BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11230
(553 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 211/464 (45%), Gaps = 73/464 (15%)
Query: 48 SCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV 106
+ LH+A+ ++ +V+ LL+ N + T LH A + + L N+A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQNKAKV 73
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
N K K+ TPLH AAR G+ MV++L+++ A+ G+ LH+A R+G V
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA----REGHVETV 129
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
K A Q K F + + KY G +
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKY--------------------------GKVRVAE 163
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQ 285
L+LE+ A+ +A + T L +AV H +L IV+ LL G S + ++PLH+A ++
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 286 HIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
+ + ++LL +G + N + +
Sbjct: 224 QVEVA--------------------------------------RSLLQYGGSANAESVQG 245
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
TPLH+A + + V+LL+ A+ N+ + G PLH+ Q G+V + + LI+HG V+
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
A + TPLH+A N+ + +LL+H A V+A+T+LG PL+ A + + IV LLK
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
A+ N G T L +A ++ +++ + L V + + ++S
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 186/411 (45%), Gaps = 47/411 (11%)
Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTA 174
TPLH+A+ G+ +V KN LL++GA NV N +T
Sbjct: 16 TPLHVASFMGHLPIV------------KN-------------LLQRGASPNVSNVKVETP 50
Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGA 233
MA + + L+ V + Q LH R GH N VKL+LE A
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDD------QTPLHCAARIGHTNMVKLLLENNA 104
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLD---HGACVDSLQFIHSPLHLAIEKQHIAIV 290
N + T L IA GH++ V LL+ AC+ F +PLH+A + + +
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF--TPLHVAAKYGKVRVA 162
Query: 291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
+ G T PLH+ V N + K LL G + + TPLH
Sbjct: 163 ELLLERDAHPNAAGKNGLT---PLHVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKY 409
IA + + L+++G N QG PLH+A Q G+ + L+ AN N NK
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
TPLH+ ++ ++ + L++HG VDA T++G PL++A N+ +V+ LL+ +A+V
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
N+ + G + LH A + + I+ LL N A N ++ S G TPL +A
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSS---DGTTPLAIA 384
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 186/407 (45%), Gaps = 58/407 (14%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
A N +N + T A + T +AK L + A +N DD ++ LH AA + +V
Sbjct: 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LLLE N + N G+T LH +A+ + T + +L+ A+ K+G TPLH+AA
Sbjct: 97 KLLLENNANPNLATTAGHTPLH-IAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAA 154
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
+ G ++ +L++ AH G LHVA V +LL +G + G T
Sbjct: 155 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
+A + L+YG + E+V+ G LHL + GH V L+L K
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANA----ESVQ--GVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQ 291
AN + ++ T L + + GH+ + + L+ HG VD + + ++PLH+A +I +V
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV- 327
Query: 292 XXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
K LL H A+VN K +PLH
Sbjct: 328 -------------------------------------KFLLQHQADVNAKTKLGYSPLHQ 350
Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
A + D V+LL+K+GA N + + G PL IA + GY+++ ++++
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 18/381 (4%)
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEK 231
T +A M + P ++ L+ G + NVK + LH+ R GH K +L+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS----NVK--VETPLHMAARAGHTEVAKYLLQN 69
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIV 290
A V+AK + +T L A GH +V+ LL++ A + + H+PLH+A + H+ V
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129
Query: 291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
KG T PLH V K + + LL A+ N TPLH
Sbjct: 130 LALLEKEASQACMTKKGFT---PLH--VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKY 409
+A+ D V LL+ G + G PLHIA + V + +L+++G + NA +
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
TPLH+A ++ + + LL A + + G PL++ + ++ + + L+K V
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
+++ + G T LH+A N+ +++ LL ++AD+NAK GY+PLH A + + ++
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT----KLGYSPLHQAAQQGHTDIV 360
Query: 530 NKLLDYNPDLDVKDKNGNTAL 550
LL + +G T L
Sbjct: 361 TLLLKNGASPNEVSSDGTTPL 381
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 36/339 (10%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXX 302
T L +A GHL IV+ LL GA + S + +PLH+A H + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN- 74
Query: 303 XXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
K ++ PLH + +T M K LL + AN N+ TPLHIA + V
Sbjct: 75 --AKAKDDQTPLHCAA--RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQK 421
L++ A + +G PLH+A + G V + L+ A+ NA K TPLH+AV
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
N+ + LL G + G PL+IA + + + + LL++ + N+ G T LH
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 482 LAVKIQNVAILECLLVNKADINAKIISGIWK----------------------------- 512
LA + + ++ LL +A+ N SG+
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
GYTPLH+A N ++ LL + D++ K K G + LH
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 99/204 (48%), Gaps = 12/204 (5%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRL 60
DA NA K G+T A+ + I KLL RG + + P +G + LHIAA +N + +
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEV 227
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
R LL+Y NA G T LH A + V +L + +AN N+ NK G TPLH+
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAA--QEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
A+ G+ + VLI HG + GY LHVA V LL+ AD+N + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 345
Query: 173 TAFQMAYEMKNFPAIELFLKYGVN 196
+ A + + + L LK G +
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGAS 369
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN DD+ TPLH+A + V +L+KHGADVN D G PLH+A N
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA++ Y TPLH+A ++ ++ + LL+HGA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D+QG PLH+A G+ I L++HGA+VNAR+ TPLH+A
Sbjct: 28 DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL++GA V+A+ G PL++A + +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D+ G+T LH A I P VE+L +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGH--PEIVEVLLKHG 70
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN ++ +G TPLH+AA G+ ++V VL+ +GA ++ G LH+A V
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A + + LL+HGA V+AR G PL++A + +
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK+ A+VN+ D +G T LHLA ++ I+E LL + AD+NA+ G T
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A GH +IVE LL HGA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLHLA + H+ IV+
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN +D TPLH+A + + V +L+KHGADVN D G+ I++ N
Sbjct: 98 -VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + +G TPLH+AA G+ ++V VL+ HGA ++ G+ LH+A
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAAD 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ +G T +A + + +E+ LK+
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A + + IVE LLK A+VN+ D G T LHLA +
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NA+ G+ TPLHLA + + ++ LL + D++ +DK G T
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGL----TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ G T +A + + +E+ LK+G +V G
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD------GWTP 83
Query: 214 LHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
LHL NGH V+++L+ GA+V+A+D T L +A + GHL+IVE LL HGA V++
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA + +G T A I ++L + GA++N DG + LH+AA + +V
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+Y DVNA D G T LH A + VE+L + A+VN ++K G T I+
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAADRGHLE--IVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA I + I+E LL + AD+NA+ G +TPLH
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG----WTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA ++ + ++ LL Y D++ +D G T LH
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLH 118
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN +DN G PLH+A +G++ I L++HGA+V+A + Y TPLH+A
Sbjct: 28 DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A G PL++A + +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 AMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAV 484
T +++
Sbjct: 148 TAFDISI 154
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D+ TPLH+A S + V +L+KHGADV+ D G PLH+A
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA + TPLH+A ++ ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHN 455
I+++ N
Sbjct: 151 DISIDNGN 158
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A GHL+IVE LL HGA VD
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLHLA H+ IV+
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D TPLH+A + + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
LI +GA+VNA + TPLH+A ++ + LL+HGA VDA G PL++A +
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK+ A+VN+ D G T LHLA ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNAVDN G T LH A + VE+L +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV--SGHLEIVEVLLKHG 70
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+V+ + G TPLH+AA TG+ ++V VL+ +GA + G LH+A V
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKN 183
+LL+ GAD+N ++ FGKTAF ++ + N
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T PLHL S + + + LL HGA+V+ D TPLH+A + + V +L+K+G
Sbjct: 46 TGLTPLHLAAV--SGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
ADVN D G PLH+A G++ I L+++GA+VNA++K+ KT I+++ N
Sbjct: 104 ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+V+++D +G T LHLA +
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NA ++G TPLHLA + + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKYGADVNAFDMTG----STPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AAR G VR+LI +GA ++ G LH+A V +LL+ GAD++ + +G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN-GHQNAVKLILE 230
T +A + +E+ LKYG +V G LHL + GH V+++L+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNA------FDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 231 KGANVHAKDQLCKTALDIAVEHG 253
GA+V+A+D+ KTA DI++++G
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNG 157
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
ADVNA + G+T A VS I ++L + GA++ D G + LH+AA T ++ +V
Sbjct: 38 ADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+Y DVNA D G+T LH A + VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKYGADVNAFDMTGSTPLHLAADEGHLE--IVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVR 130
GN + +
Sbjct: 155 DNGNEDLAK 163
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA ++ I+E LL + AD++A + G+TPLH
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV----YGFTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + + ++ LL Y D++ D G+T LH
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLH 118
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L+++GA+VNA + Y TPLH+A
Sbjct: 28 DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL+HGA V+A+ G PL++A +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 ADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+A ++ + V +L+K+GADVN DN G PLH+A N
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L++HGA+VNA++ TPLH+A ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D LG+T LH A KT VE+L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAA--KTGHLEIVEVLLKY 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA G+ ++V VL+ HGA K+++G+ LH+A V
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 90/181 (49%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D L T L +A + GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLHLA + H+ IV+
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN KD E TPLH+A + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A LG PL++A + +L IVE LLK+ A+VN+ D +G T LHLA +
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL + AD+NAK ++G+TPLHLA + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKHGADVNAKD----YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 34/168 (20%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
V IL N A+VN + G TPLH+AA+TG+ ++V VL
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVL----------------------- 66
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLL 214
L+ GAD+N +N+G T +A + + +E+ LK+G +V N K + G L
Sbjct: 67 --LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV-------NAKDYEGFTPL 117
Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
HL +GH V+++L+ GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 118 HLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A + ++ + LL++GA V+A G PL++A + +
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T LHLA ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY--TP 516
V L+ A+VN++D G T LHLA K ++ I+E LL AD+NA W Y TP
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA------WDNYGATP 83
Query: 517 LHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LHLA ++ + ++ LL + D++ KD G T LH
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLH 118
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IR 59
+ ADVNA + G T A + I ++L + GA++N +G + LH+AA +
Sbjct: 69 YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLE 127
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LL+Y DVNA D G T SI + EIL+
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D+ G+ PLH+A G++ I L++HGA+VNA +K TPLH+A
Sbjct: 28 DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A G PL++A + +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 ALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN +DD KTPLH+A + V +L+KHGADVN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A G++ I L+++GA+VNA + Y TPLH+A + ++ + LL++GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
V+A+ + GK I+++ N + E L K
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 10/157 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D+ G T LH +A+IK VE+L +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLH-LAAIKGH-LEIVEVLLKHG 70
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN +K GDTPLH+AA G+ ++V VL+ +GA + G+ LH+A V
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + KTPLH+A + ++ + LL+HGA V+A ++G PL++A +
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN++D +G T LHLA ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A GK PL++A +L IVE LLK A+VN++D+ G T LHLA +
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL N AD+NA G +TPLHLA ++ + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKNGADVNATDTYG----FTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A+D KT L +A GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 270 SL-QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLHLA H+ IV+
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D TPLH+A ++ + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN ++ G TPLH+AA G+ ++V VL+ HGA + G LH+A
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N + +G T +A + + +E+ LKY
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA + G T A + I ++L + GA++N G + LH+AA ++ +V
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D G T LH A + VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAADAGHLE--IVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAA-TKNIR 59
ADVNA +K G T A + I ++L + GA++N D + G + LH+AA ++
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY---GFTPLHLAADAGHLE 127
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LL+Y DVNA D G T SI + EIL+
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L++ GA+VNA++K TPLH+A
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL+ GA V+A+ + G PL++A +L IVE LLK A+VN+ D+FG+
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
T LA+ N I E L
Sbjct: 136 TPFDLAIDNGNEDIAEVL 153
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN KD + TPLH+A + V +L+K GADVN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A + G++ I L++ GA+VNA++K TPLH+A + ++ + LL+ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V+A+ + GK P +A++ N I E L K
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D G T LH A + VE+L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKT F +A + N E+ K
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA++K TPLH+A + ++ + LL+ GA V+A+ + G PL++A +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D+ G T LHLA + ++ I+E LL AD+NA+ G T
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----GKT 136
Query: 516 PLHLAVESNNEAV 528
P LA+++ NE +
Sbjct: 137 PFDLAIDNGNEDI 149
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 39/193 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+AKD+ T L +A GHL+IVE LL GA V+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 270 SL-QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + ++PLHLA + H+ IV+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVE------------------------------------- 85
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL GA+VN KD + TPLH+A + V +L+K GADVN D G+ P +A+ N
Sbjct: 86 -VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDN 144
Query: 389 GYVAIPNLIRHGA 401
G I +++ A
Sbjct: 145 GNEDIAEVLQKAA 157
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ G T +A + +E+ LK
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK--------------- 122
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KT D+A+++G+ I E L
Sbjct: 123 -----------------------AGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A+ + G PL++A +L IVE LLK A+VN+ D+ G T LHLA + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NAK GYTPLHLA + ++ LL D++ +DK G T
Sbjct: 81 LEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA +K+G T A I ++L + GA++N DG + LH+AA + + +V
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 84
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D G T LH A + VE+L A+VN ++K G TP +A
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 122 RTGNYKMVRVL 132
GN + VL
Sbjct: 143 DNGNEDIAEVL 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA + ++ I+E LL AD+NAK GYTPLH
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLH 73
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ KDK+G T LH
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN DN G PLH+A NG++ I L+++GA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL+HGA V+A G PL++A + +L IVE LLK A+VN+ D+FG+
Sbjct: 88 AATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN D++ TPLH+A + + V +L+K+GADVN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A G++ I L++HGA+VNA + TPLH+A + ++ + LL+HGA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQL 462
V+A+ + GK I+++ N + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA DN G T LH AS VE+L N
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAAS--NGHLEIVEVLLKN 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA TG+ ++V VL+ HGA ++ G+ LH+A V
Sbjct: 70 GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL+ GAD+N ++ FGKTAF ++ + N E+
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A +GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 270 SLQFIH-SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLHLA H+ IV+
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN D++ TPLH+A + + V +L+KHGADVN D G+ I++ N
Sbjct: 98 -VLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + + + + LL +GA+VN D TPLH+A + + V +L+KHGADVN
Sbjct: 50 PLHLAAS--NGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
DN G PLH+A + G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL++GA V+A G PL++A +
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T LHLA K ++ I+E LL + AD+NA+ G T
Sbjct: 93 LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+VN+SD G T LHLA +
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL + AD+NA G+TPLHLA + + ++ LL + D++ +DK G T
Sbjct: 93 LEIVEVLLKHGADVNAYD----NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + +G TPLH+AA G+ ++V VL+ +GA + G LH+A
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N +N G T +A + + +E+ LK+
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHI-AATKNIRLV 61
ADVNAT+ +G T A + I ++L + GA++N G + LH+ AAT ++ +V
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAATGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL++ DVNA DN G+T LH A K VE+L + A+VN ++K G T I+
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAA--KYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA ++ I+E LL N AD+NA ++GI TPLH
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI----TPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + + ++ LL + D++ D +G+T LH
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLH 118
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L++ GA+VNA++K TPLH+A
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL+ GA V+A+ + G PL++A +L IVE LLK A+VN+ D+FG+
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
T LA++ + I E L
Sbjct: 136 TPFDLAIREGHEDIAEVL 153
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN KD + TPLH+A + V +L+K GADVN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A + G++ I L++ GA+VNA++K TPLH+A + ++ + LL+ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V+A+ + GK P +A+ + I E L K
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D G T LH A + VE+L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A V
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 156 ILLRKGADINVENNFGKTAFQMA 178
+LL+ GAD+N ++ FGKT F +A
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLA 141
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 39/193 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+AKD+ T L +A GHL+IVE LL GA V+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 270 SL-QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + ++PLHLA + H+ IV+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVE------------------------------------- 85
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL GA+VN KD + TPLH+A + V +L+K GADVN D G+ P +A++
Sbjct: 86 -VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
Query: 389 GYVAIPNLIRHGA 401
G+ I +++ A
Sbjct: 145 GHEDIAEVLQKAA 157
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA++K TPLH+A + ++ + LL+ GA V+A+ + G PL++A +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D+ G T LHLA + ++ I+E LL AD+NA+ G T
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----GKT 136
Query: 516 PLHLAVESNNEAVINKL 532
P LA+ +E + L
Sbjct: 137 PFDLAIREGHEDIAEVL 153
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ G T +A + +E+ LK
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK--------------- 122
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KT D+A+ GH I E L
Sbjct: 123 -----------------------AGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A+ + G PL++A +L IVE LLK A+VN+ D+ G T LHLA + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NAK GYTPLHLA + ++ LL D++ +DK G T
Sbjct: 81 LEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA +K+G T A I ++L + GA++N DG + LH+AA + + +V
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 84
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D G T LH A + VE+L A+VN ++K G TP +A
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 122 RTGNYKMVRVL 132
R G+ + VL
Sbjct: 143 REGHEDIAEVL 153
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA + ++ I+E LL AD+NAK GYTPLH
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLH 73
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ KDK+G T LH
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L+++GA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ ++ + LL++GA V+A +G PL++A + +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 AKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN +D TPLH+A + V +L+K+GADVN +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A + G++ I L+++GA+VNA + TPLH+A + ++ + LL++GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQL 462
V+A+ + GK I+++ N + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A+D T L +A GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 270 SLQFIHS-PLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+L F S PLHLA ++ H+ IV+
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D TPLH+A ++ + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D G+T LH A + + VE+L N
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLE--IVEVLLKNG 70
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN + G TPLH+AA+ G+ ++V VL+ +GA + G LH+A V
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVE 130
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL+ GAD+N ++ FGKTAF ++ + N E+
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + Y TPLH+A ++ + LL++GA V+A G PL++A + +
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK+ A+VN+ D G T LHLA ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN ++ GDTPLH+AAR G+ ++V VL+ +GA + G LH+A
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ G T +A + + +E+ LKY
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A + +L IVE LLK A+VN+ D G T LHLA K +
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NA G TPLHLA ++ + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKYGADVNADDTIG----STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D +G T LHLA ++ ++ I+E LL N AD+NA S G TPLH
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS----GSTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + + ++ LL Y D++ D G+T LH
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLH 118
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA + G T A I ++L + GA++N G + LH+AA + + +V
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+Y DVNA D +G+T LH A T VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAAD--TGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GAD N D+ G+ PLH+A G++ I L+R+GA+VNA + TPLH+A
Sbjct: 16 DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A+ G PLY+A +L IVE LLK A+VN+ D+FG+
Sbjct: 76 ASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ I N + E L
Sbjct: 136 TAFDISIDIGNEDLAEIL 153
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+ N D +TPLH+A + V +L+++GADVN +D G PLH+A
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA++ TPL++A ++ + LL+HGA V+A+ + GK
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Query: 448 YIAVEMHNLSIVEQL 462
I++++ N + E L
Sbjct: 139 DISIDIGNEDLAEIL 153
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ D NA D+ G T LH A++ + VE+L N
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLE--IVEVLLRNG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN + G TPLH+AA G+ ++V VL+ +GA K+ G L++A V
Sbjct: 59 ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL+ GAD+N ++ FGKTAF ++ ++ N E+
Sbjct: 119 VLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+ NA + Y +TPLH+A ++ + LL +GA V+A G PL++A + +
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
L IVE LLK+ A+VN+ D G T L+LA ++ I+E LL + AD+NA+
Sbjct: 81 LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA +A G+ PL++A + +L IVE LL+ A+VN+ D G T LHLA + +
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NAK +GI TPL+LA + ++ LL + D++ +DK G T
Sbjct: 81 LEIVEVLLKYGADVNAKDATGI----TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Query: 549 ALHPS 553
A S
Sbjct: 137 AFDIS 141
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+ +A D +T L +A GHL+IVE LL +GA V+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 270 SLQF-IHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ +PLHLA H+ IV+
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVE------------------------------------- 85
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN KD TPL++A + V +L+KHGADVN D G+ I++
Sbjct: 86 -VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Query: 389 G 389
G
Sbjct: 145 G 145
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD N +++G+T MA + + +E+ L+ G +V V G
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA------VDTNGTTP 71
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
LHL + GH V+++L+ GA+V+AKD T L +A GHL+IVE LL HGA V++
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+ N+ D +GRT LH+A + ++ I+E LL N AD+NA +G TPLH
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT----TPLH 73
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL Y D++ KD G T L+
Sbjct: 74 LAASLGHLEIVEVLLKYGADVNAKDATGITPLY 106
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
AD NA + G T A I ++L GA++N +G + LH+AA+ ++ +V
Sbjct: 26 ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIV 84
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+Y DVNA D G T L+ A + VE+L + A+VN ++K G T I+
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLE--IVEVLLKHGADVNAQDKFGKTAFDISI 142
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 143 DIGNEDLAEIL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L++ GA+VNA++K TPLH+A
Sbjct: 28 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL+ GA V+A+ + G PL++A +L IVE LLK A+VN+ D+FG+
Sbjct: 88 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN KD + TPLH+A + V +L+K GADVN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
G PLH+A + G++ I L++ GA+VNA++K TPLH+A + ++ + LL+ GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQL 462
V+A+ + GK I+++ N + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ DVNA D G T LH A + VE+L
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAG 70
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A V
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL+ GAD+N ++ FGKTAF ++ + N E+
Sbjct: 131 VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+AKD+ T L +A GHL+IVE LL GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 270 SL-QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + ++PLHLA + H+ IV+
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL GA+VN KD + TPLH+A + V +L+K GADVN D G+ I++ N
Sbjct: 98 -VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA++K TPLH+A + ++ + LL+ GA V+A+ + G PL++A +
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D+ G T LHLA + ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ----DKFGKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A+ + G PL++A +L IVE LLK A+VN+ D+ G T LHLA + +
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NAK GYTPLHLA + ++ LL D++ +DK G T
Sbjct: 93 LEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN K+K+G TPLH+AAR G+ ++V VL+ GA K+ GY LH+A
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ G T +A + +E+ LK
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK--------------- 134
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 135 -----------------------AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA + ++ I+E LL AD+NAK GYTPLH
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ KDK+G T LH
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 118
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA +K+G T A I ++L + GA++N DG + LH+AA + + +V
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D G T LH A + VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN DN G PLH+A +G++ I L++HGA+V+A + + TPLH+A
Sbjct: 28 DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A G PL++A + L IVE LLK A+VN+ D+FG+
Sbjct: 88 AYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D+ TPLH+A S + V +L+KHGADV+ D G PLH+A
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA + TPLH+A + + + LL+HGA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A GHL+IVE LL HGA VD
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ F ++PLHLA H+ IV+
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D + TPLH+A + + V +L+KHGADVN D G+ I++ N
Sbjct: 98 -VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL+HGA VDA G PL++A +
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T LHLA K + I+E LL + AD+NA+ G T
Sbjct: 93 LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T PLHL S + + + LL HGA+V+ D TPLH+A + V +L+K+G
Sbjct: 46 TGTTPLHLAAY--SGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
ADVN +D+ G PLH+A + GY+ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D G+ L A VR+L+ DVNA DN G T LH A + VE+L +
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA--YSGHLEIVEVLLKH 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+V+ + G TPLH+AA G+ ++V VL+ +GA + G LH+A V
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+V++SD FG T LHLA +
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL N AD+NA G+ TPLHLA + ++ LL + D++ +DK G T
Sbjct: 93 LEIVEVLLKNGADVNAMDSDGM----TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA +G+ ++V VL+ HGA + + GY LH+A
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N ++ G T +A + +E+ LK+
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N +N G T +A + +E+ LK+G +V+ G
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYTP 83
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
LHL GH V+++L+ GA+V+A D T L +A + G+L+IVE LL HGA V++
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAA-TKNIR 59
ADVNA + G T A S I ++L + GA+++ D F G + LH+AA ++
Sbjct: 38 ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF---GYTPLHLAAYWGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V +LL+ DVNA+D+ G T LH A K VE+L + A+VN ++K G T I
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAA--KWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 120 AARTGNYKMVRVL 132
+ GN + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA ++ I+E LL + AD++A + GYTPLH
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----GYTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ D +G T LH
Sbjct: 86 LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLH 118
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ N K LL +GA+VN D + KTPLH+A E+ + V LL+ GAD N D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
+ G+ PLH+A +NG+ + L+ GA+ NA++ KTPLH+A E + + LL GA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
+ G+ PL +A E N +V+ L K
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 39/190 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L+ NG+++ VK +LE GA+V+A D KT L +A E+GH ++V+ LL GA +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLHLA E H +V
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVV-------------------------------------- 86
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K LL GA+ N KD + KTPLH+A E+ + V LL+ GAD N D+ G+ PL +A ++
Sbjct: 87 KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREH 146
Query: 389 GYVAIPNLIR 398
G + L+
Sbjct: 147 GNEEVVKLLE 156
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK + A N V+ LLE DVNA D+ G T LH A ++ V++L + A+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKE--VVKLLLSQGAD 62
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
N K+ +G TPLH+AA G+ ++V++L+ GA K+ G LH+A V +L
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
L +GAD N ++ G+T +A E N ++L K G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +NG + +L+ +GA+VNA + KTPLH+A E + + LL GA +A+ G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
K PL++A E + +V+ LL A+ N+ D G+T LHLA + + +++ LL AD N
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G TPL LA E NE V+ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEVV-KLLE 156
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
K PLHL + + + + K LL GA+ N KD + KTPLH+A E+ + V LL+ GAD
Sbjct: 38 KTPLHLAAE--NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
N D+ G+ PLH+A +NG+ + L+ GA+ N + +TPL +A E N + L
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 430 LEHGAQVD 437
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 46/182 (25%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V+ L N A+VN + +G TPLH+AA G+ ++V++L+ GA K+ G LH+A
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 79
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL +GAD N +++ GKT +A E
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE--------------------------- 112
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
NGH+ VKL+L +GA+ + D +T LD+A EHG+ ++V+ L G
Sbjct: 113 -----------NGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Query: 268 VD 269
++
Sbjct: 162 LE 163
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
A E N + LLE+GA V+A GK PL++A E + +V+ LL A+ N+ D G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
+T LHLA + + +++ LL AD NAK G TPLHLA E+ ++ V+ LL
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG----KTPLHLAAENGHKEVVKLLLSQG 126
Query: 537 PDLDVKDKNGNTAL 550
D + D +G T L
Sbjct: 127 ADPNTSDSDGRTPL 140
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
ADVNA++ +G T A + + KLL +GA+ N DGK+ LH+AA + +V
Sbjct: 28 ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVV 86
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LLL D NA D+ G T LH A ++ V++L + A+ N + +G TPL +A
Sbjct: 87 KLLLSQGADPNAKDSDGKTPLHLAAENGHKE--VVKLLLSQGADPNTSDSDGRTPLDLAR 144
Query: 122 RTGNYKMVRVLIDHGAHTE 140
GN ++V++L G E
Sbjct: 145 EHGNEEVVKLLEKQGGWLE 163
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
++LGK L A E N V+ LL+ A+VN+SD G+T LHLA + + +++ LL
Sbjct: 2 SELGK-RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
AD NAK G TPLHLA E+ ++ V+ LL D + KD +G T LH
Sbjct: 61 ADPNAKDSDG----KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A G++ I L++HGA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL+HGA V+A G PL++A M +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+A + V +L+KHGADVN ID G PLH+A
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L++HGA+VNA + + TPLH+A ++ + LL+HGA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 87/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A +GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 270 SLQFIHS-PLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ + S PLHLA H+ IV+
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN D TPLH+A + V +L+KHGADVN D G+ I++ N
