RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11229
(705 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 301 bits (772), Expect = 4e-97
Identities = 167/423 (39%), Positives = 229/423 (54%), Gaps = 74/423 (17%)
Query: 16 ENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYST 75
+++V R RP ++ E ++G I T P T T D+
Sbjct: 5 NSIKVVARFRPQNRVEIESGGQPIVTFQ-----------------GPDTCTVDS------ 41
Query: 76 VDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIF 135
E +FTFD VFD + KQ DI++ + +P VD +L+G+NGT+F
Sbjct: 42 -----------------KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVF 84
Query: 136 AYGQTGTGKTFTM-EGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
AYGQTG GK++TM + P+ +G+IP IF I + ++++ VRVSY EIY E
Sbjct: 85 AYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMER 144
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
IRDLL+ L V E + GVYVK L ++ ++ ++M G
Sbjct: 145 IRDLLAPQN--------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGG 190
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
R+V AT MN+ SSRSH+IF I I GS + G+L LVD
Sbjct: 191 NARAVAATNMNQESSRSHSIFVITITQ----------------KNVETGSAKSGQLFLVD 234
Query: 315 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 374
LAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKLTRILQ+SL
Sbjct: 235 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESL 294
Query: 375 GGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISEL 434
GGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L ++ +++
Sbjct: 295 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL---KQMLAKA 351
Query: 435 KKK 437
K +
Sbjct: 352 KTQ 354
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 290 bits (743), Expect = 3e-93
Identities = 153/402 (38%), Positives = 208/402 (51%), Gaps = 79/402 (19%)
Query: 8 EVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTF 67
++AE N++V R RPL++ E + G IA + ++
Sbjct: 1 DLAEC----NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----------------- 39
Query: 68 DTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVL 127
K + FD VF +++ Q +YN+ A+ IV VL
Sbjct: 40 ---------------------------ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 72
Query: 128 SGFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSY 187
G+NGTIFAYGQT +GKT TMEG + PE GIIP IF +I DE+++F ++VSY
Sbjct: 73 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSY 132
Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
FEIY ++IRDLL D+ L V E + YVK + + D++
Sbjct: 133 FEIYLDKIRDLL--------------DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 178
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
+ G NR V T MNE SSRSH+IF I ++ + ++ +
Sbjct: 179 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLS---------------- 222
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 367
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+T
Sbjct: 223 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 281
Query: 368 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
RILQDSLGGN +T + P+SYN ET STL + R K I
Sbjct: 282 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 286 bits (731), Expect = 3e-91
Identities = 156/404 (38%), Positives = 211/404 (52%), Gaps = 67/404 (16%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N++V VR RP + E A I
Sbjct: 1 NIQVVVRCRPFNLAERKASAHSI----------------------------------VEC 26
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
D + ++V+ + KT+TFD VF A++KQ+D+Y PI+D+V+ G+N TIFA
Sbjct: 27 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 86
Query: 137 YGQTGTGKTFTM--------EGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYF 188
YGQTGTGKTFTM E L GIIP + IF + D +F V+VS
Sbjct: 87 YGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT--DNGTEFSVKVSLL 144
Query: 189 EIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEK 248
EIYNEE+ DLL+ + D ++ D R GV +K L +N D++ +
Sbjct: 145 EIYNEELFDLLNPSSDVSERLQMFDD---------PRNKRGVIIKGLEEITVHNKDEVYQ 195
Query: 249 IMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMG 308
