E P GV++K LS ++ +
Sbjct: 154 TVRVSYLEIYNESLFDLLSTLPYVGPSVTP--------MTIVENPQ-GVFIKGLSVHLTS 204
Query: 242 NADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEA 301
+D ++ G NR + + MN+ SSRSH IF+I +E S RT E
Sbjct: 205 QEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS-----RTLSE-------- 251
Query: 302 QGSVQMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPY 361
+++LVDLAGSER K+G+ GQ LKEA+ IN SLS L I AL D K HIP+
Sbjct: 252 -EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPF 310
Query: 362 RNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
R KLT L+DSLGGN V+ + + EET+S+LR+ASR+K +
Sbjct: 311 RQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 518 bits (1336), Expect = 0.0
Identities = 109/413 (26%), Positives = 162/413 (39%), Gaps = 90/413 (21%)
Query: 11 ETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTV 70
E ++ VR+ VR P + + +G + +
Sbjct: 17 EGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQ---------------- 60
Query: 71 TPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGF 130
F FD F A Q ++Y P+VDK+L GF
Sbjct: 61 --------------------------NEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 131 NGTIFAYGQTGTGKTFTMEGVNN---VPELKGIIPNSFAHIFGHIAKADES--VKFLVRV 185
T AYGQTGTGK+++M +PE GI+P + IF + E+ V
Sbjct: 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYA 154
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
S+ EIYNE+ DLL P + + + ++ D
Sbjct: 155 SFIEIYNEKPFDLLGSTP--------------------HMPMVAARCQRCTCLPLHSQAD 194
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
+ I+ LG +NR V T MN SSRSHAI +I +++
Sbjct: 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------------------T 232
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 365
R+++VDLAGSE +TG G +E INL L ++ V+ ++ G T IPYR+S
Sbjct: 233 HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSV 291
Query: 366 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 418
LT +LQ SL S A + P + ET+STLR+ + K + +
Sbjct: 292 LTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHHHH 344
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 517 bits (1333), Expect = e-180
Identities = 136/425 (32%), Positives = 208/425 (48%), Gaps = 73/425 (17%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+RV+ R+RPL +KE A +
Sbjct: 5 GKIRVYCRLRPLCEKEIIAKERNAIRSV-------------------------------- 32
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
TV++ + K +D VFD N+ Q D++ +T + +V + G+N IF
Sbjct: 33 -----DEFTVEHLWKD--DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF 84
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTG+GKTFT+ G G+ P + + +F + K F ++ E+Y + +
Sbjct: 85 AYGQTGSGKTFTIYGA---DSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTL 141
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLL + + L+ L++K+ V V++++ + ++++ I+ G++
Sbjct: 142 VDLLLPKQAKRLK-----------LDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSE 190
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
R T MNE SSRSH I S+IIE N ++ G+L VDL
Sbjct: 191 QRHTTGTLMNEQSSRSHLIVSVIIE-----------STN-----LQTQAIARGKLSFVDL 234
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSER K+G++G +LKEA IN SLS LG+VISAL G HIPYRN KLT ++ DSLG
Sbjct: 235 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLG 293
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELK 435
GN+KT+M + PA N +ET ++L YASRV+ I N N K+ + + +K +S K
Sbjct: 294 GNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWK 351
Query: 436 KKLEE 440
++
Sbjct: 352 EQAGR 356
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 515 bits (1330), Expect = e-180
Identities = 155/409 (37%), Positives = 206/409 (50%), Gaps = 72/409 (17%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
V+V VR+RP++++E+D + VD I+ N
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNT---------------------- 39
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVF--------DANSKQLDIYNETARPIVDKVLS 128
G A PK F +D F + + Q ++ I+
Sbjct: 40 ---------NLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFD 90
Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSY 187
G+N IFAYGQTG+GK++TM G + G+IP + +F K +E F V VSY
Sbjct: 91 GYNACIFAYGQTGSGKSYTMMG---TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSY 147
Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
EIYNE++RDLL + L+V+E +G YV LS + D+E
Sbjct: 148 MEIYNEKVRDLLDPKGSR------------QTLKVREHSVLGPYVDGLSKLAVTSYKDIE 195
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
+MS GNK+R+V AT MNE SSRSHA+F I + + ++
Sbjct: 196 SLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT------------LYDVKSGTSGEKV 243
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYR 362
G+L LVDLAGSER KTGA+G RLKE S IN SL+TLG VISAL D K +PYR
Sbjct: 244 GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYR 303
Query: 363 NSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
+S LT +L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K +
Sbjct: 304 DSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 509 bits (1314), Expect = e-177
Identities = 118/423 (27%), Positives = 181/423 (42%), Gaps = 70/423 (16%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
++V VR RPLS+ E DI TV N + + P VD
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPR------------------YKVD 42
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVL-SGFNGTIFA 136
+ I F D VFD +Y T +P++ + +G + FA
Sbjct: 43 MTKYI------------ERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90
Query: 137 YGQTGTGKTFTMEGVNNV--PELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
YGQTG+GKT+TM G + GI + IF + D+ + +S++EIY +
Sbjct: 91 YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
+ DLL K K + E V VKDL +++ M G
Sbjct: 151 LYDLLQKRKM---------------VAALENGKKEVVVKDLKILRVLTKEELILKMIDGV 195
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
R +G + N+ SSRSHAI +I ++ + + +G++ +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLK-------------------DINKNTSLGKIAFID 236
Query: 315 LAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
LAGSER A T + ++ + + + IN SL L I A+ K HIP+R+S+LT++L+D
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDI 295
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISE 433
G SK++M A + P E+T++TLRY+SRVK N + + LL
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGH 355
Query: 434 LKK 436
Sbjct: 356 HHH 358
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 504 bits (1300), Expect = e-176
Identities = 130/402 (32%), Positives = 190/402 (47%), Gaps = 63/402 (15%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RV+ R+RP K ++ I +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNE--------------------------------F 31
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
D +G+ +++ F FD +FD +D++ E +V L G+N IFA
Sbjct: 32 DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFA 90
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
YGQTG+GKTFTM GIIP++ +HIF I K + + V + EIYNE I
Sbjct: 91 YGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENI 145
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDMEKIMSLGN 254
DLL + + + E++ + + ++++ + + +E I+ N
Sbjct: 146 VDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKAN 200
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K RS +TA NE SS SH+IF I + G N G+ G L+LVD
Sbjct: 201 KLRSTASTASNEHSSASHSIFIIHLS-----------GSN-----AKTGAHSYGTLNLVD 244
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQD 372
LAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +LQ
Sbjct: 245 LAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQY 304
Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
SL G+SKT+M + P+S + ET+++LR+AS+V +R
Sbjct: 305 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 502 bits (1295), Expect = e-175
Identities = 124/402 (30%), Positives = 181/402 (45%), Gaps = 62/402 (15%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RV+ RVRP E +
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHIL---------------------------------IEKF 32
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+ G ++ F FD +F+ + +I+ E R +V L G+N IFA
Sbjct: 33 NEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFA 91
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEEI 195
YGQTG+GKT+TM G+IP + +HIF A + + + Y EIYNE I
Sbjct: 92 YGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETI 146
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVK-ERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
DLL K + +++ + G Y+ +++ + ++ I+ +
Sbjct: 147 LDLLRDFKSH---DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKAS 203
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K RS AT NE SSRSH++F + I G N G G+L+LVD
Sbjct: 204 KMRSTAATRSNERSSRSHSVFMVHIN-----------GRN-----LHTGETSQGKLNLVD 247
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSKLTRILQD 372
LAGSER + +G+RL+E IN SLS LG+VI AL D +IP+RNSKLT +LQ
Sbjct: 248 LAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQY 307
Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
SL G+SKT+M + P + ET+++LR+AS+V R
Sbjct: 308 SLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAKR 349
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 500 bits (1290), Expect = e-173
Identities = 129/414 (31%), Positives = 190/414 (45%), Gaps = 74/414 (17%)
Query: 10 AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
+ E + V VR RPL+K+E +D+ +V ++ V P
Sbjct: 65 TDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPK-------------- 109
Query: 70 VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
VDL + + + F FD FD + +Y TARP+V + G
Sbjct: 110 ----LKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEG 153
Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNV---PELKGIIPNSFAHIFGHIAKA-DESVKFLVRV 185
T FAYGQTG+GKT TM G + KGI + +F + ++ V V
Sbjct: 154 GKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYV 213
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
++FEIYN ++ DLL+K L V E V V L Y+ ADD
Sbjct: 214 TFFEIYNGKVFDLLNKKAK---------------LRVLEDSRQQVQVVGLQEYLVTCADD 258
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
+ K++++G+ R+ G T N SSRSHA F I++
Sbjct: 259 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLR---------------------TKGR 297
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R S
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 356
Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 417
KLT++L+DS +G NS+T M A + P + E T++TLRYA RVK++ + +
Sbjct: 357 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHHH 410
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 495 bits (1276), Expect = e-172
Identities = 136/394 (34%), Positives = 195/394 (49%), Gaps = 71/394 (18%)
Query: 17 NVRVFVRVRPLSKKESDAGH-VDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
N+RV RVRP++K++ + + T D + I G
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKG------------------- 45
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
P +F D VF + Q D++ E + +V + GFN IF
Sbjct: 46 -------------------KPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIF 85
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEI 195
AYGQTG GKT+TMEG E GI + +F + + ++ + VS EIYNE +
Sbjct: 86 AYGQTGAGKTYTMEGT---AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVL 142
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
RDLL K + LE++ PD +YV L+ + + DD+ K+ G+
Sbjct: 143 RDLLGKEPQEKLEIRLCPD-----------GSGQLYVPGLTEFQVQSVDDINKVFEFGHT 191
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR+ T +NE SSRSHA+ + + G + + G G+L+LVDL
Sbjct: 192 NRTTEFTNLNEHSSRSHALLIVTVR-----------GVD-----CSTGLRTTGKLNLVDL 235
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
AGSER K+GA G RL+EA IN SLS LG+VI+AL + H+P+RNSKLT +LQDSL
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLS 294
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
G+SKT+M V P N ET+ +L++A RV+ +
Sbjct: 295 GDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 496 bits (1279), Expect = e-172
Identities = 130/410 (31%), Positives = 190/410 (46%), Gaps = 74/410 (18%)
Query: 10 AETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDT 69
+ E + V VR RPL+K+E +D+ ++ ++ V P