Sbjct: 98 -VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL+HGA V+A +G PL++A + +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D +G T LHLA + ++ I+E LL + AD+NA+ G T
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D G T LH A+ + VE+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE--IVEVLLKH 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA G+ ++V VL+ HGA + G LH+A V
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + + + LL HGA+VN D TPLH+A + V +L+KHGADVN
Sbjct: 50 PLHLAATYG--HLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
+D G PLH+A G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+VN+ D G T LHLA I +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL + AD+NA W G TPLHLA + ++ LL + D++ +DK G T
Sbjct: 93 LEIVEVLLKHGADVNA---VDTW-GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA G+ ++V VL+ HGA + G LH+A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N + +G T +A M + +E+ LK+
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
ADVNAT+ G+T A I ++L + GA++N G + LH+AA ++ +V
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL++ DVNAVD G+T LH A + + VE+L + A+VN ++K G T I+
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAAIMGHLE--IVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA ++ I+E LL + AD+NA I G TPLH
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----MGSTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL + D++ D G+T LH
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLH 118
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A G++ I L++HGA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL+HGA V+A G PL++A M +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+A + V +L+KHGADVN ID G PLH+A
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L++HGA+VNA + + TPLH+A ++ + LL+HGA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A +GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 270 SLQFIHS-PLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ S PLHLA H+ IV+
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN D TPLH+A + V +L+KHGADVN D G+ I++ N
Sbjct: 98 -VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D G T LH A+ + VE+L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE--IVEVLLKH 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA G+ ++V VL+ HGA + G LH+A V
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL+HGA V+A G PL++A + +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D +G T LHLA + ++ I+E LL + AD+NA+ G T
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + + + LL HGA+VN D TPLH+A + V +L+KHGADVN
Sbjct: 50 PLHLAATYG--HLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
+D G PLH+A G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+VN+ D G T LHLA I +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL + AD+NA W G TPLHLA + ++ LL + D++ +DK G T
Sbjct: 93 LEIVEVLLKHGADVNA---VDTW-GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA G+ ++V VL+ HGA + G LH+A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N + +G T +A M + +E+ LK+
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
ADVNAT+ G+T A I ++L + GA++N G + LH+AA ++ +V
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL++ DVNAVD G+T LH A + + VE+L + A+VN ++K G T I+
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAAIMGHLE--IVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA ++ I+E LL + AD+NA I G TPLH
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX----GSTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL + D++ D G+T LH
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLH 118
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+ V NG++ I L+++ A+VNA +K TPLH+A
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL++GA V+A G PL++A E +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D G T LH V + +E+L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLV--VNNGHLEIIEVLLKY 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN +K G TPLH+AA G+ ++V VL+ +GA ++QGY LH+A V
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+ + + + + +L+K+ ADVN D G PLH+A
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA + TPLH+A E ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++ V +L I+E LLK+ A+VN+SD+ G T LHLA +
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL AD+NA ++GYTPLHLA E + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKYGADVNAMD----YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHLVV + + + LL + A+VN D TPLH+A + V +L+K+GADVN
Sbjct: 50 PLHLVVNNG--HLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
+D QG PLH+A ++G++ I L+++GA+VNA++K+ KT I+++ N
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L + V +GHL+I+E LL + A V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
S + +PLHLA + H+ IV+
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D + TPLH+A E + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + + TPLH+ V ++ + LL++ A V+A + G PL++A +
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK+ A+VN+ D G T LHLA + ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 46/174 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+ G+ +++ VL+ + A + G+ LH+A
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAY 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL+ GAD+N + G T +A E + +E+ LKY
Sbjct: 90 RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY-------------- 135
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 136 ------------------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D FG T LHL V ++ I+E LL AD+NA S G+TPLH
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS----GWTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL Y D++ D G T LH
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLH 118
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA + GIT + + I ++L + A++N G + LH+AA + + +V
Sbjct: 38 ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+Y DVNA+D G T LH A + VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAA--EDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IR 59
+ ADVNA++K G T A I ++L + GA++N G + LH+AA +
Sbjct: 69 YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLE 127
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LL+Y DVNA D G T SI + EIL+
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ N K L+ +GA+VN D + +TPLH A E+ + V LL+ GADVN D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
+ G+ PLH A +NG+ + LI GA+VNA++ +TPLH A E + + L+ GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V+ G+ PL +A E N +V+ L K
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYA 410
A E+ D V L+++GADVN D+ G+ PLH A +NG+ + L I GA+VNA++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
+TPLH A E + + L+ GA V+A+ G+ PL+ A E + +V+ L+ A+VN
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 471 SSDQFGRTVLHLAVKIQNVAILECL 495
+SD GRT L LA + N +++ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK + A N V+ L+E DVNA D+ G T LH A ++ V++L + A+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKE--VVKLLISKGAD 62
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VN K+ +G TPLH AA G+ ++V++LI GA K+ G LH A V +L
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
+ KGAD+N ++ G+T +A E N ++L K G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 39/189 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L+ NG+++ VK ++E GA+V+A D +T L A E+GH ++V+ L+ GA V+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLH A E H +V
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVV-------------------------------------- 86
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K L+ GA+VN KD + +TPLH A E+ + V LL+ GADVN D+ G+ PL +A ++
Sbjct: 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 389 GYVAIPNLI 397
G + L+
Sbjct: 147 GNEEVVKLL 155
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +NG + +LI +GA+VNA + +TPLH A E + + L+ GA V+A+ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
+ PL+ A E + +V+ L+ A+VN+ D GRT LH A + + +++ L+ AD+N
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G TPL LA E NE V+ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEVV-KLLE 156
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+ PLH + + + + K L+ GA+VN KD + +TPLH A E+ + V LL+ GAD
Sbjct: 38 RTPLHHAAE--NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
VN D+ G+ PLH A +NG+ + L I GA+VN + +TPL +A E N + L
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 430 LEHGA 434
+ G
Sbjct: 156 EKQGG 160
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AA GN V+ LI++GA + G LH A V +L+ KGAD+N +++ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKH--GGQLLLHLVRNGHQNAVKLIL 229
+T A E + ++L + G +V N K G L H NGH+ VKL++
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADV-------NAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
KGA+V+ D +T LD+A EHG+ ++V+ L G ++
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
A E N + L+E+GA V+A G+ PL+ A E + +V+ L+ A+VN+ D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
RT LH A + + +++ L+ AD+NAK G TPLH A E+ ++ V+ L+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDG----RTPLHHAAENGHKEVVKLLISKG 126
Query: 537 PDLDVKDKNGNTAL 550
D++ D +G T L
Sbjct: 127 ADVNTSDSDGRTPL 140
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
ADVNA++ +G T A + + KLL +GA++N DG++ LH AA + +V
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVV 86
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D+ G T LH A ++ V++L + A+VN + +G TPL +A
Sbjct: 87 KLLISKGADVNAKDSDGRTPLHHAAENGHKE--VVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 122 RTGNYKMVRVLIDHGAHTE 140
GN ++V++L G E
Sbjct: 145 EHGNEEVVKLLEKQGGWLE 163
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKH--GGQLLL 214
L+ GAD+N ++ G+T A E + ++L + G +V N K G L
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-------NAKDSDGRTPLH 75
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQF 273
H NGH+ VKL++ KGA+V+AKD +T L A E+GH ++V+ L+ GA V+ S
Sbjct: 76 HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD 135
Query: 274 IHSPLHLAIEKQHIAIVQ 291
+PL LA E + +V+
Sbjct: 136 GRTPLDLAREHGNEEVVK 153
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
++LGK L A E N V+ L++ A+VN+SD GRT LH A + + +++ L+
Sbjct: 2 SELGK-RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
AD+NAK G TPLH A E+ ++ V+ L+ D++ KD +G T LH
Sbjct: 61 ADVNAKDSDG----RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ N K L+ +GA+VN D + +TPLH A + + V LL+ GADVN D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
+ G+ PLH A + G+ I LI GA+VNA++ +TPLH A ++ + + L+ GA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V+ G+ PL +A E N IV+ L K
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK + A N V+ L+E DVNA D+ G T LH A K V++L + A+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA--KEGHKEIVKLLISKGAD 62
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VN K+ +G TPLH AA+ G+ ++V++LI GA K+ G LH A V +L
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
+ KGAD+N ++ G+T +A E N ++L K G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 39/189 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L+ NG+++ VK ++E GA+V+A D +T L A + GH +IV+ L+ GA V+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLH A ++ H IV
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIV-------------------------------------- 86
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K L+ GA+VN KD + +TPLH A + + V LL+ GADVN D+ G+ PL +A ++
Sbjct: 87 KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 389 GYVAIPNLI 397
G I L+
Sbjct: 147 GNEEIVKLL 155
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +NG + +LI +GA+VNA + +TPLH A ++ + + L+ GA V+A+ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
+ PL+ A + + IV+ L+ A+VN+ D GRT LH A K + I++ L+ AD+N
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G TPL LA E NE ++ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEIV-KLLE 156
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+ PLH K + + K L+ GA+VN KD + +TPLH A + + V LL+ GAD
Sbjct: 38 RTPLHYAA--KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
VN D+ G+ PLH A + G+ I L I GA+VN + +TPL +A E N + L
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 430 LEHGAQVD 437
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 46/182 (25%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V+ L N A+VN + +G TPLH AA+ G+ ++V++LI GA K+ G LH A
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +L+ KGAD+N +++ G+T A
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYA----------------------------- 110
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
+ GH+ VKL++ KGA+V+ D +T LD+A EHG+ +IV+ L G
Sbjct: 111 ---------AKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Query: 268 VD 269
++
Sbjct: 162 LE 163
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
A E N + L+E+GA V+A G+ PL+ A + + IV+ L+ A+VN+ D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
RT LH A K + I++ L+ AD+NAK G TPLH A + ++ ++ L+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG----RTPLHYAAKEGHKEIVKLLISKG 126
Query: 537 PDLDVKDKNGNTAL 550
D++ D +G T L
Sbjct: 127 ADVNTSDSDGRTPL 140
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
ADVNA++ +G T A I KLL +GA++N DG++ LH AA + + +V
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIV 86
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D+ G T LH A K V++L + A+VN + +G TPL +A
Sbjct: 87 KLLISKGADVNAKDSDGRTPLHYAA--KEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 122 RTGNYKMVRVLIDHGAHTE 140
GN ++V++L G E
Sbjct: 145 EHGNEEIVKLLEKQGGWLE 163
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 47/181 (25%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AA GN V+ LI++GA + G LH A V +L+ KGAD+N +++ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
+T A + GH+ VKL++ K
Sbjct: 71 RTPLHYA--------------------------------------AKEGHKEIVKLLISK 92
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIV 290
GA+V+AKD +T L A + GH +IV+ L+ GA V+ S +PL LA E + IV
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 291 Q 291
+
Sbjct: 153 K 153
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
++LGK L A E N V+ L++ A+VN+SD GRT LH A K + I++ L+
Sbjct: 2 SELGK-RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
AD+NAK G TPLH A + ++ ++ L+ D++ KD +G T LH
Sbjct: 61 ADVNAKDSDG----RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH 108
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D+ G PLH+A G++ I L+++GA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ ++ + LL++GA V+A G PL++A + +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D++G T LH A + VE+L N
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLE--IVEVLLKN 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA G+ ++V VL+ +GA +H G+ LH+A V
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+A + V +L+K+GADVN D+ G PLH+A
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ + L+++GA+VNA + TPLH+A ++ + LL+HGA V+A+ + GK
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AAR G VR+L+ +GA +H G+ LH+A V +LL+ GAD+N +++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN-GHQNAVKLILE 230
T +A + + +E+ LK G +V H G LHL N GH V+++L+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNAN------DHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 43/183 (23%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV- 268
G+ LL R G + V++++ GA+V+A D + T L +A GHL+IVE LL +GA V
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 269 --DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
DSL +PLHLA ++ H+ +V+
Sbjct: 75 ADDSLGV--TPLHLAADRGHLEVVE----------------------------------- 97
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
LL +GA+VN D TPLH+A + V +L+KHGADVN D G+ I++
Sbjct: 98 ---VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 387 QNG 389
NG
Sbjct: 155 DNG 157
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL++GA V+A LG PL++A + +
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L +VE LLK A+VN++D G T LHLA I ++ I+E LL + AD+NA+ G T
Sbjct: 93 LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A +G PL++A +L IVE LLK A+VN+ D G T LHLA +
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ ++E LL N AD+NA G+TPLHLA + ++ LL + D++ +DK G T
Sbjct: 93 LEVVEVLLKNGADVNAND----HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + + + LL +GA+VN D TPLH+A + + V +L+K+GADVN
Sbjct: 50 PLHLAAYFG--HLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
D+ G PLH+A G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+SD G T LHLA ++ I+E LL N AD+NA G+ TPLH
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV----TPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + + V+ LL D++ D NG T LH
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATKN-IR 59
ADVNA++ G T A I ++L + GA++N DD G + LH+AA + +
Sbjct: 38 ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN---ADDSLGVTPLHLAADRGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V +LL+ DVNA D+ G T LH A+I + VE+L + A+VN ++K G T I
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLE--IVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 120 AARTGNYKMVRVL 132
+ GN + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA + G+T A + ++L + GA++N +G + LH+AA ++ +V
Sbjct: 71 ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIV 129
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL++ DVNA D G T SI + EIL+
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A G++ I L+++GA+VNA++ TPLH+A
Sbjct: 28 DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ ++ + LL++GA V+A G PL++A + +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN +D TPLH+A + V +L+K+GADVN D+ G PLH+A +
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA + + TPLH+A ++ ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D G T LH A + VE+L N
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLE--IVEVLLKN 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN K+ G TPLH+AAR G+ ++V VL+ +GA + G+ LH+A V
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNAR+ TPLH+A ++ + LL++GA V+A+ LG PL++A +
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+SD G T LHLA K ++ I+E LL N AD+NA+ G T
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 43/183 (23%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV- 268
G+ LL R G + V++++ GA+V+A+D T L +A GHL+IVE LL +GA V
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 269 --DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
DSL +PLHLA + H+ IV+
Sbjct: 75 AKDSLGV--TPLHLAARRGHLEIVE----------------------------------- 97
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
LL +GA+VN D TPLH+A + + V +L+K+GADVN D G+ I++
Sbjct: 98 ---VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 387 QNG 389
NG
Sbjct: 155 DNG 157
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+AR G PL++A +L IVE LLK A+VN+ D G T LHLA + +
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL N AD+NA G+TPLHLA + + ++ LL D++ +DK G T
Sbjct: 93 LEIVEVLLKNGADVNASDS----HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AAR G VR+L+ +GA ++ G+ LH+A V +LL+ GAD+N +++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILE 230
T +A + +E+ LK G +V H G LHL + GH V+++L+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSH------GFTPLHLAAKRGHLEIVEVLLK 134
Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T PLHL + + + LL +GA+VN KD TPLH+A + V +L+K+G
Sbjct: 46 TGWTPLHLAAH--FGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
ADVN D+ G PLH+A + G++ I L+++GA+VNA++K+ KT I+++ N
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA ++ I+E LL N AD+NAK G+ TPLH
Sbjct: 30 VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV----TPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ D +G T LH
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPLH 118
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
ADVNA + G T A I ++L + GA++N D G + LH+AA + +
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL---GVTPLHLAARRGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V +LL+ DVNA D+ G T LH A K VE+L N A+VN ++K G T I
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAA--KRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 120 AARTGNYKMVRVL 132
+ GN + +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA + G+T A I ++L + GA++N G + LH+AA + + +V
Sbjct: 71 ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIV 129
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL+ DVNA D G T SI + EIL+
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A G++ I L+++GA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A+ G PL++A +L IVE LLK+ A+VN+ D+FG+
Sbjct: 88 AHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISINNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN D TPLH+A + V +L+K+GADVN D G PLH+A
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA++ TPLH+A + ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I++ N + E L K
Sbjct: 151 DISINNGNEDLAEILQKL 168
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D + T L +A GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 270 SLQFIHS-PLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + S PLHLA H+ IV+
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN KDD TPLH+A + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A +G PL++A +L IVE LLK A+VN+ D G T LHLA +
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL N AD+NAK +GI TPLHLA + ++ LL Y D++ +DK G T
Sbjct: 93 LEIVEVLLKNGADVNAKDDNGI----TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D +G T LH A + VE+L N
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLE--IVEVLLKN 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPLH+AA G+ ++V VL+ +GA K+ G LH+A V
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ N E+ K
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL++GA V+A LG PL++A +
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T LHLA ++ I+E LL AD+NA+ G T
Sbjct: 93 LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++ + NE
Sbjct: 149 AFDISINNGNE 159
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 313 PLHLVVQRKSWN-TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
PLHL W + + LL +GA+VN D TPLH+A + V +L+K+GADV
Sbjct: 50 PLHLAAY---WGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
N D+ G PLH+A G++ I L+++GA+VNA++K+ KT I++ N
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 49/194 (25%)
Query: 76 NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
+LG +L A+ RD V IL N A+VN + G TPLH+AA G+ ++V VL+ +
Sbjct: 13 DLGKKLLE--AARAGRDDE-VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 136 GAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAI 187
GA + G LH+A V +LL+ GAD+N +++ G T +A + +
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 188 ELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALD 247
E+ LKY GA+V+A+D+ KTA D
Sbjct: 130 EVLLKY--------------------------------------GADVNAQDKFGKTAFD 151
Query: 248 IAVEHGHLKIVEFL 261
I++ +G+ + E L
Sbjct: 152 ISINNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA ++ I+E LL N AD+NA G TPLH
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT----LGSTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ KD NG T LH
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLH 118
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
ADVNA + G T A I ++L + GA++N + G + LH+AA ++ +V
Sbjct: 38 ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D+ G T LH A+ + VE+L A+VN ++K G T I+
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLE--IVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 NNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+ PLHL ++ + + K LL GA+VN KD +TPLH+A + + V LL++ GAD
Sbjct: 3 RTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
VN D G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 430 LEHGA 434
LE GA
Sbjct: 121 LEAGA 125
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVN 404
+TPLH+A + + V LL++ GADVN D G+ PLH+A +NG++ + L+ GA+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
A++K +TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 465 FKA 467
A
Sbjct: 123 AGA 125
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 378 GQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + LLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
+A+ + G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
+TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+ A+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
N+ D+ GRT LHLA + ++ +++ LL AD+NAK + G TPLHLA + + V+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVV 117
Query: 530 NKLLD 534
LL+
Sbjct: 118 KLLLE 122
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 34/156 (21%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK 172
G TPLH+AAR G+ ++V+ +LL GAD+N ++ G+
Sbjct: 2 GRTPLHLAARNGHLEVVK-------------------------LLLEAGADVNAKDKNGR 36
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLV-RNGHQNAVKLILE 230
T +A + ++L L+ G +V N K G+ LHL RNGH VKL+LE
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADV-------NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
GA+V+AKD+ +T L +A +GHL++V+ LL+ GA
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
NAK + G TPLHLA + + V+ LL+ D++ KDKNG T LH
Sbjct: 62 NAKDKN----GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVD 70
G T A + + KLL E GA++N +G++ LH+AA + +V+LLLE D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 71 VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
VNA D G T LH A + V++L A+VN K+K G TPLH+AAR G+ ++V+
Sbjct: 61 VNAKDKNGRTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 131 VLIDHGAH 138
+L++ GA+
Sbjct: 119 LLLEAGAY 126
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G T LH A + V++L A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2 GRTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
K+ G LH+A V +LL GAD+N ++ G+T +A + ++L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 190 FLKYGV 195
L+ G
Sbjct: 120 LLEAGA 125
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN DD TPLH+A + + V +L+K+GADVN D+ G PLH+A +
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L++HGA+VNA ++ TPLH+A + + LL+HGA V+A+ LG
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Query: 448 YIAVEMHNLSIVEQL 462
I++ + E L
Sbjct: 143 DISINQGQEDLAEIL 157
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D+ G PLH+A NG + I L+++GA+VNA + TPLH+A
Sbjct: 20 DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA 79
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL+HGA V+A + G PL++A L IVE LLK A+VN+ D G
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGL 139
Query: 478 TVLHLAV 484
T +++
Sbjct: 140 TAFDISI 146
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L AA VR+L+ DVNA D+ G T LH A+ VE+L N
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAA--NGQLEIVEVLLKNG 62
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN + G TPLH+AA G+ ++V VL+ HGA + G+ LH+A V
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 156 ILLRKGADINVENNFGKTAFQMA 178
+LL+ GAD+N ++ G TAF ++
Sbjct: 123 VLLKHGADVNAQDALGLTAFDIS 145
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A + + LL++GA V+A G PL++A +
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
L IVE LLK A+VN+ D+ G T LHLA + I+E LL + AD+NA+ G+
Sbjct: 85 LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGL 139
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 39/190 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL G + V++++ GA+V+A D T L +A +G L+IVE LL +GA V+
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 270 SLQFIH-SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLHLA H+ IV+
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVE------------------------------------- 89
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN D TPLH+A S + V +L+KHGADVN D G I++
Sbjct: 90 -VLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQ 148
Query: 389 GYVAIPNLIR 398
G + +++
Sbjct: 149 GQEDLAEILQ 158
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A L IVE LLK A+VN+SD G T LHLA +
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL + AD+NA +G +TPLHLA S ++ LL + D++ +D G T
Sbjct: 85 LEIVEVLLKHGADVNAYDRAG----WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLT 140
Query: 549 ALHPS 553
A S
Sbjct: 141 AFDIS 145
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N D+G + LH+AA + +V +LL+ DVNA D+
Sbjct: 12 EAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS 70
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
G T LH A + VE+L + A+VN ++ G TPLH+AA +G ++V VL+ HG
Sbjct: 71 AGITPLHLAAYDGHLE--IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 137 AHTECKNHQGYNALHVAV 154
A ++ G A +++
Sbjct: 129 ADVNAQDALGLTAFDISI 146
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNAT+ G+T A + Q I ++L + GA++N G + LH+AA + +V
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYDGHLEIV 88
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL++ DVNA D G T LH A + VE+L + A+VN ++ G T I+
Sbjct: 89 EVLLKHGADVNAYDRAGWTPLHLAA--LSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
Query: 122 RTGNYKMVRVL 132
G + +L
Sbjct: 147 NQGQEDLAEIL 157
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ G T +A +E+ LK G +V G
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS------DSAGITP 75
Query: 214 LHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
LHL +GH V+++L+ GA+V+A D+ T L +A G L+IVE LL HGA V++
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D G T LHLA + I+E LL N AD+NA +GI TPLH
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI----TPLH 77
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL + D++ D+ G T LH
Sbjct: 78 LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLH 110
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ N K LL +GA+ N D + +TPLH A E+ + V LL+ GAD N D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
+ G+ PLH A +NG+ I L+ GA+ NA++ +TPLH A E + + LL GA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
+ G+ PL +A E N IV+ L K
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 39/189 (20%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L+ NG+++ VK +LE GA+ +A D +T L A E+GH +IV+ LL GA +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLH A E H IV
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIV-------------------------------------- 86
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K LL GA+ N KD + +TPLH A E+ + V LL+ GAD N D+ G+ PL +A ++
Sbjct: 87 KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREH 146
Query: 389 GYVAIPNLI 397
G I L+
Sbjct: 147 GNEEIVKLL 155
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK + A N V+ LLE D NA D+ G T LH A ++ V++L + A+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKE--IVKLLLSKGAD 62
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
N K+ +G TPLH AA G+ ++V++L+ GA K+ G LH A V +L
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVE 198
L KGAD N ++ G+T +A E N ++L K G +E
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 385 AVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +NG + +L+ +GA+ NA + +TPLH A E + + LL GA +A+ G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
+ PL+ A E + IV+ LL A+ N+ D GRT LH A + + I++ LL AD N
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G TPL LA E NE ++ KLL+
Sbjct: 131 TSDSD----GRTPLDLAREHGNEEIV-KLLE 156
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 46/182 (25%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V+ L N A+ N + +G TPLH AA G+ ++V++L+ GA K+ G LH A
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK 207
V +LL KGAD N +++ G+T A E
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE--------------------------- 112
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
NGH+ VKL+L KGA+ + D +T LD+A EHG+ +IV+ L G
Sbjct: 113 -----------NGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Query: 268 VD 269
++
Sbjct: 162 LE 163
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+ PLH + + + + K LL GA+ N KD + +TPLH A E+ + V LL+ GAD
Sbjct: 38 RTPLHYAAE--NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
N D+ G+ PLH A +NG+ I L+ GA+ N + +TPL +A E N + L
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 430 LEHGAQVD 437
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
A E N + LLE+GA +A G+ PL+ A E + IV+ LL A+ N+ D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
RT LH A + + I++ LL AD NAK G TPLH A E+ ++ ++ LL
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG----RTPLHYAAENGHKEIVKLLLSKG 126
Query: 537 PDLDVKDKNGNTAL 550
D + D +G T L
Sbjct: 127 ADPNTSDSDGRTPL 140
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 47/181 (25%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AA GN V+ L+++GA + G LH A V +LL KGAD N +++ G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
+T A E NGH+ VKL+L K
Sbjct: 71 RTPLHYAAE--------------------------------------NGHKEIVKLLLSK 92
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD-SLQFIHSPLHLAIEKQHIAIV 290
GA+ +AKD +T L A E+GH +IV+ LL GA + S +PL LA E + IV
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 291 Q 291
+
Sbjct: 153 K 153
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD NA++ +G T A + I KLL +GA+ N DG++ LH AA + +V
Sbjct: 28 ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIV 86
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LLL D NA D+ G T LH A ++ V++L + A+ N + +G TPL +A
Sbjct: 87 KLLLSKGADPNAKDSDGRTPLHYAAENGHKE--IVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 122 RTGNYKMVRVLIDHGAHTE 140
GN ++V++L G E
Sbjct: 145 EHGNEEIVKLLEKQGGWLE 163
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
++LGK L A E N V+ LL+ A+ N+SD GRT LH A + + I++ LL
Sbjct: 2 SELGKR-LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
AD NAK G TPLH A E+ ++ ++ LL D + KD +G T LH
Sbjct: 61 ADPNAKDSDG----RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 108
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A NG++ I L+++GA+VNA + TPL +A
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
++ + LL++GA V+A G PL++A +L IVE LLK A+VN+ D+FG+
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN +D TPLH+A + + V +L+K+GADVN +D+ G PL +A
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
G++ I L+++GA+VNA + TPLH+A ++ + LL++GA V+A+ + GK
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 448 YIAVEMHNLSIVEQLLKF 465
I+++ N + E L K
Sbjct: 151 DISIDNGNEDLAEILQKL 168
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ + LL++GA V+A G PL +A +
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN++D G T LHLA ++ I+E LL N AD+NA+ G T
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF----GKT 148
Query: 516 PLHLAVESNNE 526
+++++ NE
Sbjct: 149 AFDISIDNGNE 159
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DVNA D G T LH A VE+L N
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF--NGHLEIVEVLLKN 69
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
A+VN + G TPL +AA G+ ++V VL+ +GA + +G+ LH+A V
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV 129
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
+LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 39/181 (21%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A+D T L +A +GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ +PL LA H+ IV+
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL +GA+VN D E TPLH+A + V +L+K+GADVN D G+ I++ N
Sbjct: 98 -VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 389 G 389
G
Sbjct: 157 G 157
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A +L IVE LLK A+VN+ D G T L LA +
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ I+E LL N AD+NA + +G+TPLHLA + ++ LL D++ +DK G T
Sbjct: 93 LEIVEVLLKNGADVNANDM----EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
Query: 549 ALHPS 553
A S
Sbjct: 149 AFDIS 153
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 49/194 (25%)
Query: 76 NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
+LG +L A+ RD V IL N A+VN ++ G TPLH+AA G+ ++V VL+ +
Sbjct: 13 DLGKKLLE--AARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 136 GAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAI 187
GA +H G L +A V +LL+ GAD+N + G T +A + +
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV 129
Query: 188 ELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALD 247
E+ LK GA+V+A+D+ KTA D
Sbjct: 130 EVLLK--------------------------------------NGADVNAQDKFGKTAFD 151
Query: 248 IAVEHGHLKIVEFL 261
I++++G+ + E L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA + G T A + I ++L + GA++N G + L +AA ++ +V
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL+ DVNA D G+T LH A + VE+L N A+VN ++K G T I+
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLE--IVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 122 RTGNYKMVRVL 132
GN + +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA ++ I+E LL N AD+NA +G+ TPL
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM----TPLR 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LA + ++ LL D++ D G+T LH
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA + G+T + A + I ++L + GA++N +G + LH+AA ++ +V
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIV 129
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL+ DVNA D G T SI + EIL+
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 166
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 8/217 (3%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV-AIPN 395
N ++ ++PLH A E+ D +LV+ GA+++ + PL A +N ++ A+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ--LGKDPLYIAVEM 453
LI+ GA V+ ++ T LH+A ++ + + YLL +G Q+D Q G P+ A E
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEY 121
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
++ +V+ LL +++N D LH A V I E LL K D++A I G
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI----HG 177
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+PLH+A N + L + D+ +K+K G T L
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP-L 278
GH + ++++ GAN+ + +T L A E+ HL+ V++L+ GA VD S L
Sbjct: 22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81
Query: 279 HLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANV 338