I+ G R+ AT MN SSRSH++FS+ I + + V++G
Sbjct: 196 ILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM-------------KETTIDGEELVKIG 242
Query: 309 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 368
+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKLTR
Sbjct: 243 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKLTR 301
Query: 369 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 412
ILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK
Sbjct: 302 ILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 269 bits (687), Expect = 1e-84
Identities = 143/411 (34%), Positives = 200/411 (48%), Gaps = 83/411 (20%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
+V+V VRVRP + +E I + T+ NP
Sbjct: 2 SVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNP---------------------- 37
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSK--------QLDIYNETARPIVDKVLS 128
E PK+F+FD + +++ Q +Y + ++
Sbjct: 38 -------------KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE 84
Query: 129 GFNGTIFAYGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFG-HIAKADESVKFLVRVSY 187
G+N IFAYGQTG GK++TM G + +GIIP +F ++++ + V VSY
Sbjct: 85 GYNVCIFAYGQTGAGKSYTMMGKQEKDQ-QGIIPQLCEDLFSRINDTTNDNMSYSVEVSY 143
Query: 188 FEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDME 247
EIY E +RDLL+ L V+E P +G YV+DLS + +D++
Sbjct: 144 MEIYCERVRDLLNPKNKG-------------NLRVREHPLLGPYVEDLSKLAVTSYNDIQ 190
Query: 248 KIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQM 307
+M GNK R+V AT MNE SSRSHA+F+II + ++
Sbjct: 191 DLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR------------HDAETNITTEKV 238
Query: 308 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-----------KC 356
++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 239 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 298
Query: 357 THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K
Sbjct: 299 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 264 bits (675), Expect = 4e-83
Identities = 112/394 (28%), Positives = 170/394 (43%), Gaps = 70/394 (17%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
++V VR RPLS+ E DI TV N + + P
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVD------------------ 42
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARP-IVDKVLSGFNGTIFA 136
+ + F D VFD +Y T +P I+D +G + FA
Sbjct: 43 ------------MTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFA 90
Query: 137 YGQTGTGKTFTME--GVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEE 194
YGQTG+GKT+TM + GI + IF + D+ + +S++EIY +
Sbjct: 91 YGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGK 150
Query: 195 IRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGN 254
+ DLL K + E V VKDL +++ M G
Sbjct: 151 LYDLLQKR---------------KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGV 195
Query: 255 KNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVD 314
R +G + N+ SSRSHAI +I ++ + + +G++ +D
Sbjct: 196 LLRKIGVNSQNDESSRSHAILNIDLKDINK-------------------NTSLGKIAFID 236
Query: 315 LAGSERQAKTGASGQ-RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS 373
LAGSER A T + + + + IN SL L I A+ K HIP+R+S+LT++L+D
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDI 295
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVK 407
G SK++M A + P E+T++TLRY+SRVK
Sbjct: 296 FVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 262 bits (671), Expect = 4e-82
Identities = 129/415 (31%), Positives = 185/415 (44%), Gaps = 75/415 (18%)
Query: 1 MSQKELSEVAETEEIENVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHE 60
M L+ EE + V VR RPL+K+E +D+ +V ++ V P
Sbjct: 16 MECSPLTVTDPIEE-HRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKV-- 71
Query: 61 PPKTFTFDTVTPYSTVDLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETAR 120
+ + + F FD FD + +Y TAR
Sbjct: 72 ----------------------------DLTKYLENQAFCFDFAFDETASNEVVYRFTAR 103
Query: 121 PIVDKVLSGFNGTIFAYGQTGTGKTFTM---EGVNNVPELKGIIPNSFAHIFGHIAKADE 177
P+V + G T FAYGQTG+GKT TM + KGI + +F +