Sbjct: 45 TDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPK-------------- 89
Query: 70 VTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSG 129
VDL + + + F FD FD + +Y TARP+V + G
Sbjct: 90 ----LKVDL------------TKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEG 133
Query: 130 FNGTIFAYGQTGTGKTFTMEGVNNVP---ELKGIIPNSFAHIFGHIAKA-DESVKFLVRV 185
T FAYGQTG+GKT TM G + KGI + +F + + V V
Sbjct: 134 GKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYV 193
Query: 186 SYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADD 245
++FEIYN ++ DLL+K L V E V V L ++ N+ADD
Sbjct: 194 TFFEIYNGKLFDLLNKKAK---------------LRVLEDGKQQVQVVGLQEHLVNSADD 238
Query: 246 MEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSV 305
+ K++ +G+ R+ G T N SSRSHA F II+
Sbjct: 239 VIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR---------------------AKGR 277
Query: 306 QMGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNS 364
G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R S
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 336
Query: 365 KLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 413
KLT++L+DS +G NS+T M AT+ P + E T++TLRYA RVK++ +
Sbjct: 337 KLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 495 bits (1277), Expect = e-172
Identities = 130/400 (32%), Positives = 192/400 (48%), Gaps = 55/400 (13%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF RVRP+ E + G + +
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERR------------ 70
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
A P F+FD VF S Q +++ E A +V L G+ IFA
Sbjct: 71 --------GTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFA 121
Query: 137 YGQTGTGKTFTMEGVNNV-PELKGIIPNSFAHIFGHIAK-ADESVKFLVRVSYFEIYNEE 194
YGQTG+GKTFTMEG P+L+G+IP + H+F + + + + SY EIYNE
Sbjct: 122 YGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNET 181
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPD--IGVYVKDLSAYIANNADDMEKIMSL 252
+RDLL+ + + E++ + V + + +++ ++ L
Sbjct: 182 VRDLLATGTRKGQGGE---------CEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHL 232
Query: 253 GNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHL 312
+NR+V TA NE SSRSH++F + I GE+ ++G L L
Sbjct: 233 ARQNRAVARTAQNERSSRSHSVFQLQIS-----------GEH-----SSRGLQCGAPLSL 276
Query: 313 VDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 368
VDLAGSER A G +RL+E IN SLSTLG VI AL + + +H+PYRNSKLT
Sbjct: 277 VDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKLTY 335
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 408
+LQ+SLGG++K +M + P N E++++LR+AS+V +
Sbjct: 336 LLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 494 bits (1274), Expect = e-171
Identities = 131/402 (32%), Positives = 192/402 (47%), Gaps = 63/402 (15%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RV++R+RP K ++ I +
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNE--------------------------------F 87
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
D +G+ +++ F FD +FD +D++ E +V L G+N IFA
Sbjct: 88 DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFA 146
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
YGQTG+GKTFTM GIIP++ +HIF I K + + V + EIYNE I
Sbjct: 147 YGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENI 201
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDI-GVYVKDLSAYIANNADDMEKIMSLGN 254
DLL + + + E++ + + ++++ + + +E I+ N
Sbjct: 202 VDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKAN 256
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
K RS +TA NE SSRSH+IF I + G N G+ G L+LVD
Sbjct: 257 KLRSTASTASNEHSSRSHSIFIIHLS-----------GSN-----AKTGAHSYGTLNLVD 300
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQD 372
LAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +LQ
Sbjct: 301 LAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQY 360
Query: 373 SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 414
SL G+SKT+M + P+S + ET+++LR+AS+V +R
Sbjct: 361 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 489 bits (1262), Expect = e-169
Identities = 122/427 (28%), Positives = 195/427 (45%), Gaps = 75/427 (17%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+N+RVF R+RP + E + +
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTW----------------------------------TY 84
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
D + + + + F+FD VF S Q DI+ + P++ L G+N IF
Sbjct: 85 HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIF 143
Query: 136 AYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEE 194
AYGQTG+GKT+TM+GV PE G+IP + +F I + ++ ++ ++ EIYNE
Sbjct: 144 AYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEV 200
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
+ DLLS + + + + +YV +++ + + + +M
Sbjct: 201 LYDLLSNEQKDME------------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 248
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
NR+ +TA NE SSRSHA+ + + G + + + +G ++LVD
Sbjct: 249 MNRATASTAGNERSSRSHAVTKLELI-----------GRH-----AEKQEISVGSINLVD 292
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
LAGSE + R+ E IN SLS L NVI AL+ + HIPYRNSKLT +L SL
Sbjct: 293 LAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSL 347
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKI-CNKARVNQDPKDALLIKYQKEISE 433
GGNSKT+M V P ++E++ +LR+A+ V KA+ N+ +++ S
Sbjct: 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVA--NSSTQSN 405
Query: 434 LKKKLEE 440
++
Sbjct: 406 NSGSFDK 412
Score = 33.0 bits (76), Expect = 0.34
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEE 559
+ A + E+ H +Q+ EEL + +++ AE +E+ E
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46
Score = 28.8 bits (65), Expect = 7.8
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 543 DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK---EIEGFLDNV 599
+ + + L++ +E L + ++ ++ L KE+ E ++ + DN+
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61
Query: 600 R 600
R
Sbjct: 62 R 62
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 182 bits (465), Expect = 3e-55
Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 334 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 393
A IN SLS LGNVISAL +G TH+PYR+SK+TRILQDSL GN +T + P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 394 EETISTLRYASRVKKICNKARVNQD-PKDALLIKYQKEI 431
ET STL + R K I N VN + + KY+KE
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 182 bits (464), Expect = 7e-55
Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 338 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 397
N SLS LGNVISAL +G TH+PYR+SK+TRILQDSLGGN +T + P+ +N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 398 STLRYASRVKKICNKARVNQD-PKDALLIKYQKEISELKKKLEE 440
STL + R K I N VN + + KY+KE + K
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSV 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.4 bits (200), Expect = 6e-16
Identities = 105/694 (15%), Positives = 201/694 (28%), Gaps = 214/694 (30%)
Query: 11 ETEEIEN-----VRVFVRVRPLSKKESDAGHVDIATVDLLNGIIT---VKNPAGSAHEPP 62
ET E + + VF D V D+ I++ + + S
Sbjct: 10 ETGEHQYQYKDILSVF---EDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVS 62
Query: 63 KT-FTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTF---TFDTVFDANSKQLDIYNET 118
T F T+ L V+ F T S +Y E
Sbjct: 63 GTLRLFWTL-------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 119 ARPI--VDKVLSGFN--------------------GTIFAYGQTGTGKT-FTMEGVNNVP 155
+ ++V + +N + G G+GKT ++ +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173
Query: 156 ELKGIIPNSFAHIF----GHIAKADESVKFLVRVSYFEIYNEEIRDLLSKN-KDQCLEVK 210
+ IF + + ++ L ++ Y N R S N K + ++
Sbjct: 174 --YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 211 ERPDIGVYCLEVKERPDIGVYVKDL-------SAYIANNADDME-KIMSLGNKNRSVGAT 262
L +K +P Y L +A NA ++ KI+ L + + V
Sbjct: 232 AELRR----L-LKSKP----YENCLLVLLNVQNAKAW-NAFNLSCKIL-LTTRFKQV--- 277
Query: 263 AMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAGSERQA 322
+ +S+ + S + S L T E L +
Sbjct: 278 -TDFLSAATTTHIS-LDHHSMTL----TPDEVKSLLLKY--------------------- 310
Query: 323 KTGASGQRL-KEASKIN-LSLSTLGNVISALV-DGKCTHIPYRN---SKLTRILQDSLGG 376
Q L +E N LS +I+ + DG T +++ KLT I++ SL
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSL-- 363
Query: 377 NSKTVMCATVGPASY--NYEE-------------TISTLRYASR-------VKKICNKAR 414
+ PA Y ++ +S + + V K+ +
Sbjct: 364 -------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 415 VNQDPKD------ALLIKYQKEISELK---KKLEEASVPPPREEPTPNPEPELDETEPCV 465
V + PK+ ++ ++ + ++ + + + P+
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK----------------TF 459
Query: 466 EPSEVIEDETDA--------ELKRA-QSDHQSMVEKLEL----LQKKVLVGGENLLEKAE 512
+ ++I D LK + ++ + L L++K+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572
I L + K I + D KY L + L K+
Sbjct: 520 ILNTLQQL------------KFYKPYICDND-------PKYERLVNA---ILDFLPKIEE 557
Query: 573 MLLAAKEERKD-VQRENRKEIEG-FLDNVRQITK 604
L+ +K D ++ E E F + +Q+ +
Sbjct: 558 NLICSKY--TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 60.3 bits (145), Expect = 2e-09
Identities = 89/596 (14%), Positives = 183/596 (30%), Gaps = 163/596 (27%)
Query: 151 VNNVPE-LKGIIPNS-FAHIFGHIAKADESVKFL---VRVSYFEIYNEEIRDLLSKN--- 202
+V + K I+ HI A L + E+ + + ++L N
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 203 -----KDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
K + + + + + D V+ K N ++ + L R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY-------NVSRLQPYLKL----R 141
Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEA--QGSVQM---GRLHL 312
A+ E+ R ++I+ G+ G +G+ W + + VQ ++
Sbjct: 142 ----QALLEL--RPAKN--VLID---GVLG---SGKTW-VALDVCLSYKVQCKMDFKIFW 186
Query: 313 VDLAGSERQAK-------------TGASGQRLKEASKINLSLSTLGNVISALVDGKCTHI 359
++L + + R +S I L + ++ + L+ K
Sbjct: 187 LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 360 PYRNSKLTRILQD--------SLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 411
PY N L +L + + + K ++ T R+ +
Sbjct: 242 PYENCLL--VLLNVQNAKAWNAFNLSCKILL----------------TTRFKQVTDFLSA 283
Query: 412 KARVN---QDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPS 468
+ L K + L K L+ P++ P E+ T P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSL--LLKYLDC----RPQDLP-----REVLTTNPRR--L 330
Query: 469 EVIEDETDAELKRAQSDH-----QSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQ 523
+I AE R +KL + + L N+LE AE ++ +
Sbjct: 331 SII-----AESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDRLSV- 380
Query: 524 ELEHRKQKEEELKK--NIQEKDAERI--DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKE 579
+I I D+ + + + KL K S L K+
Sbjct: 381 -----------FPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYS---LVEKQ 420
Query: 580 ERKDVQRENRKEIEG-FLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEW 638
+E+ I +L+ ++ EY+ ++I+ + K + + D +
Sbjct: 421 -----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-LD-QYF 473
Query: 639 ELKCVAYTGNNMRKIVPLPEDTTATQIAQPDFSHLYRYYPSEKVKNSGSGQGGGRS 694
++ G++++ I T + DF L +K+++ + S
Sbjct: 474 ----YSHIGHHLKNIEHPERMTLFRMVFL-DFRFL-----EQKIRHDSTAWNASGS 519
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 57.0 bits (138), Expect = 2e-08
Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 10/160 (6%)
Query: 466 EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
+ ++ + +++ + V L+ V + A+ + + L A+ +
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 526 EHRKQ-------KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
E K+ K +L++ I E++ E + EK ++L+ ++KL+ L ++
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 579 EERKDVQRENR---KEIEGFLDNVRQITKEYSYQQAIIQK 615
EE K+ +EI + Q E + K
Sbjct: 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 53.6 bits (129), Expect = 2e-07
Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 23/177 (12%)
Query: 425 IKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
I + +I +L++K++E E + E+ +L+
Sbjct: 924 IGLENKIMQLQRKIDEQ-------------NKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 485 DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
+ E+ + +V +L E+ ++ L E +K EE K E +
Sbjct: 971 RLRMSEEEAKNATNRV----LSLQEEIAKLRKELHQTQTE---KKTIEEWADKYKHETEQ 1023