HLA +K H +VQ G P+ + K + + K LL G+++
Sbjct: 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDG--GWTPMIWATEYK--HVDLVKLLLSKGSDI 137
Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV-QNGYVAIPNLI 397
N++D+E LH A S C D +L+ D++ ++ G PLHIA +N Y + +
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Query: 398 RHGANVNARNKYAKTPLHIA 417
++V +NK +TPL A
Sbjct: 198 SRDSDVTLKNKEGETPLQCA 217
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
N ++ ++PLH A E ++ + L++ GA +D ++ + PL A E ++L V+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN-KADINAKIISGIWKGYTPLHLA 520
L+K A V+ D G T LHLA K + +++ LL N + D+N + G+TP+ A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----GWTPMIWA 118
Query: 521 VESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
E + ++ LL D++++D N LH
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT--KNIRLVR 62
V+ + EG T A + + L G ++ DDG I AT K++ LV+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
LLL D+N DN N LH A D EIL + +++ N GD+PLHIAAR
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVD--IAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 123 TGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
Y V + + + KN +G L A
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 47 KSCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
+S LH AA ++ + +L++ +++ T L A + AV+ L A
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA--ENNHLEAVKYLIKAGAL 69
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTECKNHQGYNALHVA--------VGI 156
V+ K+ EG T LH+AA+ G+Y++V+ L+ +G C++ G+ + A V +
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LL KG+DIN+ +N A E+ L +C H HG L
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL-----AAKCDLHAVNIHGDSPLHIA 184
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIA 249
R + V L L + ++V K++ +T L A
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKS-CLHIAA-TKNIRLV 61
DVN + G T A + KLL +G++IN D+ ++ CLH AA + + +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDIA 160
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LL D++AV+ G++ LH A D V + + ++V +KNKEG+TPL A+
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYD--CVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 44/194 (22%)
Query: 27 IAKLLAERGANIN--------------------------------DPFPDDGKSCLHIAA 54
I +L + GANI+ DP +G +CLH+AA
Sbjct: 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85
Query: 55 TK-NIRLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE 112
K + +V+ LL +DVN D+ G T + K D V++L + +++NI++ E
Sbjct: 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD--LVKLLLSKGSDINIRDNE 143
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
+ LH AA +G + +L+ N G + LH+A V + L + +D+
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 165 NVENNFGKTAFQMA 178
++N G+T Q A
Sbjct: 204 TLKNKEGETPLQCA 217
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 44/265 (16%)
Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI 164
N ++++ +PLH AA G+ + +L+ + GA+I
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLV-------------------------QAGANI 37
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
+ + +T A E + A++ +K G V+ G LHL + GH
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP------KDAEGSTCLHLAAKKGHYE 91
Query: 224 AVKLILEKG-ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV---DSLQFIHSPLH 279
V+ +L G +V+ +D T + A E+ H+ +V+ LL G+ + D+ + I LH
Sbjct: 92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI--CLH 149
Query: 280 LAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
A + I + G + PLH+ + ++ + L ++V
Sbjct: 150 WAAFSGCVDIAEILLAAKCDLHAVNIHGDS---PLHIAARENRYDCVVL--FLSRDSDVT 204
Query: 340 VKDDENKTPLHIA-IESQCWDAVSL 363
+K+ E +TPL A + SQ W A+ +
Sbjct: 205 LKNKEGETPLQCASLNSQVWSALQM 229
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN +D+ G PLH+A + G++ I L++HGA+VNAR+ + +TPLH+A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LLE+GA V+A+ + GK I+++ N + E L K
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 66/100 (66%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ ++ + LL+HGA V+AR G+ PL++A + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LL++ A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN DD TPLH+A + + V +L+KHGADVN D G+ PLH+A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
G++ I L+ +GA+VNA++K+ KT I+++ N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA+ G+ ++V VL+ HGA ++ G LH+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A + +L IVE LLK A+VN+ D +GRT LHLA + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A + GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLHLA H+ IV+
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL +GA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA K ++ I+E LL + AD+NA+ IW G TPLH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR---DIW-GRTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + ++ LL+Y D++ +DK G TA S
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ G T +A + + +E+ LK+G +V G+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTP 83
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH V+++LE GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL +R + + + LL HGA+VN +D +TPLH+A + V +L+++GADVN
Sbjct: 50 PLHLAAKRG--HLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 373 VIDNQGQMPLHIAVQNG 389
D G+ I++ NG
Sbjct: 108 AQDKFGKTAFDISIDNG 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N D G + LH+AA + + +V +LL++ DVNA D
Sbjct: 20 EATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
G T LH A++ + VE+L A+VN ++K G T I+ GN + +L
Sbjct: 79 WGRTPLHLAATVGHLE--IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAAT-KNIR 59
ADVNA + G+T A I ++L + GA++N D + G++ LH+AAT ++
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW---GRTPLHLAATVGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LLEY DVNA D G T SI + EIL+
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN +D+ G PLH+A + G++ I L++HGA+VNA + + +TPLH+A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LLE+GA V+A+ + GK I+++ N + E L K
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN DD TPLH+A + + V +L+KHGADVN D+ G+ PLH+A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
G++ I L+ +GA+VNA++K+ KT I+++ N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 65/100 (65%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ ++ + LL+HGA V+A G+ PL++A + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LL++ A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA+ G+ ++V VL+ HGA + G LH+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A + +L IVE LLK A+VN+SD +GRT LHLA + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A + GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
S + +PLHLA H+ IV+
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL +GA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ G T +A + + +E+ LK+G +V G+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW------GRTP 83
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH V+++LE GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA K ++ I+E LL + AD+NA S W G TPLH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA---SDSW-GRTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + ++ LL+Y D++ +DK G TA S
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL +R + + + LL HGA+VN D +TPLH+A + V +L+++GADVN
Sbjct: 50 PLHLAAKRG--HLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 373 VIDNQGQMPLHIAVQNG 389
D G+ I++ NG
Sbjct: 108 AQDKFGKTAFDISIDNG 124
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N D G + LH+AA + + +V +LL++ DVNA D+
Sbjct: 20 EATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS 78
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
G T LH A++ + VE+L A+VN ++K G T I+ GN + +L
Sbjct: 79 WGRTPLHLAATVGHLE--IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAAT-KNIR 59
ADVNA + G+T A I ++L + GA++N D + G++ LH+AAT ++
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW---GRTPLHLAATVGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LLEY DVNA D G T SI + EIL+
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN D + TPLH+A + + V +L+KHGADVN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
N G PLH+A G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA ++ TPLH+A + ++ + LL+HGA V+A G PL++A +
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LLK A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D +G PLH+A ++ I L++HGA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LL+HGA V+A+ + GK I+++ N + E L K
Sbjct: 88 ALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN +++G+TPLH+AA + ++V VL+ HGA ++ G LH+A
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A + G PL++A + +L IVE LLK A+VN+ D G T LHLA +
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL + AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N + G T +A + + +E+ LK+G +V H+N G
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN---AHDN---DGSTP 83
Query: 214 LHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH V+++L+ GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D+ T L +A ++ HL+IVE LL HGA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 270 SLQFIHS-PLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ S PLHLA H+ IV+
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL HGA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN++D+ G T LHLA ++ I+E LL + AD+NA G TPLH
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH----DNDGSTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + ++ LL + D++ +DK G TA S
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA +++G T A I ++L + GA++N +DG + LH+AA ++ +V
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL++ DVNA D G T SI + EIL+
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN +D+ G PLH+A + G++ I L++HGA+VNA + + +TPLH+A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LLE+GA V+A+ + GK I+++ N + E L K
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN DD TPLH+A + + V +L+KHGADVN D G+ PLH+A
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
G++ I L+ +GA+VNA++K+ KT I+++ N
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 65/100 (65%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA + TPLH+A ++ ++ + LL+HGA V+A G+ PL++A + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LL++ A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA+ G+ ++V VL+ HGA + G LH+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A G PL++A + +L IVE LLK A+VN+SD +GRT LHLA + +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLEYGADVNAQDKF----GKTAFDISIDNGNE 126
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D G T LHLA K ++ I+E LL + AD+NA S IW G TPLH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA---SDIW-GRTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + ++ LL+Y D++ +DK G TA S
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D T L +A + GHL+IVE LL HGA V+
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLHLA H+ IV+
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL +GA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ G T +A + + +E+ LK+G +V G+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTP 83
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH V+++LE GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL +R + + + LL HGA+VN D +TPLH+A + V +L+++GADVN
Sbjct: 50 PLHLAAKRG--HLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 373 VIDNQGQMPLHIAVQNG 389
D G+ I++ NG
Sbjct: 108 AQDKFGKTAFDISIDNG 124
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N D G + LH+AA + + +V +LL++ DVNA D
Sbjct: 20 EATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
G T LH A++ + VE+L A+VN ++K G T I+ GN + +L
Sbjct: 79 WGRTPLHLAATVGHLE--IVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAAT-KNIR 59
ADVNA + G+T A I ++L + GA++N D + G++ LH+AAT ++
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LLEY DVNA D G T SI + EIL+
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 121/262 (46%), Gaps = 40/262 (15%)
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASI-KTRDPTAVEILKTNRANVNIKNKEGDTPL 117
+L+ LL NV+ +A D +T LH A + R V++L + A+V+ K+K G PL
Sbjct: 39 KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR---IVQLLLQHGADVHAKDKGGLVPL 95
Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV--------GILLRKGADINVENN 169
H A G+Y++ +L+ HGA + + LH A +LL GAD + N
Sbjct: 96 HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Query: 170 FGKTAFQMA----------YEMKNFPAIE-------------LFLKYGVNVEQCVCHENV 206
GK+A MA YE K ++ L L+ +N +Q HE
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETA 214
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H LH R + +L+L KGANV+ K++ T L +A E H ++E L HGA
Sbjct: 215 LHCAVASLHPKR---KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 267 CVDSLQFI-HSPLHLAIEKQHI 287
+++L + + LH A H+
Sbjct: 272 KMNALDSLGQTALHRAALAGHL 293
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 109/242 (45%), Gaps = 33/242 (13%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
N + D TPLH+A V LL++HGADV+ D G +PLH A G+ +
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-----------VDA------ 438
L++HGA VNA + + TPLH A + + + LL HGA VD
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169
Query: 439 RTQLGKD----PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV-----KIQNV 489
R +L + L A +L+ V++ L + Q T LH AV K + V
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
A E LL A++N K + TPLH+A E + V+ L + ++ D G TA
Sbjct: 230 A--ELLLRKGANVNEKNKDFM----TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 550 LH 551
LH
Sbjct: 284 LH 285
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 32/299 (10%)
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIE 283
V+L+L+ GA+VHAKD+ L A +GH ++ E LL HGACV+++ +PLH A
Sbjct: 74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133
Query: 284 KQHIAIVQXXXXXXXXXXXXXTKGPT--NKAPLHLVVQRKSWNTTMFK--TLLYHGANVN 339
K + + G + + AP + +R ++ FK +LL +
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE---FKGHSLLQAAREAD 190
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG-QMPLHIAVQNGYVAIPN--- 395
+ + L I +N Q + LH AV + +
Sbjct: 191 LAKVKKTLALEI-------------------INFKQPQSHETALHCAVASLHPKRKQVAE 231
Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
L+R GANVN +NK TPLH+A E+ + + L +HGA+++A LG+ L+ A
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
+L LL + ++ + G T + + + E + +D++ +++ G
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLLEASKAG 350
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 136/352 (38%), Gaps = 73/352 (20%)
Query: 213 LLHLVRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
LL R+G++ + +L N HA D T L +A + ++IV+ LL HGA V +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA- 86
Query: 272 QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
K PLH + T + L
Sbjct: 87 ----------------------------------KDKGGLVPLHNACSYGHYEVT--ELL 110
Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ---- 387
L HGA VN D TPLH A + SLL+ HGAD +++ G+ + +A
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170
Query: 388 -------NGYVAIPNLIRHGANVNARNKYA------------KTPLHIAVEQ---KNMSA 425
G+ ++ R + A +T LH AV K
Sbjct: 171 ERLTYEFKGH-SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
LL GA V+ + + PL++A E + ++E L K A +N+ D G+T LH A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
++ LL +D + IIS +G+T A + NEAV L + P
Sbjct: 290 AGHLQTCRLLLSYGSDPS--IIS--LQGFT----AAQMGNEAVQQILSESTP 333
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 37/262 (14%)
Query: 163 DINVENNFGK--TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH-LVRN 219
++N + G+ T +A ++L L++G +V H K GG + LH
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-----HAKDK-GGLVPLHNACSY 101
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA-----------CV 268
GH +L+L+ GA V+A D T L A +++ LL HGA V
Sbjct: 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
Query: 269 DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXT-------KGP-TNKAPLHLVV-- 318
D L E + +++Q K P +++ LH V
Sbjct: 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221
Query: 319 ---QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
+RK + + LL GANVN K+ + TPLH+A E D + +L KHGA +N +D
Sbjct: 222 LHPKRKQ----VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 376 NQGQMPLHIAVQNGYVAIPNLI 397
+ GQ LH A G++ L+
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL 299
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 89/212 (41%), Gaps = 38/212 (17%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATKNIRL 60
A VNA + T +A ++ + LL GA DP + GKS + +A T +R
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA---DPTLVNCHGKSAVDMAPTPELR- 170
Query: 61 VRLLLEY----------NVDVNAVDNL-------------GNTVLH-TVASIKTRDPTAV 96
RL E+ D+ V T LH VAS+ +
Sbjct: 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230
Query: 97 EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV-- 154
E+L ANVN KNK+ TPLH+AA + ++ VL HGA + G ALH A
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290
Query: 155 ------GILLRKGADINVENNFGKTAFQMAYE 180
+LL G+D ++ + G TA QM E
Sbjct: 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 444 KDPLYIAVEMHNLSIVEQLLK-FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
KD L A N + LL N ++SD T LHLA V I++ LL + AD+
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+AK G+ PLH A + V LL + ++ D T LH
Sbjct: 85 HAKDKGGL----VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN +D G PLH+A Q G++ I L+++GA+VNA + + TPLH+A
Sbjct: 28 DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
+ ++ + LL+HGA V+A+ + GK I+++ N + E L K
Sbjct: 88 AIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN D++ TPLH+A + + V +L+K+GADVN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
N G PLH+A G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN +++G TPLH+AA+ G+ ++V VL+ +GA +++ G LH+A
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA ++ TPLH+A + ++ + LL++GA V+A G PL++A +
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LLK A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A + G PL++A ++ +L IVE LLK+ A+VN+ D FG T LHLA +
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL + AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A D+ T L +A + GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 270 SLQ-FIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ F +PLHLA + H+ IV+
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL HGA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N + G T +A ++ + +E+ LKYG +V +N G
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN---AEDNF---GITP 83
Query: 214 LHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH V+++L+ GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N +DG + LH+AA ++ +V +LL+Y DVNA DN
Sbjct: 20 EAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
G T LH +A+I+ VE+L + A+VN ++K G T I+ GN + +L
Sbjct: 79 FGITPLH-LAAIRGH-LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA ++ ++ I+E LL AD+NA+ GI TPLH
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI----TPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + ++ LL + D++ +DK G TA S
Sbjct: 86 LAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
ADVNA +++G+T A I ++L + GA++N D F G + LH+AA + +
Sbjct: 38 ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF---GITPLHLAAIRGHLE 94
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+V +LL++ DVNA D G T SI + EIL+
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIA 53
+ ADVNA + GIT A + I ++L + GA++N D F GK+ I+
Sbjct: 69 YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF---GKTAFDIS 120
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
D +++T LH A + + V L++ G VN D+ G PLHIA G I L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A+VNA N+ TPLH A + LLE GA DA+ ++ A NL +V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
LL +KA+ N D G T LHLA + V + L+ A I
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACV-DSLQFIHSPLHLAIEKQHIAIVQXXXXXX 297
DQ +TAL A GH +IVEFLL G V D SPLH+A IV+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
G T PLH + + LL GAN + KD + T +H A
Sbjct: 97 AHVNAVNQNGCT---PLHYAASKNRHEIAVM--LLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
V +L+ + A N+ D +G PLH+A V L+ GA++ NK KTPL +
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 417 A 417
A
Sbjct: 212 A 212
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
T + + LL G VN KDD +PLHIA + + V L+ GA VN ++ G PLH
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHY 112
Query: 385 AV-QNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +N + L+ GAN +A++ Y T +H A + N+ ++ LL + A + + G
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
PL++A + + + L+ A++ ++ +T L +A
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
D + LH A G+ I L++ G VN ++ +PLHIA + LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
A V+A Q G PL+ A + I LL+ AN ++ D + T +H A N+ ++
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LL KA N + +G TPLHLA + L+ + +++K T L
Sbjct: 157 ILLFYKASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPL 278
GH V+ +L+ G V+ KD + L IA G +IV+ LL GA V+++ Q +PL
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPL 110
Query: 279 HLAIEK--QHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
H A K IA++ K + +H + N M LL++ A
Sbjct: 111 HYAASKNRHEIAVM-----LLEGGANPDAKDHYDATAMHRAAAKG--NLKMVHILLFYKA 163
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+ N++D E TPLH+A + + + LV GA + + + + + PL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLE 66
T+++ T A + T I + L + G +ND D G S LHIAA+ +V+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLV 94
Query: 67 YNVDVNAVDNLGNTVLHTVASIKTR--------------------DPTA----------- 95
VNAV+ G T LH AS K R D TA
Sbjct: 95 KGAHVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 96 -VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153
V IL +A+ NI++ EG+TPLH+A + + L+ GA +N + L VA
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 154 --VGILLRKGAD 163
+G++L++ A+
Sbjct: 214 GGLGLILKRLAE 225
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
A VNA N+ G T A ++ IA +L E GAN + D + AA N+++V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
+LL Y N D GNT LH +A + R A + L T A++ I+NKE TPL +A
Sbjct: 157 ILLFYKASTNIQDTEGNTPLH-LACDEERVEEA-KFLVTQGASIYIENKEEKTPLQVA 212
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 74 VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
D T LH S + VE L VN K+ G +PLHIAA G ++V+ L+
Sbjct: 36 TDQDSRTALHWACSAGHTE--IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 134 DHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKNFP 185
GAH N G LH A +LL GA+ + ++++ TA A N
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 186 AIE--LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ-NAVKLILEKGANVHAKDQLC 242
+ LF K N++ G LHL + + K ++ +GA+++ +++
Sbjct: 154 MVHILLFYKASTNIQDTE--------GNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205
Query: 243 KTALDIA 249
KT L +A
Sbjct: 206 KTPLQVA 212
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E++L K+ +DQ RT LH A + I+E LL +N K +G ++PLH+
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + + ++ LL ++ ++NG T LH
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLH 111
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
D +++T LH A + + V L++ G VN D+ G PLHIA G I L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A+VNA N+ TPLH A + LLE GA DA+ ++ A NL +V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
LL +KA+ N D G T LHLA + V + L+ A I
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLE 66
T+++ T A + T I + L + G +ND D G S LHIAA+ +V+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGXDEIVKALLV 94
Query: 67 YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126
VNAV+ G T LH AS K R AV +L+ AN + K+ T +H AA GN
Sbjct: 95 KGAHVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNL 152
Query: 127 KMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMA 178
KMV +L+ + A T ++ +G LH+A L+ +GA I +EN KT Q+A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
T + + LL G VN KDD +PLHIA + + V L+ GA VN ++ G PLH
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112
Query: 385 AV-QNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +N + L+ GAN +A++ Y T +H A + N+ ++ LL + A + + G
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
PL++A + + + L+ A++ ++ +T L +A
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
D + LH A G+ I L++ G VN ++ +PLHIA + LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
A V+A Q G PL+ A + I LL+ AN ++ D + T +H A N+ ++
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LL KA N + +G TPLHLA + L+ + +++K T L
Sbjct: 157 ILLFYKASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D ++ LH A + +V LL+ V VN D+ G + LH AS + V+ L
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE--IVKALLVKG 96
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN N+ G TPLH AA +++ +L++ GA+ + K+H A+H A V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
ILL A N+++ G T +A + + + + G ++
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
A VNA N+ G T A ++ IA +L E GAN + D + AA N+++V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
+LL Y N D GNT LH +A + R A + L T A++ I+NKE TPL +A
Sbjct: 157 ILLFYKASTNIQDTEGNTPLH-LACDEERVEEA-KFLVTQGASIYIENKEEKTPLQVA 212
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 93/251 (37%), Gaps = 83/251 (33%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKG 161
+++ T LH A G+ ++V L+ G K+ G++ LH+A V LL KG
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
A +N N G T A +N H
Sbjct: 97 AHVNAVNQNGCTPLHYAAS-------------------------------------KNRH 119
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLA 281
+ AV ++LE GAN AKD TA+ A G+LK+V LL + A +
Sbjct: 120 EIAV-MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN------------ 166
Query: 282 IEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
T+G T PLHL + F L+ GA++ ++
Sbjct: 167 --------------------IQDTEGNT---PLHLACDEERVEEAKF--LVTQGASIYIE 201
Query: 342 DDENKTPLHIA 352
+ E KTPL +A
Sbjct: 202 NKEEKTPLQVA 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E++L K+ +DQ RT LH A + I+E LL +N K +G ++PLH+
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + + ++ LL ++ ++NG T LH
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLH 111
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 4/152 (2%)
Query: 356 QCWDAVSLLVK---HGADVNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAK 411
+C A L K G VNV G PLH+A +G IP L++HGAN ARN
Sbjct: 61 KCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA 120
Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
PLH+A +Q + + LL+ A+ + + G PL A + +V LL+ A++N+
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
S+ G T LH AV ++V ++E LL++ A +
Sbjct: 181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-YVAI 393
G VNV + +PLH+A D + LL+KHGA+ + +PLH+A Q G + +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 394 PNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
L+ A N ++ TPL A + + LL+HGA ++A G L+ AV
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497
++ +VE LL A+V ++ RT + A QN I+E L V
Sbjct: 196 KHVFVVELLLLHGASVQVLNKRQRTAVDCAE--QNSKIMELLQV 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
+PLH+ + LL HGAN ++ + PLH+A + + V L+ A
Sbjct: 88 SPLHVAALH--GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 372 NVIDNQGQMPLHIAVQNGY---VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
N D G PL A G+ VA+ L++HGA++NA N T LH AV +K++ +
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVAL--LLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
LL HGA V + + + A + N I+E L + V S D T
Sbjct: 204 LLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQVVPSCVASLDDVAET 251
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Query: 50 LHIAATKNIRLVRLLLEYNVD-----VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA 104
L A ++ +VR LLE+ + + V H + P + K +
Sbjct: 16 LRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS 75
Query: 105 N--VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
VN+ +++G +PLH+AA G ++ +L+ HGA+ +N LH+A V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
LL A N ++ G T A + + L L++G ++ + + G L
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-----NASNNKGNTALH 190
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
V H V+L+L GA+V ++ +TA+D A ++ KI+E L +CV SL
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPSCVASL 245
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 42/197 (21%)
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHS-PLHLAIEKQHIAIV 290
G NV ++D + L +A HG ++ LL HGA + + PLHLA ++ H +V
Sbjct: 78 GVNVTSQDG--SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 291 QXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
K LL A N KD TPL
Sbjct: 136 --------------------------------------KCLLDSNAKPNKKDLSGNTPLI 157
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
A + V+LL++HGA +N +N+G LH AV +V + L+ HGA+V NK
Sbjct: 158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR 217
Query: 410 AKTPLHIAVEQKNMSAL 426
+T + A + + L
Sbjct: 218 QRTAVDCAEQNSKIMEL 234
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Query: 379 QMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
Q P Q +P G VN ++ +PLH+A + LL+HGA A
Sbjct: 58 QCPKCAPAQKRLAKVPA---SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA 114
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
R PL++A + + +V+ LL A N D G T L A + ++ LL +
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
A INA KG T LH AV + V+ LL + + V +K TA+
Sbjct: 175 GASINA----SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 23 SQTPIAKLLAER-GANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNT 80
+Q +AK+ A G N+ DG S LH+AA L+ LLL++ + A +
Sbjct: 65 AQKRLAKVPASGLGVNVTS---QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 81 VLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTE 140
LH + + V+ L + A N K+ G+TPL A G++++V +L+ HGA
Sbjct: 122 PLHL--ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 141 CKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYE 180
N++G ALH A V +LL GA + V N +TA A +
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
G V+ +Q G PL++A ++ LLK AN + + LHLA + + ++
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+CLL + A N K +SG TPL A + ++ LL + ++ + GNTALH
Sbjct: 136 KCLLDSNAKPNKKDLSG----NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYH--GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
PLH+ V + + L+ G +++ ++ +TPLH+A+ + V LLV GA
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 371 VNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHGA----NVNARNKYAKTPLHIAVEQKNMSA 425
+D GQ H+A + + L+ A ++ ARN T LH+AV +
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 426 LNYLLEHGAQVDA-RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
+ LLE GA +DA + G+ PL AVE ++LS+V+ LL+ ANVN+ G + LH A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 485 KIQNVAILECLLVNKADINAK 505
+ ++ L+ + AD + K
Sbjct: 192 GRGLLPLVRTLVRSGADSSLK 212
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLV----KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI 397
D++ TPLHIA+ AV LV + G ++++ +N Q PLH+AV +P+++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV---ITTLPSVV 62
Query: 398 R----HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA----QVDARTQLGKDPLYI 449
R GA+ A +++ +T H+A E ++ + L LL+ A ++AR G L++
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 450 AVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
AV V+ LL+ A++++ D + GR+ L AV+ ++++++ LL + A++NA+
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ--- 179
Query: 509 GIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
++ G + LH A ++ L+ D +K+ + +T L
Sbjct: 180 -MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 43/259 (16%)
Query: 44 DDGKSCLHIAATK-NI----RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEI 98
+DG + LHIA + N+ RLV L + +++ +NL T LH ++ T P+ V +
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL--AVITTLPSVVRL 64
Query: 99 LKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA----HTECKNHQGYNALHVAV 154
L T A+ ++ G T H+A + +R L+D A E +N+ G ALHVAV
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
N E ++L L+ G +++ ++K G L+
Sbjct: 125 ----------NTECQ---------------ETVQLLLERGADIDAV----DIKSGRSPLI 155
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI 274
H V N + V+L+L+ GANV+A+ +AL A G L +V L+ GA SL+
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNC 214
Query: 275 H--SPLHLAIEKQHIAIVQ 291
H +PL +A ++ I I++
Sbjct: 215 HNDTPLMVARSRRVIDILR 233
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 45/264 (17%)
Query: 239 DQLCKTALDIAVEHGHL----KIVEFLLDHGACVDSLQ-FIHSPLHLAIEKQHIAIVQXX 293
D+ T L IAV G+L ++V G +D +PLHLA+ ++V+
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 294 XXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA----NVNVKDDENKTPL 349
G T HL + +S T + LL A ++ ++ + T L
Sbjct: 66 VTAGASPMALDRHGQTAA---HLACEHRS--PTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKY 409
H+A+ ++C + V LL++ GAD++ +D K
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDI-------------------------------KS 149
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
++PL AVE ++S + LL+HGA V+A+ G L+ A L +V L++ A+
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Query: 470 NSSDQFGRTVLHLAVKIQNVAILE 493
+ + T L +A + + IL
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILR 233
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCL-HIAATKNIRLVR 62
D+ A N +G+T A+ + +LL ERGA+I+ G+S L H ++ +V+
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
LLL++ +VNA G++ LH+ AS + P ++++ A+ ++KN DTPL +A
Sbjct: 168 LLLQHGANVNAQMYSGSSALHS-ASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVA 223
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
D +++T LH A + + V L++ G VN D+ G PLHIA G I L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A VNA N+ TPLH A + LLE GA DA+ ++ A NL ++
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
LL +KA+ N D G T LHLA + V + L+ A I
Sbjct: 157 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLE 66
T+++ T A + T I + L + G +ND D G S LHIAA+ +V+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLG 94
Query: 67 YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126
VNAV+ G T LH AS K R AV +L+ AN + K+ T +H AA GN
Sbjct: 95 KGAQVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNL 152
Query: 127 KMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMA 178
KM+ +L+ + A T ++ +G LH+A +L+ +GA I +EN KT Q+A
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACV-DSLQFIHSPLHLAIEKQHIAIVQXXXXXX 297
DQ +TAL A GH +IVEFLL G V D SPLH+A IV+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
G T PLH + + LL GAN + KD T +H A
Sbjct: 97 AQVNAVNQNGCT---PLHYAASKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
+ +L+ + A N+ D +G PLH+A V L+ GA++ NK KTPL +
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211
Query: 417 A 417
A
Sbjct: 212 A 212
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
T + + LL G VN KDD +PLHIA + + V L+ GA VN ++ G PLH
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY 112
Query: 385 AV-QNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +N + L+ GAN +A++ Y T +H A + N+ ++ LL + A + + G
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 172
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
PL++A + + + L+ A++ ++ +T L +A
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
D + LH A G+ I L++ G VN ++ +PLHIA + LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
AQV+A Q G PL+ A + I LL+ AN ++ D + T +H A N+ ++
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LL KA N + +G TPLHLA + L+ + +++K T L
Sbjct: 157 ILLYYKASTNIQDT----EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 210
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D ++ LH A + +V LL+ V VN D+ G + LH AS RD V+ L
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGRDEI-VKALLGKG 96
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG-------- 155
A VN N+ G TPLH AA +++ +L++ GA+ + K+H A+H A
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
ILL A N+++ G T +A + + +L + G ++
Sbjct: 157 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPL 278
GH V+ +L+ G V+ KD + L IA G +IV+ LL GA V+++ Q +PL
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 110
Query: 279 HLAIEK--QHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
H A K IA++ K +H + N M LLY+ A
Sbjct: 111 HYAASKNRHEIAVM-----LLEGGANPDAKDHYEATAMHRAAAKG--NLKMIHILLYYKA 163
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+ N++D E TPLH+A + + + LLV GA + + + + + PL +A
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATK-NIR 59
A VNA N+ G T A ++ IA +L E GAN P D + +H AA K N++
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNLK 153
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
++ +LL Y N D GNT LH +A + R A ++L + A++ I+NKE TPL +
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPLH-LACDEERVEEA-KLLVSQGASIYIENKEEKTPLQV 211
Query: 120 A 120
A
Sbjct: 212 A 212
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 87/253 (34%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKG 161
+++ T LH A G+ ++V L+ G K+ G++ LH+A V LL KG
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
A +N N G T A +N H
Sbjct: 97 AQVNAVNQNGCTPLHYAAS-------------------------------------KNRH 119
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLH 279
+ AV ++LE GAN AKD TA+ A G+LK++ LL + A + +Q +PLH
Sbjct: 120 EIAV-MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLH 177
Query: 280 LAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
LA +++ + K L+ GA++
Sbjct: 178 LACDEERV--------------------------------------EEAKLLVSQGASIY 199
Query: 340 VKDDENKTPLHIA 352
+++ E KTPL +A
Sbjct: 200 IENKEEKTPLQVA 212
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E +L K+ +DQ RT LH A + I+E LL +N K +G ++PLH+
Sbjct: 24 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 79
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + + ++ LL ++ ++NG T LH
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLH 111