Sbjct: 104 PLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRY 163
Query: 178 -SVKFLVRVSYFEIYNEEIRDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLS 236
++ V V++FEIYN ++ DLL+K L V E V V L
Sbjct: 164 RNLNLEVYVTFFEIYNGKVFDLLNKKA---------------KLRVLEDSRQQVQVVGLQ 208
Query: 237 AYIANNADDMEKIMSLGNKNRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWR 296
Y+ ADD+ K++++G+ R+ G T N SSRSHA F I++
Sbjct: 209 EYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR---------------- 252
Query: 297 LWAEAQGSVQMGRLHLVDLAGSERQAKTGASG-QRLKEASKINLSLSTLGNVISALVDGK 355
G+ LVDLAG+ER A T ++ Q E ++IN SL L I AL K
Sbjct: 253 -----TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 307
Query: 356 CTHIPYRNSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
H P+R SKLT++L+DS +G NS+T M A + P + E T++TLRYA RVK++
Sbjct: 308 -AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 260 bits (665), Expect = 2e-81
Identities = 131/396 (33%), Positives = 190/396 (47%), Gaps = 61/396 (15%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RV+ R+RP K ++ +I V
Sbjct: 2 NIRVYCRIRPALKNLENSD----------TSLINVN----------------------EF 29
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
D +G+ +++ F FD +FD +D++ E +V L G+N IFA
Sbjct: 30 DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFA 88
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKA-DESVKFLVRVSYFEIYNEEI 195
YGQTG+GKTFTM GIIP++ +HIF I K + + V + EIYNE I
Sbjct: 89 YGQTGSGKTFTML-----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENI 143
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLL + + E IG+ ++ + ++++ + + +E I+ NK
Sbjct: 144 VDLLRSDNNNK----EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANK 199
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
RS +TA NE SS SH+IF I + S+ G+ G L+LVDL
Sbjct: 200 LRSTASTASNEHSSASHSIFIIHLSGSN----------------AKTGAHSYGTLNLVDL 243
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNSKLTRILQDS 373
AGSER + G RL+E IN SLS LG+VI AL D HIP+RNSKLT +LQ S
Sbjct: 244 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 303
Query: 374 LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 409
L G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 304 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 339
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 254 bits (649), Expect = 6e-79
Identities = 133/423 (31%), Positives = 207/423 (48%), Gaps = 73/423 (17%)
Query: 18 VRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTVD 77
+RV+ R+RPL +KE A + FT + +
Sbjct: 2 IRVYCRLRPLCEKEIIAKERNAIRS-------------------VDEFTVEHLWK----- 37
Query: 78 LLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFAY 137
+ K +D VFD N+ Q D++ +T + +V + G+N IFAY
Sbjct: 38 ---------------DDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAY 81
Query: 138 GQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKADESVKFLVRVSYFEIYNEEIRD 197
GQTG+GKTFT+ G ++ P + P + + +F + K F ++ E+Y + + D
Sbjct: 82 GQTGSGKTFTIYGADSNPG---LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVD 138
Query: 198 LLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNKNR 257
LL + + L++ + D V V++++ + ++++ I+ G++ R
Sbjct: 139 LLLPKQAKRLKLDIKKD-----------SKGMVSVENVTVVSISTYEELKTIIQRGSEQR 187
Query: 258 SVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDLAG 317
T MNE SSRSH I S+IIE+ ++ G+L VDLAG
Sbjct: 188 HTTGTLMNEQSSRSHLIVSVIIES----------------TNLQTQAIARGKLSFVDLAG 231
Query: 318 SERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGN 377
SER K+G++G +LKEA IN SLS LG+VISAL HIPYRN KLT ++ DSLGGN
Sbjct: 232 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQHIPYRNHKLTMLMSDSLGGN 290
Query: 378 SKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKK 437
+KT+M + PA N +ET ++L YASRV+ I N N K+ + + +K +S K++
Sbjct: 291 AKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWKEQ 348
Query: 438 LEE 440
Sbjct: 349 AGR 351
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 235 bits (600), Expect = 1e-71
Identities = 114/392 (29%), Positives = 183/392 (46%), Gaps = 72/392 (18%)