Query: 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQ 601
+++E+ + L+ E E L++++ E + E K++E L++ R
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIH---DQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 49.0 bits (117), Expect = 5e-06
Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 471 IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQ 530
IE + K+ ++ + +L Q+K+ + E L + E E +
Sbjct: 911 IEARSVERYKKLHIGLENKIMQL---QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 531 KEEELKKNIQEK---DAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
E L+ + +E + ++E+ + L++E + K + K E + + E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 588 NRKEIE 593
+++
Sbjct: 1028 LKEQNT 1033
Score = 38.9 bits (91), Expect = 0.006
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 21/164 (12%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAA-QELEH 527
++ L R + K ++QK V L + + L Q
Sbjct: 843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHV----RGWLARVHYHRTLKAIVYLQCCYR 898
Query: 528 RKQKEEELKK-NIQEKDAER-----IDMEEKYSSLQ----EESEGLSKKLKKVSSMLLAA 577
R + ELKK I+ + ER I +E K LQ E+++ L+K++++ +
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
Query: 578 KEERKDVQ------RENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
E + ++ R + +E + + V + +E + + + +
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-08
Identities = 62/407 (15%), Positives = 125/407 (30%), Gaps = 118/407 (28%)
Query: 57 SAHEPPKTFTFDTVTPYSTVDLLN---GIITV---KNPAGSAHEPPKTF--TFDTVF--- 105
EP + F D P + +L+ G ++ + G + F+ +
Sbjct: 40 ILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 106 -DANS--KQLDIYNETARPIVDKVLSGF---------------NGTIFAYGQTGTGKTFT 147
D ++ +L N+T +++ + N +F G +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 148 M---EGVNN--VPELKGI--IPNSFAHIFGHIAKADESVKFLVR--VSYFEIYNEEIRDL 198
+ +G + EL+ + + I + E++ L+R + +++ + + ++
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGL-NI 215
Query: 199 LS--KNKDQCLEVKERPD------IGVYCLEVKERPDIGVYVKDLSAYIAN------NAD 244
L +N PD I + C P IGV L+ Y+
Sbjct: 216 LEWLENPSN------TPDKDYLLSIPISC------PLIGVI--QLAHYVVTAKLLGFTPG 261
Query: 245 DMEKIMS--LGNKNRSVGATAMNEVSSRS----------HAIFSIIIETSSGLGGKRTTG 292
++ + G+ V A A+ E S +F I G+
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI------GVRCYEAYP 315
Query: 293 ENWRLWAEA-QGSVQMGR------LHLVDLAGSERQAKTGASGQRLKEASKINLSL---- 341
N L + S++ L + +L + Q + L ++ +SL
Sbjct: 316 -NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 342 ---------STLGNVISALVDGKC------THIPYRNSKL---TRIL 370
+L + L K + IP+ KL R L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 47.0 bits (111), Expect = 2e-05
Identities = 46/300 (15%), Positives = 87/300 (29%), Gaps = 95/300 (31%)
Query: 432 SELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIE------DETDAELKRAQSD 485
S+L+++ +P P E D+ EP+ E + ++ ++
Sbjct: 31 SQLQEQFN-KILPEPTE------GFAADD-----EPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 486 HQSMVEKLELLQKKVLVGGE-NLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
++L L E LE +I A A +L K +
Sbjct: 79 QFD-----QVL-NLCLTEFENCYLEGNDIH-----ALAAKLLQENDTTLVKTKEL----- 122
Query: 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK---------EIEGF 595
++ ++ KK +S L A V N + + +
Sbjct: 123 ----IKNYITARIMAKRPFD---KKSNSALFRA------VGEGNAQLVAIFGGQGNTDDY 169
Query: 596 LDNVRQITKEYSYQQAIIQKFIPT--KYL-ELMTQNATWNE------DIGEW-------- 638
+ +R + + Y ++ I + L EL+ + +I EW
Sbjct: 170 FEELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 639 ---ELKCVAYTGNNMRKIVPLPEDTTATQIAQ-PDFSHLYRYYPSEKVKN----SGSGQG 690
L + + PL Q+A + L + P E +G QG
Sbjct: 227 DKDYLLSIPIS-------CPL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Score = 42.3 bits (99), Expect = 6e-04
Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 63/227 (27%)
Query: 83 ITVKNPAGSA-HEPPK----------TFTFDTVFDANSKQLDIYNETARPIVDKVLSGFN 131
I + NP H + F+T+ D K I+ E
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 132 GTIFAYGQTGTGKT----FTME-GVNNVPELKGIIPNS--FAHIFGH--------IAKAD 176
G + A T T ME + KG+IP FA GH + AD
Sbjct: 1724 GLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIPADATFA---GHSLGEYAALASLAD 1775
Query: 177 ----ESVKFLVR---------VSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVK 223
ES+ +V V E+ +++ N + + + V
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG-MIAINPGRVAASFSQEALQYVVERVG 1834
Query: 224 ERPDIGVYVKDLSAYIAN-NADDMEKIMSLGNKNRSVGATAMNEVSS 269
+R G V I N N ++ + + + G+ A++ V++
Sbjct: 1835 KR--TGWLV-----EIVNYNVENQQYVAA-GDLR------ALDTVTN 1867
Score = 41.2 bits (96), Expect = 0.001
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 28/124 (22%)
Query: 557 QEESEGLSKKLKKVSSMLLAAKE--ERKDVQRENRKEIEGF--LDNVRQITKEYSYQ--- 609
QE+ G+ L K S AA++ R D + K+ GF LD V +
Sbjct: 1627 QEQ--GMGMDLYKTSK---AAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 610 ---QAIIQKFIPTKYLELMTQNATWNEDI-GEWELKCVAYTGNNMRKIVPLPEDT-TATQ 664
+ I + + + E + E I E +YT + + +ATQ
Sbjct: 1679 EKGKRIRENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRS-------EKGLLSATQ 1730
Query: 665 IAQP 668
QP
Sbjct: 1731 FTQP 1734
Score = 38.5 bits (89), Expect = 0.008
Identities = 78/468 (16%), Positives = 134/468 (28%), Gaps = 194/468 (41%)
Query: 4 KELSEVAETEEIENVRVFV-----RVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSA 58
+EL ++ +T V + + L + DA V +++L + +NP+ +
Sbjct: 171 EELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL---ENPSNT- 225
Query: 59 HEPPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNET 118
P K + ++ P S L G+I QL Y T
Sbjct: 226 --PDKDY-LLSI-PISCP--LIGVI---------------------------QLAHYVVT 252
Query: 119 ARPIVDKVLSGFN-GTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD- 176
A+ L GF G + +Y + TG + +G++ A IA+ D
Sbjct: 253 AK------LLGFTPGELRSYLKGATGHS------------QGLVT---AVA---IAETDS 288
Query: 177 -----ESVKFLVRVSYF------EIYNEEIRDLLSKNKDQCLEVKERPDIGV--YCLEVK 223
SV+ + V +F E Y L + LE E GV L +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPN--TSLPPSILEDSLENNE----GVPSPMLSIS 342
Query: 224 --ERPDIGVYVKDLSA--------YIA--NNADDM------EKIMSLGNKNRSVGATAMN 265
+ + YV ++ I+ N A ++ + + L R A +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 266 E------------VSSR---------SH-------AIFSIIIETSSGLGGKR-------- 289
+ S+R SH I +++ + K
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 290 TTGENWRL-------------------WAEAQGSVQMGRLHLVDLAGSERQAKTGASGQR 330
G + R+ W Q H++D G G
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETT---TQFKATHILDF---------GPGG-- 508
Query: 331 LKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNS 378
S LG + DG + I+ +L N
Sbjct: 509 ----------ASGLGVLTHRNKDGTGVRV---------IVAGTLDINP 537
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 55.2 bits (133), Expect = 6e-08
Identities = 34/194 (17%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
Query: 426 KYQKEISELKKKLEE-ASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
K Q+++ +L+++LEE + + + ++ + E + E ++ E K +
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 485 DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
+ L ++K +NL + + ++ L+ ++ +EL+K ++ +
Sbjct: 1012 RVSDLTTNLAEEEEKA----KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR---KEIEGFLDNVRQ 601
E D+ E+ + LQ + L +L K L AA +D + K+I ++
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 602 ITKEYSYQQAIIQK 615
+ ++ ++A K
Sbjct: 1128 LQEDLESEKAARNK 1141
Score = 50.2 bits (120), Expect = 2e-06
Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 18/181 (9%)
Query: 426 KYQKEISELKKKLEEASVPPPREEPTPN--------PEPELDETEPCVEPSEVIEDETDA 477
K KE L++++ + + EE E + E E ++ E E +
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLL----EKAEIQQQLLDAAAQELEHRKQKEE 533
++ + + + E++ LQ ++ L E +L D +Q+ K+ E
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 534 ------ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
+L+++++ + A R E++ L EE E L +L+ +E R ++
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 588 N 588
+
Sbjct: 1181 D 1181
Score = 47.5 bits (113), Expect = 2e-05
Identities = 16/141 (11%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELK 536
A+ + K + L++ + + + E +++ E + +Q+ +L+
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEIL----HEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 537 KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK---EIE 593
+ ++E++A R ++ + + + + + + + +ERK ++ +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 594 GFLDNVRQITKEYSYQQAIIQ 614
+ + +TK + +++I
Sbjct: 1022 EEEEKAKNLTKLKNKHESMIS 1042
Score = 46.0 bits (109), Expect = 5e-05
Identities = 21/180 (11%), Positives = 74/180 (41%), Gaps = 17/180 (9%)
Query: 425 IKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS 484
+ ++ + E++ ++EE E + ++ + ++ + +L+
Sbjct: 923 QELEEILHEMEARIEE----------------EEERSQQLQAEKKKMQQQML-DLEEQLE 965
Query: 485 DHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDA 544
+ ++ +KL+L + + + + I + + +E + +++ +L N+ E++
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 545 ERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604
+ ++ + + + L +LKK ++ ++ ++ E+ E + QI +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Score = 43.3 bits (102), Expect = 3e-04
Identities = 27/162 (16%), Positives = 67/162 (41%), Gaps = 19/162 (11%)
Query: 426 KYQKEISELKKKLEEASVPPPREE---PTPNPEPELDETEPCVEPSEVIEDETDAELKRA 482
K++ ISEL+ +L++ R+E E E + + + E A+L +
Sbjct: 1036 KHESMISELEVRLKKEEKS--RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 483 QSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK 542
+ + Q+ + +LE + N L+K + + ++LE K + +K
Sbjct: 1094 EEELQAALARLEDETSQK----NNALKKIRELESHISDLQEDLESEKAARNKAEK----- 1144
Query: 543 DAERIDMEEKYSSLQ---EESEGLSKKLKKVSSMLLAAKEER 581
++ D+ E+ +L+ E++ + +++ +++
Sbjct: 1145 --QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 41.7 bits (98), Expect = 8e-04
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK----DAERIDMEEKYSSLQEES 560
+ L++ + +QQ +A +ELE + + E K +QEK + EE L +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 561 EGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
+ L + L ++ + + +E + +Q E +K
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKK 952
Score = 34.0 bits (78), Expect = 0.20
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 481 RAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQ 540
R + + Q+ E+L+ +++ E L++ E + L L+ + Q E EL +
Sbjct: 854 RQEEEMQAKDEELQRTKER-QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
E +++ L+E + ++++ + E+K +Q++
Sbjct: 913 EMRVRLAAKKQE---LEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 49.4 bits (117), Expect = 7e-07
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 519 DAAAQELEH-RKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
D QE E RK +EE+ +K +QE DA + +E+++ K L++ +
Sbjct: 78 DRLTQEPESIRKWREEQ-RKRLQELDAAS---KVMEQEWREKAK---KDLEEWNQRQSEQ 130
Query: 578 KEERKDVQRENRKEIEGFLDN 598
E+ K NR + F
Sbjct: 131 VEKNK---INNRIADKAFYQQ 148
Score = 37.1 bits (85), Expect = 0.009
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 23/87 (26%)
Query: 477 AELKRAQSDHQSMV----EKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELE-----H 527
A+ R + +S+ E+ + LQ+ ++Q+ + A ++LE
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQEL----DA---ASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 528 RKQKEEELKKN-------IQEKDAERI 547
+Q E+ N Q+ DA+ I
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDADII 154
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 44.9 bits (105), Expect = 8e-05
Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)
Query: 417 QDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETD 476
L + Q E+ + ++LEE E E E+ + V + + D
Sbjct: 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQK--LEDEIRAKQEEVSRIQQEVELKD 432
Query: 477 AELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELK 536
+E +R Q + + K + +L + + D E
Sbjct: 433 SETRRLQEEVEDARRKQDEAAAALL---AATTPQHHHVAERADTDPDHDNASDAGSESGG 489
Query: 537 KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKD-----VQRENRKE 591
++ + +D +L E +E L +LK + L + +E K+ + REN ++
Sbjct: 490 GDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQ 549