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PNLIRHG 400
D +++T LH A + + V L++ G VN D+ G PLHIA G I L+ G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A VNA N+ TPLH A + LLE GA DA+ ++ A NL ++
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
LL +KA+ N D G T LHLA + V + L+ A I
Sbjct: 158 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLE 66
T+++ T A + T I + L + G +ND D G S LHIAA+ +V+ LL
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLG 95
Query: 67 YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126
VNAV+ G T LH AS K R AV +L+ AN + K+ T +H AA GN
Sbjct: 96 KGAQVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNL 153
Query: 127 KMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMA 178
KM+ +L+ + A T ++ +G LH+A +L+ +GA I +EN KT Q+A
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACV-DSLQFIHSPLHLAIEKQHIAIVQXXXXXX 297
DQ +TAL A GH +IVEFLL G V D SPLH+A IV+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
G T PLH + + LL GAN + KD T +H A
Sbjct: 98 AQVNAVNQNGCT---PLHYAASKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
+ +L+ + A N+ D +G PLH+A V L+ GA++ NK KTPL +
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212
Query: 417 A 417
A
Sbjct: 213 A 213
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
T + + LL G VN KDD +PLHIA + + V L+ GA VN ++ G PLH
Sbjct: 54 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY 113
Query: 385 AV-QNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A +N + L+ GAN +A++ Y T +H A + N+ ++ LL + A + + G
Sbjct: 114 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 173
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
PL++A + + + L+ A++ ++ +T L +A
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 5/178 (2%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
D + LH A G+ I L++ G VN ++ +PLHIA + LL G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
AQV+A Q G PL+ A + I LL+ AN ++ D + T +H A N+ ++
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
LL KA N + +G TPLHLA + L+ + +++K T L
Sbjct: 158 ILLYYKASTNIQDT----EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 211
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D ++ LH A + +V LL+ V VN D+ G + LH AS RD V+ L
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGRDEI-VKALLGKG 97
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG-------- 155
A VN N+ G TPLH AA +++ +L++ GA+ + K+H A+H A
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
ILL A N+++ G T +A + + +L + G ++
Sbjct: 158 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPL 278
GH V+ +L+ G V+ KD + L IA G +IV+ LL GA V+++ Q +PL
Sbjct: 52 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 111
Query: 279 HLAIEK--QHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
H A K IA++ K +H + N M LLY+ A
Sbjct: 112 HYAASKNRHEIAVM-----LLEGGANPDAKDHYEATAMHRAAAKG--NLKMIHILLYYKA 164
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+ N++D E TPLH+A + + + LLV GA + + + + + PL +A
Sbjct: 165 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATK-NIR 59
A VNA N+ G T A ++ IA +L E GAN P D + +H AA K N++
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNLK 154
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
++ +LL Y N D GNT LH +A + R A ++L + A++ I+NKE TPL +
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPLH-LACDEERVEEA-KLLVSQGASIYIENKEEKTPLQV 212
Query: 120 A 120
A
Sbjct: 213 A 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 87/253 (34%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKG 161
+++ T LH A G+ ++V L+ G K+ G++ LH+A V LL KG
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
A +N N G T A +N H
Sbjct: 98 AQVNAVNQNGCTPLHYAAS-------------------------------------KNRH 120
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLH 279
+ AV ++LE GAN AKD TA+ A G+LK++ LL + A + +Q +PLH
Sbjct: 121 EIAV-MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLH 178
Query: 280 LAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
LA +++ + K L+ GA++
Sbjct: 179 LACDEERV--------------------------------------EEAKLLVSQGASIY 200
Query: 340 VKDDENKTPLHIA 352
+++ E KTPL +A
Sbjct: 201 IENKEEKTPLQVA 213
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E +L K+ +DQ RT LH A + I+E LL +N K +G ++PLH+
Sbjct: 25 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----WSPLHI 80
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + + ++ LL ++ ++NG T LH
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLH 112
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 127/314 (40%), Gaps = 63/314 (20%)
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGD-TPLHIAARTGNYKMVRVLIDHGAHTECKN 143
+ +++ D V+ L ANVN + +EG TPLH A + +V +L+ HGA +
Sbjct: 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69
Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
G +A + + L KGAD+N + +G TAF A A++ K G
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 196 NV----EQCVCHENVKHGGQL-LLHLVRNGHQNAVKLIL-EKGANVHAKDQLCKTAL--- 246
NV + E ++ GG L+ GH +K++L E GA+V+A D + + AL
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189
Query: 247 -----DIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXX 301
D VE I LLDHGA V+
Sbjct: 190 LLSSDDSDVE----AITHLLLDHGADVN-------------------------------- 213
Query: 302 XXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+G K PL L V++K + L +N D + KT L +A+E +
Sbjct: 214 ---VRGERGKTPLILAVEKKHLGLVQ-RLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 362 SLLVKHGADVNVID 375
LL K GA + D
Sbjct: 270 ELLCKRGASTDCGD 283
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 47/250 (18%)
Query: 315 HLVVQR-KSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADVN 372
HL+++ ++ + + + LL GANVN +++E TPLH A++ D V LL++HGAD
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 373 VIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ G P +A G V + L + GA+VN + Y T A + AL +L +
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 432 HGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVL 480
GA V+ R + +D L A E ++ +++ LL + A+VN+ D GR
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN-- 184
Query: 481 HLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540
A++ LL + +S+ EA+ + LLD+ D++
Sbjct: 185 ---------ALIHALLSSD----------------------DSDVEAITHLLLDHGADVN 213
Query: 541 VKDKNGNTAL 550
V+ + G T L
Sbjct: 214 VRGERGKTPL 223
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 57/303 (18%)
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCK-TALDIAVEHGHLKIVEFLLDHGACVDS 270
LL+ V+N + V+ +LE GANV+ +++ T L AV+ IVE LL HGA
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA---- 63
Query: 271 LQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKT 330
P+ + K++ G T P L S + K
Sbjct: 64 -----DPV---LRKKN--------------------GAT---PFLLAAIAGS--VKLLKL 90
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV----------IDNQGQM 380
L GA+VN D T A A+ L K GA+VN+ + G
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 381 PLHIAVQNGYVAIPNLI--RHGANVNARNKYAKTPL---HIAVEQKNMSALNYLL-EHGA 434
L A + G+V + ++ GA+VNA + + L ++ + ++ A+ +LL +HGA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAV--KIQNVAI 491
V+ R + GK PL +AVE +L +V++LL+ + +N +D G+T L LAV K++ +A
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Query: 492 LEC 494
L C
Sbjct: 271 LLC 273
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 37/209 (17%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN---------DPFPDDGKSCLHIA 53
ADVN + G T F +A V + K L +RGAN+N + G + L A
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 54 ATKN-IRLVRLLL-EYNVDVNAVDNLG-NTVLHTVASIKTRDPTAVE-ILKTNRANVNIK 109
A K + ++++LL E DVNA DN+G N ++H + S D A+ +L + A+VN++
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169
+ G TPL +A + +V+ L++ H E IN ++
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQ-EHIE-----------------------INDTDS 251
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVE 198
GKTA +A E+K EL K G + +
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 19/262 (7%)
Query: 157 LLRKGADINV-ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
LL GA++N E G T A +M +EL L++G + V + K+G L
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRK--KNGATPFLL 78
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH 275
G +KL L KGA+V+ D TA A +G +K ++FL GA V+ +
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138
Query: 276 -----------SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWN 324
+ L A EK H+ +++ N L+ S
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS-LLVKHGADVNVIDNQGQMPLH 383
+ LL HGA+VNV+ + KTPL +A+E + V LL + ++N D+ G+ L
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 384 IAVQNGYVAIPNLI-RHGANVN 404
+AV+ I L+ + GA+ +
Sbjct: 259 LAVELKLKKIAELLCKRGASTD 280
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN +D TPLH+A + + V +L+K+GADVN ID
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
G+ PLH+ G++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA +K TPLH+A ++ + LL++GA V+A +G+ PL++ +
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LLK A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A N ++ I L+++GA+VNA + +TPLH+
Sbjct: 28 DEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LL+HGA V+A+ + GK I+++ N + E L K
Sbjct: 88 AMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN ++K G TPLH+AA + ++V VL+ +GA + G LH+
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+A+D++ T L +A + HL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ I +PLHL H+ IV+
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL HGA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N E+ G T +A + +E+ LK G +V + G+
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA------IDAIGETP 83
Query: 214 LHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHLV GH V+++L+ GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 84 LHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A ++G PL++A +L IVE LLK A+VN+ D G T LHL +
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL + AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLKHGADVNAQ----DKFGKTAFDISIDNGNE 126
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA ++ I+E LL N AD+NA I I G TPLH
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA--IDAI--GETPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
L + ++ LL + D++ +DK G TA S
Sbjct: 86 LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLV 61
ADVNA +K G+T A ++ I ++L + GA++N G++ LH+ A ++ +V
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL++ DVNA D G T SI + EIL+
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GA D G PLH+A Q G+ + L+R G + +AR K +TPLH+A
Sbjct: 16 DEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA 74
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ + + + LL+HGA V+A+ L L+ A E ++ +VE L+K+ A+V++ +F +
Sbjct: 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK 134
Query: 478 TVLHLAVKIQNVAILECL 495
T +++ N + E L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
+PLHL Q ++TT + LL G + + + ++TPLH+A + V +L+KHGADV
Sbjct: 36 SPLHLAAQYGHFSTT--EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
N D LH A ++ + + LI++GA+V+ ++K+ KT I+++ N
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 40/181 (22%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA D L + L +A ++GH E LL G D
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ + +PLH+A + H IV+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVE------------------------------------- 84
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
LL HGA+VN KD T LH A E + V LL+K+GADV+ + I++ N
Sbjct: 85 -VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143
Query: 389 G 389
G
Sbjct: 144 G 144
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 46/157 (29%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G +PLH+AA+ G++ VL+ G + + LH+A V +LL+ GAD+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N ++ TA A E + HQ
Sbjct: 94 NAKDMLKMTALHWATE--------------------------------------HNHQEV 115
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
V+L+++ GA+VH + + CKTA DI++++G+ + E L
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
+PLH+A + + S LL G DART++ + PL++A + +IVE LLK A+VN+
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
D T LH A + + ++E L+ AD++ +
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D GK L A VR+L+ D LG + LH A T E+L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTT--EVLLRAG 57
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
+ + + K TPLH+AA G+ +V VL+ HGA K+ ALH A V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+L++ GAD++ ++ F KTAF ++ + N E+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
LG PL++A + + S E LL+ + ++ + RT LH+A + I+E LL + AD
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
+NAK + + T LH A E N++ V+ L+ Y D+ + K TA S
Sbjct: 93 VNAKDMLKM----TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GA + G + +A + +F E+ L+ GV+ + +
Sbjct: 18 VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTP------ 70
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
LH+ + GH N V+++L+ GA+V+AKD L TAL A EH H ++VE L+ +GA V +
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 272 QFIHSPLHLAIE 283
+F + ++I+
Sbjct: 131 KFCKTAFDISID 142
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
++D G + LHLA + + + E LL +A ++ + + TPLH+A + ++
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLL--RAGVSRDARTKV--DRTPLHMAASEGHANIVE 84
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
LL + D++ KD TALH
Sbjct: 85 VLLKHGADVNAKDMLKMTALH 105
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 127/314 (40%), Gaps = 63/314 (20%)
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGD-TPLHIAARTGNYKMVRVLIDHGAHTECKN 143
+ +++ D V+ L ANVN + +EG TPLH A + +V +L+ HGA +
Sbjct: 30 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 89
Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
G +A + + L KGAD+N + +G TAF A A++ K G
Sbjct: 90 KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Query: 196 NV----EQCVCHENVKHGGQL-LLHLVRNGHQNAVKLIL-EKGANVHAKDQLCKTAL--- 246
NV + E ++ GG L+ GH +K++L E GA+V+A D + + AL
Sbjct: 150 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209
Query: 247 -----DIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXX 301
D VE I LLDHGA V+
Sbjct: 210 LLSSDDSDVE----AITHLLLDHGADVN-------------------------------- 233
Query: 302 XXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+G K PL L V++K + L +N D + KT L +A+E +
Sbjct: 234 ---VRGERGKTPLILAVEKKHLGLVQ-RLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 362 SLLVKHGADVNVID 375
LL K GA + D
Sbjct: 290 ELLCKRGASTDCGD 303
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 47/244 (19%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN---------DPFPDDGKSCLHIA 53
ADVN + G T F +A V + K L +RGAN+N + G + L A
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 54 ATKN-IRLVRLLL-EYNVDVNAVDNLG-NTVLHTVASIKTRDPTAVE-ILKTNRANVNIK 109
A K + ++++LL E DVNA DN+G N ++H + S D A+ +L + A+VN++
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169
+ G TPL +A + +V+ L++ H E IN ++
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRLLEQ-EHIE-----------------------INDTDS 271
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
GKTA +A E+K EL K G + + C G L++ RN + VK++L
Sbjct: 272 DGKTALLLAVELKLKKIAELLCKRGASTD-C---------GDLVMTARRNYDHSLVKVLL 321
Query: 230 EKGA 233
GA
Sbjct: 322 SHGA 325
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 54/266 (20%)
Query: 306 KGPTNKAPL-------HLVVQR-KSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQ 356
+GPT+ + HL+++ ++ + + + LL GANVN +++E TPLH A++
Sbjct: 11 EGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS 70
Query: 357 CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL-IRHGANVNARNKYAKTPLH 415
D V LL++HGAD + G P +A G V + L + GA+VN + Y T
Sbjct: 71 REDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 130
Query: 416 IAVEQKNMSALNYLLEHGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-K 464
A + AL +L + GA V+ R + +D L A E ++ +++ LL +
Sbjct: 131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
A+VN+ D GR A++ LL + +S+
Sbjct: 191 MGADVNACDNMGRN-----------ALIHALLSSD----------------------DSD 217
Query: 525 NEAVINKLLDYNPDLDVKDKNGNTAL 550
EA+ + LLD+ D++V+ + G T L
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPL 243
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 139/303 (45%), Gaps = 57/303 (18%)
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCK-TALDIAVEHGHLKIVEFLLDHGACVDS 270
LL+ V+N + V+ +LE GANV+ +++ T L AV+ IVE LL HGA
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA---- 83
Query: 271 LQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKT 330
P+ + K++ A ++ + + + K
Sbjct: 84 -----DPV---LRKKNGATP-------------------------FILAAIAGSVKLLKL 110
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV----------IDNQGQM 380
L GA+VN D T A A+ L K GA+VN+ + G
Sbjct: 111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 381 PLHIAVQNGYVAIPNLI--RHGANVNARNKYAKTPL---HIAVEQKNMSALNYLL-EHGA 434
L A + G+V + ++ GA+VNA + + L ++ + ++ A+ +LL +HGA
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 230
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAV--KIQNVAI 491
V+ R + GK PL +AVE +L +V++LL+ + +N +D G+T L LAV K++ +A
Sbjct: 231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 290
Query: 492 LEC 494
L C
Sbjct: 291 LLC 293
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 15/232 (6%)
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
S +T LL GA++N + + T LH A D V LV++GA++N DN+G +P
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 382 LHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL-NYLLEHGAQVD-A 438
LH A GY+ I LI GA+V A N TPL IA E+ L N + G ++ A
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
R + + L A + N + + K+ G T LH+A +L+ L+
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKS--------GGTALHVAAAKGYTEVLKLLIQA 221
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ D+N K + G+TPLH A E L++ D++ +K G TA
Sbjct: 222 RYDVNIK----DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
AD+N N +G+T QA + + K L E GANIN P ++G LH AA+ + +
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIA 122
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKT---------RDPTAVEILKTNRANVNIKN-- 110
L+ V AV++ G+T L R +E + + +++
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182
Query: 111 --------------KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV-- 154
K G T LH+AA G +++++LI K++ G+ LH A
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242
Query: 155 ------GILLRKGADINVENNFGKTAFQMAYE 180
IL+ D+ N G+TAF +A E
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 96/246 (39%), Gaps = 48/246 (19%)
Query: 44 DDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
DDG L ++ + V LLE D+N + G T LH D V+ L N
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVD--MVKFLVENG 96
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL----- 158
AN+N + EG PLH AA G + LI GAH N +G L +A +
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 159 ----RKGADINVEN--------------------------NFGKTAFQMAYEMKNFPAIE 188
R+G DI G TA +A ++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 189 LFL--KYGVNVEQCVCHENVKHGGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTA 245
L + +Y VN++ + G LH + G + A ++++E ++ A +++ +TA
Sbjct: 217 LLIQARYDVNIKD--------YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 246 LDIAVE 251
D+A E
Sbjct: 269 FDVADE 274
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 13/192 (6%)
Query: 364 LVKHGADVNVIDNQGQMPLHIA-VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
L++ GAD+N + G LH A + + + L+ +GAN+N + PLH A
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+ YL+ GA V A G PL IA E +++ N ++ G +
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ---------NEVNRQGVDIEAA 169
Query: 483 AVKIQNVAILECL-LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
+ + + + + +N IN + G T LH+A V+ L+ D+++
Sbjct: 170 RKEEERIMLRDARQWLNSGHIND--VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 542 KDKNGNTALHPS 553
KD +G T LH +
Sbjct: 228 KDYDGWTPLHAA 239
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 28/188 (14%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
N M K L+ +GAN+N D+E PLH A D L+ GA V ++++G PL
Sbjct: 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Query: 384 IAVQNGYVAIPN--LIRHGANVNARNK-----------------------YAK---TPLH 415
IA + + + R G ++ A K +AK T LH
Sbjct: 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH 204
Query: 416 IAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF 475
+A + L L++ V+ + G PL+ A L++ ++ + ++
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 476 GRTVLHLA 483
G+T +A
Sbjct: 265 GQTAFDVA 272
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 107/281 (38%), Gaps = 63/281 (22%)
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LL +GADIN N G TA A C+ +NV
Sbjct: 59 LLERGADINYANVDGLTALHQA---------------------CI-DDNV---------- 86
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-H 275
+ VK ++E GAN++ D L A G+L I E+L+ GA V ++
Sbjct: 87 ------DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Query: 276 SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
+PL +A E+ ++Q N+ + + RK M +
Sbjct: 141 TPLDIAEEEAMEELLQ---------------NEVNRQGVDIEAARKEEERIMLRDARQWL 185
Query: 336 ANVNVKD----DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-Y 390
+ ++ D T LH+A + + LL++ DVN+ D G PLH A G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
A L+ + ++ A NK +T +A E L YL E
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEE 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 20/260 (7%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV- 268
G + L +G V +LE+GA+++ + TAL A ++ +V+FL+++GA +
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 269 --DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
D+ +I PLH A ++ I + ++G T PL + +
Sbjct: 101 QPDNEGWI--PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT---PLDIAEEEAM-EEL 154
Query: 327 MFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+ + G ++ + +E + L +++ W L H DV G LH+A
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLR---DARQW----LNSGHINDVRHA-KSGGTALHVA 206
Query: 386 VQNGYVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGK 444
GY + L I+ +VN ++ TPLH A A L+E+ ++A ++G+
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 445 DPLYIAVEMHNLSIVEQLLK 464
+A E L +E+L K
Sbjct: 267 TAFDVADE-DILGYLEELQK 285
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI-RHGANVN 404
+TPLH+A + + V LL++ GADVN D G+ PLH+A +NG++ + L+ GA+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
A++K +TPLH+A ++ + LLE GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+ PLHL ++ + + K LL GA+VN KD +TPLH+A + + V LL++ GAD
Sbjct: 3 RTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPNLI 397
VN D G+ PLH+A +NG++ + L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 378 GQMPLHIAVQNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + LLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467
+A+ + G+ PL++A +L +V+ LL+ A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
+TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+ A+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLL 496
N+ D+ GRT LHLA + ++ +++ LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
+G++ LH+AA + +V+LLLE DVNA D G T LH A + V++L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--RNGHLEVVKLLLEAG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
A+VN K+K G TPLH+AAR G+ ++V++L++ GA+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 210 GQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
G+ LHL RNGH VKL+LE GA+V+AKD+ +T L +A +GHL++V+ LL+ GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQ 291
++ + +PLHLA H+ +V+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVK 85
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 63/154 (40%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK 172
G TPLH+AAR G+ ++V+ +LL GAD+N ++ G+
Sbjct: 2 GRTPLHLAARNGHLEVVK-------------------------LLLEAGADVNAKDKNGR 36
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKG 232
T +A RNGH VKL+LE G
Sbjct: 37 TPLHLA--------------------------------------ARNGHLEVVKLLLEAG 58
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
A+V+AKD+ +T L +A +GHL++V+ LL+ GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
NAK + G TPLHLA + + V+ LL+
Sbjct: 62 NAKDKN----GRTPLHLAARNGHLEVVKLLLE 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
GRT LHLA + ++ +++ LL AD+NAK +G TPLHLA + + V+ LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG----RTPLHLAARNGHLEVVKLLLEA 57
Query: 536 NPDLDVKDKNGNTALH 551
D++ KDKNG T LH
Sbjct: 58 GADVNAKDKNGRTPLH 73
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G T LH A + V++L A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2 GRTPLHLAA--RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGA 162
K+ G LH+A V +LL GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 39/128 (30%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQXXXXXXXXXX 301
+T L +A +GHL++V+ LL+ GA V++ + +PLHLA H+ +V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV----------- 51
Query: 302 XXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
K LL GA+VN KD +TPLH+A + + V
Sbjct: 52 ---------------------------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 362 SLLVKHGA 369
LL++ GA
Sbjct: 85 KLLLEAGA 92
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA +K G T A + + KLL E GA++N +G++ LH+AA + +V
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 84
Query: 62 RLLLE 66
+LLLE
Sbjct: 85 KLLLE 89
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L+ +GA+VN KD+ TPL++A + V +L+K+GADVN +D G PLH+A
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
G++ I L++HGA+VNA++K+ KT I++ N
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 64/100 (64%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA+++Y TPL++A ++ + LL++GA V+A +G PL++A + +
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L I E LLK A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PL++A +G++ I L+++GA+VNA + TPLH+A
Sbjct: 28 DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ LL+HGA V+A+ + GK I++ N + E L K
Sbjct: 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+AKD+ T L +A HGHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
++ I +PLHLA H+ I +
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL HGA+VN +D KT I+I + D +L K
Sbjct: 98 -VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
V IL N A+VN K++ G TPL++A G+ ++V VL+ +GA + G+ LH+A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 156 I--------LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
I LL+ GAD+N ++ FGKTAF ++ N E+ K
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A+ + G PLY+A +L IVE LLK A+VN+ D G T LHLA I +
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I E LL + AD+NA+ G T +++ + NE
Sbjct: 93 LEIAEVLLKHGADVNAQ----DKFGKTAFDISIGNGNE 126
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D++G T L+LA ++ I+E LL N AD+NA + I G+TPLH
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA--VDAI--GFTPLH 85
Query: 519 LAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
LA + + LL + D++ +DK G TA S
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V IL+ GAD+N ++ +G T +A + +E+ LK G +V V G
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA------VDAIGFTP 83
Query: 214 LHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL GH +++L+ GA+V+A+D+ KTA DI++ +G+ + E L
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLV 61
ADVNA ++ G+T A I ++L + GA++N G + LH+AA ++ +
Sbjct: 38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIA 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL++ DVNA D G T SI + EIL+
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDI--SIGNGNEDLAEILQ 133
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 7/193 (3%)
Query: 354 ESQCWDAVSLLVKHGADVN-VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
E +S L+ GA++N +D G+ LH+A + L+ GA+ N+++ +
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 412 TPLHIAVEQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
TPLH AV M LL + A ++AR G PL +A + +VE L+ A++N
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
++D G+T LH A + N + LL++ A+ +A+ K TPL LA +
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD----KDETPLFLAAREGSYEASK 201
Query: 531 KLLDYNPDLDVKD 543
LLD + ++ D
Sbjct: 202 ALLDNFANREITD 214
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 105/245 (42%), Gaps = 35/245 (14%)
Query: 22 SSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRL-LLEYNVDVNAVDNLGNT 80
S+ I+ LLA+ GA +N G++ LH+AA LL+ D N+ DN G T
Sbjct: 28 STAQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 86
Query: 81 VLHTVASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT 139
LH A++ +IL NRA N+N + +G TPL +AAR MV LI
Sbjct: 87 PLH--AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI------ 138
Query: 140 ECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQ 199
ADIN +N GKTA A + N A+ + L + N +
Sbjct: 139 -------------------TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA 179
Query: 200 CVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
++ K L L R G A K +L+ AN D + + D+A E H IV
Sbjct: 180 ----QDDKDETPLFL-AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR 234
Query: 260 FLLDH 264
L +H
Sbjct: 235 LLDEH 239
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATKNIR-L 60
AD N+ + G T A+ + + + LL R N+N D G + L +AA I +
Sbjct: 75 ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD-GTTPLILAARLAIEGM 133
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
V L+ + D+NA DN G T LH A++ + AV IL + AN + ++ + +TPL +A
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTE--AVNILLMHHANRDAQDDKDETPLFLA 191
Query: 121 ARTGNYKMVRVLIDHGAHTECKNH 144
AR G+Y+ + L+D+ A+ E +H
Sbjct: 192 AREGSYEASKALLDNFANREITDH 215
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 393 IPNLIRHGANVNAR-NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAV 451
I +L+ GA +NA +K +T LH+A A LL+ GA +++ G+ PL+ AV
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 452 EMHNLSIVEQLLKFKA-NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
+ + + LL+ +A N+N+ G T L LA ++ ++E L+ ADINA SG
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG- 151
Query: 511 WKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
T LH A NN +N LL ++ + D +D T L
Sbjct: 152 ---KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 316 LVVQRKSWNTTMFKT-------------------LLYHGANVNVKDDENKTPLHIAIESQ 356
L+ Q N TM KT LL GA+ N +D+ +TPLH A+ +
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
Query: 357 CWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPL 414
+L+++ A ++N + G PL +A + + +LI A++NA + KT L
Sbjct: 96 AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 155
Query: 415 HIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ 474
H A N A+N LL H A DA+ + PL++A + + LL AN +D
Sbjct: 156 HWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH 215
Query: 475 FGR 477
R
Sbjct: 216 MDR 218
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 419 EQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
E ++ LL GA+++A + G+ L++A ++LL A+ NS D GR
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 478 TVLHLAVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
T LH AV + + + LL N+A ++NA++ G TPL LA E ++ L+ +
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARM----HDGTTPLILAARLAIEGMVEDLITAD 141
Query: 537 PDLDVKDKNGNTALH 551
D++ D +G TALH
Sbjct: 142 ADINAADNSGKTALH 156
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV--DSLQFIHSPLHLAIEKQ 285
+L+ GA+ +++D +T L AV + + + LL + A + +PL LA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 286 HIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
+V+ G K LH NT LL H AN + +DD++
Sbjct: 130 IEGMVEDLITADADINAADNSG---KTALHWAAAVN--NTEAVNILLMHHANRDAQDDKD 184
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
+TPL +A ++A L+ + A+ + D+ ++P +A +
Sbjct: 185 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 226
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
L+ G VN+I PLH A G+++ + L++HGA VN TPL A +
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+N LL+HGA V + L P++ A ++ V L+ + N++ T L+L
Sbjct: 138 WDCVNLLLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLAVESNNEAVINKLLDYNPDLDV 541
A + Q A ++ LL + AD+N KG +PLH V + +E + L+D+ D
Sbjct: 197 ACENQQRACVKKLLESGADVNQG------KGQDSPLHAVVRTASEELACLLMDFGADTQA 250
Query: 542 KDKNG 546
K+ G
Sbjct: 251 KNAEG 255
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
+ L+ G VN+ ++ +PLH A V +L+KHGA VN + PL A
Sbjct: 75 LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134
Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
+G N L++HGA+V + A +P+H A + ++ +N L+ +G +D + P
Sbjct: 135 SGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 193
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN-KADINAK 505
LY+A E + V++LL+ A+VN + + LH V+ + L CLL++ AD AK
Sbjct: 194 LYLACENQQRACVKKLLESGADVNQG-KGQDSPLHAVVRTASEE-LACLLMDFGADTQAK 251
Query: 506 IISG 509
G
Sbjct: 252 NAEG 255
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 381 PLHIAVQNGY-VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
P+H A +G+ +++ NLI G VN +PLH A ++S + LL+HGAQV+
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
T PL+ A + V LL+ A+V + H A + +V + L+
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI-HEAARRGHVECVNSLIAYG 180
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+I+ KI TPL+LA E+ A + KLL+ D++ + K ++ LH
Sbjct: 181 GNIDHKIS----HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLH 227
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 41/219 (18%)
Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPL 278
GH + VK++L+ GA V+ T L A G V LL HGA V + SP+
Sbjct: 102 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161
Query: 279 HLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANV 338
H A + H+ V +L+ +G N+
Sbjct: 162 HEAARRGHVECV--------------------------------------NSLIAYGGNI 183
Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
+ K TPL++A E+Q V L++ GADVN Q PLH V+ + L+
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLM 242
Query: 399 -HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
GA+ A+N K P+ + + ++ L +L GA +
Sbjct: 243 DFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
A VN + T A VS LL + GA++ D S +H AA + + V
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECV 173
Query: 62 RLLLEYNVDVN-AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
L+ Y +++ + +LG T L+ + R V+ L + A+VN + K D+PLH
Sbjct: 174 NSLIAYGGNIDHKISHLG-TPLYLACENQQR--ACVKKLLESGADVN-QGKGQDSPLHAV 229
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQG 146
RT + ++ +L+D GA T+ KN +G
Sbjct: 230 VRTASEELACLLMDFGADTQAKNAEG 255
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VNI + +PLH A G+ V++L+ HGA + L A V +L
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
L+ GA + E++ + A + + + YG N++ + H G L
Sbjct: 145 LQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDH-----KISHLGTPLYLAC 198
Query: 218 RNGHQNAVKLILEKGANV-HAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
N + VK +LE GA+V K Q + L V ++ L+D GA
Sbjct: 199 ENQQRACVKKLLESGADVNQGKGQ--DSPLHAVVRTASEELACLLMDFGA 246
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 94 TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN------HQGY 147
+ V+IL + A VN + TPL A +G++ V +L+ HGA + ++ H+
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165
Query: 148 NALHV-AVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
HV V L+ G +I+ + + T +A E + ++ L+ G +V Q ++
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H +VR + L+++ GA+ AK+ K +++ L + FL GA
Sbjct: 226 LHA------VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGA 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 14/177 (7%)
Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINV 166
+P+H AA G+ +R LI G + LH A V ILL+ GA +N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
T A ++ + L L++G +V+ + H R GH V
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIH------EAARRGHVECVN 174
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIE 283
++ G N+ K T L +A E+ V+ LL+ GA V+ + SPLH +
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVR 231
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
L+ G VN+I PLH A G+++ + L++HGA VN TPL A +
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+N LL+HGA V + L P++ A ++ V L+ + N++ T L+L
Sbjct: 82 WDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLAVESNNEAVINKLLDYNPDLDV 541
A + Q A ++ LL + AD+N KG +PLH + +E + L+D+ D
Sbjct: 141 ACENQQRACVKKLLESGADVNQG------KGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 542 KDKNG 546
K+ G
Sbjct: 195 KNAEG 199
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
+ L+ G VN+ ++ +PLH A V +L+KHGA VN + PL A
Sbjct: 19 LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 78
Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
+G N L++HGA+V + A +P+H A + ++ +N L+ +G +D + P
Sbjct: 79 SGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 137
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN-KADINAK 505
LY+A E + V++LL+ A+VN + + LH AV L CLL++ AD AK
Sbjct: 138 LYLACENQQRACVKKLLESGADVNQG-KGQDSPLH-AVARTASEELACLLMDFGADTQAK 195
Query: 506 IISG 509
G
Sbjct: 196 NAEG 199
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 381 PLHIAVQNGY-VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
P+H A +G+ +++ NLI G VN +PLH A ++S + LL+HGAQV+
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
T PL+ A + V LL+ A+V + H A + +V + L+
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI-HEAARRGHVECVNSLIAYG 124
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+I+ KI TPL+LA E+ A + KLL+ D++ + K ++ LH
Sbjct: 125 GNIDHKIS----HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLH 171
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 42/210 (20%)
Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPL 278
GH + VK++L+ GA V+ T L A G V LL HGA V + SP+