Query: 17 NVRVFVRVRPLSKKESDAGHVDIATVDLLNGIITVKNPAGSAHEPPKTFTFDTVTPYSTV 76
N+RVF R+RP + E + D + +++
Sbjct: 46 NIRVFCRIRPPLESEENRMCCTWTYHD--ESTVELQSI---------------------- 81
Query: 77 DLLNGIITVKNPAGSAHEPPKTFTFDTVFDANSKQLDIYNETARPIVDKVLSGFNGTIFA 136
+ + + F+FD VF S Q DI+ + P++ L G+N IFA
Sbjct: 82 ----------DAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFA 130
Query: 137 YGQTGTGKTFTMEGVNNVPELKGIIPNSFAHIFGHIAKAD-ESVKFLVRVSYFEIYNEEI 195
YGQTG+GKT+TM+GV G+IP + +F I ++ ++ ++ EIYNE +
Sbjct: 131 YGQTGSGKTYTMDGVPESV---GVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 187
Query: 196 RDLLSKNKDQCLEVKERPDIGVYCLEVKERPDIGVYVKDLSAYIANNADDMEKIMSLGNK 255
DLLS N+ + +E++ + YV +++ + + + +M
Sbjct: 188 YDLLS-NEQKDMEIRMAKNNKNDI-----------YVSNITEETVLDPNHLRHLMHTAKM 235
Query: 256 NRSVGATAMNEVSSRSHAIFSIIIETSSGLGGKRTTGENWRLWAEAQGSVQMGRLHLVDL 315
NR+ +TA NE SSRSHA+ + + + + +G ++LVDL
Sbjct: 236 NRATASTAGNERSSRSHAVTKLELIGRHA----------------EKQEISVGSINLVDL 279
Query: 316 AGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLG 375
A +++ + R+ E IN SLS L NVI AL+ + HIPYRNSKLT +L SLG
Sbjct: 280 A----GSESPKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLG 334
Query: 376 GNSKTVMCATVGPASYNYEETISTLRYASRVK 407
GNSKT+M V P ++E++ +LR+A+ V
Sbjct: 335 GNSKTLMFINVSPFQDCFQESVKSLRFAASVN 366
Score = 31.0 bits (69), Expect = 0.50
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 529 KQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
+Q+ EEL + +++ AE +E+ Q E K+L
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQL--FQSNME--RKEL 36
Score = 27.6 bits (60), Expect = 6.1
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 556 LQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
L++ +E L + ++ ++ L KE+ E ++
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 35.6 bits (82), Expect = 0.006
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 449 EPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSM-VEKLELLQKKVLVGGENL 507
P+ + PE + + P + +E +L+ A+ + E L+ L +K E +
Sbjct: 23 PPSFDGVPEFNASLP--RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 80
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEK 552
+ E + A ++L + + +E ++ ER+ ++K
Sbjct: 81 QKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDK 125
Score = 31.8 bits (72), Expect = 0.11
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELK-KNIQEKDAERIDMEEKYSSLQEESEGLSKK 566
EIQ++L A + + + L K E++ + +EE + ++ E L++K
Sbjct: 42 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQK 101
Query: 567 LKKVSSMLLAAKEERKDVQRENRKEIE 593
++ A + +E K E
Sbjct: 102 MESNKENREAHLAAMLERLQEKDKHAE 128
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 34.2 bits (78), Expect = 0.046
Identities = 14/145 (9%), Positives = 37/145 (25%), Gaps = 10/145 (6%)
Query: 471 IEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQ 530
D+ A R + E +++ LE+ I + Q +
Sbjct: 109 ALDQRAALADRTLGEWAEPFFGDEQRRQRHD------LERIRIANDTTLSPEQ----KAA 158
Query: 531 KEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRK 590
+ L + + + + L K M +
Sbjct: 159 RLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAA 218
Query: 591 EIEGFLDNVRQITKEYSYQQAIIQK 615
+++ + + + Y+ ++ I
Sbjct: 219 QMQQDDEAWQTRYQAYAAERDRIAA 243
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 33.9 bits (77), Expect = 0.047
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 21/209 (10%)
Query: 399 TLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPEL 458
+ R A V + V+ + L + +K+ + K+ +EAS
Sbjct: 77 SEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASS-------DRCSGLLQ 129
Query: 459 DETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGE----NLLEKAEIQ 514
P E + + Q + +K +K + E L K +
Sbjct: 130 VIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT 189
Query: 515 QQLLDAAAQELEHRKQKEEELKKNIQEKDAERI----------DMEEKYSSLQEESEGLS 564
+L E K+ E E K + + ++ ME+K S QE + L+
Sbjct: 190 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 249
Query: 565 KKLKKVSSMLLAAKEERKDVQRENRKEIE 593
+K++ LL +E ++ + ++++