Query: 592 IEGFLDNVRQITK 604
+R+I K
Sbjct: 550 GRDKYKTLREIRK 562
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 43.2 bits (101), Expect = 2e-04
Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 421 DALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELK 480
D + + I E +K L++A + + + E + ++
Sbjct: 17 DKEIDSLEPLIREKRKDLDKA-------------LNDKEAKNKAILNLEEEKLALKLQVS 63
Query: 481 RAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQ 540
+ + Q K+ +QKK + + + +++L + E + K++ + + I+
Sbjct: 64 KNEQTLQDTNAKIASIQKK--------MSEIKSEREL-RSLNIEEDIAKERSNQANREIE 114
Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVR 600
E EK L++E L K ++ S++ + K+ Q+ K+ E ++
Sbjct: 115 NLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE 174
Query: 601 Q 601
Sbjct: 175 P 175
Score = 32.8 bits (74), Expect = 0.33
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 5/110 (4%)
Query: 532 EEELKK--NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589
LK+ I D E +E +++ + + + +L +EE+ ++ +
Sbjct: 4 NTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ-V 62
Query: 590 KEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWE 639
+ E L + + + I+ + L + E +
Sbjct: 63 SKNEQTLQDTNAKIASIQKKMSEIKS--ERELRSLNIEEDIAKERSNQAN 110
Score = 28.5 bits (63), Expect = 6.8
Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 513 IQQQLLDAAAQELEH-RKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVS 571
I+ LD LE ++K ++ + + ++ + +L+EE L ++ K
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKD----LDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66
Query: 572 SMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATW 631
L + + + + +R + E + + + L +
Sbjct: 67 QTLQDTNAKIASI--QKKMSEIKSERELRSLNIEEDIAKERSNQAN-REIENLQNEIKRK 123
Query: 632 NEDIGEWE 639
+E + +
Sbjct: 124 SEKQEDLK 131
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 43.0 bits (100), Expect = 3e-04
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 9/224 (4%)
Query: 401 RYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDE 460
R A V + V+ + L + +K+ + K+ +EAS P +E
Sbjct: 362 REAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEE 421
Query: 461 TEPCVEPSEVIEDETDAELKRAQSDHQSMVEK-------LELLQKKVLVGGENLLEKAEI 513
+ + +L+ + + K L+ K + +L+ +
Sbjct: 422 VKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQT 481
Query: 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573
+ E + + K + + ME+K S QE + L++K++
Sbjct: 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541
Query: 574 LLAAKEERKD--VQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
LL +E +Q + + EGF R + E Q +++
Sbjct: 542 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
Score = 29.5 bits (65), Expect = 4.1
Identities = 22/143 (15%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Query: 407 KKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVE 466
++I +++ +++ + ++E +K++E V + + E
Sbjct: 458 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQ---------ASAKMLHE 508
Query: 467 PSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKA--EIQQQLLDAAAQE 524
E + + + Q + + EK+E + ++L E L E +Q L + +E
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568
Query: 525 LEHRKQKEEELKKNIQEKDAERI 547
K + ++L+ ++ + A I
Sbjct: 569 SRIMKNEIQDLQTKMRRRKACTI 591
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 42.3 bits (99), Expect = 3e-04
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 455 EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQ 514
E +L E + E ++ +E +L +SD + E+ EL + K L E+ +
Sbjct: 145 EIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC----AELEEEIKTV 200
Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
L + + E QKE++ ++ I+ + + E + + L K + + L
Sbjct: 201 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
Query: 575 LAAKEERKDVQRENRKEIE 593
A K + K + E +
Sbjct: 261 YAQKLKYKAISEELDHALN 279
Score = 38.5 bits (89), Expect = 0.005
Identities = 32/170 (18%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 428 QKEISELKKKLEEASVP-PPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDH 486
+ I +++L+ A + E DE+E ++ E + + +++ +
Sbjct: 89 NRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 148
Query: 487 QSMVEKLELLQKKV------LVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQ 540
+ E +K LV E+ LE+AE + +L + ELE ++ + + N++
Sbjct: 149 KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE---EEIKTVTNNLK 205
Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
+A+ +K +EE + LS KLK+ + A+ +++
Sbjct: 206 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Score = 37.7 bits (87), Expect = 0.008
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Query: 428 QKEISELKKKLEEA-SVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDH 486
+K++ LK E A E E + E + + T+ EL +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 487 QSMVEKLELLQK---KVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKD 543
+ EKLEL +K +L + ++ ++ LD A + L QK EE +K E +
Sbjct: 65 KDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESE 124
Query: 544 AERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
+E + +E+ E +LK+ + A + ++V R+
Sbjct: 125 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI 171
Score = 36.2 bits (83), Expect = 0.024
Identities = 16/87 (18%), Positives = 34/87 (39%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564
EN L++A+ + AA + + + L+K ++ + E E QE+ E
Sbjct: 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75
Query: 565 KKLKKVSSMLLAAKEERKDVQRENRKE 591
KK + + + + + E +
Sbjct: 76 KKATDAEADVASLNRRIQLFEEELDRA 102
Score = 36.2 bits (83), Expect = 0.032
Identities = 25/179 (13%), Positives = 70/179 (39%), Gaps = 24/179 (13%)
Query: 426 KYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSD 485
+ + E+ L+KKL+ E ELD+ ++ ++ + + + A++D
Sbjct: 38 QLEDELVSLQKKLKAT-------------EDELDKYSEALKDAQEKLELAEKKATDAEAD 84
Query: 486 HQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAE 545
S+ +++L + E+ + Q+ L A Q+LE ++ +E ++ ++ ++
Sbjct: 85 VASLNRRIQLFE-----------EELDRAQERLATALQKLEEAEKAADESERGMKVIESR 133
Query: 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITK 604
EEK + + + + + ++ + + E + + +
Sbjct: 134 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192
Score = 33.5 bits (76), Expect = 0.18
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
+DA ++++ K +E E +A++ E++ L++E L KKLK L
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 578 KEERKDVQRENRKEIE 593
E KD Q + +
Sbjct: 61 SEALKDAQEKLELAEK 76
Score = 28.8 bits (64), Expect = 6.1
Identities = 14/90 (15%), Positives = 39/90 (43%)
Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
++ + + E+ + +E + + + + +E++ SLQ++ + +L K S L
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 575 LAAKEERKDVQRENRKEIEGFLDNVRQITK 604
A+E+ + +++ R+I
Sbjct: 65 KDAQEKLELAEKKATDAEADVASLNRRIQL 94
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 41.2 bits (96), Expect = 4e-04
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 444 PPPREEPTPNPEPELDETEPCVE----PSEVIEDETDAEL 479
++ P L+ C E P +++E ++ ++
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV 43
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 42.6 bits (99), Expect = 5e-04
Identities = 28/236 (11%), Positives = 85/236 (36%), Gaps = 18/236 (7%)
Query: 405 RVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPC 464
+ ++ + R D LL + + ++L+ K +E P E E
Sbjct: 445 ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTV 504
Query: 465 VEPSEVIEDETDAELKRAQSDHQSMVEKL----ELLQKKVLVGGENLLEKAEIQQQLLDA 520
++ + + D ++K H+ + L L + + +L +
Sbjct: 505 LDKAV----QADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560
Query: 521 AAQELEH---RK-QKEEELKKNIQEKDAERIDMEEKYSSLQEES---EGLSKKLKKVSSM 573
L+ + E +LK + ++ + + + EE+ L + +++
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTK 620
Query: 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIP--TKYLELMTQ 627
+ + ++++ + + + + F ++Q E + ++ +++ ++EL+
Sbjct: 621 VQESLKKQEGLLKNIQVSHQEFS-KMKQSNNEANLREEVLKNLATAYDNFVELVAN 675
Score = 34.5 bits (78), Expect = 0.14
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 49/208 (23%)
Query: 403 ASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEE--ASVPPPREEPTPNPEPELDE 460
+ + + +KA ++ I L K E A++P T ++
Sbjct: 498 GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNV 557
Query: 461 TEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEI------- 513
+ + + ++ E + +S + M K + V E L E+
Sbjct: 558 LKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGL 617
Query: 514 ----------QQQLLDA-----------------------AAQELEHRKQKEEELKKNIQ 540
Q+ LL + L EL N++
Sbjct: 618 TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLK 677
Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLK 568
E + Y+ L E K
Sbjct: 678 EG-------TKFYNELTEILVRFQNKCS 698
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 39.7 bits (92), Expect = 0.001
Identities = 22/144 (15%), Positives = 56/144 (38%), Gaps = 7/144 (4%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK 531
E +T L+++ ++ + +LE L ++ L E+ I + ++ +
Sbjct: 25 ESDTAVRLRKSHTEMSKSISQLESLNRE-------LQERNRILENSKSQTDKDYYQLQAI 77
Query: 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKE 591
E +++ D++ + +SLQEE + L L+KV A++ ++E
Sbjct: 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137
Query: 592 IEGFLDNVRQITKEYSYQQAIIQK 615
++ + + + +
Sbjct: 138 EIDLNYKLKSLQQRLEQEVNEHKV 161
Score = 31.2 bits (70), Expect = 0.65
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 424 LIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQ 483
L + QK++ E L + E + E + E + +
Sbjct: 8 LSQLQKQLEEANDLLRT------ESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILE 61
Query: 484 SDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK-EEELKK---NI 539
+ + LQ LE + +L+ R +EE+K N+
Sbjct: 62 NSKSQTDKDYYQLQAI--------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113
Query: 540 QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
++ + ER + ++ + ++E L L L E+ + + + +
Sbjct: 114 EKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167
Score = 30.1 bits (67), Expect = 1.5
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 491 EKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDME 550
EKL LQK++ E LL + ++ E+ K+I + ++ +++
Sbjct: 6 EKLSQLQKQL-----------EEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ 54
Query: 551 EKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
E+ L+ K ++ ++L + ER+D ++ +
Sbjct: 55 ERNRILENSKSQTDKDYYQLQAIL---EAERRDRGHDSEMIGD 94
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 39.2 bits (91), Expect = 0.001
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 455 EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQ 514
+ L+ E E SE E + ELK ++ +S+ + E +K + E+ ++
Sbjct: 27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKE----DKYEEEIKVL 82
Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
L A E ++ +L+K+I + + E + KY ++ EE + L K++++ S
Sbjct: 83 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN 142
Query: 575 LAAKEERKDVQR 586
+ E +++
Sbjct: 143 YHLENEVARLKK 154
Score = 27.6 bits (61), Expect = 8.6
Identities = 12/83 (14%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
+++ E + + L + LE+ + ++ ++ + E K + L+EE + ++ L
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKK---LLERAEERAELSEGKSAELEEELKTVTNNL 58
Query: 568 KKVSSMLLAAKEERKDVQRENRK 590
K + + ++ + E +
Sbjct: 59 KSLEAQAEKYSQKEDKYEEEIKV 81
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 37.9 bits (88), Expect = 0.002
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 517 LLDAAAQELEHRKQKEE--ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
LL +A +E E KEE LK+ +++ +A R ++EEK SL +E L +++
Sbjct: 5 LLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-N 63
Query: 575 LAAKEERKDVQRENRKEIEGFLDNVRQ 601
LA EER D +N+ ++E + + +
Sbjct: 64 LADAEERCDQLIKNKIQLEAKVKEMNK 90
Score = 36.4 bits (84), Expect = 0.007
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKD----------AERIDMEEKYS 554
+ + E +L +A + RK+ EE++ +QEK+ D EE+
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 555 SLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