Sbjct: 46 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 105
Query: 279 HLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANV 338
H A + H+ V +L+ +G N+
Sbjct: 106 HEAARRGHVECV--------------------------------------NSLIAYGGNI 127
Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQ-MPLHIAVQNGYVAIPNLI 397
+ K TPL++A E+Q V L++ GADVN +GQ PLH + + L+
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLL 185
Query: 398 R-HGANVNARNKYAKTPLHIAVEQKNMSAL 426
GA+ A+N K P+ + + ++ L
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPESPLAQL 215
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
A VN + T A VS LL + GA++ D S +H AA + ++ V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECV 117
Query: 62 RLLLEYNVDVN-AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
L+ Y +++ + +LG T L+ + R V+ L + A+VN + K D+PLH
Sbjct: 118 NSLIAYGGNIDHKISHLG-TPLYLACENQQR--ACVKKLLESGADVN-QGKGQDSPLHAV 173
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQG 146
ART + ++ +L+D GA T+ KN +G
Sbjct: 174 ARTASEELACLLMDFGADTQAKNAEG 199
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VNI + +PLH A G+ V++L+ HGA + L A V +L
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
L+ GA + E++ + A + + + YG N++ + H G L
Sbjct: 89 LQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDH-----KISHLGTPLYLAC 142
Query: 218 RNGHQNAVKLILEKGANV-HAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
N + VK +LE GA+V K Q + L ++ L+D GA
Sbjct: 143 ENQQRACVKKLLESGADVNQGKGQ--DSPLHAVARTASEELACLLMDFGA 190
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 94 TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN------HQGY 147
+ V+IL + A VN + TPL A +G++ V +L+ HGA + ++ H+
Sbjct: 50 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 109
Query: 148 NALHV-AVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
HV V L+ G +I+ + + T +A E + ++ L+ G +V Q ++
Sbjct: 110 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 169
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
H + R + L+++ GA+ AK+ K +++
Sbjct: 170 LHA------VARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINV 166
+P+H AA G+ +R LI G + LH A V ILL+ GA +N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
T A ++ + L L++G +V+ + H R GH V
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEA------ARRGHVECVN 118
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLH 279
++ G N+ K T L +A E+ V+ LL+ GA V+ + SPLH
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLH 171
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L +GADVN D G PLH+A G++ I L+++GA+VNA +TPLH+A
Sbjct: 28 DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
++ + LL+HGA V+A+ + GK I+++ N + E L K
Sbjct: 88 AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L +GA+VNA + + TPLH+A ++ + LL++GA V+A G+ PL++A +
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
L IVE LLK A+VN+ D+FG+T +++ N + E L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ L +GA+VN D TPLH+A + V +L+K+GADVN N G+ PLH+A
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA 90
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
++ I L++HGA+VNA++K+ KT I+++ N
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-- 153
V IL N A+VN + G TPLH+AA G+ ++V VL+ +GA + G LH+A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 154 ------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
V +LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L +GA V+A G PL++A + +L IVE LLK A+VN++ GRT LHLA +
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I+E LL + AD+NA+ G T +++++ NE
Sbjct: 93 LEIVEVLLKHGADVNAQDKF----GKTAFDISIDNGNE 126
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
A+VN++D +G T LHLA + ++ I+E LL N AD+NA +G TPLHLA +++
Sbjct: 38 ADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG----RTPLHLAAWADHL 93
Query: 527 AVINKLLDYNPDLDVKDKNGNTALHPS 553
++ LL + D++ +DK G TA S
Sbjct: 94 EIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 39/158 (24%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V+++ GA+V+A D T L +A GHL+IVE LL +GA V+
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 270 SLQFI-HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMF 328
+ +PLHLA H+ IV+
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVE------------------------------------- 97
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366
LL HGA+VN +D KT I+I++ D +L K
Sbjct: 98 -VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 46/150 (30%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
AAR G VR+L +GA ++ G+ LH+A V +LL+ GAD+N N G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
+T +A + +E+ LK+
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKH-------------------------------------- 102
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + + + LL +GA+VN + +TPLH+A + + V +L+KHGADVN
Sbjct: 50 PLHLAAMLG--HLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 373 VIDNQGQMPLHIAVQNG 389
D G+ I++ NG
Sbjct: 108 AQDKFGKTAFDISIDNG 124
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 18 QAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAV 74
+A + Q ++L GA++N D + G + LH+AA ++ +V +LL+ DVNA
Sbjct: 20 EAARAGQDDEVRILTANGADVNANDYW---GHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
N G T LH A + VE+L + A+VN ++K G T I+ GN + +L
Sbjct: 77 GNTGRTPLHLAAWADHLE--IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
ADVNA + G T A + I ++L + GA++N + G++ LH+AA + + +V
Sbjct: 38 ADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWADHLEIV 96
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
+LL++ DVNA D G T SI + EIL+
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDI--SIDNGNEDLAEILQ 133
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 475 FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G+ +L A Q+ + L N AD+NA + W G+TPLHLA + ++ LL
Sbjct: 14 LGKKLLEAARAGQDDEV-RILTANGADVNA---NDYW-GHTPLHLAAMLGHLEIVEVLLK 68
Query: 535 YNPDLDVKDKNGNTALH 551
D++ G T LH
Sbjct: 69 NGADVNATGNTGRTPLH 85
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
+T + LL GA+ NV+D +P+H A + D + +LV+HGADVNV D G +P+H
Sbjct: 53 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 384 IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+AVQ G+ A+ + + ++++ R+ TPL +A+++ ++ L H
Sbjct: 113 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 53 AATKNIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
AA +++ VR LL V +A++ G T L + T A+E+LK A+ N+++
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST--AIALELLKQG-ASPNVQDT 72
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
G +P+H AARTG ++VL++HGA + G +H+AV
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ ++ G+ L + + L++ GA+ N ++ +P+H A + L L+E
Sbjct: 36 DALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
HGA V+ G P+++AV+ + ++V L +++++ D G T L LA++
Sbjct: 96 HGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQ 148
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L R + +A N++ KT L + + AL LL+ GA + + G P++ A
Sbjct: 28 LHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGF 86
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L ++ L++ A+VN D G +HLAV+ + A++ L ++D++ + +G T
Sbjct: 87 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDA----RGLT 141
Query: 516 PLHLAVESNNEAVINKL 532
PL LA++ + +++ L
Sbjct: 142 PLELALQRGAQDLVDIL 158
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV------AVGI-LLRKGAD 163
+ GD AAR ++ R+L H + N G AL V A+ + LL++GA
Sbjct: 7 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 66
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHG-GQLLLHL-VRNGH 221
NV++ G + A +++ +++G +V NV G G L +HL V+ GH
Sbjct: 67 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGH 119
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
AV L +++H +D T L++A++ G +V+ L H
Sbjct: 120 -TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 6 NATNKEGITLFQQAIVSSQTPIAKLLAERGA--NINDPFPDDGKSCLHIAA-TKNIRLVR 62
+A N+ G T Q + S T IA L ++GA N+ D G S +H AA T + ++
Sbjct: 36 DALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQD---TSGTSPVHDAARTGFLDTLK 91
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
+L+E+ DVN D G +H TAV ++++ ++ G TPL +A +
Sbjct: 92 VLVEHGADVNVPDGTGALPIHLAVQ---EGHTAVVSFLAAESDLHRRDARGLTPLELALQ 148
Query: 123 TGNYKMVRVLIDH 135
G +V +L H
Sbjct: 149 RGAQDLVDILQGH 161
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L ++ G +L++GA+ + +D + + A G L ++ L++HGA V+
Sbjct: 42 GKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 270 SLQFIHS-PLHLAIEKQHIAIV 290
+ P+HLA+++ H A+V
Sbjct: 102 VPDGTGALPIHLAVQEGHTAVV 123
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
+T + LL GA+ NV+D +P+H A + D + +LV+HGADVNV D G +P+H
Sbjct: 47 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 384 IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+AVQ G+ A+ + + ++++ R+ TPL +A+++ ++ L H
Sbjct: 107 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 53 AATKNIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
AA +++ VR LL V +A++ G T L + T A+E+LK A+ N+++
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST--AIALELLKQG-ASPNVQDT 66
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
G +P+H AARTG ++VL++HGA + G +H+AV
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L R + +A N++ KT L + + AL LL+ GA + + G P++ A
Sbjct: 22 LHRELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L ++ L++ A+VN D G +HLAV+ + A++ L ++D++ + +G T
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDA----RGLT 135
Query: 516 PLHLAVESNNEAVINKL 532
PL LA++ + +++ L
Sbjct: 136 PLELALQRGAQDLVDIL 152
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ ++ G+ L + + L++ GA+ N ++ +P+H A + L L+E
Sbjct: 30 DALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
HGA V+ G P+++AV+ + ++V L +++++ D G T L LA++
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQ 142
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV------AVGI-LLRKGAD 163
+ GD AAR ++ R+L H + N G AL V A+ + LL++GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHG-GQLLLHL-VRNGH 221
NV++ G + A +++ +++G +V NV G G L +HL V+ GH
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGH 113
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
AV L +++H +D T L++A++ G +V+ L H
Sbjct: 114 -TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 6 NATNKEGITLFQQAIVSSQTPIAKLLAERGA--NINDPFPDDGKSCLHIAA-TKNIRLVR 62
+A N+ G T Q + S T IA L ++GA N+ D G S +H AA T + ++
Sbjct: 30 DALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQD---TSGTSPVHDAARTGFLDTLK 85
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAAR 122
+L+E+ DVN D G +H TAV ++++ ++ G TPL +A +
Sbjct: 86 VLVEHGADVNVPDGTGALPIHLAVQ---EGHTAVVSFLAAESDLHRRDARGLTPLELALQ 142
Query: 123 TGNYKMVRVLIDH 135
G +V +L H
Sbjct: 143 RGAQDLVDILQGH 155
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L ++ G +L++GA+ + +D + + A G L ++ L++HGA V+
Sbjct: 36 GKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Query: 270 SLQFIHS-PLHLAIEKQHIAIV 290
+ P+HLA+++ H A+V
Sbjct: 96 VPDGTGALPIHLAVQEGHTAVV 117
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 63/102 (61%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL GA+ NV+D +P+H A + D + +LV+HGADVN +D+ G +P+H+A++ G+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
++ + + ++++ R+ TPL +A ++ + ++ L H
Sbjct: 122 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 53 AATKNIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
AA +++ VR LL V +A++ G T L + + A+E+LK A+ N+++
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MFGSPAVALELLKQG-ASPNVQDA 74
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
G +P+H AARTG ++VL++HGA + G +H+A+
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ ++ G+ L + + L++ GA+ N ++ +P+H A + L L+E
Sbjct: 38 DALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
HGA V+A G P+++A+ + S+V L +++++ D G T L LA
Sbjct: 98 HGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHRDASGLTPLELA 148
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L R + +A N++ KT L + + AL LL+ GA + + G P++ A
Sbjct: 30 LHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGF 88
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L ++ L++ A+VN+ D G +HLA++ + +++ L ++D++ + SG+ T
Sbjct: 89 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL----T 143
Query: 516 PLHLAVESNNEAVINKL 532
PL LA + + +++ L
Sbjct: 144 PLELARQRGAQNLMDIL 160
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV------AVGI-LLRKGADIN 165
GD AAR ++ R+L H + N G AL V AV + LL++GA N
Sbjct: 11 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 70
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNA 224
V++ G + A +++ +++G +V + G L +HL +R GH +
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA------LDSTGSLPIHLAIREGHSSV 124
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
V L +++H +D T L++A + G +++ L H
Sbjct: 125 VSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
+ +P+H + +T K L+ HGA+VN D P+H+AI VS L
Sbjct: 75 SGTSPVHDAARTGFLDT--LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 369 ADVNVIDNQGQMPLHIAVQNG 389
+D++ D G PL +A Q G
Sbjct: 132 SDLHHRDASGLTPLELARQRG 152
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
DA + GK L + + + ++ +LLK A+ N D G + +H A + + L+ L+
Sbjct: 38 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ AD+NA +G P+HLA+ + +V++ L DL +D +G T L
Sbjct: 97 EHGADVNALDSTG----SLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPL 145
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L ++ G +L++GA+ + +D + + A G L ++ L++HGA V+
Sbjct: 44 GKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103
Query: 270 SLQFIHS-PLHLAIEKQHIAIV 290
+L S P+HLAI + H ++V
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVV 125
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK+ L + + + LL+ N D G + +H A D +++L + A+
Sbjct: 44 GKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLD--TLKVLVEHGAD 101
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVL 132
VN + G P+H+A R G+ +V L
Sbjct: 102 VNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 63/102 (61%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL GA+ NV+D +P+H A + D + +LV+HGADVN +D+ G +P+H+A++ G+
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
++ + + ++++ R+ TPL +A ++ + ++ L H
Sbjct: 120 SSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 53 AATKNIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
AA +++ VR LL V +A++ G T L + + A+E+LK A+ N+++
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MFGSPAVALELLKQG-ASPNVQDA 72
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
G +P+H AARTG ++VL++HGA + G +H+A+
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ ++ G+ L + + L++ GA+ N ++ +P+H A + L L+E
Sbjct: 36 DALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
HGA V+A G P+++A+ + S+V L +++++ D G T L LA
Sbjct: 96 HGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHHRDASGLTPLELA 146
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L R + +A N++ KT L + + AL LL+ GA + + G P++ A
Sbjct: 28 LHRELVHPDALNRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGF 86
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L ++ L++ A+VN+ D G +HLA++ + +++ L ++D++ + SG+ T
Sbjct: 87 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL----T 141
Query: 516 PLHLAVESNNEAVINKL 532
PL LA + + +++ L
Sbjct: 142 PLELARQRGAQNLMDIL 158
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV------AVGI-LLRKGADIN 165
GD AAR ++ R+L H + N G AL V AV + LL++GA N
Sbjct: 9 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 68
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNA 224
V++ G + A +++ +++G +V + G L +HL +R GH +
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA------LDSTGSLPIHLAIREGHSSV 122
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
V L +++H +D T L++A + G +++ L H
Sbjct: 123 VSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
+ +P+H + +T K L+ HGA+VN D P+H+AI VS L
Sbjct: 73 SGTSPVHDAARTGFLDT--LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 369 ADVNVIDNQGQMPLHIAVQNG 389
+D++ D G PL +A Q G
Sbjct: 130 SDLHHRDASGLTPLELARQRG 150
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
DA + GK L + + + ++ +LLK A+ N D G + +H A + + L+ L+
Sbjct: 36 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ AD+NA +G P+HLA+ + +V++ L DL +D +G T L
Sbjct: 95 EHGADVNALDSTG----SLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPL 143
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L ++ G +L++GA+ + +D + + A G L ++ L++HGA V+
Sbjct: 42 GKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 270 SLQFIHS-PLHLAIEKQHIAIV 290
+L S P+HLAI + H ++V
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVV 123
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK+ L + + + LL+ N D G + +H A D +++L + A+
Sbjct: 42 GKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLD--TLKVLVEHGAD 99
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVL 132
VN + G P+H+A R G+ +V L
Sbjct: 100 VNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 39/238 (16%)
Query: 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHI 287
++E G +V D+ T L A + + +V++ + GA VD L
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL---------------- 71
Query: 288 AIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKT 347
G N PLH ++ + +M L+ +GA+ ++ D E +
Sbjct: 72 ------------------GGDLNSTPLHWATRQG--HLSMVVQLMKYGADPSLIDGEGCS 111
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN--LIRHGANVNA 405
+H+A + V+ L+ G DV+++D G PL A + P L+ +VN
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 406 RNKYAK-TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+KY K T LH AV N + ++ LLE GA VDA+ G+ L +A + N+ ++ L
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 39/209 (18%)
Query: 327 MFKTLLYHGANVN-VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+ K + GA V+ + D N TPLH A V L+K+GAD ++ID +G +H+A
Sbjct: 57 LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 386 VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
Q G+ +I + YL+ G VD Q G
Sbjct: 117 AQFGHTSI--------------------------------VAYLIAKGQDVDMMDQNGMT 144
Query: 446 PL-YIAVEMHNLSIVEQLLKFKANVNSSDQFGR-TVLHLAVKIQNVAILECLLVNKADIN 503
PL + A H++ LL F +VN D++ + T LH AV N ++ LL A+++
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKL 532
A+ I KG + L LA + N +IN L
Sbjct: 205 AQNI----KGESALDLAKQRKNVWMINHL 229
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEG----DTPL 117
R L+E DV D T+LH A+I R ++++K + I ++ G TPL
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHW-AAINNR----IDLVKYYISKGAIVDQLGGDLNSTPL 80
Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENN 169
H A R G+ MV L+ +GA + +G + +H+A V L+ KG D+++ +
Sbjct: 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140
Query: 170 FGKTAFQM-AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
G T AY + L L + V+V + H L V G+ + L+
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL----GDKYHKNTALHWAVLAGNTTVISLL 196
Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LE GANV A++ ++ALD+A + ++ ++ L
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 39/213 (18%)
Query: 374 IDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
ID+ + A Q G Y L+ G +V +K T LH A + + Y +
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64
Query: 433 GAQVDARTQLGKD----PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
GA VD QLG D PL+ A +LS+V QL+K+ A+ + D G + +HLA + +
Sbjct: 65 GAIVD---QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 489 VAILECLLVNKADINAKIISG----IWKGY---------------------------TPL 517
+I+ L+ D++ +G +W Y T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
H AV + N VI+ LL+ ++D ++ G +AL
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVR 62
DV +KE +TL A ++++ + K +GA ++ D + LH A + + +V
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA- 121
L++Y D + +D G + +H A A I K +V++ ++ G TPL AA
Sbjct: 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ--DVDMMDQNGMTPLMWAAY 151
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYN-ALHVAV--------GILLRKGADINVENNFGK 172
RT + R+L+ + N ALH AV +LL GA+++ +N G+
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE 211
Query: 173 TAFQMAYEMKNFPAI 187
+A +A + KN I
Sbjct: 212 SALDLAKQRKNVWMI 226
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 16/201 (7%)
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL---- 212
L+ G D+ + T A ++ ++ G V+Q GG L
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL--------GGDLNSTP 79
Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
L R GH + V +++ GA+ D + + +A + GH IV +L+ G VD +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 272 QFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
Q +PL A + H K N A LH V NTT+ L
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA-LHWAVLAG--NTTVISLL 196
Query: 332 LYHGANVNVKDDENKTPLHIA 352
L GANV+ ++ + ++ L +A
Sbjct: 197 LEAGANVDAQNIKGESALDLA 217
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 335 GANVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQM 380
G +VNV+ + TPL IA E +S + GA + N D G+
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 381 PLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDA 438
LH+A + A L+ A+ N ++ +TPLH AV L+ + A +DA
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
R G PL +A + ++E L+ A+VN+ D G++ LH A + NV LL N
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
A+ + + + TPL LA + LLD+ + D+ D
Sbjct: 181 GANKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 41/246 (16%)
Query: 34 RGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
+GA++++ G++ LH+AA + LLE + D N DN+G T LH S +
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ- 104
Query: 93 PTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
+IL NRA +++ + +G TPL +AAR M+ LI+ +H
Sbjct: 105 -GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SH------------- 148
Query: 152 VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
AD+N ++ GK+A A + N A + LK G N + +N +
Sbjct: 149 ----------ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNREETP 194
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
L L R G K++L+ AN D + + DIA E H IV L D
Sbjct: 195 LFL-AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL-------DEY 246
Query: 272 QFIHSP 277
+ SP
Sbjct: 247 NLVRSP 252
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD N + G T A+ + + ++L A D DG + L +AA + ++
Sbjct: 82 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 141
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ A +L N AN +++N +TPL +AA
Sbjct: 142 EDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAA 199
Query: 122 RTGNYKMVRVLIDHGAHTECKNH 144
R G+Y+ +VL+DH A+ + +H
Sbjct: 200 REGSYETAKVLLDHFANRDITDH 222
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 400 GANVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKD 445
G +VN R TPL IA E+ + ++ + GA + +T + G+
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINA 504
L++A ++LL+ A+ N D GRT LH AV + + L+ N+A D++A
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 505 KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
++ G TPL LA E ++ L++ + D++ D G +ALH
Sbjct: 121 RM----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T + LHL + + K LL A+ N++D+ +TPLH A+ + +L+++
Sbjct: 57 TGETALHLAARYSRSDAA--KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 369 A-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A D++ + G PL +A + + +LI A+VNA + K+ LH A N+ A
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 28/244 (11%)
Query: 161 GADINVENNFGKTAFQMAY------------EMKNFPA-IELFLKYGVNVEQCVCHENVK 207
G D+NV G T +A E ++ PA I F+ G ++ H
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTD 55
Query: 208 HGGQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G+ LHL R +A K +LE A+ + +D + +T L AV + + L+ + A
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 267 CVDSLQFIH---SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSW 323
D +H +PL LA +A+ K+ LH +
Sbjct: 116 T-DLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN- 170
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
LL +GAN +++++ +TPL +A ++ +L+ H A+ ++ D+ ++P
Sbjct: 171 -VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 229
Query: 384 IAVQ 387
IA +
Sbjct: 230 IAQE 233
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 17/196 (8%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILL 158
N ++ G+T LH+AAR + L++ A +++ G LH AV IL+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 159 R-KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL- 216
R + D++ + G T +A + A+E L+ +N V V G+ LH
Sbjct: 112 RNRATDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADV--NAVDDLGKSALHWA 165
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHS 276
+ +A ++L+ GAN ++ +T L +A G + + LLDH A D +
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 225
Query: 277 -PLHLAIEKQHIAIVQ 291
P +A E+ H IV+
Sbjct: 226 LPRDIAQERMHHDIVR 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 65/286 (22%)
Query: 105 NVNIKNKEGDTPLHIAA------RTGNYK-------MVRVLIDHGA--HTECKNHQGYNA 149
+VN++ +G TPL IA+ TGN + ++ I GA H + + G A
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETA 61
Query: 150 LHVAVGI--------LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCV 201
LH+A LL AD N+++N G+T A ++ ++
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 202 CHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
H+ G L+ R + ++ ++ A+V+A D L K+AL A ++ L
Sbjct: 122 MHD----GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 262 LDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRK 321
L +GA D + + PL L +
Sbjct: 178 LKNGANKD-----------------------------------MQNNREETPLFLAAREG 202
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
S+ T K LL H AN ++ D ++ P IA E D V LL ++
Sbjct: 203 SYETA--KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 246
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
+VN +D E + TPLH A V L++HGADV+ D G +PLH A G+ +
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
L++HGA VN + + TPLH A + LL+HGA + + G PL
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 313 PLHLVVQRKSWN-TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
PLH +N ++ + LL HGA+V+ KD PLH A ++ LLVKHGA V
Sbjct: 47 PLHFAA---GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
NV D PLH A G I L++HGA+ +N+ TPL +
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
+VN R+ + TPLH A +S + YLL+HGA V A+ + G PL+ A + +
Sbjct: 34 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E L+K A VN +D + T LH A I + LL + AD K G TPL L
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 149
Query: 520 AVESNNE 526
+ + +
Sbjct: 150 VKDGDTD 156
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
PL+ A + +S+VE LL+ A+V++ D+ G LH A + + E L+ + A +N
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 104
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
++ +WK +TPLH A + LL + D K+++GNT L
Sbjct: 105 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 15 LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNA 73
L + A + KL + N D + LH AA N + +V LL++ DV+A
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 74 VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + E+L + A VN+ + TPLH AA G Y++ ++L+
Sbjct: 73 KDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 134 DHGAHTECKNHQGYNAL 150
HGA KN G L
Sbjct: 131 QHGADPTKKNRDGNTPL 147
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 371 VNVIDNQGQM--PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALN 427
VN D +G+ PLH A V++ L++HGA+V+A++K PLH A +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
L++HGA V+ PL+ A I + LL+ A+ ++ G T L L
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 60/199 (30%)
Query: 219 NGHQNAVKLILE--KGANVHAKDQLC--------------KTALDIAVEHGHLKIVEFLL 262
+G+ A + +LE K +V +LC T L A + + +VE+LL
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 263 DHGACV---DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQ 319
HGA V D + PLH A H + +
Sbjct: 65 QHGADVHAKDKGGLV--PLHNACSYGHYEVAE---------------------------- 94
Query: 320 RKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQ 379
L+ HGA VNV D TPLH A ++ LL++HGAD + G
Sbjct: 95 ----------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 380 MPLHIAVQNGYVAIPNLIR 398
PL + V++G I +L+R
Sbjct: 145 TPLDL-VKDGDTDIQDLLR 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 47 KSCLHIAATKNIRLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
+ L A ++ V+ L +V+ ++ +T LH A + VE L + A+
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR--VSVVEYLLQHGAD 69
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------IL 157
V+ K+K G PLH A G+Y++ +L+ HGA + + LH A +L
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 158 LRKGADINVENNFGKTAFQM 177
L+ GAD +N G T +
Sbjct: 130 LQHGADPTKKNRDGNTPLDL 149
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNA--LHVAVGI--------LLR 159
N E D L AA+ G+ + V+ L + C++ +G + LH A G LL+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL--LLHLV 217
GAD++ ++ G A ++ EL +K+G V NV + L
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-------NVADLWKFTPLHEAA 118
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G KL+L+ GA+ K++ T LD+ V+ G I + L
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+N + I G + TPLH A N +V+ LL + D+ KDK G LH
Sbjct: 35 VNCRDIEG--RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 82
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGK-SCLHIAATKN-IRL 60
ADV+A +K G+ A +A+LL + GA +N D K + LH AA K +
Sbjct: 68 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEI 125
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA 104
+LLL++ D + GNT L V K D ++L+ + A
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDLV---KDGDTDIQDLLRGDAA 166
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
+VN +D E + TPLH A V L++HGADV+ D G +PLH A G+ +
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
L++HGA VN + + TPLH A + LL+HGA + + G PL
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 313 PLHLVVQRKSWN-TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
PLH +N ++ + LL HGA+V+ KD PLH A ++ LLVKHGA V
Sbjct: 45 PLHFAA---GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
NV D PLH A G I L++HGA+ +N+ TPL +
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
+VN R+ + TPLH A +S + YLL+HGA V A+ + G PL+ A + +
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E L+K A VN +D + T LH A I + LL + AD K G TPL L
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 147
Query: 520 AVESNNE 526
+ + +
Sbjct: 148 VKDGDTD 154
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
PL+ A + +S+VE LL+ A+V++ D+ G LH A + + E L+ + A +N
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 102
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
++ +WK +TPLH A + LL + D K+++GNT L
Sbjct: 103 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 15 LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNA 73
L + A + KL + N D + LH AA N + +V LL++ DV+A
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 74 VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + E+L + A VN+ + TPLH AA G Y++ ++L+
Sbjct: 71 KDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 134 DHGAHTECKNHQGYNAL 150
HGA KN G L
Sbjct: 129 QHGADPTKKNRDGNTPL 145
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 371 VNVIDNQGQM--PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALN 427
VN D +G+ PLH A V++ L++HGA+V+A++K PLH A +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
L++HGA V+ PL+ A I + LL+ A+ ++ G T L L
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 44/161 (27%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGACV---DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXX 300
T L A + + +VE+LL HGA V D + PLH A H + +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLV--PLHNACSYGHYEVAE--------- 92
Query: 301 XXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
L+ HGA VNV D TPLH A ++
Sbjct: 93 -----------------------------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
LL++HGAD + G PL + V++G I +L+R A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDA 163
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 47 KSCLHIAATKNIRLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
+ L A ++ V+ L +V+ ++ +T LH A + VE L + A+
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR--VSVVEYLLQHGAD 67
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------IL 157
V+ K+K G PLH A G+Y++ +L+ HGA + + LH A +L
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 158 LRKGADINVENNFGKTAFQM 177
L+ GAD +N G T +
Sbjct: 128 LQHGADPTKKNRDGNTPLDL 147
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV---DSLQFIHSPLH 279
+ V+ +L+ GA+VHAKD+ L A +GH ++ E L+ HGA V D +F +PLH
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--TPLH 113
Query: 280 LAIEKQHIAIVQ 291
A K I +
Sbjct: 114 EAAAKGKYEICK 125
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNA--LHVAVGI--------L 157
+ N E D L AA+ G+ + V+ L + C++ +G + LH A G L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL--LLH 215
L+ GAD++ ++ G A ++ EL +K+G V NV + L
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-------NVADLWKFTPLHE 114
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G KL+L+ GA+ K++ T LD+ V+ G I + L
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+N + I G + TPLH A N +V+ LL + D+ KDK G LH
Sbjct: 33 VNCRDIEG--RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGK-SCLHIAATKN-IRL 60
ADV+A +K G+ A +A+LL + GA +N D K + LH AA K +
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEI 123
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA 104
+LLL++ D + GNT L V K D ++L+ + A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLV---KDGDTDIQDLLRGDAA 164
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 337 NVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
+VN +D E + TPLH A V L++HGADV+ D G +PLH A G+ +
Sbjct: 36 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
L++HGA VN + + TPLH A + LL+HGA + + G PL
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 313 PLHLVVQRKSWN-TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
PLH +N ++ + LL HGA+V+ KD PLH A ++ LLVKHGA V
Sbjct: 49 PLHFAA---GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
NV D PLH A G I L++HGA+ +N+ TPL +
Sbjct: 106 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
+VN R+ + TPLH A +S + YLL+HGA V A+ + G PL+ A + +
Sbjct: 36 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E L+K A VN +D + T LH A I + LL + AD K G TPL L
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----GNTPLDL 151
Query: 520 AVESNNE 526
+ + +
Sbjct: 152 VKDGDTD 158
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
PL+ A + +S+VE LL+ A+V++ D+ G LH A + + E L+ + A +N
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-- 106
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
++ +WK +TPLH A + LL + D K+++GNT L
Sbjct: 107 -VADLWK-FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 15 LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNA 73
L + A + KL + N D + LH AA N + +V LL++ DV+A
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 74 VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + E+L + A VN+ + TPLH AA G Y++ ++L+
Sbjct: 75 KDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 134 DHGAHTECKNHQGYNAL 150
HGA KN G L
Sbjct: 133 QHGADPTKKNRDGNTPL 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 371 VNVIDNQGQM--PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALN 427
VN D +G+ PLH A V++ L++HGA+V+A++K PLH A +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
L++HGA V+ PL+ A I + LL+ A+ ++ G T L L VK
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDG 155
Query: 488 NVAILECLLVNKADINA 504
+ I + L + A ++A
Sbjct: 156 DTDIQDLLRGDAALLDA 172
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 44/161 (27%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGACV---DSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXX 300
T L A + + +VE+LL HGA V D + PLH A H + +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLV--PLHNACSYGHYEVAE--------- 96
Query: 301 XXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
L+ HGA VNV D TPLH A ++
Sbjct: 97 -----------------------------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
LL++HGAD + G PL + V++G I +L+R A
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDA 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 47 KSCLHIAATKNIRLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
+ L A ++ V+ L +V+ ++ +T LH A + VE L + A+
Sbjct: 14 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR--VSVVEYLLQHGAD 71
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------IL 157
V+ K+K G PLH A G+Y++ +L+ HGA + + LH A +L
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 158 LRKGADINVENNFGKTAFQM 177
L+ GAD +N G T +
Sbjct: 132 LQHGADPTKKNRDGNTPLDL 151
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV---DSLQFIHSPLH 279
+ V+ +L+ GA+VHAKD+ L A +GH ++ E L+ HGA V D +F +PLH
Sbjct: 60 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--TPLH 117
Query: 280 LAIEKQHIAIVQ 291
A K I +
Sbjct: 118 EAAAKGKYEICK 129
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNA--LHVAVGI------ 156
+++ N E D L AA+ G+ + V+ L + C++ +G + LH A G
Sbjct: 4 GISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 157 --LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL-- 212
LL+ GAD++ ++ G A ++ EL +K+G V NV +
Sbjct: 63 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-------NVADLWKFTP 115
Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
L G KL+L+ GA+ K++ T LD+ V+ G I + L A +D+
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAALLDA 172
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+N + I G + TPLH A N +V+ LL + D+ KDK G LH
Sbjct: 37 VNCRDIEG--RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 84
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGK-SCLHIAATKN-IRL 60
ADV+A +K G+ A +A+LL + GA +N D K + LH AA K +
Sbjct: 70 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN--VADLWKFTPLHEAAAKGKYEI 127
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
+LLL++ D + GNT L V K D ++L+ + A ++ K
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDLV---KDGDTDIQDLLRGDAALLDAAKK 175