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLL 278
Score = 33.6 bits (76), Expect = 0.067
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 25/174 (14%)
Query: 420 KDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAEL 479
K + +++ +LKKK E P + E + E TDA L
Sbjct: 146 KPGGYRLFVQKLQDLKKKYYEE------------PRKGIQAEEILQTYLKSKESMTDAIL 193
Query: 480 KRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNI 539
+ Q+ + E K E+ A++ ++ Q +E +++ +E K +
Sbjct: 194 QTDQTLTEKEKEIEVERVKA-----ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 248
Query: 540 QEKDAERIDMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDVQRENRKEIE 593
EK ME L +E E + LL +++ R + EI+
Sbjct: 249 TEK------MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE--SRIMKNEIQ 294
Score = 30.1 bits (67), Expect = 0.89
Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 420 KDALLIKYQKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAEL 479
L KY +E + + E +E + + D+T E +E
Sbjct: 157 LQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA 216
Query: 480 KRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQ-----QQLLDAAAQELEHRKQKEEE 534
+ + M K E + ++ + L++ + QLL + L + Q++E+
Sbjct: 217 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 276
Query: 535 LKKNIQEKDAERIDMEEKYSSLQEE 559
L K +K++ M+ + LQ +
Sbjct: 277 LLKEGFQKESRI--MKNEIQDLQTK 299
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 32.0 bits (72), Expect = 0.25
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 479 LKRAQSDHQSMVEKLELLQKKVLVGGENL---LEKAEIQQQLLDAAAQELEHRKQKEEEL 535
+ +A+ DH V K+ VL L ++ E + +LD EL
Sbjct: 43 VNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSEL 102
Query: 536 KKNIQEKDAERI 547
+ ++ + ++
Sbjct: 103 RSWLESLEPRKL 114
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 30.8 bits (68), Expect = 0.32
Identities = 28/157 (17%), Positives = 67/157 (42%)
Query: 428 QKEISELKKKLEEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQ 487
K+I+EL +K ++ + ++ + D + + + E E DA K Q +
Sbjct: 28 GKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKK 87
Query: 488 SMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERI 547
+ + + L + + + +L A+ + E+ L K + + DA +
Sbjct: 88 AKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQ 147
Query: 548 DMEEKYSSLQEESEGLSKKLKKVSSMLLAAKEERKDV 584
+ EK ++++ + L + K + +L ++E++DV
Sbjct: 148 GVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQDV 184
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 29.3 bits (66), Expect = 0.43
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 511 AEIQQQLLDAAAQELEHRKQKEEELKKNI 539
AE+Q + D + K +E E++ +I
Sbjct: 7 AELQAKHGDPGDAAQQEAKHREAEMRNSI 35
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 28.4 bits (63), Expect = 0.98
Identities = 11/92 (11%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 458 LDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQL 517
+ E + + + E ++++K E K + + + + QL
Sbjct: 19 MSAREAFLNADDDANAGGNVE---------ALIKKHEDFDKAINGHEQKIAALQTVADQL 69
Query: 518 LDA---AAQELEHRKQKEEELKKNIQEKDAER 546
+ A+ ++ ++++ E ++++E E+
Sbjct: 70 IAQNHYASNLVDEKRKQVLERWRHLKEGLIEK 101
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
[TaxId: 1423]}
Length = 161
Score = 28.9 bits (65), Expect = 1.2
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551
E +L K EI +L A + ++ E +++ E D ++E
Sbjct: 49 EKVLNKREIIHAVLTGLALDQLAEQKLLPEPLQHLVETDEPLYGIDE 95
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
{Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551
E++L K E+Q +L ++ K + + +NI D ++E
Sbjct: 48 EHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDE 94
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 164
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 505 ENLLEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEE 551
++ K E+Q +L + + +E ++I +D ++E
Sbjct: 55 NRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDE 101
>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus
niger [TaxId: 5061]}
Length = 394
Score = 29.3 bits (64), Expect = 1.7