L + L K+K+++ L +E ++ + RK
Sbjct: 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK 108
Score = 32.2 bits (73), Expect = 0.23
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 474 ETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLL----EKAEIQQQLLDAAAQELEHRK 529
E + E+ + + + E LE + + E ++ EK ++Q Q+ A L +
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV-QAEQDNLADAE 68
Query: 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589
++ ++L KN + +A+ +M ++ +E + L+ K +K+ K + D++
Sbjct: 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128
Query: 590 K 590
K
Sbjct: 129 K 129
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/192 (9%), Positives = 54/192 (28%), Gaps = 6/192 (3%)
Query: 401 RYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDE 460
+ S ++ I N + LIK + ++ E E E
Sbjct: 821 QEVSELEAIYNSLQ-----TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALR 875
Query: 461 TEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDA 520
E + + + + + + + + + ++ +
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 521 AAQELEHRKQKEEELKKNIQEKDAERIDM-EEKYSSLQEESEGLSKKLKKVSSMLLAAKE 579
+ E + L + + ++ E K + ++ G+ + + LLA E
Sbjct: 936 QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 995
Query: 580 ERKDVQRENRKE 591
+ ++ +
Sbjct: 996 RLQKIEDLHHHH 1007
Score = 28.9 bits (65), Expect = 8.1
Identities = 15/138 (10%), Positives = 39/138 (28%), Gaps = 12/138 (8%)
Query: 405 RVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPC 464
K K V + +L K + + L + + +L E
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNE----TGDSITAVQAKLKNLEAF 931
Query: 465 VEPSEVIEDETDAELKRAQSD--------HQSMVEKLELLQKKVLVGGENLLEKAEIQQQ 516
+ +E +++++L + + E+ + + G ++ E +
Sbjct: 932 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLL 991
Query: 517 LLDAAAQELEHRKQKEEE 534
Q++E
Sbjct: 992 AELERLQKIEDLHHHHHH 1009
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 39.3 bits (90), Expect = 0.005
Identities = 21/159 (13%), Positives = 51/159 (32%)
Query: 457 ELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQ 516
E+ + + + + E + S + EK E K + G + + + +
Sbjct: 54 EITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFR 113
Query: 517 LLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576
LL A +E R + + + + E+ L ++ +K
Sbjct: 114 LLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQN 173
Query: 577 AKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
A ++ D+ E + + ++ K A++
Sbjct: 174 ADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDA 212
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 38.1 bits (88), Expect = 0.007
Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 483 QSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQL---LDAAAQELEHRKQKEEELKKNI 539
Q D + +E + ++ V + +K+ QL +QEL+ ++ E + I
Sbjct: 3 QQDQVVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETI 62
Query: 540 ---------QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
QEK ++ + ++E + + +++ S + E R ++++ R
Sbjct: 63 KIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRA 122
Query: 591 EIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEW 638
+ + +++ + + I +YL +TQ I EW
Sbjct: 123 QASDNREIDKRMNS--LKPDLMQLRKIRDQYLVWLTQKGARQRKINEW 168
Score = 32.7 bits (74), Expect = 0.33
Identities = 12/99 (12%), Positives = 39/99 (39%)
Query: 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572
+ QQ +E + + + Q+K E + E+Y+ +E + ++ +
Sbjct: 1 MSQQDQVVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNE 60
Query: 573 MLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611
+ +E+ + ++ +++ +E F + + +
Sbjct: 61 TIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNS 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 36.6 bits (85), Expect = 0.011
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTF 146
DT + + + T R V + G G GKT
Sbjct: 5 WNANLDT-YHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic
vesicle, protein transport, transport, vacuole; 2.80A
{Saccharomyces cerevisiae}
Length = 152
Score = 35.6 bits (81), Expect = 0.019
Identities = 20/99 (20%), Positives = 38/99 (38%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK 531
+ D ++R + EL Q G N++ + L +EL+ ++Q+
Sbjct: 24 DSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQE 83
Query: 532 EEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKV 570
LK+ I K+ + S E+ L +KL +
Sbjct: 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.9 bits (84), Expect = 0.024
Identities = 24/200 (12%), Positives = 59/200 (29%), Gaps = 4/200 (2%)
Query: 430 EISELKKKLEEASVP----PPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSD 485
++ L + EE +VP E + E +E + E E++ + A +
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 486 HQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAE 545
+ E + + + + + + + E + + KE E K + E
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132
Query: 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605
E + +E + K +K +++ + E N +
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192
Query: 606 YSYQQAIIQKFIPTKYLELM 625
++ + +
Sbjct: 193 SRRTGHLVNEKASKEAKVQA 212
Score = 35.3 bits (80), Expect = 0.077
Identities = 17/123 (13%), Positives = 39/123 (31%)
Query: 439 EEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQK 498
+ + E T PE TE SE +E D + + + + + +
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71
Query: 499 KVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQE 558
+ + AA E + + E + K + + + + ++ +
Sbjct: 72 SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131
Query: 559 ESE 561
ES+
Sbjct: 132 ESK 134
Score = 30.7 bits (68), Expect = 2.1
Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 7/169 (4%)
Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPE---LDETEPCVEPSEVIEDETDAELKRAQS 484
E S +L E E E ++ E + E + A + A +
Sbjct: 26 VPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATT 85
Query: 485 DHQSMVEKLELLQKKVLVGGENLLE----KAEIQQQLLDAAAQELEHRKQKEEELKKNIQ 540
+ + +K V E K++ + + A + + K E K +
Sbjct: 86 ETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKE 145
Query: 541 EKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589
+ + E+ + + + LK R V +R
Sbjct: 146 VQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASR 194
>4hb1_A DHP1; designed helical bundle; 2.90A {Synthetic construct} SCOP:
k.8.1.1
Length = 108
Score = 34.1 bits (76), Expect = 0.031
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 476 DAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEEL 535
+ LK+A Q ++++ + L KK GGE LL++A Q Q L AQEL + EE L
Sbjct: 30 EELLKQALQQAQQLLQQAQELAKKG-GGGEELLKQALQQAQQLLQQAQELAKKGGGEELL 88
Query: 536 KKNIQEKDAERIDMEE 551
K+ +Q+ +E
Sbjct: 89 KQALQQAQQLLQQAQE 104
Score = 33.3 bits (74), Expect = 0.067
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 479 LKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKN 538
LK+A Q ++++ + L KK GGE LL++A Q Q L AQEL + EEL K
Sbjct: 6 LKQALQQAQQLLQQAQELAKKG--GGEELLKQALQQAQQLLQQAQELAKKGGGGEELLKQ 63
Query: 539 IQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582
++ + + ++ + E L + L++ +L A+E K
Sbjct: 64 ALQQAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQELAK 107
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C
2f66_C
Length = 192
Score = 35.6 bits (81), Expect = 0.032
Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 25/192 (13%)
Query: 432 SELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVE 491
S L E V P P E + P E I + E+ H+ +E
Sbjct: 1 SRLDIIRAEMDVVPSPGLPEKVNEKSKNIPLP-----EGINLLSSKEIIDLIQTHRHQLE 55
Query: 492 KLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551
V N L + ++LE + E K +Q +E
Sbjct: 56 L--------YVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILES 107
Query: 552 KY-SSLQEESEGLSKK-----LKKVSSMLLAAKEERKDVQRENRKEIEG------FLDNV 599
KY +S Q+ SKK LKK +E + I+ F+ N
Sbjct: 108 KYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNY 167
Query: 600 RQITKEYSYQQA 611
I +Y ++
Sbjct: 168 LDIRTQYHLRRE 179
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking,
protein transport-protein binding compl; HET: GTP; 2.18A
{Legionella pneumophila}
Length = 267
Score = 36.0 bits (81), Expect = 0.034
Identities = 16/97 (16%), Positives = 39/97 (40%)
Query: 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
A +E++ + E+ K QE + ++E+K L+ + + L K K L +
Sbjct: 10 SQADKEIQKMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFE 69
Query: 579 EERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
+ D + + EI + + +++ + +
Sbjct: 70 KLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKG 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 33.4 bits (76), Expect = 0.040
Identities = 14/82 (17%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 517 LLDAAAQELEHRKQKEE--ELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSML 574
LL A QE E ++Q ++ ++K+++ + + + ++EE+ +L E+ L +K++ +
Sbjct: 6 LLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKV 65
Query: 575 LAAKEERKDVQRENRKEIEGFL 596
+ ++ +
Sbjct: 66 EEL-LSKNYHLENEVARLKKLV 86
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 36.1 bits (84), Expect = 0.043
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 518 LDAAAQELEHRKQKEEELK-KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLA 576
+ AA+ L+ RK + I E + E+ SL+EE E +++ ++
Sbjct: 50 PEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRA------- 102
Query: 577 AKEERKDVQRENRKEIEGFLDNVRQITKE 605
+ + Q + + + R+I K+
Sbjct: 103 LVVNQDNSQVQQDPQYQSLRARGREIRKQ 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.5 bits (81), Expect = 0.052
Identities = 18/119 (15%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 494 ELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY 553
L++ + + +Q+ + L ++KEEE+++ ++ E E +
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKE---KEAEL 357
Query: 554 SSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAI 612
++E +LKK ++E+K ++ + +K ++ ++ +Q Q+
Sbjct: 358 KEAEKELHEKFDRLKK------LHQDEKKKLE-DKKKSLDDEVNAFKQRKTAAELLQSQ 409
Score = 30.9 bits (69), Expect = 1.7
Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 435 KKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLE 494
+ KLEE + P E E + + + E++ Q V++++
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKR--NEFLGELQKKEEEMR------QMFVQRVK 351
Query: 495 LLQKKVLVGGENLLEKAEIQQQLLDAAAQELEH-RKQKEEELKKNIQEKDAERIDMEEKY 553
+ ++ + L EK + ++L ++LE +K ++E+ Q K A + +
Sbjct: 352 EKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Query: 554 SSLQEESEGLSKKLK 568
+ ++ K+ K
Sbjct: 412 QAGGSQTLKRDKEKK 426
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 35.0 bits (80), Expect = 0.057
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 506 NLLEKAEIQQQLLDAAAQELEHRKQ----KEEELKKNIQEKDAERIDMEEKYSSLQEESE 561
++EK + ++ E+E R Q E+ K ++ +AE + E ++
Sbjct: 54 RVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLADS 113
Query: 562 GLSKKLKKVSSMLLAAKEE 580
++K +K L E+
Sbjct: 114 EMNKLFEKTRRQLRENAED 132
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 35.2 bits (81), Expect = 0.068
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTM 148
+ + N+ +++ + V++ S ++ YG G GK++ +
Sbjct: 119 RHIHLSDIDVNNASRMEAF-SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 34.6 bits (78), Expect = 0.071
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 10/168 (5%)
Query: 436 KKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVE---- 491
K VP +P L+E + +E +E +AEL + ++ +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
Query: 492 -KLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL-----EHRKQKEEELKKNIQEKDAE 545
+E + + E L +K E ++ +A + E K EE ++ I+E +
Sbjct: 82 RAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNW 141
Query: 546 RIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
+EK + E ++ K + LA K E + + E
Sbjct: 142 IKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEEN 189
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 35.2 bits (81), Expect = 0.072
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 417 QDPKDALLIKYQKEISEL--------KKKLEEASVPPPREEPTPNPEPELDETEPCVEPS 468