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 337 NVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
+VNV+ + TPL IA E +S + GA + N D G+ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 383 HIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDART 440
H+A + A L+ A+ N ++ +TPLH AV L+ + A +DAR
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
G PL +A + ++E L+ A+VN+ D G++ LH A + NV LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
+ + + + TPL LA + LLD+ + D+ D
Sbjct: 182 NKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD N + G T A+ + + ++L A D DG + L +AA + ++
Sbjct: 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ A +L N AN +++N +TPL +AA
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAA 198
Query: 122 RTGNYKMVRVLIDHGAHTECKNH 144
R G+Y+ +VL+DH A+ + +H
Sbjct: 199 REGSYETAKVLLDHFANRDITDH 221
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 34/230 (14%)
Query: 34 RGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
+GA++++ G++ LH+AA + LLE + D N DN+G T LH S +
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ- 103
Query: 93 PTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
+IL NRA +++ + +G TPL +AAR M+ LI+ +H
Sbjct: 104 -GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SH------------- 147
Query: 152 VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
AD+N ++ GK+A A + N A + LK G N + +N +
Sbjct: 148 ----------ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNREETP 193
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
L L R G K++L+ AN D + + DIA E H IV L
Sbjct: 194 LFL-AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T + LHL + + K LL A+ N++D+ +TPLH A+ + +L+++
Sbjct: 56 TGETALHLAARYSRSDAA--KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 369 A-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A D++ + G PL +A + + +LI A+VNA + K+ LH A N+ A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 402 NVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKDPL 447
+VN R TPL IA E+ + ++ + GA + +T + G+ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKI 506
++A ++LL+ A+ N D GRT LH AV + + L+ N+A D++A++
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G TPL LA E ++ L++ + D++ D G +ALH
Sbjct: 122 ----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 17/196 (8%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILL 158
N ++ G+T LH+AAR + L++ A +++ G LH AV IL+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 159 R-KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL- 216
R + D++ + G T +A + A+E L+ +N V V G+ LH
Sbjct: 111 RNRATDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADV--NAVDDLGKSALHWA 164
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHS 276
+ +A ++L+ GAN ++ +T L +A G + + LLDH A D +
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Query: 277 -PLHLAIEKQHIAIVQ 291
P +A E+ H IV+
Sbjct: 225 LPRDIAQERMHHDIVR 240
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 28/242 (11%)
Query: 163 DINVENNFGKTAFQMAY------------EMKNFPA-IELFLKYGVNVEQCVCHENVKHG 209
D+NV G T +A E ++ PA I F+ G ++ H
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTDRT 56
Query: 210 GQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
G+ LHL R +A K +LE A+ + +D + +T L AV + + L+ + A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT- 115
Query: 269 DSLQFIH---SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNT 325
D +H +PL LA +A+ K+ LH +
Sbjct: 116 DLDARMHDGTTPLILAA---RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN--V 170
Query: 326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
LL +GAN +++++ +TPL +A ++ +L+ H A+ ++ D+ ++P IA
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Query: 386 VQ 387
+
Sbjct: 231 QE 232
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 107/283 (37%), Gaps = 65/283 (22%)
Query: 105 NVNIKNKEGDTPLHIAA------RTGNYK-------MVRVLIDHGA--HTECKNHQGYNA 149
+VN++ +G TPL IA+ TGN + ++ I GA H + + G A
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETA 60
Query: 150 LHVAVGI--------LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCV 201
LH+A LL AD N+++N G+T A ++ ++
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 202 CHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
H+ G L+ R + ++ ++ A+V+A D L K+AL A ++ L
Sbjct: 121 MHD----GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 262 LDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRK 321
L +GA D + + PL L +
Sbjct: 177 LKNGANKD-----------------------------------MQNNREETPLFLAAREG 201
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL 364
S+ T K LL H AN ++ D ++ P IA E D V LL
Sbjct: 202 SYETA--KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 35/210 (16%)
Query: 314 LHLVV--QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
LHL + + K+ + + + A +N +++ +TPLH+A+ + + L+ G D
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP-LHIAVEQKNMSALNYLL 430
+ D +G PLH+A + G +A +V + TP LH ++ N +
Sbjct: 69 ELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATNYN------ 113
Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNV 489
G L++A L IVE L+ A+VN+ + GRT LHLAV +QN
Sbjct: 114 ------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHL 519
++ LL AD+N ++GY+P L
Sbjct: 162 DLVSLLLKCGADVNRV----TYQGYSPYQL 187
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A +N +N +TPLH+AV LL G + R G PL++A E L+ V
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 461 QLLK------FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
L + + + +++ G T LHLA + I+E L+ AD+NA+ G
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGR 149
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLD 540
T LHLAV+ N +++ LL D++
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGADVN 175
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQ 291
A ++ ++ L +T L +AV +I E LL G + F ++PLHLA E+ +A V
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 292 XXXXXXXXXXXXXTKGPTN---KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN-KT 347
TN LHL + + L+ GA+VN ++ N +T
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG--IVELLVSLGADVNAQEPCNGRT 150
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
LH+A++ Q D VSLL+K GADVN + QG P +
Sbjct: 151 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 38/223 (17%)
Query: 78 GNTVLHTVASIKTRDPTAVEIL---KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
G++ LH +A I +E++ K + A +N +N TPLH+A T ++ L+
Sbjct: 5 GDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 135 HGAHTECKNHQGYNALHVAV--GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
G E ++ +G LH+A G L A + V T P + LK
Sbjct: 64 AGCDPELRDFRGNTPLHLACEQGCL----ASVGVLTQSCTT-----------PHLHSILK 108
Query: 193 YGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEKGANVHAKDQLC--KTALDIA 249
+ G LHL +G+ V+L++ GA+V+A++ C +TAL +A
Sbjct: 109 ------------ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CNGRTALHLA 155
Query: 250 VEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQ 291
V+ + +V LL GA V+ + + +SP L + I Q
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 198
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRL 63
+ ATN G T A + I +LL GA++N P +G++ LH+A +N LV L
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 64 LLEYNVDVNAVDNLG 78
LL+ DVN V G
Sbjct: 167 LLKCGADVNRVTYQG 181
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
TPLHLAV +N + LL D +++D GNT LH
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 80
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATKNIRL 60
A +N N T A++++Q IA+ L G DP D G + LH+A +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLA 89
Query: 61 VRLLLEYNVD-------VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK-E 112
+L + + A + G+T LH +ASI VE+L + A+VN +
Sbjct: 90 SVGVLTQSCTTPHLHSILKATNYNGHTCLH-LASIHGYL-GIVELLVSLGADVNAQEPCN 147
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
G T LH+A N +V +L+ GA +QGY+ + G
Sbjct: 148 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 190
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 35/211 (16%)
Query: 314 LHLVV--QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
LHL + + K+ + + + A +N +++ +TPLH+A+ + + L+ G D
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP-LHIAVEQKNMSALNYLL 430
+ D +G PLH+A + G +A +V + TP LH ++ N +
Sbjct: 72 ELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATNYN------ 116
Query: 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNV 489
G L++A L IVE L+ A+VN+ + GRT LHLAV +QN
Sbjct: 117 ------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLA 520
++ LL AD+N ++GY+P L
Sbjct: 165 DLVSLLLKCGADVNRV----TYQGYSPYQLT 191
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A +N +N +TPLH+AV LL G + R G PL++A E L+ V
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 461 QLLK------FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
L + + + +++ G T LHLA + I+E L+ AD+NA+ G
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGR 152
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLD 540
T LHLAV+ N +++ LL D++
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQ 291
A ++ ++ L +T L +AV +I E LL G + F ++PLHLA E+ +A V
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 292 XXXXXXXXXXXXXTKGPTN---KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN-KT 347
TN LHL + + L+ GA+VN ++ N +T
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG--IVELLVSLGADVNAQEPCNGRT 153
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
LH+A++ Q D VSLL+K GADVN + QG P +
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 38/223 (17%)
Query: 78 GNTVLHTVASIKTRDPTAVEIL---KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
G++ LH +A I +E++ K + A +N +N TPLH+A T ++ L+
Sbjct: 8 GDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 135 HGAHTECKNHQGYNALHVAV--GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
G E ++ +G LH+A G L A + V T P + LK
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCL----ASVGVLTQSCTT-----------PHLHSILK 111
Query: 193 YGVNVEQCVCHENVKHGGQLLLHLVR-NGHQNAVKLILEKGANVHAKDQLC--KTALDIA 249
+ G LHL +G+ V+L++ GA+V+A++ C +TAL +A
Sbjct: 112 ------------ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CNGRTALHLA 158
Query: 250 VEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQ 291
V+ + +V LL GA V+ + + +SP L + I Q
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVRL 63
+ ATN G T A + I +LL GA++N P +G++ LH+A +N LV L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 64 LLEYNVDVNAVDNLG 78
LL+ DVN V G
Sbjct: 170 LLKCGADVNRVTYQG 184
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
TPLHLAV +N + LL D +++D GNT LH
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 19 AIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATKNIRLVRLLLEYNVD------ 70
A++++Q IA+ L G DP D G + LH+A + +L +
Sbjct: 52 AVITNQPEIAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 71 -VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK-EGDTPLHIAARTGNYKM 128
+ A + G+T LH +ASI VE+L + A+VN + G T LH+A N +
Sbjct: 109 ILKATNYNGHTCLH-LASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 129 VRVLIDHGAHTECKNHQGYNALHVAVG 155
V +L+ GA +QGY+ + G
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWG 193
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 20/223 (8%)
Query: 337 NVNVKDDENKTPLHIAI-------------ESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
+VNV+ + TPL IA E +S + GA + N D G L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 383 HIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA-QVDART 440
H+A A L+ A+ N ++ +TPLH AV L+ + A +DAR
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
G PL +A + ++E L+ A+VN+ D G++ LH A + NV LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
+ + + + TPL LA + LLD+ + D+ D
Sbjct: 182 NKDMQ----NNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD N + G T A+ + + ++L A D DG + L +AA + ++
Sbjct: 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ A +L N AN +++N +TPL +AA
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAA 198
Query: 122 RTGNYKMVRVLIDHGAHTECKNH 144
R G+Y+ +VL+DH A+ + +H
Sbjct: 199 REGSYETAKVLLDHFANRDITDH 221
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 34/230 (14%)
Query: 34 RGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
+GA++++ G + LH+AA + LLE + D N DN+G T LH S +
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ- 103
Query: 93 PTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
+IL NRA +++ + +G TPL +AAR M+ LI+ +H
Sbjct: 104 -GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SH------------- 147
Query: 152 VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
AD+N ++ GK+A A + N A + LK G N + +N +
Sbjct: 148 ----------ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNREETP 193
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
L L R G K++L+ AN D + + DIA E H IV L
Sbjct: 194 LFL-AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 4/171 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T LHL + K LL A+ N++D+ +TPLH A+ + +L+++
Sbjct: 56 TGATALHLAAAYSRSDAA--KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 369 A-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A D++ + G PL +A + + +LI A+VNA + K+ LH A N+ A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 402 NVNARNKYAKTPLHIAV-------------EQKNMSALNYLLEHGAQVDART-QLGKDPL 447
+VN R TPL IA E+ + ++ + GA + +T + G L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 448 YIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKI 506
++A ++LL+ A+ N D GRT LH AV + + L+ N+A D++A++
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G TPL LA E ++ L++ + D++ D G +ALH
Sbjct: 122 ----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 107/283 (37%), Gaps = 65/283 (22%)
Query: 105 NVNIKNKEGDTPLHIAA------RTGNYK-------MVRVLIDHGA--HTECKNHQGYNA 149
+VN++ +G TPL IA+ TGN + ++ I GA H + + G A
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGATA 60
Query: 150 LHVAVGI--------LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCV 201
LH+A LL AD N+++N G+T A ++ ++
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 202 CHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
H+ G L+ R + ++ ++ A+V+A D L K+AL A ++ L
Sbjct: 121 MHD----GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 262 LDHGACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRK 321
L +GA D + + PL L +
Sbjct: 177 LKNGANKD-----------------------------------MQNNREETPLFLAAREG 201
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL 364
S+ T K LL H AN ++ D ++ P IA E D V LL
Sbjct: 202 SYETA--KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 7/193 (3%)
Query: 231 KGANVHAK-DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIA 288
+GA++H + D+ TAL +A + + LL+ A + + +PLH A+
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 289 IVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTP 348
+ Q T L++ + M + L+ A+VN DD K+
Sbjct: 105 VFQILIRNRATDLDARMHDGTTP----LILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160
Query: 349 LHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARN 407
LH A DA +L+K+GA+ ++ +N+ + PL +A + G Y L+ H AN + +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Query: 408 KYAKTPLHIAVEQ 420
+ P IA E+
Sbjct: 221 HMDRLPRDIAQER 233
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNA 405
TPLH A ++ + V L+ GADVN G PLH+A +NG+ I L+ GA+VNA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
R+K TP H+A + + + L GA V+AR+
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 377 QGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
G PLH A +NG+ + L+ GA+VNAR+K TPLH+A + + + LL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
V+AR++ G P ++A + + IV+ L A+VN+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLH K+ + K LL GA+VN + + TPLH+A ++ + V LL+ GADVN
Sbjct: 12 PLHNAA--KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 373 VIDNQGQMPLHIAVQNGYVAIPNLIR-HGANVNARN 407
G P H+A +NG+ I L+ GA+VNAR+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
+K TPLH A + + + LL GA V+AR++ G PL++A + + IV+ LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
A+VN+ + G T HLA K + I++ L AD+NA+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
GNT LH A K V+ L + A+VN ++K+G+TPLH+AA+ G+ ++V++L+ GA
Sbjct: 9 GNTPLHNAA--KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVEN 168
++ G H+A V +L KGAD+N +
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
K G L + +NGH VK +L KGA+V+A+ + T L +A ++GH +IV+ LL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 267 CVDSL-QFIHSPLHLAIEKQHIAIVQ 291
V++ + ++P HLA + H IV+
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVK 92
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
++ G PL+ A + + V++LL A+VN+ + G T LHLA K + I++ LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
AD+NA+ G TP HLA ++ + ++ KLLD
Sbjct: 66 ADVNARSKD----GNTPEHLAKKNGHHEIV-KLLD 95
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKG 161
+K+G+TPLH AA+ G+ + V+ L+ GA ++ G LH+A V +LL KG
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
AD+N + G T +A + + ++L G +V
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
G T LH A K + ++ LL AD+NA+ G TPLHLA ++ + ++ LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG----NTPLHLAAKNGHAEIVKLLLAK 64
Query: 536 NPDLDVKDKNGNTALH 551
D++ + K+GNT H
Sbjct: 65 GADVNARSKDGNTPEH 80
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9 NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEY 67
+K+G T A + K L +GA++N DG + LH+AA +V+LLL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 68 NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN 110
DVNA GNT H K V++L A+VN ++
Sbjct: 65 GADVNARSKDGNTPEHLAK--KNGHHEIVKLLDAKGADVNARS 105
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI--RL 60
ADVNA +K+G T A + I KLL +GA++N DG + H+ A KN +
Sbjct: 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL-AKKNGHHEI 90
Query: 61 VRLLLEYNVDVNA 73
V+LL DVNA
Sbjct: 91 VKLLDAKGADVNA 103
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 7/186 (3%)
Query: 361 VSLLVKHGADV-NVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
+S + GA + N D G+ LH+A + A L+ A+ N ++ +TPLH AV
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 419 EQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
L+ + A +DAR G PL +A + ++E L+ A+VN+ D G+
Sbjct: 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 126
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
+ LH A + NV LL N A+ + + + TPL LA + LLD+
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNN----REETPLFLAAREGSYETAKVLLDHFA 182
Query: 538 DLDVKD 543
+ D+ D
Sbjct: 183 NRDITD 188
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 41/246 (16%)
Query: 34 RGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
+GA++++ G++ LH+AA + LLE + D N DN+G T LH S +
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ- 71
Query: 93 PTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
+IL NRA +++ + +G TPL +AAR M+ LI+
Sbjct: 72 -GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN----------------- 113
Query: 152 VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
AD+N ++ GK+A A + N A + LK G N + +N +
Sbjct: 114 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNREETP 161
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
L L R G K++L+ AN D + + DIA E H IV L D
Sbjct: 162 LFL-AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL-------DEY 213
Query: 272 QFIHSP 277
+ SP
Sbjct: 214 NLVRSP 219
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD N + G T A+ + + ++L A D DG + L +AA + ++
Sbjct: 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ A +L N AN +++N +TPL +AA
Sbjct: 109 EDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAA 166
Query: 122 RTGNYKMVRVLIDHGAHTECKNH 144
R G+Y+ +VL+DH A+ + +H
Sbjct: 167 REGSYETAKVLLDHFANRDITDH 189
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T + LHL + + K LL A+ N++D+ +TPLH A+ + +L+++
Sbjct: 24 TGETALHLAARYSRSDAA--KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 369 A-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A D++ + G PL +A + + +LI A+VNA + K+ LH A N+ A
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 192
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
+ G+ L++A ++LL+ A+ N D GRT LH AV + + L+ N+A
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 501 -DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
D++A++ G TPL LA E ++ L++ + D++ D G +ALH
Sbjct: 83 TDLDARM----HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 17/196 (8%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILL 158
N ++ G+T LH+AAR + L++ A +++ G LH AV IL+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 159 R-KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL- 216
R + D++ + G T +A + A+E L+ +N V V G+ LH
Sbjct: 79 RNRATDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADV--NAVDDLGKSALHWA 132
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHS 276
+ +A ++L+ GAN ++ +T L +A G + + LLDH A D +
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 192
Query: 277 -PLHLAIEKQHIAIVQ 291
P +A E+ H IV+
Sbjct: 193 LPRDIAQERMHHDIVR 208
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 200 CVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIV 258
H G+ LHL R +A K +LE A+ + +D + +T L AV +
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74
Query: 259 EFLLDHGACVDSLQFIH---SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLH 315
+ L+ + A D +H +PL LA +A+ K+ LH
Sbjct: 75 QILIRNRAT-DLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 130
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
+ LL +GAN +++++ +TPL +A ++ +L+ H A+ ++ D
Sbjct: 131 WAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Query: 376 NQGQMPLHIAVQNGYVAIPNLI 397
+ ++P IA + + I L+
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLL 210
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + + T+ + K N++ + G TP HIA GN ++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
D + +QG LH+AVG L+ GA + +++ F + A + +
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
IEL G + + K G L H + GH +A L++EK GA D
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
A D+A+
Sbjct: 209 AKAEDVAL 216
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
KD + + PLH ++ Q + S L+ +VN+ D+ G P HIA G + + +
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
++N T LH+AV +K +L+E+GA V + + + PL+ A +
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
+L ++E L K+ VN D+ G T L A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 27 IAKLLAERGANIN-DPFPDD-GKSCLHIAAT-KNIRLVRLLLEYNV--DVNAVDNLGNTV 81
I L + N+N D +PDD G + HIA + N+ +V+ L + + D+N + N G T
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTE 140
LH K + + + L N A+V IK+K PLH AA G+ K++ +L G +
Sbjct: 111 LHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 141 CKNHQGYNALH---------VAVGILLRKGADINVENNFGKTAFQMA 178
++ QG+ L AV ++ + GA+ ++ +N G A +A
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVN 372
LHL V +K + + F L+ +GA+V +KD N+ PLH A + LL G + VN
Sbjct: 111 LHLAVGKKWFEVSQF--LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 373 VIDNQGQMPLHIAVQNGY--VAIPNLIRHGANVN-ARNKYAKT 412
D QG PL A+ G+ A+ + ++GA + NK AK
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI--RHGANVN 404
T LH+A+ + ++ L+++GA V + D Q+PLH A G + + L+ + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
++K TPL A+ + + A L+E +GA+ D G + ++++ EQ+
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG-------AKAEDVALNEQVK 221
Query: 464 KFKAN 468
KF N
Sbjct: 222 KFFLN 226
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 413 PLHIAVEQKNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN- 470
PLH A + + LL + + + Q G+ PL+ +V I LL NVN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 471 --SSDQFGRTVLHLAVKIQNVAILECLLVN--KADINAKIISGIWKGYTPLHLAVESNNE 526
D G T H+A + N+ +++ L K D+N KI + +G T LHLAV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITN---QGVTCLHLAVGKKWF 120
Query: 527 AVINKLLDYNPDLDVKDKNGNTALH 551
V L++ + +KDK LH
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLH 145
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTEC--KNHQGYNALHVAVGI--------LLRKGADIN 165
PLH A + V+ L+ H + K+ G LH +V LL K ++N
Sbjct: 5 PLHQACMENEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 166 VEN---NFGKTAFQMAYEMKNFPAIELF----LKYGVNVEQCVCHENVKHGGQLLLHLVR 218
+++ + G T F +A + N ++ LK +N + + G LHL
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN--------KITNQGVTCLHLAV 115
Query: 219 NGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
V + ++E GA+V KD+ + L A G LK++E L G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + + T+ + K N++ + G TP HIA GN ++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
D + +QG LH+AVG L+ GA + +++ F + A + +
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
IEL G + + K G L H + GH +A L++EK GA D
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
A D+A+
Sbjct: 209 AKAEDVAL 216
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
KD + + PLH ++ Q + S L+ +VN+ D+ G P HIA G + + +
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
++N T LH+AV +K +L+E+GA V + + + PL+ A +
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
+L ++E L K+ VN D+ G T L A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 27 IAKLLAERGANIN-DPFPDD-GKSCLHIAAT-KNIRLVRLLLEYNV--DVNAVDNLGNTV 81
I L + N+N D +PDD G + HIA + N+ +V+ L + + D+N + N G T
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTE 140
LH K + + + L N A+V IK+K PLH AA G+ K++ +L G +
Sbjct: 111 LHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 141 CKNHQGYNALH---------VAVGILLRKGADINVENNFGKTAFQMA 178
++ QG+ L AV ++ + GA+ ++ +N G A +A
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVN 372
LHL V +K + + F L+ +GA+V +KD N+ PLH A + LL G + VN
Sbjct: 111 LHLAVGKKWFEVSQF--LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 373 VIDNQGQMPLHIAVQNGY--VAIPNLIRHGANVN-ARNKYAKT 412
D QG PL A+ G+ A+ + ++GA + NK AK
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI--RHGANVN 404
T LH+A+ + ++ L+++GA V + D Q+PLH A G + + L+ + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
++K TPL A+ + + A L+E +GA+ D G + ++++ EQ+
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG-------AKAEDVALNEQVK 221
Query: 464 KFKAN 468
KF N
Sbjct: 222 KFFLN 226
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 413 PLHIAVEQKNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN- 470
PLH A + + LL + + + Q G+ PL+ +V I LL NVN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 471 --SSDQFGRTVLHLAVKIQNVAILECLLVN--KADINAKIISGIWKGYTPLHLAVESNNE 526
D G T H+A + N+ +++ L K D+N KI + +G T LHLAV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITN---QGVTCLHLAVGKKWF 120
Query: 527 AVINKLLDYNPDLDVKDKNGNTALH 551
V L++ + +KDK LH
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLH 145
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTEC--KNHQGYNALHVAVGI--------LLRKGADIN 165
PLH A + V+ L+ H + K+ G LH +V LL K ++N
Sbjct: 5 PLHQACMENEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 166 VEN---NFGKTAFQMAYEMKNFPAIELF----LKYGVNVEQCVCHENVKHGGQLLLHLVR 218
+++ + G T F +A + N ++ LK +N + + G LHL
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN--------KITNQGVTCLHLAV 115
Query: 219 NGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
V + ++E GA+V KD+ + L A G LK++E L G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVN-IKNKEGDTPLHIAARTGNYKMVRVLI 133
D G LH S + + T+ + K N++ + G TP HIA GN ++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 134 DHGAHTECK--NHQGYNALHVAVG--------ILLRKGADINVENNFGKTAFQMAYEMKN 183
D + +QG LH+AVG L+ GA + +++ F + A + +
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLC 242
IEL G + + K G L H + GH +A L++EK GA D
Sbjct: 153 LKLIELLCGLG----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 243 KTALDIAV 250
A D+A+
Sbjct: 209 AKAEDVAL 216
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNV---IDNQGQMPLHIAVQNGYVAIPNLI 397
KD + + PLH ++ Q + S L+ +VN+ D+ G P HIA G + + +
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 398 RH---GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
++N T LH+AV +K +L+E+GA V + + + PL+ A +
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 455 NLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
+L ++E L K+ VN D+ G T L A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 27 IAKLLAERGANIN-DPFPDD-GKSCLHIAAT-KNIRLVRLLLEYNV--DVNAVDNLGNTV 81
I L + N+N D +PDD G + HIA + N+ +V+ L + + D+N + N G T
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTE 140
LH K + + + L N A+V IK+K PLH AA G+ K++ +L G +
Sbjct: 111 LHLAVGKKWFEVS--QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 141 CKNHQGYNALH---------VAVGILLRKGADINVENNFGKTAFQMA 178
++ QG+ L AV ++ + GA+ ++ +N G A +A
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVN 372
LHL V +K + + F L+ +GA+V +KD N+ PLH A + LL G + VN
Sbjct: 111 LHLAVGKKWFEVSQF--LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 373 VIDNQGQMPLHIAVQNGY--VAIPNLIRHGANVN-ARNKYAKT 412
D QG PL A+ G+ A+ + ++GA + NK AK
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI--RHGANVN 404
T LH+A+ + ++ L+++GA V + D Q+PLH A G + + L+ + VN
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
++K TPL A+ + + A L+E +GA+ D G + ++++ EQ+
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG-------AKAEDVALNEQVK 221
Query: 464 KFKAN 468
KF N
Sbjct: 222 KFFLN 226
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 413 PLHIAVEQKNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN- 470
PLH A + + LL + + + Q G+ PL+ +V I LL NVN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 471 --SSDQFGRTVLHLAVKIQNVAILECLLVN--KADINAKIISGIWKGYTPLHLAVESNNE 526
D G T H+A + N+ +++ L K D+N KI + +G T LHLAV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITN---QGVTCLHLAVGKKWF 120
Query: 527 AVINKLLDYNPDLDVKDKNGNTALH 551
V L++ + +KDK LH
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLH 145
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTEC--KNHQGYNALHVAVGI--------LLRKGADIN 165
PLH A + V+ L+ H + K+ G LH +V LL K ++N
Sbjct: 5 PLHQACMENEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 166 VEN---NFGKTAFQMAYEMKNFPAIELF----LKYGVNVEQCVCHENVKHGGQLLLHLVR 218
+++ + G T F +A + N ++ LK +N + + G LHL
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN--------KITNQGVTCLHLAV 115
Query: 219 NGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
V + ++E GA+V KD+ + L A G LK++E L G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Query: 361 VSLLVKHGADV-NVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
+S + GA + N D G+ LH+A + A L+ A+ ++ +TPLH AV
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 419 EQKNMSALNYLLEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL + A +DAR G PL +A + ++E L+ A+VN+ D G+
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
+ LH A + NV LL N A+ + + K TPL LA + LLD+
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNN----KEETPLFLAAREGSYETAKVLLDHFA 179
Query: 538 DLDVKD 543
+ D+ D
Sbjct: 180 NRDITD 185
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
AD + G T A+ + + ++L A D DG + L +AA + ++
Sbjct: 46 ADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGML 105
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ A +L N AN +++N + +TPL +AA
Sbjct: 106 EDLINSHADVNAVDDLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNKEETPLFLAA 163
Query: 122 RTGNYKMVRVLIDHGAHTECKNH 144
R G+Y+ +VL+DH A+ + +H
Sbjct: 164 REGSYETAKVLLDHFANRDITDH 186
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 34/230 (14%)
Query: 34 RGANINDPFPDDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
+GA++++ G++ LH+AA + LLE + D DN+G T LH S +
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQ- 68
Query: 93 PTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
+IL NRA +++ + +G TPL +AAR M+ LI+
Sbjct: 69 -GVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN----------------- 110
Query: 152 VAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
AD+N ++ GK+A A + N A + LK G N + +N K
Sbjct: 111 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNKEETP 158
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
L L R G K++L+ AN D + + DIA E H IV L
Sbjct: 159 LFL-AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
T + LHL + + K LL A+ ++D+ +TPLH A+ + +L+++
Sbjct: 21 TGETALHLAARYSRSDAA--KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 369 A-DVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A D++ + G PL +A + + +LI A+VNA + K+ LH A N+ A
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 189
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 424 SALNYLLEHGAQVDART-QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
S ++ + GA + +T + G+ L++A ++LL+ A+ D GRT LH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 483 AVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
AV + + LL N+A D++A++ G TPL LA E ++ L++ + D++
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARM----HDGTTPLILAARLALEGMLEDLINSHADVNA 117
Query: 542 KDKNGNTALH 551
D G +ALH
Sbjct: 118 VDDLGKSALH 127
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGA-NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
+ PLH V + +F+ LL + A +++ + + TPL +A + L+ A
Sbjct: 56 RTPLHAAVSADAQG--VFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 370 DVNVIDNQGQMPLH-IAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
DVN +D+ G+ LH A N A L+++GAN + +N +TPL +A + +
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
LL+H A D + + P IA E + IV L ++
Sbjct: 174 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 200 CVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIV 258
H G+ LHL R +A K +LE A+ +D + +T L AV +
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVF 71
Query: 259 EFLLDHGACVDSLQFIH---SPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLH 315
+ LL + A D +H +PL LA +A+ K+ LH
Sbjct: 72 QILLRNRAT-DLDARMHDGTTPLILAAR---LALEGMLEDLINSHADVNAVDDLGKSALH 127
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
+ LL +GAN ++++++ +TPL +A ++ +L+ H A+ ++ D
Sbjct: 128 WAAAVNN--VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
Query: 376 NQGQMPLHIAVQNGYVAIPNLI 397
+ ++P IA + + I L+
Sbjct: 186 HMDRLPRDIAQERMHHDIVRLL 207
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 411 KTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
++PL +A ++ ++ AL+ LL+ G +V R +G+ L+IA NL L++ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 470 ----NSSDQF-GRTVLHLAVKIQNVAILECLLVNKADINAKIISG---------IWKGYT 515
+S+ + G+T LH+AV QNV ++ LL A ++A+ I+ G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
PL A +E ++ L+++ D+ +D GNT LH
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
++PL L+ +++ + K L + G V+ + +T LHIA +A +L++ +
Sbjct: 4 ESPL-LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 371 VNVID------NQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNK-------------YA 410
+ V + +GQ LHIAV N V + L+ GA+V+AR Y
Sbjct: 63 L-VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
+ PL A + + L+EHGA + A+ LG L+I + N + Q+ + +
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 471 SSDQF 475
D
Sbjct: 182 GGDHL 186
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD------------GKSCLHIAA-TKN 57
EG T A+++ + + L RGA+++ G+ L AA +
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 58 IRLVRLLLEYNVDVNAVDNLGNTVLHTV--ASIKTRDPTAVEILKTNRANVNIK------ 109
+VRLL+E+ D+ A D+LGNTVLH + KT +L + ++K
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193
Query: 110 NKEGDTPLHIAARTGNYKMVRVLID 134
N +G TP +A GN M + L+
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 45 DGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
+G++ LHIA +N+ LVR LL V+A S+ P +
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSA---------RATGSVFHYRPHNLIYY---- 120
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
G+ PL AA G+ ++VR+LI+HGA ++ G LH+ +
Sbjct: 121 ---------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 44/170 (25%)
Query: 97 EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-----TECKNHQGYNALH 151
++LK V+ + G+T LHIAA N + VL++ + ++G ALH
Sbjct: 21 KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80
Query: 152 VAV--------GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG---VNVEQC 200
+AV LL +GA ++ T Y N + YG ++ C
Sbjct: 81 IAVINQNVNLVRALLARGASVSAR----ATGSVFHYRPHNL------IYYGEHPLSFAAC 130
Query: 201 VCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAV 250
V G + V+L++E GA++ A+D L T L I +
Sbjct: 131 V------------------GSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 31/181 (17%)
Query: 212 LLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG------ 265
LLL N Q KL+ +G VH + + +TAL IA + +L+ L++
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 266 ACVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNT 325
L + LH+A+ Q++ +V+ T + P
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP------------ 114
Query: 326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
L+Y+G + PL A + V LL++HGAD+ D+ G LHI
Sbjct: 115 ---HNLIYYGEH----------PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Query: 386 V 386
+
Sbjct: 162 I 162
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
N R+ Y +TPL +A +A++ L+E+ +++ + G L AV+ + L I E+LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
+NVN+ D G+T L ++ + LL + A++N + + +G TPL +A +
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL----EGETPLIVASKY 144
Query: 524 NNEAVINKLLDYNPDLDVKDKNGNTA 549
++ KLL+ D+ +D G TA
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTA 170
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
KD E T L A+++ L+ G++VN D G+ PL ++ GY + L+ H
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
GANVN RN +TPL +A + + LLE GA + AR G
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LI 397
N +D N+TPL +A +A+ LV++ + D +G L AV+N + I L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 398 RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457
G+NVN ++ KTPL ++ +LLEHGA
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA----------------------- 125
Query: 458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
NVN + G T L +A K I++ LL ADI+A+ ++G+
Sbjct: 126 ----------NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL 168