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 428 QKEISELKKKLEEASVPPPREEPTPN 453
+++ +LK + + + PP E
Sbjct: 23 DEQLDDLKTLVRLSKIAPPTYESLQA 48
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/92 (8%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 458 LDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQL 517
++E V + + + +++K E + V + + + + L
Sbjct: 13 INEKMTLVASEDYGDTLAAIQ---------GLLKKHEAFETDFTVHKDRVNDVCANGEDL 63
Query: 518 LDA---AAQELEHRKQKEEELKKNIQEKDAER 546
+ + + + + + ++++ A+R
Sbjct: 64 IKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 95
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 28.9 bits (64), Expect = 2.2
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 15/149 (10%)
Query: 379 KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKL 438
T + T+GPAS + ET+ + +K N AR+N +Y E + +
Sbjct: 32 NTGIICTIGPASRS-VETLKEM-----IKSGMNVARMNFSHGTH---EYHAETIKNVRTA 82
Query: 439 EEASVPPPREEPTPNPEPELDETEPCVEPSEVIEDETDAELKRAQSDHQSMVEK---LEL 495
E+ P P +T+ + I+D + S + K +
Sbjct: 83 TESFASDPI---LYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVDMVFASFIRKAADVHE 139
Query: 496 LQKKVLVGGENLLEKAEIQQQLLDAAAQE 524
++K + G+N+ ++I+ E
Sbjct: 140 VRKILGEKGKNIKIISKIENHEGVRRFDE 168
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 27.1 bits (60), Expect = 3.1
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 498 KKVLVGGENLLEK-AEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSL 556
+K+ +++ I + L A + EH K +E I+ E + +
Sbjct: 9 QKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQ 68
Query: 557 QEESEGLSKKLKKVSSMLLAAKEERKD 583
E E + K+V ++ + +R D
Sbjct: 69 FEIIESFNIVAKEVFRSIILNEYKRCD 95
>d1g3pa2 b.37.1.1 (A:91-217) N-terminal domains of the minor coat
protein g3p {Bacteriophage M13 [TaxId: 10870]}
Length = 127
Score = 27.5 bits (60), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 440 EASVPPPREEPTPNPEPELDETEP 463
+ + PP E+ NP P L+E++P
Sbjct: 17 DGTYPPGTEQNPANPNPSLEESQP 40
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 28.1 bits (62), Expect = 3.5
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 523 QELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
ELE K + L ++ + I+++E+ L+E+S L++K+
Sbjct: 10 AELE---AKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 26.3 bits (58), Expect = 4.8
Identities = 13/106 (12%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 472 EDETDAELKRAQSDHQSMVEKLELLQKKVLVGGENLLEKAEIQQQLLDAAAQELEHR--- 528
A+ ++ Q Q++ + + ++ ++ E E+ + DA +
Sbjct: 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQI---NETQKALEELSRAADDAEVYKSSGNILI 59
Query: 529 KQKEEELKKNIQEK----DAERIDMEEKYSSLQEESEGLSKKLKKV 570
+ ++EL + +QEK +E + + ++ + + +++
Sbjct: 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 26.9 bits (59), Expect = 7.2
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 379 KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN---QDPKDAL-LIKYQKEISEL 434
KT + T+GP + + EE ++ + + N R+N D + I+ + +
Sbjct: 3 KTKIVCTIGPKTES-EEMLAKM-----LDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSK 56
Query: 435 KKKLEEASVPPPREEPTPNP 454
K +
Sbjct: 57 TGKTAAILLDTKGPALAEKD 76
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 25.8 bits (57), Expect = 7.7
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 508 LEKAEIQQQLLDAAAQELEHRKQKEEELKKNIQEKDAERIDMEEKYSSLQEESEGLSKKL 567
L + EIQ+ + DA A RK +E +N + ++E + L
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR-----KQVEEAGDKLPADD 55
Query: 568 KKVSSMLLAAKEERKDVQRENRKEIEGFLDNVRQITKE 605
K ++ A ++ E++ IE + + Q++++
Sbjct: 56 KT--AIESALTALETALKGEDKAAIEAKMQELAQVSQK 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.358
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,519,855
Number of extensions: 123535
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 83
Length of query: 705
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 613
Effective length of database: 1,144,436
Effective search space: 701539268
Effective search space used: 701539268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.6 bits)