Q +AL Q S +E S + + L + + +
Sbjct: 355 QTVDEALK-DAQTNSSSNNNNNNNNNNLGIEGRSSEELLKIALQEAQKTLQQAQELAKKG 413
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR 528
E++ LKRA ++ EL +K GGE LL++A Q Q L AQEL +
Sbjct: 414 G-GEEQLKRALKRADR---NLWAAQELAKKGG--GGEELLKQALQQAQQLLRQAQELAKK 467
Query: 529 KQKEEELKKNIQE 541
EE LK+ +Q+
Sbjct: 468 GGGEELLKQALQQ 480
Score = 28.3 bits (63), Expect = 9.8
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 466 EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
+ ++ LK A + Q +++ + L KK GGE L++A + AAQEL
Sbjct: 379 NNLGIEGRSSEELLKIALQEAQKTLQQAQELAKKG--GGEEQLKRALKRADRNLWAAQEL 436
Query: 526 EHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582
+ EEL K ++ + + ++ + E L + L++ +L A+E K
Sbjct: 437 AKKGGGGEELLKQALQQAQQLLRQAQELAKKGGGEELLKQALQQAQQLLQQAQELAK 493
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.1 bits (81), Expect = 0.074
Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 3/144 (2%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR 528
E I ++ EL R + + + +++ E L + A + EL+
Sbjct: 155 EQIAAQSPVELSRMFEEVSG-SIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTY 213
Query: 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN 588
K E+ + E ++ + E+E L + KK+ + L K++RK++ +
Sbjct: 214 KSPGLEVLFQGPRGS-RYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKT 272
Query: 589 RKEIEGFLDNV-RQITKEYSYQQA 611
+ LD + R++TK +
Sbjct: 273 FDYVSDHLDAIYRELTKNPNSNVE 296
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 34.8 bits (79), Expect = 0.096
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 489 MVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERID 548
M E + + + E + QL DA E+E Q ++L+ ++ +
Sbjct: 1 MSELALIQKA--------IEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMK------- 45
Query: 549 MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEG 594
++E+ + L +KL + K + E K +G
Sbjct: 46 VQEELTKSGTRLFDLEQKLASGAENPGEKKSFSERAAEELIKSWDG 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 33.9 bits (77), Expect = 0.11
Identities = 21/126 (16%), Positives = 43/126 (34%)
Query: 478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKK 537
+ + + E ++ + L+E E ++L +L +Q+ +L+
Sbjct: 4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63
Query: 538 NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLD 597
+ Q E ++EK +S L+ S A KE+ RE + +
Sbjct: 64 DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123
Query: 598 NVRQIT 603
R
Sbjct: 124 AKRATI 129
Score = 28.5 bits (63), Expect = 5.2
Identities = 18/141 (12%), Positives = 45/141 (31%), Gaps = 3/141 (2%)
Query: 453 NPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAE 512
+ + E + + E EL Q + + +LE + +L +
Sbjct: 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ 66
Query: 513 IQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572
+ ++A ++LE + + K + + + L + L + +
Sbjct: 67 RLKYEVEALKEKLE---HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123
Query: 573 MLLAAKEERKDVQRENRKEIE 593
A +D ++ + IE
Sbjct: 124 AKRATIMSLEDFEQRLNQAIE 144
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 31.8 bits (72), Expect = 0.17
Identities = 12/69 (17%), Positives = 34/69 (49%)
Query: 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
+ A E + +++ + ++ + E+ +++K ++E E S+ +K+ L A+
Sbjct: 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78
Query: 579 EERKDVQRE 587
++ D + E
Sbjct: 79 KKATDAEAE 87
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 32.4 bits (74), Expect = 0.20
Identities = 13/86 (15%), Positives = 37/86 (43%)
Query: 483 QSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEK 542
++D +++ ++ + + LL ++ +Q L+ + + +R + K ++
Sbjct: 56 EADPGALISRIPGELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWLMLKVKEQEKT 115
Query: 543 DAERIDMEEKYSSLQEESEGLSKKLK 568
+AER + + +E + K L
Sbjct: 116 EAERRKDFLTAARIAKEMIEMKKMLS 141
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 32.4 bits (73), Expect = 0.24
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 448 EEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQS---DHQSMVEKLELLQKKVLVGG 504
EE + L +E +E DE++ +K +S + +E E+ K+
Sbjct: 9 EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 68
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564
E+ K E + L +LE +++ E + E + E + SL+++ E L
Sbjct: 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELL 128
Query: 565 KKLKK 569
K
Sbjct: 129 SKNYH 133
Score = 32.0 bits (72), Expect = 0.28
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQ 487
Q+ ++ +KLEEA E+ E + E + E + + +LK A+ +
Sbjct: 16 QERLATALQKLEEA------EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 69
Query: 488 SMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERI 547
K E + +K+++ E+ LE+AE + +L + ELE ++ + + N++ + +
Sbjct: 70 DADRKYEEVARKLVII-ESDLERAEERAELSEGKCAELE---EELKTVTNNLKSLEDKVE 125
Query: 548 DMEEKYSSLQEESEGLSKKLK 568
++ K L+ E L K +
Sbjct: 126 ELLSKNYHLENEVARLKKLVG 146
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 31.1 bits (70), Expect = 0.26
Identities = 13/72 (18%), Positives = 33/72 (45%)
Query: 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
+ +EL+ +EE L + +++ + R + E +Q E+E L ++ +
Sbjct: 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65
Query: 578 KEERKDVQRENR 589
K ++ ++ E +
Sbjct: 66 KRQQLELDDELK 77
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 32.6 bits (74), Expect = 0.27
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 471 IEDETDAELKRAQSDHQSMVEKLELLQKK---VLVGGENLLEKAEIQQQLLDAAAQELEH 527
IE E + + + + + L L + +L + L E + AA +EL
Sbjct: 61 IERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMW 120
Query: 528 RKQKEEELKKNIQEKDAERI-DMEEKYSSLQEESEGLSKKLKKVSSM---LLAAKEERKD 583
+KEEE + +E YS+L E E KK+K++ + LL +
Sbjct: 121 LNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARP 180
Query: 584 VQRENRKEIEGFLDNVRQITKE 605
+ ++ + Q+
Sbjct: 181 TVESFQAALQTQWSWMLQLCCC 202
Score = 30.3 bits (68), Expect = 1.5
Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 458 LDETEPCVEPSEVIEDETDAE--LKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQ 515
++E + V+ +E D E L + HQS+ E +++ G+ +
Sbjct: 21 VEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYR 80
Query: 516 QLLDAAAQELE-------HRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568
L + R + E L + E + + EK +E S +
Sbjct: 81 DCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEK--EEEEVGFDWSDRNT 138
Query: 569 KVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFI 617
+++ + ++++ K+I+ + ++ +E + ++ F
Sbjct: 139 NMTAKKESYSALMRELE-LKEKKIKELQNAGDRLLREDHPARPTVESFQ 186
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 33.3 bits (75), Expect = 0.27
Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 25/215 (11%)
Query: 394 EETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPN 453
++S ++ V K C N ++L+ PPPR +P
Sbjct: 14 SMSVSIYPSSAEVLKACRNLGKNGLSNSSILLDKC---------------PPPRPPSSPY 58
Query: 454 PEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEI 513
P D+ P PS +E++ DA + + +++ L ++
Sbjct: 59 PPLPKDKLNPPT-PSIYLENKRDAFFPPLHQFCTNPNNPVTVIR--------GLAGALKL 109
Query: 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSM 573
L + + E + +Q D E D ES + K +
Sbjct: 110 DLGLFSTKTLVEANNEHMVEVRTQLLQPAD-ENWDPTGTKKIWHCESNRSHTTIAKYAQY 168
Query: 574 LLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSY 608
++ +E + E R + D+ +
Sbjct: 169 QASSFQESLREENEKRSHHKDHSDSESTSSDNSGR 203
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.6 bits (73), Expect = 0.27
Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 18/163 (11%)
Query: 418 DPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDA 477
DP A L + + EI+ ++ + + + + + E +
Sbjct: 22 DPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANG 81
Query: 478 ELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKK 537
+ Q+ E E++ + E Q + L+ + +++
Sbjct: 82 PADGYAAIAQADRLTQE---------PESIRKWREEQ-------RKRLQELDAASKVMEQ 125
Query: 538 NIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE 580
+EK + D+EE E+ E + +
Sbjct: 126 EWREKAKK--DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 166
Score = 30.7 bits (68), Expect = 1.4
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 519 DAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAK 578
D QE E ++ EE +K +QE DA + +E+++ K +
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAAS---KVMEQEWREKAK------KDLEEWNQRQS 143
Query: 579 EERKDVQRENRKEIEGFLDN 598
E+ + + NR + F
Sbjct: 144 EQVEKNKINNRIADKAFYQQ 163
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 32.2 bits (73), Expect = 0.31
Identities = 28/161 (17%), Positives = 64/161 (39%), Gaps = 27/161 (16%)
Query: 458 LDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKK---VLVGGENLLEK---- 510
++ +E E D + EL HQ + ++E K L GE+LL++
Sbjct: 20 MESIIRQIETQERPRDVSSVELLMKY--HQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 511 -AEIQQQL--LDAAAQELEHR-KQKEEELKKNIQ----EKDAERID--MEEKYSSLQ--- 557
EI+++L + + +E+ + + + E L+ ++ +DA + + + L
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 558 -----EESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
+ E L K+ + + E +++ E++
Sbjct: 138 FGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 31.3 bits (70), Expect = 0.34
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 31/144 (21%)
Query: 415 VNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDE 474
VN+D KD L+ + +EIS LK +LE E++ V + E
Sbjct: 8 VNKDEKDHLIERLYREISGLKAQLENMKT----------------ESQRVVLQLKGHVSE 51
Query: 475 TDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEE 534
+A+L Q Q + E L+ + L ++ E ++ E
Sbjct: 52 LEADLAEQQHLRQQAADDCEFLRA---------------ELDELRRQREDTEKAQRSLSE 96
Query: 535 LKKNIQEKDAERIDMEEKYSSLQE 558
+++ Q + ++EKYS L +
Sbjct: 97 IERKAQANEQRYSKLKEKYSELVQ 120
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 31.9 bits (71), Expect = 0.36
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 494 ELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKY 553
+L + L + + + L+ A + ++ EEL+K Q + +R D+E K
Sbjct: 14 DLAANNPAIQNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKL 73
Query: 554 SSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605
LQ++ + + L EE+K+ + + KE
Sbjct: 74 KELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKE 125
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 32.6 bits (74), Expect = 0.42
Identities = 8/100 (8%), Positives = 31/100 (31%)
Query: 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKE 532
+ L + ++ + + ++ +Q + + +E+ +
Sbjct: 41 QSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASI 100
Query: 533 EELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSS 572
+I+ +K +L+E+ L + ++
Sbjct: 101 LTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 140
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 32.0 bits (72), Expect = 0.52
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 401 RYASRVKKICNKARVNQDPK-DALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELD 459
RY ++ + KA+ + L + +I E KK+L + E+
Sbjct: 16 RYKEKLLQ---KAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHT 72
Query: 460 ETEPCVEPSEVIEDETDAELKRAQSDHQSMVE--KLELLQKK 499
E +E + ++++ + KL+ ++
Sbjct: 73 NKEHKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDL 114
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 29.9 bits (68), Expect = 0.57
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 493 LELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK-EEE-------------LKKN 538
+ L+++V + +KA ++ + D A+++ ++K +EE +++
Sbjct: 2 MRELRRQVD---QLTNDKARVEVER-DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 57
Query: 539 IQEKDAERIDMEEKYSSLQEE 559
+ R+D+E K SLQEE
Sbjct: 58 VDNASLARLDLERKVESLQEE 78
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.1 bits (72), Expect = 0.65
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 514 QQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGL--------SK 565
++L +++ K K + K + + + ER + K ++ E E + +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 566 KLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLE 623
KLK + L E+ K KE+E + QQ I+++ ++ LE
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLE 409