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL G+NVN KD KTPL +I + L++HGA+VN + +G+ PL +A + G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 391 VAI-PNLIRHGANVNARN 407
I L+ GA+++AR+
Sbjct: 147 SEIVKKLLELGADISARD 164
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 37/159 (23%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLH 279
G +NA+ ++E + KD TAL AV++ L I E LL G+ V++ F
Sbjct: 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF------ 99
Query: 280 LAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
+ K PL + + F LL HGANVN
Sbjct: 100 -----------------------------SGKTPLMWSIIFGYSEMSYF--LLEHGANVN 128
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378
++ E +TPL +A + + V L++ GAD++ D G
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV-----GI---LL 158
N ++ TPL +A G + L+++ E K+ +G AL AV GI LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR 218
KG+++N ++ GKT + L++G NV ++ G L+ +
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-----NDRNLEGETPLIVASK 143
Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
G VK +LE GA++ A+D TA A G ++++ +
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G+T L + ++K E L + +NVN K+ G TPL + G +M L++HGA
Sbjct: 68 GSTAL--IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
+ +N +G L VA V LL GADI+ + G TA A I++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 190 F 190
F
Sbjct: 186 F 186
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 45 DGKSCLHIAATKNIRL--VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
+G + L I A KN RL LL +VN D G T L + SI L +
Sbjct: 67 EGSTAL-IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL--MWSIIFGYSEMSYFLLEH 123
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNA 149
ANVN +N EG+TPL +A++ G ++V+ L++ GA ++ G A
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
G L+ V+N + +L KG+NV+ KD KT L ++ G+ ++ FLL+HGA
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 268 VDSLQFI-HSPLHLAIEKQHIAIVQ 291
V+ +PL +A + IV+
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVK 151
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR--L 60
++VN + G T +I+ + ++ L E GAN+ND +G++ L I A+K R +
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPL-IVASKYGRSEI 149
Query: 61 VRLLLEYNVDVNAVDNLGNT 80
V+ LLE D++A D G T
Sbjct: 150 VKKLLELGADISARDLTGLT 169
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
N D + RT L +A + ++ L+ N + K I +G T L AV++N +
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----EGSTALIWAVKNNRLGIA 84
Query: 530 NKLLDYNPDLDVKDKNGNTALHPS 553
KLL +++ KD +G T L S
Sbjct: 85 EKLLSKGSNVNTKDFSGKTPLMWS 108
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 91 RDPTAV-EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN------ 143
RD V EIL+ V+ + EG+TPL+IA + ++ + LID GA +N
Sbjct: 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75
Query: 144 --HQGYNALHVAVGILLRKGA-DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQC 200
+ G + +L+ D+N N +G A A E + ++L L+ G +
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG---RED 132
Query: 201 VCHENVKHGGQLLLHLV--RNG---HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL 255
+ +N G L+ V R G +Q+ VKL++E GA+ KD +TA+D A + G+
Sbjct: 133 IDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 256 KIVEFL 261
+I + L
Sbjct: 192 EISKIL 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP-LHIAVQNGYVAIPNL 396
V+ D E TPL+IA+ + + L+ GAD+N+ ++ P L+ Q + +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 397 IRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMH 454
++H ++N N+Y L A E+ ++ + LLE G + +D + G L AV +
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 455 N-----LSIVEQLLKFKANVNSSDQFGRTVLHLA 483
IV+ L++ A+ + D GRT + A
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
V+ +D +G PL+IAV N + I LI GA++N +N + +P A Q L Y+
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 430 LEHGA-QVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKANVNSSDQFGRTVLHLAVKIQ 487
L+H ++ + G + L A E ++ V+ LL+ + +++ + FG T L AV
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV--- 148
Query: 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
G+ +G L+ + ++ L++ D +KD +G
Sbjct: 149 ---------------------GLREG-NQLY-------QDIVKLLMENGADQSIKDNSGR 179
Query: 548 TAL 550
TA+
Sbjct: 180 TAM 182
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLL 64
V+ + EG T A+ ++ IAK L +RGA+IN L+ A ++ +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 65 LEYNV-DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL--HIAA 121
L++ D+N + G L A D + +L+ R +++ +N G T L +
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL-LLEDGREDIDFQNDFGYTALIEAVGL 150
Query: 122 RTGN--YK-MVRVLIDHGAHTECKNHQGYNALHVA 153
R GN Y+ +V++L+++GA K++ G A+ A
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Query: 225 VKLILEKGA-NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAI 282
VK IL+ V D T L+IAV + ++I + L+D GA ++ I SP A
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 283 EKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG-ANVNVK 341
+ I+ + N L+ + + K LL G +++ +
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNA----LIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 342 DDENKTPLHIAIE----SQCW-DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL 396
+D T L A+ +Q + D V LL+++GAD ++ DN G+ + A Q GY I +
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 397 I 397
+
Sbjct: 197 L 197
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 25/97 (25%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
V IL N A+VN K+K+G TPLH+AAR G+ ++V V
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV------------------------ 53
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192
LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 54 -LLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADVN D G PLH+A + G++ I L++ GA+VNA++K+ KT I+
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Query: 418 VEQKN 422
++ N
Sbjct: 76 IDNGN 80
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+VN KD + TPLH+A + V +L+K GADVN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 376 NQGQMPLHIAVQNGYVAIPNLIRHGA 401
G+ I++ NG + +++ A
Sbjct: 66 KFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V+A+ + G PL++A +L IVE LLK A+VN+ D+FG+T +++ N
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 489 VAILECL 495
+ E L
Sbjct: 81 EDLAEIL 87
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V+AKD+ T L +A GHL+IVE LL GA V+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 270 SL-QFIHSPLHLAIE 283
+ +F + ++I+
Sbjct: 63 AQDKFGKTAFDISID 77
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+VNA++K TPLH+A + ++ + LL+ GA V+A+ + GK I+++ N
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 456 LSIVEQLLK 464
+ E L K
Sbjct: 81 EDLAEILQK 89
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 214 LHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
LHL R GH V+++L+ GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 475 FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G+ +L A Q+ + L+ N AD+NAK GYTPLHLA + ++ LL
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLK 56
Query: 535 YNPDLDVKDKNGNTALHPS 553
D++ +DK G TA S
Sbjct: 57 AGADVNAQDKFGKTAFDIS 75
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
GK L A VR+L+ DVNA D G T LH A + VE+L A+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA--REGHLEIVEVLLKAGAD 60
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVL 132
VN ++K G T I+ GN + +L
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+VN+ D+ G T LHLA + ++ I+E LL AD+NA+ G T
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----GKTAFD 73
Query: 519 LAVESNNE 526
+++++ NE
Sbjct: 74 ISIDNGNE 81
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++N DG + LH+AA + + +V +LL+ DVNA D
Sbjct: 8 EAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Query: 77 LGNTVLHTVASIKTRDPTAVEILK 100
G T SI + EIL+
Sbjct: 67 FGKTAFDI--SIDNGNEDLAEILQ 88
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIA 53
ADVNA +K+G T A I ++L + GA++N D F GK+ I+
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF---GKTAFDIS 75
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
K N + + LL GAN ++KD +H A + D + L++ ADVN+ DN+G +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
PLH+A + G++ + L++H A NV RN T +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
G++ L + N + R LL + + D GN V+H A D ++ L +A+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLD--TLQTLLEFQAD 95
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-HTECKNHQGYNALHVA 153
VNI++ EG+ PLH+AA+ G+ ++V L+ H A + +NH+G A +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 27 IAKLLAERGANINDPFPD----DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTV 81
IA+ L RGAN PD G + +H AA + ++ LLE+ DVN DN GN
Sbjct: 52 IARRLLLRGAN-----PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 82 LHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
LH A K VE L K +NV +N +GDT +A G ++V ++ +GA
Sbjct: 107 LHLAA--KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
+ +T L + ++ N LL GA D + + G ++ A L ++ LL+F+A+
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
VN D G LHLA K ++ ++E L+ + A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
FG+TA Q+ ++ N L G N + + G ++ R G + ++ +L
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGNAVIHDAARAGFLDTLQTLL 90
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
E A+V+ +D L +A + GHL++VEFL+ H A
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ GAN + +++ +H A + L LLE A V+ G PL++A + +
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 456 LSIVEQLLKFKA-NVNSSDQFGRTVLHLA 483
L +VE L+K A NV + G T LA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
L A + ++ L LL++ V+A+ G+ L + +++ N I +LL AN + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ G V+H A + + L+ LL +AD+N + +G PLHLA + + V+ L+
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN----EGNLPLHLAAKEGHLRVVEFLV 123
Query: 534 DYN-PDLDVKDKNGNTA 549
+ ++ ++ G+TA
Sbjct: 124 KHTASNVGHRNHKGDTA 140
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L A +L + LL+ NVN+ + FGRT L + +K+ N I LL+ A+ + K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+G +H A + + LL++ D++++D GN LH
Sbjct: 68 RTG----NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L +++ G+ + +L +GAN KD+ + A G L ++ LL+ A V+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQ 291
+ PLHLA ++ H+ +V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVE 120
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 46/162 (28%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G T L + + GN ++ R L+ GA+ + K+ G +H A + LL AD+
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N+E+N G +A + + +E +K+ NV GH+N
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKH--------TASNV-------------GHRN- 134
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H D C D+A +G ++V + +GA
Sbjct: 135 -----------HKGDTAC----DLARLYGRNEVVSLMQANGA 161
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
+PLH + + + + L+ GA +NV + + TPLH+A D V L+++ AD+
Sbjct: 36 SPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 372 NVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIA 417
N ++ G +PLH A G + +L+ +GA V+ NKY + P+ A
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PN 395
++N DD +PLH A V +L+ GA +NV++ PLH+A +G+ I
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+++ A++NA N++ PLH A L+ +GA V + G+ P+ A
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 145
Query: 456 LSIVEQLLKFKANVN 470
+ E+ K N+N
Sbjct: 146 ELLRERAEKMGQNLN 160
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
D+N D+ G PLH A + G A+ LI GA +N N+ TPLH+A + +
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
LL++ A ++A + G PL+ A + E L+ A V+ +++G
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LVR 62
D+N + G + A ++ + ++L RGA IN D + LH+AA+ R +V+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQ 84
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
LL+Y D+NAV+ GN LH A +D A E L N A V+I NK G+ P+ A
Sbjct: 85 KLLQYKADINAVNEHGNVPLH-YACFWGQDQVA-EDLVANGALVSICNKYGEMPVDKA 140
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
++N + + +PLH A + + + L+ GA+++ + PL++A + IV++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
LL++KA++N+ ++ G LH A + E L+ N A
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 61 VRLLLEYNV-DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
VRL L+ D+N D+ G + LH + + VE+L A +N+ N+ DTPLH+
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHW--ACREGRSAVVEMLIMRGARINVMNRGDDTPLHL 73
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI--------LLRKGADINVENNFG 171
AA G+ +V+ L+ + A N G LH A L+ GA +++ N +G
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 172 KTAFQMA 178
+ A
Sbjct: 134 EMPVDKA 140
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
++N D G + LH A + A++E L++ A IN TPLHLA +
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRD 81
Query: 528 VINKLLDYNPDLDVKDKNGNTALH 551
++ KLL Y D++ +++GN LH
Sbjct: 82 IVQKLLQYKADINAVNEHGNVPLH 105
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
HG L R G V++++ +GA ++ ++ T L +A HGH IV+ LL + A
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 268 VDSL-QFIHSPLHLA 281
++++ + + PLH A
Sbjct: 93 INAVNEHGNVPLHYA 107
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G PL+ A ++VE L+ A +N ++ T LHLA + I++ LL KADI
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
NA G PLH A + V L+
Sbjct: 94 NAVNEH----GNVPLHYACFWGQDQVAEDLV 120
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 121 ARTGNYKMVRVLIDHGAH--TECKNHQGYNALHVA--------VGILLRKGADINVENNF 170
R GN VR+ +D+ + + +H G++ LH A V +L+ +GA INV N
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARINVMNRG 66
Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
T +A + ++ L+Y ++ H NV
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV 102
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
+PLH + + + + L+ GA +NV + + TPLH+A D V L+++ AD+
Sbjct: 41 SPLHWACREGR--SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 372 NVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIA 417
N ++ G +PLH A G + +L+ +GA V+ NKY + P+ A
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI-PN 395
++N DD +PLH A V +L+ GA +NV++ PLH+A +G+ I
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+++ A++NA N++ PLH A L+ +GA V + G+ P+ A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
Query: 456 LSIVEQLLKFKANVN 470
+ E+ K N+N
Sbjct: 151 ELLRERAEKMGQNLN 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
D+N D+ G PLH A + G A+ LI GA +N N+ TPLH+A + +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
LL++ A ++A + G PL+ A + E L+ A V+ +++G + A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA----- 145
Query: 489 VAILECLLVNKADINAKIISGI------WKGYT 515
A L LL +A+ + ++ I WKG T
Sbjct: 146 KAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LVR 62
D+N + G + A ++ + ++L RGA IN D + LH+AA+ R +V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQ 89
Query: 63 LLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
LL+Y D+NAV+ GN LH A +D A E L N A V+I NK G+ P+ A
Sbjct: 90 KLLQYKADINAVNEHGNVPLH-YACFWGQDQVA-EDLVANGALVSICNKYGEMPVDKA 145
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
++N D G + LH A + A++E L++ A IN TPLHLA +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD----TPLHLAASHGHRD 86
Query: 528 VINKLLDYNPDLDVKDKNGNTALH 551
++ KLL Y D++ +++GN LH
Sbjct: 87 IVQKLLQYKADINAVNEHGNVPLH 110
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 61 VRLLLEYNV-DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
VRL L+ D+N D+ G + LH + + VE+L A +N+ N+ DTPLH+
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHW--ACREGRSAVVEMLIMRGARINVMNRGDDTPLHL 78
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI--------LLRKGADINVENNFG 171
AA G+ +V+ L+ + A N G LH A L+ GA +++ N +G
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 172 KTAFQMA 178
+ A
Sbjct: 139 EMPVDKA 145
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
HG L R G V++++ +GA ++ ++ T L +A HGH IV+ LL + A
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 268 VDSL-QFIHSPLHLA 281
++++ + + PLH A
Sbjct: 98 INAVNEHGNVPLHYA 112
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 121 ARTGNYKMVRVLIDHGAH--TECKNHQGYNALHVA--------VGILLRKGADINVENNF 170
R GN VR+ +D+ + + +H G++ LH A V +L+ +GA INV N
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71
Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
T +A + ++ L+Y ++ H NV
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV 107
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
K N + + LL GAN ++KD +H A + D + L+++ ADVN+ DN+G +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
PLH+A + G++ + L++H A NV RN T +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
G++ L + N + R LL + + D G V+H A D ++ L N+A+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD--TLQTLLENQAD 95
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-HTECKNHQGYNALHVA 153
VNI++ EG+ PLH+AA+ G+ ++V L+ H A + +NH+G A +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 27 IAKLLAERGANINDPFPD----DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTV 81
IA+ L RGAN PD G + +H AA + ++ LLE DVN DN GN
Sbjct: 52 IARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 82 LHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
LH A K VE L K +NV +N +GDT +A G ++V ++ +GA
Sbjct: 107 LHLAA--KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
L A + ++ L LL++ V+A+ G+ L + +++ N I +LL AN + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ G V+H A + + L+ LL N+AD+N + +G PLHLA + + V+ L+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN----EGNLPLHLAAKEGHLRVVEFLV 123
Query: 534 DYN-PDLDVKDKNGNTA 549
+ ++ ++ G+TA
Sbjct: 124 KHTASNVGHRNHKGDTA 140
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
FG+TA Q+ ++ N L G N + + G ++ R G + ++ +L
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGFAVIHDAARAGFLDTLQTLL 90
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
E A+V+ +D L +A + GHL++VEFL+ H A
Sbjct: 91 ENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ GAN + +++ +H A + L LLE+ A V+ G PL++A + +
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
Query: 456 LSIVEQLLKFKA-NVNSSDQFGRTVLHLA 483
L +VE L+K A NV + G T LA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L A +L + LL+ NVN+ + FGRT L + +K+ N I LL+ A+ + K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+G + +H A + + LL+ D++++D GN LH
Sbjct: 68 RTG----FAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLH 108
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
+ +T L + ++ N LL GA D + + G ++ A L ++ LL+ +A+
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
VN D G LHLA K ++ ++E L+ + A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L +++ G+ + +L +GAN KD+ + A G L ++ LL++ A V+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN 97
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQ 291
+ PLHLA ++ H+ +V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVE 120
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
K N + + LL GAN ++KD +H A + D + L++ ADVN+ DN+G +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
PLH+A + G++ + L++H A NV RN T +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
G++ L + N + R LL + + D G V+H A D ++ L +A+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD--TLQTLLEFQAD 95
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-HTECKNHQGYNALHVA 153
VNI++ EG+ PLH+AA+ G+ ++V L+ H A + +NH+G A +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 27 IAKLLAERGANINDPFPD----DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTV 81
IA+ L RGAN PD G + +H AA + ++ LLE+ DVN DN GN
Sbjct: 52 IARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 82 LHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
LH A K VE L K +NV +N +GDT +A G ++V ++ +GA
Sbjct: 107 LHLAA--KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
+ +T L + ++ N LL GA D + + G ++ A L ++ LL+F+A+
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
VN D G LHLA K ++ ++E L+ + A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
FG+TA Q+ ++ N L G N + + G ++ R G + ++ +L
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGFAVIHDAARAGFLDTLQTLL 90
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
E A+V+ +D L +A + GHL++VEFL+ H A
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L A +L + LL+ NVN+ + FGRT L + +K+ N I LL+ A+ + K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+G + +H A + + LL++ D++++D GN LH
Sbjct: 68 RTG----FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
L A + ++ L LL++ V+A+ G+ L + +++ N I +LL AN + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ G V+H A + + L+ LL +AD+N + +G PLHLA + + V+ L+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN----EGNLPLHLAAKEGHLRVVEFLV 123
Query: 534 DYN-PDLDVKDKNGNTA 549
+ ++ ++ G+TA
Sbjct: 124 KHTASNVGHRNHKGDTA 140
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ GAN + +++ +H A + L LLE A V+ G PL++A + +
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 456 LSIVEQLLKFKA-NVNSSDQFGRTVLHLA 483
L +VE L+K A NV + G T LA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G T L + + GN ++ R L+ GA+ + K+ G+ +H A + LL AD+
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N+E+N G +A + + +E +K+ NV GH+N
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKH--------TASNV-------------GHRN- 134
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H D C D+A +G ++V + +GA
Sbjct: 135 -----------HKGDTAC----DLARLYGRNEVVSLMQANGA 161
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L +++ G+ + +L +GAN KD+ + A G L ++ LL+ A V+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQ 291
+ PLHLA ++ H+ +V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVE 120
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
K N + + LL GAN ++KD +H A + D + L++ ADVN+ DN+G +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
PLH+A + G++ + L++H A NV RN T +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
G++ L + N + R LL + + D G V+H A D ++ L +A+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD--TLQTLLEFQAD 95
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-HTECKNHQGYNALHVA 153
VNI++ EG+ PLH+AA+ G+ ++V L+ H A + +NH+G A +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 27 IAKLLAERGANINDPFPD----DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTV 81
IA+ L RGAN PD G + +H AA + ++ LLE+ DVN DN GN
Sbjct: 52 IARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 82 LHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
LH A K VE L K +NV +N +GDT +A G ++V ++ +GA
Sbjct: 107 LHLAA--KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
+ +T L + ++ N LL GA D + + G ++ A L ++ LL+F+A+
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
VN D G LHLA K ++ ++E L+ + A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
FG+TA Q+ ++ N L G N + + G ++ R G + ++ +
Sbjct: 36 GFGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGFAVIHDAARAGFLDTLQTL 89
Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
LE A+V+ +D L +A + GHL++VEFL+ H A
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L A +L + LL+ NVN+ + FGRT L + +K+ N I LL+ A+ + K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+G + +H A + + LL++ D++++D GN LH
Sbjct: 68 RTG----FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
L A + ++ L LL++ V+A+ G+ L + +++ N I +LL AN + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ G V+H A + + L+ LL +AD+N + +G PLHLA + + V+ L+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN----EGNLPLHLAAKEGHLRVVEFLV 123
Query: 534 DYN-PDLDVKDKNGNTA 549
+ ++ ++ G+TA
Sbjct: 124 KHTASNVGHRNHKGDTA 140
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ GAN + +++ +H A + L LLE A V+ G PL++A + +
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 456 LSIVEQLLKFKA-NVNSSDQFGRTVLHLA 483
L +VE L+K A NV + G T LA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 46/162 (28%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G T L + + GN ++ R L+ GA+ + K+ G+ +H A + LL AD+
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N+E+N G +A + + +E +K+ + NV GH+N
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--------NV-------------GHRN- 134
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H D C D+A +G ++V + +GA
Sbjct: 135 -----------HKGDTAC----DLARLYGRNEVVSLMQANGA 161
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L +++ G+ + +L +GAN KD+ + A G L ++ LL+ A V+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQ 291
+ PLHLA ++ H+ +V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVE 120
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
+ HGADVN + N GQ PL N +A L+++GANVN + + PLH A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
+ L+ GA + AR G+DPL IA+E N IV +L K + + Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 332 LYHGANVNV--KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
L HGA+VN +N TPL A + A L+++GA+VN D+ G+ PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 390 YVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
+ + L ++ GA++ AR+ + PL IA+E N + L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 395 NLIRHGANVNARNKYA--KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
+ + HGA+VN N TPL A ++ A +LL++GA V+ G+ PL+ A
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
+ + + LK A++ + D GR L +A++ N I+ L + K
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 307 GPTNKAPLHLVVQRKSWNTTM-FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
G N PL +Q + N+ + + LL +GANVN D + PLH A L +
Sbjct: 232 GQDNATPL---IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 366 KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
K GAD+ D++G+ PL IA++ I L+R
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
L HGA V+ G+D PL A ++L E LL+ ANVN +D GR LH A +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
+ L CL + + AD+ A+ +G PL +A+E+ N ++ L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 65 LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
L + DVN V+ + + + A E L N ANVN + G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+ + + + GA ++ +G + L +A+
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 158 LRKGADINVENNFGKTAFQM--AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
L GAD+N N A + A + A E L+ G NV Q ++ G L H
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA---DSAGRG--PLHH 274
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GH L L++GA++ A+D + L IA+E + IV L
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNV 69
G LF+ + P GA++N + D+ + A ++ LL+
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 70 DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
+VN D+ G LH A+I A LK A++ ++ EG PL IA T N +V
Sbjct: 260 NVNQADSAGRGPLHH-ATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 130 RVL 132
+L
Sbjct: 318 TLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
+ HGADVN + N GQ PL N +A L+++GANVN + + PLH A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
+ L+ GA + AR G+DPL IA+E N IV +L K + + Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 332 LYHGANVNV--KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
L HGA+VN +N TPL A + A L+++GA+VN D+ G+ PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 390 YVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
+ + L ++ GA++ AR+ + PL IA+E N + L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 395 NLIRHGANVNARNKYA--KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
+ + HGA+VN N TPL A ++ A +LL++GA V+ G+ PL+ A
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
+ + + LK A++ + D GR L +A++ N I+ L + K
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 307 GPTNKAPLHLVVQRKSWNTTM-FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
G N PL +Q + N+ + + LL +GANVN D + PLH A L +
Sbjct: 232 GQDNATPL---IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 366 KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
K GAD+ D++G+ PL IA++ I L+R
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
L HGA V+ G+D PL A ++L E LL+ ANVN +D GR LH A +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
+ L CL + + AD+ A+ +G PL +A+E+ N ++ L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 65 LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
L + DVN V+ + + + A E L N ANVN + G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+ + + + GA ++ +G + L +A+
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 158 LRKGADINVENNFGKTAFQM--AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
L GAD+N N A + A + A E L+ G NV Q ++ G L H
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA---DSAGRG--PLHH 274
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GH L L++GA++ A+D + L IA+E + IV L
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNV 69
G LF+ + P GA++N + D+ + A ++ LL+
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 70 DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
+VN D+ G LH A+I A LK A++ ++ EG PL IA T N +V
Sbjct: 260 NVNQADSAGRGPLHH-ATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 130 RVL 132
+L
Sbjct: 318 TLL 320
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 45 DGKSCLHIAATKNIR-LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
DG + L +AA + ++ L+ + DVNAVD+LG + LH A++ A +L N
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN--VDAAVVLLKNG 71
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
AN +++N + +TPL +AAR G+Y+ +VL+DH A+ + +H
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDH 112
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH-IAVQNGYVAIPNLIRHGAN 402
+ TPL +A + L+ ADVN +D+ G+ LH A N A L+++GAN
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+ +N +TPL +A + + LL+H A D + + P IA E + IV L
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
M + L+ A+VN DD K+ LH A DA +L+K+GA+ ++ +N+ + PL +A
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 89
Query: 387 QNG-YVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
+ G Y L+ H AN + + + P IA E+
Sbjct: 90 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
+DAR G PL +A + ++E L+ A+VN+ D G++ LH A + NV
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543
LL N A N + + K TPL LA + LLD+ + D+ D
Sbjct: 65 VVLLKNGA--NKDMQNN--KEETPLFLAAREGSYETAKVLLDHFANRDITD 111
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 30/163 (18%)
Query: 99 LKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL 158
L+ +++ + +G TPL +AAR M+ LI+
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN------------------------ 36
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR 218
AD+N ++ GK+A A + N A + LK G N + +N K L L R
Sbjct: 37 -SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----QNNKEETPLFL-AAR 90
Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G K++L+ AN D + + DIA E H IV L
Sbjct: 91 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
L D++ + G PL +A + + +LI A+VNA + K+ LH A N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
+ A LL++GA D + + PL++A + + LL AN + +D R
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 115
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 365 VKHGADVNVIDNQGQ---MPL-HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQ 420
+ HGADVN + N GQ PL N +A L+++GANVN + + PLH A
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE--QLLKFKANVNSSDQFG 476
+ L+ GA + AR G+DPL IA+E N IV +L K + + Q G
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 332 LYHGANVNV--KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
L HGA+VN +N TPL A + A L+++GA+VN D+ G+ PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 390 YVAIPNL-IRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
+ + L ++ GA++ AR+ + PL IA+E N + L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 395 NLIRHGANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
+ + HGA+VN N TPL A ++ A +LL++GA V+ G+ PL+ A
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
+ + + LK A++ + D GR L +A++ N I+ L + K
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 307 GPTNKAPLHLVVQRKSWNTTM-FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
G N PL +Q + N+ + + LL +GANVN D + PLH A L +
Sbjct: 232 GQDNATPL---IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 366 KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
K GAD+ D++G+ PL IA++ I L+R
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 430 LEHGAQVDARTQLGKD---PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
L HGA V+ G+D PL A ++L E LL+ ANVN +D GR LH A +
Sbjct: 220 LAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 487 QNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
+ L CL + + AD+ A+ +G PL +A+E+ N ++ L
Sbjct: 279 GHTG-LACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLL 320
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 65 LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
L + DVN V+ + + + A E L N ANVN + G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+ + + + GA ++ +G + L +A+
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 158 LRKGADINVENNFGKTAFQM--AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
L GAD+N N A + A + A E L+ G NV Q ++ G L H
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA---DSAGRG--PLHH 274
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GH L L++GA++ A+D + L IA+E + IV L
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNV 69
G LF+ + P GA++N + D+ + A ++ LL+
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 70 DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
+VN D+ G LH A+I A LK A++ ++ EG PL IA T N +V
Sbjct: 260 NVNQADSAGRGPLHH-ATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIV 317
Query: 130 RVL 132
+L
Sbjct: 318 TLL 320
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 321 KSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380
K N + + LL GAN ++KD +H A + D + L++ ADVN+ DN+G +
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 381 PLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
PLH+A + G++ + L++H A NV RN T +A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN 105
G++ L + N + R LL + + D G V+H A D ++ L +A+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLD--TLQTLLEFQAD 95
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-HTECKNHQGYNALHVA 153
VNI++ EG+ PLH+AA+ G+ ++V L+ H A + +NH+G A +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 27 IAKLLAERGANINDPFPD----DGKSCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNTV 81
IA+ L RGAN PD G + +H AA + ++ LLE+ DVN DN GN
Sbjct: 52 IARRLLLRGAN-----PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 82 LHTVASIKTRDPTAVEIL-KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
LH A K VE L K +NV +N +GDT +A G ++V ++ +GA
Sbjct: 107 LHLAA--KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
+ +T L + ++ N LL GA D + + G ++ A L ++ LL+F+A+
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
VN D G LHLA K ++ ++E L+ + A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L A +L + LL+ NVN+ + FGRT L + +K+ N I LL+ A+ + K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 507 ISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+G + +H A + + LL++ D++++D GN LH
Sbjct: 68 RTG----FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLH 108
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL 229
FG+TA Q+ ++ N L G N + + G ++ R G + ++ +L
Sbjct: 37 FGRTALQV-MKLGNPEIARRLLLRGANPDL-----KDRTGFAVIHDAARAGQLDTLQTLL 90
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
E A+V+ +D L +A + GHL++VEFL+ H A
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
L A + ++ L LL++ V+A+ G+ L + +++ N I +LL AN + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ G V+H A + + L+ LL +AD+N + +G PLHLA + + V+ L+
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN----EGNLPLHLAAKEGHLRVVEFLV 123
Query: 534 DYN-PDLDVKDKNGNTA 549
+ ++ ++ G+TA
Sbjct: 124 KHTASNVGHRNHKGDTA 140
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ GAN + +++ +H A + L LLE A V+ G PL++A + +
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
Query: 456 LSIVEQLLKFKA-NVNSSDQFGRTVLHLA 483
L +VE L+K A NV + G T LA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G T L + + GN ++ R L+ GA+ + K+ G+ +H A + LL AD+
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N+E+N G +A + + +E +K+ NV GH+N
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKH--------TASNV-------------GHRN- 134
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H D C D+A +G ++V + +GA
Sbjct: 135 -----------HKGDTAC----DLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ L +++ G+ + +L +GAN KD+ + A G L ++ LL+ A V+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN 97
Query: 270 -SLQFIHSPLHLAIEKQHIAIVQ 291
+ PLHLA ++ H+ +V+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVE 120
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 208 HGGQLLLHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H G+ LLH+ G +V+ +L+ G++ + KD T L A HGHLK+VE LL H A
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 267 CVDSLQFIH-SPLHLAIEKQHIAIVQ 291
V++ + + SPLH A + H+ IV+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVK 93
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL +G++ NVKD TPLH A V LL++H A VN Q PLH A +NG+
Sbjct: 29 LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGH 88
Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
V I L+ +GA+ NA N + P+ + ++M +L L E
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDY-TDDESMKSLLLLPE 129
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G T+LH +ASIK P+ VE L N ++ N+K+ G TPLH A G+ K+V +L+ H A
Sbjct: 10 GETLLH-IASIKGDIPS-VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
+Q + LH A V +LL GA N N FG
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
N +T LHIA + ++ ++ YLL++G+ + + G PL+ A +L +VE LL+ K
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
A VN++ + LH A K +V I++ LL A NA I G+
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
+T LHIA +V L+++G+D NV D+ G PLH A +G++ + L++H A VN
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
+PLH A + ++ + LL +GA +A G P+