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.1 bits (74), Expect = 0.70
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
D + L R ++ L + E D R + + E L + K+S +
Sbjct: 11 PDYVKERLATRDKELVSLVDKVLELDKRR-------REIIKRLEALRSERNKLSKEIGKL 63
Query: 578 KEERKDVQ------RENRKEIEGFLDNVRQITKE 605
K E KD +E ++EI+ + +R++ +E
Sbjct: 64 KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 30.6 bits (69), Expect = 0.73
Identities = 10/102 (9%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564
+ + +K + L + ++ E +L+ +++ + + + L+++
Sbjct: 16 QQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRT--KLEKDVMAQR 73
Query: 565 KKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEY 606
+ + A+ +D R + +E + ++ K
Sbjct: 74 QTFAQ------KAQAFEQDRARRSNEERGKLVTRIQTAVKSV 109
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 31.3 bits (70), Expect = 0.80
Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 6/144 (4%)
Query: 466 EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
E + +E ET+ + D + + K++ + E+ E+ +Q ++ EL
Sbjct: 70 EFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDF---QKKWQEEMELYRQKVEPLRAEL 126
Query: 526 EHR-KQKEEELKKNIQEKDAE-RIDMEEKYSSLQEESEGLSKKLK-KVSSMLLAAKEERK 582
+ +QK EL++ + E R +L+ S +L+ ++++ L A KE
Sbjct: 127 QEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGG 186
Query: 583 DVQRENRKEIEGFLDNVRQITKEY 606
E + L + + K
Sbjct: 187 ARLAEYHAKATEHLSTLSEKAKPA 210
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 29.9 bits (68), Expect = 0.93
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 493 LELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK-EEE-------------LKKN 538
+ L+++V + +KA ++ + D A+++ ++K +EE +++
Sbjct: 22 MRELRRQVD---QLTNDKARVEVER-DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 77
Query: 539 IQEKDAERIDMEEKYSSLQEE 559
+ R+D+E K SLQEE
Sbjct: 78 VDNASLARLDLERKVESLQEE 98
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 31.4 bits (71), Expect = 1.0
Identities = 23/193 (11%), Positives = 56/193 (29%), Gaps = 21/193 (10%)
Query: 426 KYQKEISELKKKLEEASVPPPREEPTPNP-------------EPELDETEPCVEPSEVIE 472
+ I + L E E+ + E ++ E ++
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGEN---LLEKAEIQQQLLDAAAQELEHRK 529
D S + E + +++ L ++ Q E K
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIK 126
Query: 530 QKEEELKKNIQEKDAERI-DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN 588
+K+ + +D + ++ +K+ L+ E ++ +L ++ D
Sbjct: 127 EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQG----VLDTGKKLSDDNTIG 182
Query: 589 RKEIEGFLDNVRQ 601
++EI+ L
Sbjct: 183 KEEIQQRLAQFVD 195
Score = 30.6 bits (69), Expect = 1.9
Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 23/165 (13%)
Query: 455 EPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGG---ENLLEKA 511
E + E + V + D T Q++ +K + L+ ++ + +L+
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGV---------QNLRKKHKRLEAELAAHEPAIQGVLDTG 172
Query: 512 EIQQQLLDAAAQELEHR----KQKEEELKKNIQEKDA---ERIDMEEKYSSLQEESEGLS 564
+ +E++ R +ELK+ + E ++ ++ ++++EE ++
Sbjct: 173 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWIN 232
Query: 565 KKLKKVSSMLLAAKEERKDVQREN----RKEIEGFLDNVRQITKE 605
+K+ V+S + + D V +
Sbjct: 233 EKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN 277
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 31.4 bits (70), Expect = 1.0
Identities = 10/136 (7%), Positives = 39/136 (28%), Gaps = 4/136 (2%)
Query: 466 EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
+ + ++ + + + + + + +++Q A
Sbjct: 321 IRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIG 380
Query: 526 EHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ 585
+ K EE+ ++ + D + + + K L + ++
Sbjct: 381 PWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDK----LEGDHQLIQEAL 436
Query: 586 RENRKEIEGFLDNVRQ 601
+ K ++++R
Sbjct: 437 VFDNKHTNYTMEHIRV 452
Score = 30.2 bits (67), Expect = 2.8
Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 6/129 (4%)
Query: 480 KRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNI 539
+ A + + + L+ + E ++ +Q++L D +H+ K +E +
Sbjct: 18 RLASELLEWIRRTIPWLENRTP---EKTMQ--AMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 540 QEKDAERIDMEEKYSSLQEESEGLS-KKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDN 598
+ + + SEG + L A++ ++ + +E
Sbjct: 73 INFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL 132
Query: 599 VRQITKEYS 607
+ ++ S
Sbjct: 133 AEKFRQKAS 141
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.8 bits (72), Expect = 1.0
Identities = 22/155 (14%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 491 EKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRK----QKEEELKKNIQEKDAER 546
++LE Q + +G L+K + + L + K E+ + +++ ++
Sbjct: 1913 DQLEEEQLHLNIG----LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968
Query: 547 IDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQREN--RKEIEGFLDNVRQITK 604
E K +E L + K+++ + A + + + R+E+E + ++
Sbjct: 1969 QAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKL 2028
Query: 605 EYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWE 639
+ A I + + AT + + +
Sbjct: 2029 KQDEIVATITA-LEKSIATYKEEYATLIRETEQIK 2062
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 31.6 bits (71), Expect = 1.1
Identities = 14/149 (9%), Positives = 45/149 (30%)
Query: 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENR 589
Q +E L + + ++ ++ + S + + + + +++ KD +
Sbjct: 81 QLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVN 140
Query: 590 KEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELKCVAYTGNN 649
+ + I + + + + + L ++ D+ C +
Sbjct: 141 EYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVS 200
Query: 650 MRKIVPLPEDTTATQIAQPDFSHLYRYYP 678
V ++ + S +Y P
Sbjct: 201 CNIPVVSGKECEEIIRKGGETSEMYLIQP 229
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.2 bits (70), Expect = 1.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIF 169
D + A + IF YG TGTGKT ++ V + +L F H++
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVY 81
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 97 KTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGT-IFAYGQTGTGKTF 146
+ V + ++ A V + G ++ +G G GKT+
Sbjct: 20 LRASLSDVDLNDDGRIKAI-RFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil,
protein transpor; 2.10A {Salmonella typhimurium}
Length = 150
Score = 29.9 bits (67), Expect = 1.5
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 25/113 (22%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQK-------------KVLVGGENL---------LE 509
D+ L + Q E+L++L + LE
Sbjct: 21 VDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLE 80
Query: 510 KA-EIQQQLLDAAAQELEHRKQK--EEELKKNIQEKDAERIDMEEKYSSLQEE 559
KA E + L Q+++ + E++ + + +R + + +
Sbjct: 81 KAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAENRMD 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 31.0 bits (70), Expect = 1.5
Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 534 ELKKNIQEKDAERIDMEEK------YSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
E+ K + K +E+++ K + ++ + K+ +K + +++ +
Sbjct: 136 EIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKA 195
Query: 588 NRKEIEGFLDNVRQITKEYSYQQAIIQKFIPTKYLELMTQNATWNEDIGEWELK 641
KE+ ++TK Y + + F + + + E
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAF 249
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 30.6 bits (68), Expect = 1.6
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 115 YNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGV 151
+ PI D ++S N + + K + V
Sbjct: 29 FTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDV 65
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 30.4 bits (69), Expect = 1.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
ELE K + L ++ + I+++E+ L+E+S L++K+
Sbjct: 33 AELE---AKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 74
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 29.5 bits (66), Expect = 1.9
Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 483 QSDHQSMVEKLELLQKK---VLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNI 539
++E E +Q++ VL E + +++Q L+ + + + ++ EEL+K I
Sbjct: 4 DPSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWI 62
Query: 540 QEKDAERIDME-----------EKYSSLQEESEGLSKKLKKVSSM---LLAAKEERKDVQ 585
QEK D +K+ + + E + S + K+ +++ +
Sbjct: 63 QEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETI 122
Query: 586 RENRKEIEGFLDNVRQITKE 605
R E+ + + + +E
Sbjct: 123 RTRLMELHRQWELLLEKMRE 142
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 29.9 bits (67), Expect = 2.0
Identities = 22/200 (11%), Positives = 54/200 (27%), Gaps = 20/200 (10%)
Query: 426 KYQKEISELKKKLEEASVPPPREEPTPNP-------------EPELDETEPCVEPSEVIE 472
+ I + L E E+ + E ++ E ++
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 473 DETDAELKRAQSDHQSMVEKLELLQKKVLVGGEN---LLEKAEIQQQLLDAAAQELEHRK 529
D S + E + +++ L ++ Q E K
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIK 126
Query: 530 QKEEELKKNIQEKDAERIDME-EKYSSLQEESEGLSKKLKKVSSM---LLAAKEERKDVQ 585
+K+ + +D + +K+ L+ E ++ V L K+
Sbjct: 127 EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEI 186
Query: 586 RENRKEIEGFLDNVRQITKE 605
++ + ++Q+
Sbjct: 187 QQRLAQFVDHWKELKQLAAA 206
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 28.6 bits (65), Expect = 2.0
Identities = 8/52 (15%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 536 KKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
+K++ +++ +R ++E+KY ++ ++++KV+S+ ++ ++ +
Sbjct: 3 RKSLIQREKKRRNLEQKYHLIRRS---SKQEIRKVTSL-----SDKWEIHGK 46
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.5 bits (68), Expect = 2.1
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLS 564
E + ++ Q A E+ Q+ + + + R +E + Q E+E
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703
Query: 565 KKLKKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYSYQQAIIQK 615
K+L ++ +M +A + + +I E S QA ++
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESRA------EAARIEGEGSVLQAKLKA 748
Score = 30.5 bits (68), Expect = 2.4
Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 9/147 (6%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR 528
+ +E E L+R + QS EK ++ ++ ++ + A A+
Sbjct: 678 QRLEQEARGRLERQKILDQSEAEKARKELLELEA--MSMAVESTGNAK---AEAESRAEA 732
Query: 529 KQKEEELKKNIQEKDAERIDM----EEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584
+ E E + A+ + + E + E E + + + + A + +
Sbjct: 733 ARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEA 792
Query: 585 QRENRKEIEGFLDNVRQITKEYSYQQA 611
++ +R + Q
Sbjct: 793 KKFKEMTEALGPGTIRDLAVAGPEMQV 819
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 30.0 bits (67), Expect = 2.2
Identities = 17/112 (15%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 478 ELKRAQSDHQSMVEKLELLQKKV--------LVGGENLLEKAEIQQQLLDAAAQELEHRK 529
E + Q ++ ++ +Q ++ L E+ LE + + ++ L+ K
Sbjct: 21 EEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAK 80
Query: 530 QKEEELKKNIQEKDAERID-MEEKYSSLQEESEGLSKKLKKVSSMLLAAKEE 580
E ++ ++ +++ +E +Y+ L S + L + + + A E
Sbjct: 81 ISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNE 132
Score = 29.6 bits (66), Expect = 3.2
Identities = 23/172 (13%), Positives = 62/172 (36%), Gaps = 18/172 (10%)
Query: 458 LDETEPCVEPSEVIEDETDAE--------LKRAQSDHQSMVEKLELLQKKVLVGG-ENLL 508
+DE + ++ +E D E + RA + +S +++ ++ + ++ +
Sbjct: 36 VDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYT 95
Query: 509 EKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLK 568
+K + ++++ + L + E I + EK E + S++
Sbjct: 96 DKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWLNEKEE--SEVAYDWSERNS 153
Query: 569 KVSSMLLAAKEERKDVQRE---NRKEIEGFLDNVRQITKEYSYQQAIIQKFI 617
V+ ++ RE + I+ + Q+ E + I+ +
Sbjct: 154 SVARKK----SYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYR 201
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.6 bits (70), Expect = 2.2
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 21/126 (16%)
Query: 424 LIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQ 483
+I+ +++ ++E V + P PE+ + ++ + A +
Sbjct: 216 IIQGIQQL------VKETGVTKRTPQKLFTPSPEIVK-----YTHKLAMERLYAVFTDYE 264
Query: 484 SDHQSMVEKLELLQKKVLVGGENLLEK-AEIQQQLLDAAAQELEHRKQKEEELKKNIQEK 542
D S E + ++ E L EK E + + + E + +
Sbjct: 265 HDKVSRDEAVNKIRLDTE---EQLKEKFPEADPYEIIESFNVVAK-----EVFRSIVLN- 315
Query: 543 DAERID 548
+ +R D
Sbjct: 316 EYKRCD 321
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 28.8 bits (64), Expect = 2.5
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 512 EIQQQLLDAAA---QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSK 565
+ ++ LL+ E+E + K EL++ + A ++ + SLQ +
Sbjct: 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.4 bits (68), Expect = 2.6
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 22/181 (12%)
Query: 405 RVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPC 464
V+K + + + + L K + + ++LE P
Sbjct: 599 EVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR---------------FNKE 643
Query: 465 VEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQE 524
+P ++ AE S E E + E + LL
Sbjct: 644 GKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWS 703
Query: 525 LEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584
L + ++L K QEK+ E ++ + + + LK + +
Sbjct: 704 LTKERY--QKLLKQKQEKETELENLLKL-----SAKDIWNTDLKAFEVGYQEFLQRDAEA 756
Query: 585 Q 585
+
Sbjct: 757 R 757
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 30.2 bits (69), Expect = 2.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 138 GQTGTGKTFTM 148
G TGTGKTFT+
Sbjct: 39 GATGTGKTFTV 49
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.8 bits (66), Expect = 2.8
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQE------KDAERIDMEEKYSSLQE 558
E+ L+K++ QQ+ + A E RK +E + I E K+ E + +
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Query: 559 ESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
++ G + + + + + + RK
Sbjct: 70 KAAGSYYVEAQHKLVFVVRIKGINKIPPKPRK 101
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 30.2 bits (69), Expect = 2.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 138 GQTGTGKTFTM 148
G TGTGKT TM
Sbjct: 35 GATGTGKTVTM 45
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 29.5 bits (66), Expect = 3.2
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 458 LDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQL 517
+ E + + + E ++++K E K + V E + QL
Sbjct: 135 MAAREAFLNTEDKGDSLDSVE---------ALIKKHEDFDKAINVQEEKIAALQAFADQL 185
Query: 518 LDA---AAQELEHRKQKEEELKKNIQEKDAER 546
+ A A ++ R+ + + + ++ + E+
Sbjct: 186 IAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 28.3 bits (63), Expect = 3.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 511 AEIQQQLLDAAAQELEHRKQKEEELKKNI 539
AE+Q + D + K +E E++ +I
Sbjct: 14 AELQAKHGDPGDAAQQEAKHREAEMRNSI 42
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.4 bits (65), Expect = 3.8
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR 528
++ + + + Q+ + + + + G +A+I Q L AA
Sbjct: 213 AALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQM 272
Query: 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQ 585
+Q +E + Q AER + + + Q+ +++ ++ A E
Sbjct: 273 QQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQ----TFTAPGEAIRAA 325
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 29.5 bits (66), Expect = 3.8
Identities = 13/139 (9%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQ------KKVLVGGENLLEKAEIQQQLLDAAA 522
+ + D + SD ++ E + L +++ +L + + A
Sbjct: 64 DTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAK 123
Query: 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERK 582
+ + K ++L + + ++ +++ + + + L +++++ A +
Sbjct: 124 EIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQED---AARLQA 180
Query: 583 DVQRENRKEIEGFLDNVRQ 601
+ +I+ + V +
Sbjct: 181 AYAGDKADDIQKRENEVLE 199
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis,
ligase, metal-binding, phosphoprotein, inhibitor, thiol
protease inhibitor; NMR {Homo sapiens}
Length = 104
Score = 27.8 bits (61), Expect = 4.3
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 495 LLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYS 554
++++K+ + G N + L++A QK+ ++ Q + I EE+
Sbjct: 47 IMEEKIQISGSNYKSLEVLVADLVNA---------QKDSMQDESSQTSLQKEISTEEQLR 97
Query: 555 SLQEE 559
LQEE
Sbjct: 98 RLQEE 102
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 29.3 bits (65), Expect = 4.7
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 21/166 (12%)
Query: 424 LIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRA- 482
+ +++++ E LE S E +P D + E + +
Sbjct: 142 FLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGL 201
Query: 483 ----QSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKN 538
+ HQ + E + +V + +L + A + + L+A +EL+H + K E+
Sbjct: 202 DRLRRVSHQGYSTEAEFEEPRV-IDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHY 260
Query: 539 IQE---------------KDAERIDMEEKYSSLQEESEGLSKKLKK 569
++ EK++ L+ ++ L +KK
Sbjct: 261 QKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKK 306
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 28.7 bits (64), Expect = 4.8
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 453 NPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQ------KKVLVGGEN 506
E EL EP ++ + D + + ++L K++
Sbjct: 44 RLEAELAAHEPAIQ---SVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQ 100
Query: 507 LLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERI-DMEEKYSSLQEESEGLSK 565
LE++ QQ + +E +K + I + +K+ + + +
Sbjct: 101 RLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKD 160
Query: 566 KLKKVSSM---LLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605
++ V + L+ + K ++G + ++ + +
Sbjct: 161 RVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQ 203
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 29.0 bits (64), Expect = 5.0
Identities = 22/144 (15%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 466 EPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQEL 525
E + E A R +D + + +L + +V L + E + L + ++L
Sbjct: 96 ETRARLSKELQAAQARLGADMEDVCGRLVQYRGEV---QAMLGQSTEELRVRLASHLRKL 152
Query: 526 EHR-KQKEEELKKNIQEKDAE-RIDMEEKYSSLQEESEGLSKKLK-KVSSMLLAAKEERK 582
R + ++L+K + A R E S+++E L ++ + + +++ A + +
Sbjct: 153 RKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQ 212
Query: 583 DVQRENRKEIEGFLDNVRQITKEY 606
+ + + + ++ + T++
Sbjct: 213 ERAQAWGERLRARMEEMGSRTRDR 236
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 29.2 bits (66), Expect = 5.1
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKN------------IQEKDAERIDMEEKYSS 555
L+ ++ + + + + E E +KN ++E+ A EK
Sbjct: 524 LDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEK--- 580
Query: 556 LQEESEGLSKKLKKVSSMLLAAKEE-RKDVQRENRKEIEGFLDNVRQITKEYSYQQA 611
L L K L + K +E+ + + + + ++
Sbjct: 581 -----TKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNII--RGRYLAKEEE 630
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 29.1 bits (66), Expect = 5.5
Identities = 14/75 (18%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 469 EVIEDETD-AELKRAQSDHQSMVEKLELLQK--KVLVGGENLLEKAEIQQQLLDAAAQEL 525
+V+ D EL R +++ + V ++ + + + +++ A +L + A +EL
Sbjct: 37 DVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEEL 96
Query: 526 EHRKQKEEELKKNIQ 540
++ K +EE ++ ++
Sbjct: 97 KNSKVAKEEYEEKLR 111
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 28.9 bits (64), Expect = 5.5
Identities = 14/117 (11%), Positives = 44/117 (37%), Gaps = 1/117 (0%)
Query: 478 ELKRAQSDHQSMVEKLEL-LQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELK 536
E+ + + E L + + ++ + + ++ ++ Q A Q+LE+ ++ E K
Sbjct: 77 EVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSK 136
Query: 537 KNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
+ + E + L ++ ++K ++ + E +++
Sbjct: 137 RKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 28.7 bits (64), Expect = 5.6
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 5/141 (3%)
Query: 469 EVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR 528
+VI+ +TD E + + + L + + L + Q+ A Q
Sbjct: 65 KVIQGQTDPEYLLLGQRLEGLDTGWDALGRM-WESRSHTLAQCLGFQEFQKDAKQAEAIL 123
Query: 529 KQKEEELKKNIQEKDAERIDME-EKYSSLQEESEGLSKKLKKVSSM---LLAAKEERKDV 584
+E L E + K+ E K+ L+A D
Sbjct: 124 SNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK 183
Query: 585 QRENRKEIEGFLDNVRQITKE 605
+E + IE + +E
Sbjct: 184 IKEKVQLIEDRHRKNNEKAQE 204
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil,
signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP:
a.2.6.1
Length = 86
Score = 26.9 bits (59), Expect = 5.9
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQK 531
D +++ + + + + K+ G ENL + L L ++
Sbjct: 12 ADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRR 71
Query: 532 EEELKKNIQEKDA 544
+ L + +QE A
Sbjct: 72 LDLLHQQLQELHA 84
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 29.0 bits (64), Expect = 6.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 113 DIYNETARPIVDKVLSGFNGTIFAYGQTGTGKTFTMEGV 151
DI + A I V + + G TGTGKTF + +
Sbjct: 27 DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYI 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 28.6 bits (63), Expect = 6.9
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 128 SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHI 168
G+ GTGKT T+ + K F +I
Sbjct: 41 GHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYI 79
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.1 bits (60), Expect = 7.1
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 518 LDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAA 577
LD A Q +K EE K+ + + + +E++ ++ + + ++L K LL A
Sbjct: 22 LDRAEQAEADKKAAEERSKQL----EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77
Query: 578 KEERKDVQRE 587
+E + E
Sbjct: 78 EENAAKAESE 87
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 28.7 bits (63), Expect = 7.5
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 2/162 (1%)
Query: 432 SELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVE 491
+E+ K ++ V P P+ E E + D L + Q
Sbjct: 549 NEVSKIVQTYHVNMAGTNPYTTITPQ--EINGKWEHVRQLVPRRDQALMEEHARQQQNER 606
Query: 492 KLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551
+ + V G + K E ++ LE + + +K+I + +E
Sbjct: 607 LRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEG 666
Query: 552 KYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
+ +QE +K + E+ E+E
Sbjct: 667 DHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVE 708
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 27.5 bits (60), Expect = 8.2
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQL--LDAAAQELEHRK 529
E A++ ++ + ++L+ + + +A +Q +L A +LE
Sbjct: 8 EVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELS 67
Query: 530 QKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRE 587
K +EL I + + + EE + EGL K + + L + + K E
Sbjct: 68 DKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKAVNE 125
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 28.0 bits (63), Expect = 9.0
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
L + EIQ+ + DA A RK +E +N + D + K ++E + L
Sbjct: 119 LNEDEIQKMVRDAEANAEADRKFEELVQTRN--QGDH-LLHSTRK--QVEEAGDKLPADD 173
Query: 568 KKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKEYS---YQQA 611
K ++ A ++ E++ IE + + Q++++ QQ
Sbjct: 174 KT--AIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQH 218
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.5 bits (64), Expect = 9.4
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIE--DETDAELKRAQSD 485
K I E KK E E + + + ++ S++ + D + + ++
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 486 HQSMVEKLELLQKKV 500
+ + +++
Sbjct: 121 RIKLEAERFENLREI 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.358
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,464,504
Number of extensions: 654564
Number of successful extensions: 2184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1825
Number of HSP's successfully gapped: 305
Length of query: 705
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 605
Effective length of database: 3,909,693
Effective search space: 2365364265
Effective search space used: 2365364265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.3 bits)