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 375 DNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
+++G+ LHIA G + ++ L+++G++ N ++ TPLH A ++ + LL+H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFG 476
A V+ PL+ A + ++ IV+ LL + A+ N+ + FG
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 168 NNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLVRN-GHQNAV 225
N+ G+T +A + P++E L+ G + NVK H G LH N GH V
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-------PNVKDHAGWTPLHEACNHGHLKVV 59
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI 274
+L+L+ A V+ + L A ++GH+ IV+ LL +GA +++
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLR 159
N G+T LHIA+ G+ V L+ +G+ K+H G+ LH A V +LL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
A +N + A + + ++L L YG +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 143 NHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
NH+G LH+A V LL+ G+D NV+++ G T A + +EL L++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH- 65
Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHA 237
+ + + L +NGH + VKL+L GA+ +A
Sbjct: 66 ----KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 41/133 (30%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAAT-KNIRLVRLL 64
TN G TL A + P + L + G+ DP D G + LH A ++++V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGS---DPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 65 LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTG 124
L++ +A VN + D+PLH AA+ G
Sbjct: 63 LQH-----------------------------------KALVNTTGYQNDSPLHDAAKNG 87
Query: 125 NYKMVRVLIDHGA 137
+ +V++L+ +GA
Sbjct: 88 HVDIVKLLLSYGA 100
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
G T+LH+A ++ +E LL N +D N K +G +TPLH A + V+ LL +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG----WTPLHEACNHGHLKVVELLLQH 65
Query: 536 NPDLDVKDKNGNTALH 551
++ ++ LH
Sbjct: 66 KALVNTTGYQNDSPLH 81
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADV D G PLH+A +NG++ + L+ GA+VNA++K+ KT I+
Sbjct: 20 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Query: 418 VEQKN 422
++ N
Sbjct: 80 IDNGN 84
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 25/95 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
V IL N A+V K+K G TPLH+AAR G+ ++V+
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK------------------------- 56
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL GAD+N ++ FGKTAF ++ + N E+
Sbjct: 57 LLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 210 GQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G LHL RNGH VKL+LE GA+V+A+D+ KTA DI++++G+ + E L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+V KD TPLH+A + + V LL++ GADVN D
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 376 NQGQMPLHIAVQNG 389
G+ I++ NG
Sbjct: 70 KFGKTAFDISIDNG 83
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
G+ LL R G + V++++ GA+V AKD+ T L +A +GHL++V+ LL+ GA V+
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 270 SL-QFIHSPLHLAIE 283
+ +F + ++I+
Sbjct: 67 AQDKFGKTAFDISID 81
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+V A++K TPLH+A ++ + LLE GA V+A+ + GK I+++ N
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 456 LSIVEQL 462
+ E L
Sbjct: 85 EDLAEIL 91
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V A+ + G PL++A +L +V+ LL+ A+VN+ D+FG+T +++ N
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 489 VAILECL 495
+ E L
Sbjct: 85 EDLAEIL 91
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 475 FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G+ +L A Q+ + L+ N AD+ AK G TPLHLA + + V+ LL+
Sbjct: 6 LGKKLLEAARAGQDDEV-RILMANGADVAAKD----KNGSTPLHLAARNGHLEVVKLLLE 60
Query: 535 YNPDLDVKDKNGNTALHPS 553
D++ +DK G TA S
Sbjct: 61 AGADVNAQDKFGKTAFDIS 79
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 43 PDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
D GK L A VR+L+ DV A D G+T LH A + V++L
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA--RNGHLEVVKLLLEA 61
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
A+VN ++K G T I+ GN + +L
Sbjct: 62 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 18 QAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN 76
+A + Q ++L GA++ +G + LH+AA + +V+LLLE DVNA D
Sbjct: 12 EAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Query: 77 LGNTVLHTVASIKTRDPTAVEILK 100
G T SI + EIL+
Sbjct: 71 FGKTAFDI--SIDNGNEDLAEILQ 92
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+V + D+ G T LHLA + ++ +++ LL AD+NA+ G T
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ----DKFGKTAFD 77
Query: 519 LAVESNNE 526
+++++ NE
Sbjct: 78 ISIDNGNE 85
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V +L+ +GADV D G PLH+A +NG++ + L+ GA+V A++K+ KT I+
Sbjct: 38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 418 VEQKN 422
++ N
Sbjct: 98 IDNGN 102
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 25/95 (26%)
Query: 96 VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
V IL N A+V K+K G TPLH+AAR G+ ++V+
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK------------------------- 74
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELF 190
+LL GAD+ ++ FGKTAF ++ + N E+
Sbjct: 75 LLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 210 GQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G LHL RNGH VKL+LE GA+V A+D+ KTA DI++++G+ + E L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
G+ LL R G + V++++ GA+V AKD+ T L +A +GHL++V+ LL+ GA V
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ +GA+V A++K TPLH+A ++ + LLE GA V A+ + GK I+++ N
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 456 LSIVEQL 462
+ E L
Sbjct: 103 EDLAEIL 109
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
L+ ++ + L+ +GA+V KD TPLH+A + + V LL++ GADV D
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 376 NQGQMPLHIAVQNG 389
G+ I++ NG
Sbjct: 88 KFGKTAFDISIDNG 101
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+ +GA V A+ + G PL++A +L +V+ LL+ A+V + D+FG+T +++ N
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 489 VAILECL 495
+ E L
Sbjct: 103 EDLAEIL 109
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 475 FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
G+ +L A Q+ + L+ N AD+ AK G TPLHLA + + V+ LL+
Sbjct: 24 LGKKLLEAARAGQDDEV-RILMANGADVAAKD----KNGSTPLHLAARNGHLEVVKLLLE 78
Query: 535 YNPDLDVKDKNGNTALHPS 553
D+ +DK G TA S
Sbjct: 79 AGADVXAQDKFGKTAFDIS 97
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
V L+ A+V + D+ G T LHLA + ++ +++ LL AD+ A+ G T
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ----DKFGKTAFD 95
Query: 519 LAVESNNE 526
+++++ NE
Sbjct: 96 ISIDNGNE 103
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 16/192 (8%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K + GA+VN D + TPL +A+ ++ V+ L K GAD + + + LH A N
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 389 ----GYVAIPNLIRHGANVNARNKYAKTPLHIAVE---QKNMSALNYLLEHGAQV----- 436
V N + ++ ++ T L I + +++ L+E GA+V
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 437 ---DARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAIL 492
D+ G+ L+ A ++ N IV+ L+ K +N + D+ G+T + LA + + ++
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 493 ECLLVNKADINA 504
L+ A + A
Sbjct: 330 XYLIQQGASVEA 341
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 26/246 (10%)
Query: 71 VNAVDNLGN-TVLHTVASIKTRDPTAVEILKTNR------ANVNIKNKEGDTPLHIAART 123
VN +D N TVLH +AS + + + I+ + A+VN + + +TPL +A
Sbjct: 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLA 176
Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL-----------LRKGADINVENNFGK 172
++V L GA N +ALH A + DI + G
Sbjct: 177 RRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGX 236
Query: 173 TAFQMAYE---MKNFPAIELFLKYG--VNVEQCVCHENVKHGGQLLLHLVRNGHQNAV-- 225
TA + + +L ++ G V+ + ++ K+ G+ LH +
Sbjct: 237 TALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVK 296
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEK 284
L+ EKG+N +D+ KT + +A + G +++V +L+ GA V+++ H+ LA
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQAN 356
Query: 285 QHIAIV 290
H IV
Sbjct: 357 NHHNIV 362
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 22/228 (9%)
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLH-IAVQNGYVAIPNLIRH-- 399
E ++P+ + E+ A++ + + VN+ID + + LH IA + +LI H
Sbjct: 91 EPESPIKLHTEAAGSYAITEPITRES-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 149
Query: 400 ------GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
GA+VNA + TPL +AV + + YL + GA + + L+ A
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 454 HNLSIVEQLL---KFKANVNSSDQFGRTVLHLAVKIQ---NVAILECLLVNKADIN---- 503
+ L K K ++ D+ G T L + + VA + L+ A ++
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLL-DYNPDLDVKDKNGNTAL 550
A+ S +KG T LH A + +N ++ L+ + + D +D++G T +
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 11 EGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLEYN 68
+G T A S PI K L+ E+G+N D +DGK+ + +AA + I +V L++
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSN-KDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 69 VDVNAVDNLGNTV 81
V AVD +T
Sbjct: 337 ASVEAVDATDHTA 349
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 31 LAERGANINDPFPDDGKSCLHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89
+AE+ +I++P LH AA + N+ +R L+ V VN +D G+T L+
Sbjct: 66 VAEQAESIDNP--------LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 90 TRDPTAVEILKTN-RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
+D VE L T +N +NK GDT LH AA G +V++L+ GA T+ +N
Sbjct: 118 HKD--IVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 413 PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNS 471
PLH A ++ N+S L L++ V+ + G LY A + IVE L + +N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 472 SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
++ G T LH A I++ LL A + + I
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
NY+ E +D +PL+ A + NLS + + L + VN D+ G T L+ A
Sbjct: 64 NYVAEQAESID-------NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG 116
Query: 487 QNVAILECLLV---------NKADINAKIISGIWKGYTPL 517
+ I+E L NK A + + WKGY +
Sbjct: 117 GHKDIVEXLFTQPNIELNQQNKLGDTA-LHAAAWKGYADI 155
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANV--NA 405
PLH A + + + + VN +D G L+ A G+ I + N+ N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
+NK T LH A + + LL GA+ D R
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 114 DTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV---------GILLRKGADI 164
D PLH AA+ GN +R +D+ + G AL+ A + + ++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVE 198
N +N G TA A ++L L G +
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTECKNHQGYNALHVAVGILLRKGADI 164
VNI + G+T LH + N+ +V+ L+D G + +N GY+ + + L+ DI
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
+T Q+ + + N A GQ L L V +G +
Sbjct: 164 -------ETVLQL-FRLGNINA------------------KASQAGQTALMLAVSHGRVD 197
Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
VK +L A+V+ +D TAL A EHGH +I LL +C SL
Sbjct: 198 VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGAC-VDSL-QFIHSPLHLAI-----EKQHIAIVQXXXXX 296
TAL +V H + +V+ LLD G C VD + +SP+ L + I V
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 297 XXXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ 356
G T L L V + + K LL A+VNV+DD+ T L A E
Sbjct: 173 GNINAKASQAGQT---ALMLAVSHGRVD--VVKALLACEADVNVQDDDGSTALMCACEHG 227
Query: 357 CWDAVSLLVK-HGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANV 403
+ LL+ D+++ D G L +A+ G I +++ N+
Sbjct: 228 HKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 33/149 (22%)
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
VN + T LH +V N + LL+ G +VD + + G P+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI-------------- 149
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAV 521
+L A + + D TVL L +INAK G T L LAV
Sbjct: 150 MLTALATLKTQDDI-ETVLQL--------------FRLGNINAK---ASQAGQTALMLAV 191
Query: 522 ESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
V+ LL D++V+D +G+TAL
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTAL 220
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ---GQMPLHIA------VQN 388
VN+ D T LH ++ + V L+ G V +D Q G P+ + Q+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQD 161
Query: 389 GYVAIPNLIRHGANVNARNKYA-KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
+ L R G N+NA+ A +T L +AV + + LL A V+ + G L
Sbjct: 162 DIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
Query: 448 YIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAV 484
A E + I LL +++ +D+ G T L +A+
Sbjct: 221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILE 493
Q++A G PL++AV + +V L A++N + GRT LHLAV+ Q ++LE
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
LL AD A+ ++ G TPL A+ N ++ +LL
Sbjct: 210 LLLKAGADPTAR----MYGGRTPLGSALLRPN-PILARLL 244
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 378 GQMPLHIAVQNGYVAIPNLIRH-GANVN-ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
G PLH+AV + + L+R GA++N +TPLH+AVE + S L LL+ GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
AR G+ PL A+ N I+ +LL+ D
Sbjct: 218 PTARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPED 254
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD-ARTQLGKDPLYIAVEMHNLSIVE 460
+ A N TPLH+AV K+ + L + GA ++ G+ PL++AVE S++E
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
LLK A+ + GRT L A+ N + L + A
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE-NKTPLHIAIESQCWDAVSLLVKHGADV 371
PLH+ V K + M + L GA++N + +TPLH+A+E+Q + LL+K GAD
Sbjct: 161 PLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIR-HGA 401
G+ PL A+ + L+R HGA
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 62/213 (29%)
Query: 44 DDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVD---NLGNTVLHTVASIKTRDPTAVEIL 99
+DG + LH+A ++ + LL ++ +D +LG T LH A + + + VE L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--EASTVEKL 64
Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI-------------------------- 133
A V + + G T LH+A R + VL+
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 134 ---------------------DHGAHTECKNHQGYNALHVAV--------GILLRKGADI 164
D E +N+ G+ LHVAV +L GAD+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 165 N-VENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
N E G+T +A E + +EL LK G +
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 49/188 (26%)
Query: 412 TPLHIAVEQKNMSALNYLLEHGA---QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
T LH+AV ++ L++LL A +D + LG+ L++A + S VE+L A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI------------------ 510
V +++ G T LHLA +++ C+L+ + + S
Sbjct: 71 VLVAERGGHTALHLACRVR-AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 511 -----------------WK---------GYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
W+ G+TPLH+AV + ++ L D DL+ +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 545 N-GNTALH 551
G T LH
Sbjct: 190 TCGRTPLH 197
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ---GQMPLHIAVQNGYVA-IPNLIR 398
++ T LH+A+ Q + L+ A +D Q GQ LH+A G + + L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ--VDAR-TQLGKDPLYIAVEMHN 455
GA V + T LH+A + + LL+ DA T L + H
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 456 LSIVEQLL-----------KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA 504
+ V+ ++ + + + G T LH+AV ++ ++ L AD+N
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 505 KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ G TPLHLAVE+ +V+ LL D + G T L
Sbjct: 187 PEPT---CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 45 DGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVD-NLGNTVLHTVASIKTRDPTAVEILKTN 102
DG + LH+A K+ +VRLL + D+N + G T LH +++ + + +E+L
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL--AVEAQAASVLELLLKA 214
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
A+ + G TPL A N + R+L HGA
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGYNALHVAV------- 154
R + +N +G TPLH+A + +MVR+L D GA + + G LH+AV
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 155 -GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
+LL+ GAD G+T A N L +G
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRL 63
+ A N +G T A++ + +LL + GA++N P P G++ LH+A + ++ L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 64 LLEYNVDVNAVDNLGNTVL 82
LL+ D A G T L
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 101/265 (38%), Gaps = 30/265 (11%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRAN--VNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
G+T LH +A I +P +L + + ++++N G T LH+AA G V L
Sbjct: 9 GDTALH-LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 136 GAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFP--AIELFLKY 193
GA G+ ALH+A + A + ++ + P A + +L
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPR------------PSHPRDASDTYLTQ 115
Query: 194 GVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHG 253
+ H Q +L LE A++ T L +AV H
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AENYDGHTPLHVAVIHK 169
Query: 254 HLKIVEFLLDHGACVDSLQFI--HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNK 311
++V L D GA ++ + +PLHLA+E Q ++++ G +
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG---R 226
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGA 336
PL + R N + + L HGA
Sbjct: 227 TPLGSALLRP--NPILARLLRAHGA 249
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKA-----DINAKIISGIWKGYTPLHLAVESNNEAVIN 530
G T LHLAV Q+ L+ LL A D+ + G T LHLA + +
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL------GQTALHLAAILGEASTVE 62
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
KL + V ++ G+TALH
Sbjct: 63 KLYAAGAGVLVAERGGHTALH 83
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 66 EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAARTG 124
++ + + A + G+T LH VA I +D V +L+ A++N G TPLH+A
Sbjct: 146 DWRLQLEAENYDGHTPLH-VAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
++ +L+ GA + + G L A+
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSAL 233
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 435 QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILE 493
Q++A G PL++AV + +V L A++N + GRT LHLAV+ Q ++LE
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
LL AD A+ ++ G TPL A+ N ++ +LL
Sbjct: 210 LLLKAGADPTAR----MYGGRTPLGSALLRPN-PILARLL 244
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 378 GQMPLHIAVQNGYVAIPNLIRH-GANVN-ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
G PLH+AV + + L+R GA++N +TPLH+AVE + S L LL+ GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
AR G+ PL A+ N I+ +LL+ D
Sbjct: 218 PTARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPED 254
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD-ARTQLGKDPLYIAVEMHNLSIVE 460
+ A N TPLH+AV K+ + L + GA ++ G+ PL++AVE S++E
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
LLK A+ + GRT L A+ N + L + A
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE-NKTPLHIAIESQCWDAVSLLVKHGADV 371
PLH+ V K + M + L GA++N + +TPLH+A+E+Q + LL+K GAD
Sbjct: 161 PLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIR-HGA 401
G+ PL A+ + L+R HGA
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 62/213 (29%)
Query: 44 DDGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVD---NLGNTVLHTVASIKTRDPTAVEIL 99
+DG + LH+A ++ + LL ++ +D +LG T LH A + + + VE L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--EASTVEKL 64
Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI-------------------------- 133
A V + + G T LH+A R + VL+
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 134 ---------------------DHGAHTECKNHQGYNALHVAV--------GILLRKGADI 164
D E +N+ G+ LHVAV +L GAD+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 165 N-VENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
N E G+T +A E + +EL LK G +
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 49/188 (26%)
Query: 412 TPLHIAVEQKNMSALNYLLEHGA---QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN 468
T LH+AV ++ L++LL A +D + LG+ L++A + S VE+L A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI------------------ 510
V +++ G T LHLA +++ C+L+ + + S
Sbjct: 71 VLVAERGGHTALHLACRVR-AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 511 -----------------WK---------GYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
W+ G+TPLH+AV + ++ L D DL+ +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 545 N-GNTALH 551
G T LH
Sbjct: 190 TCGRTPLH 197
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ---GQMPLHIAVQNGYVA-IPNLIR 398
++ T LH+A+ Q + L+ A +D Q GQ LH+A G + + L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ--VDAR-TQLGKDPLYIAVEMHN 455
GA V + T LH+A + + LL+ DA T L + H
Sbjct: 67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126
Query: 456 LSIVEQLL-----------KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA 504
+ V+ ++ + + + G T LH+AV ++ ++ L AD+N
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186
Query: 505 KIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ G TPLHLAVE+ +V+ LL D + G T L
Sbjct: 187 PEPT---CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 45 DGKSCLHIAAT-KNIRLVRLLLEYNVDVNAVD-NLGNTVLHTVASIKTRDPTAVEILKTN 102
DG + LH+A K+ +VRLL + D+N + G T LH +++ + + +E+L
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL--AVEAQAASVLELLLKA 214
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
A+ + G TPL A N + R+L HGA
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGYNALHVAV------- 154
R + +N +G TPLH+A + +MVR+L D GA + + G LH+AV
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 155 -GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
+LL+ GAD G+T A N L +G
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRL 63
+ A N +G T A++ + +LL + GA++N P P G++ LH+A + ++ L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 64 LLEYNVDVNAVDNLGNTVL 82
LL+ D A G T L
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 101/265 (38%), Gaps = 30/265 (11%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRAN--VNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
G+T LH +A I +P +L + + ++++N G T LH+AA G V L
Sbjct: 9 GDTALH-LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 136 GAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFP--AIELFLKY 193
GA G+ ALH+A + A + ++ + P A + +L
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPR------------PSHPRDASDTYLTQ 115
Query: 194 GVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHG 253
+ H Q +L LE A++ T L +AV H
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AENYDGHTPLHVAVIHK 169
Query: 254 HLKIVEFLLDHGACVDSLQFI--HSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNK 311
++V L D GA ++ + +PLHLA+E Q ++++ G +
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG---R 226
Query: 312 APLHLVVQRKSWNTTMFKTLLYHGA 336
PL + R N + + L HGA
Sbjct: 227 TPLGSALLRP--NPILARLLRAHGA 249
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKA-----DINAKIISGIWKGYTPLHLAVESNNEAVIN 530
G T LHLAV Q+ L+ LL A D+ + G T LHLA + +
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL------GQTALHLAAILGEASTVE 62
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
KL + V ++ G+TALH
Sbjct: 63 KLYAAGAGVLVAERGGHTALH 83
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 66 EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAARTG 124
++ + + A + G+T LH VA I +D V +L+ A++N G TPLH+A
Sbjct: 146 DWRLQLEAENYDGHTPLH-VAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 125 NYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
++ +L+ GA + + G L A+
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSAL 233
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 397 IRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
+R G N VN ++ TPL A + + +LLE GA + + L +A
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
IV LL+ ++N D G T L AV+ +V +E LL AD+ + S GYT
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS----GYT 137
Query: 516 PLHLAV 521
P+ LAV
Sbjct: 138 PMDLAV 143
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 46/167 (27%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VN ++ G TPL A+ G + VR L++ GA + +AL +A VG+L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
L + DIN+ Y N GG LL+ V
Sbjct: 89 LERDVDINI--------------------------YDWN------------GGTPLLYAV 110
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
R H V+ +L +GA++ + T +D+AV G+ K+ + + +H
Sbjct: 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
VN D+ TPL A + V L++ GAD +++ + + L +A GY I L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ ++N + TPL AV ++ + LL GA + G P+ +AV +
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL-GY 147
Query: 457 SIVEQLLK------FKANVNSSD 473
V+Q+++ F++N+ +D
Sbjct: 148 RKVQQVIENHILKLFQSNLVPAD 170
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 38 INDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVE 97
+N P + +A I VR LLE+ D + + + L ++ D V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD--IVG 86
Query: 98 ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL 157
+L ++NI + G TPL A R + K V L+ GA + GY + +AV +
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 158 LRK 160
RK
Sbjct: 147 YRK 149
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ LL GA+ ++ E ++ L +A D V LL++ D+N+ D G PL AV+
Sbjct: 53 RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112
Query: 389 GYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
+V + L+ GA++ TP+ +AV
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 209 GGQLLLH-LVRNGHQNAVKLILEKGAN-VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G L +H L G + +K L KG N V+ D+ T L A G ++ V FLL+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
P LA E++ L + T
Sbjct: 61 ---------DPHILAKERESA----------------------------LSLASTGGYTD 83
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
+ LL ++N+ D TPL A+ V L+ GAD+ + G P+ +AV
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 387 QNGYVAIPNLIR 398
GY + +I
Sbjct: 144 ALGYRKVQQVIE 155
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 371 VNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
VN D +G PL A G + + L+ GA+ + K ++ L +A + L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV----- 484
LE ++ G PL AV +++ VE LL A++ + G T + LAV
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 485 KIQNV 489
K+Q V
Sbjct: 149 KVQQV 153
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 158 LRKGAD-INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LRKG + +N + G T A + L++G + H K L
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----PHILAKERESALSLA 76
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIH 275
G+ + V L+LE+ +++ D T L AV H+K VE LL GA + + +
Sbjct: 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 276 SPLHLAI 282
+P+ LA+
Sbjct: 137 TPMDLAV 143
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G PL A + V LL++ A+ + + + L LA I+ LL DI
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
N W G TPL AV N+ + LL DL + +G T +
Sbjct: 96 NIYD----WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
+N D+E TPL A V L+++GAD ++ + L +A GY I L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ G +VN + TPL AV ++ + LLE GA T G + + +AV +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 457 SIVE----QLLKFKANV 469
S+ + LLK N+
Sbjct: 149 SVQQVIESHLLKLLQNI 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDP--FPDDGKSCLHIAATKNIR-LV 61
+N T++EG T A Q + + L + GA DP +S L +A +K +V
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA---DPQLLGKGRESALSLACSKGYTDIV 85
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
++LL+ VDVN D G TPL A
Sbjct: 86 KMLLDCGVDVNEYD-----------------------------------WNGGTPLLYAV 110
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK 160
+ K V++L++ GA + GYN++ +AV + R
Sbjct: 111 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADIN 165
+N ++EG TPL AA G +V L+ +GA + LL KG +
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ----------------LLGKGRE-- 70
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
+A +A +++ L GV+V +E +GG LL+ V H V
Sbjct: 71 -------SALSLACSKGYTDIVKMLLDCGVDV-----NEYDWNGGTPLLYAVHGNHVKCV 118
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
K++LE GA+ + ++D+AV G+ + + + H
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQXXXXXX 297
D+ T L A HG + +VEFLL +GA L + S L LA K + IV
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIV------- 85
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
K LL G +VN D TPL A+
Sbjct: 86 -------------------------------KMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
V +L++ GAD + + G + +AV GY ++ +I
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 383 HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
+A Q + + I +N ++ TPL A ++ + +LL++GA +
Sbjct: 9 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 68
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
+ L +A IV+ LL +VN D G T L AV +V ++ LL + AD
Sbjct: 69 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 503 NAKIISGIWKGYTPLHLAV 521
+ S GY + LAV
Sbjct: 129 TIETDS----GYNSMDLAV 143
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
+H Q M L +E ++ + G PL A +++VE LL+ A+
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ + L LA I++ LL D+N W G TPL AV N+ + LL
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYD----WNGGTPLLYAVHGNHVKCVKMLL 122
Query: 534 DYNPDLDVKDKNGNTAL 550
+ D ++ +G ++
Sbjct: 123 ESGADPTIETDSGYNSM 139
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
L+L + E + H + + G L+ +G V+ +L+ GA+ + ++AL +
Sbjct: 17 LYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 75
Query: 249 AVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQ 291
A G+ IV+ LLD G V+ + +PL A+ H+ V+
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL +GA+ + ++ L +A D V +L+ G DVN D G PL AV +
Sbjct: 55 LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114
Query: 391 V-AIPNLIRHGANVNARNKYAKTPLHIAV 418
V + L+ GA+ + +AV
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLAV 143
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G+ + VK++L+ G +V+ D T L AV H+K V+ LL+ GA
Sbjct: 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 397 IRHGANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDA--------RTQ----- 441
++ N + + Y K T LHIA+E++N + + L+E+GA V A +T+
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 442 -LGKDPLYIAVEMHNLSIVEQLLKFK---ANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497
G+ PL +A + L+IV+ LL+ A++++ D G TVLH V++ + + V
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 498 NKADINAKIISGI-------------WKGYTPLHLAVESNNEAVINKLL 533
+ N +I G KG TPL LA S V+ +L
Sbjct: 206 T-SXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 35/178 (19%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG--KDP-------LYIAVEMHN---- 455
Y + + AV Q N L LL + R KDP L + +HN
Sbjct: 12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQND 71
Query: 456 -----LSIVEQLLKFKANVNSS--DQF--GRTVLHLAVKIQNVAILECLLVNKADINA-- 504
L + + K VN+S D + G+T LH+A++ +N ++ L+ N AD+ A
Sbjct: 72 TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAA 131
Query: 505 --------KIISGIWKGYTPLHLAVESNNEAVINKLL--DYNP-DLDVKDKNGNTALH 551
K G + G PL LA +N A++ LL + P D+ +D GNT LH
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ--------------GQMPLHIAVQNG 389
+ +T LHIAIE + V+LLV++GADV N G++PL +A
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 390 YVAIPNLIRHG----ANVNARNKYAKTPLHIAVE 419
+AI + A+++AR+ T LH VE
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 32/164 (19%)
Query: 11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDD-------------GKSCLHIAATKN 57
+G T AI + LL E GA++ D G+ L +AA N
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 58 -IRLVRLLLEYN---VDVNAVDNLGNTVLHTVASIK--TRDPTAVEILKTNRANV----- 106
+ +V+ LL+ + D++A D++GNTVLH + + T D T N +
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL 219
Query: 107 -------NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECK 142
I N++G TPL +AA +G ++ ++ H EC+
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
+N D+E TPL A V L+++GAD ++ + L +A GY I L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ G +VN + TPL AV ++ + LLE GA T G + + +AV +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 457 SIVE----QLLKFKANV 469
S+ + LLK N+
Sbjct: 165 SVQQVIESHLLKLLQNI 181
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDP--FPDDGKSCLHIAATKNIR-LV 61
+N T++EG T A Q + + L + GA DP +S L +A +K +V
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA---DPQLLGKGRESALSLACSKGYTDIV 101
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
++LL+ VDVN D G TPL A
Sbjct: 102 KMLLDCGVDVNEYD-----------------------------------WNGGTPLLYAV 126
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK 160
+ K V++L++ GA + GYN++ +AV + R
Sbjct: 127 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 165
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADIN 165
+N ++EG TPL AA G +V L+ +GA + LL KG +
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ----------------LLGKGRE-- 86
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
+A +A +++ L GV+V +E +GG LL+ V H V
Sbjct: 87 -------SALSLACSKGYTDIVKMLLDCGVDV-----NEYDWNGGTPLLYAVHGNHVKCV 134
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
K++LE GA+ + ++D+AV G+ + + + H
Sbjct: 135 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQXXXXXX 297
D+ T L A HG + +VEFLL +GA L + S L LA K + IV
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIV------- 101
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
K LL G +VN D TPL A+
Sbjct: 102 -------------------------------KMLLDCGVDVNEYDWNGGTPLLYAVHGNH 130
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
V +L++ GAD + + G + +AV GY ++ +I
Sbjct: 131 VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 383 HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
+A Q + + I +N ++ TPL A ++ + +LL++GA +
Sbjct: 25 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 84
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
+ L +A IV+ LL +VN D G T L AV +V ++ LL + AD
Sbjct: 85 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 503 NAKIISGIWKGYTPLHLAV 521
+ S GY + LAV
Sbjct: 145 TIETDS----GYNSMDLAV 159
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
NL GAN +H Q M L +E ++ + G PL A
Sbjct: 12 NLYFQGAN--------SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG 63
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
+++VE LL+ A+ + + L LA I++ LL D+N W G
Sbjct: 64 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD----WNGG 119
Query: 515 TPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
TPL AV N+ + LL+ D ++ +G ++
Sbjct: 120 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
L+L + E + H + + G L+ +G V+ +L+ GA+ + ++AL +
Sbjct: 33 LYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 91
Query: 249 AVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQ 291
A G+ IV+ LLD G V+ + +PL A+ H+ V+
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 135
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL +GA+ + ++ L +A D V +L+ G DVN D G PL AV +
Sbjct: 71 LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 130
Query: 391 V-AIPNLIRHGANVNARNKYAKTPLHIAV 418
V + L+ GA+ + +AV
Sbjct: 131 VKCVKMLLESGADPTIETDSGYNSMDLAV 159
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 145 QGYNALHV----AVGILLRKGADINVEN------NFGKTAFQMAYEMKNFPAIELFLKYG 194
QG N+L V A G +L I EN G T A +E L+ G
Sbjct: 16 QGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 75
Query: 195 VNVEQCVCHENVKHGGQLLLHLV-RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHG 253
+ + + G + L L G+ + VK++L+ G +V+ D T L AV
Sbjct: 76 ADPQL------LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 129
Query: 254 HLKIVEFLLDHGA 266
H+K V+ LL+ GA
Sbjct: 130 HVKCVKMLLESGA 142
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 397 IRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
+R G N VN ++ TPL A + + +LLE GA + + L +A
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
IV LL+ ++N D G T L AV +V +E LL AD+ + S GYT
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADS----GYT 137
Query: 516 PLHLAV 521
P+ LAV
Sbjct: 138 PMDLAV 143
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
VN D+ TPL A + V L++ GAD +++ + + L +A GY I L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ ++N + TPL AV ++ + LL GA + G P+ +AV +
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL-GY 147
Query: 457 SIVEQLLK------FKANVNSSD 473
V+Q+++ F++N+ +D
Sbjct: 148 RKVQQVIENHILKLFQSNLVPAD 170
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 46/167 (27%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGIL 157
VN ++ G TPL A+ G + VR L++ GA + +AL +A VG+L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
L + DIN+ Y N GG LL+ V
Sbjct: 89 LERDVDINI--------------------------YDWN------------GGTPLLYAV 110
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
H V+ +L +GA++ + T +D+AV G+ K+ + + +H
Sbjct: 111 HGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
+ LL GA+ ++ E ++ L +A D V LL++ D+N+ D G PL AV
Sbjct: 53 RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHG 112
Query: 389 GYV-AIPNLIRHGANVNARNKYAKTPLHIAV 418
+V + L+ GA++ TP+ +AV
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 38 INDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVE 97
+N P + +A I VR LLE+ D + + + L ++ D V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD--IVG 86
Query: 98 ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL 157
+L ++NI + G TPL A + K V L+ GA + GY + +AV +
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 158 LRK 160
RK
Sbjct: 147 YRK 149
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 209 GGQLLLH-LVRNGHQNAVKLILEKGAN-VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G L +H L G + +K L KG N V+ D+ T L A G ++ V FLL+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
P LA E++ L + T
Sbjct: 61 ---------DPHILAKERESA----------------------------LSLASTGGYTD 83
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
+ LL ++N+ D TPL A+ V L+ GAD+ + G P+ +AV
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 387 QNGYVAIPNLIR 398
GY + +I
Sbjct: 144 ALGYRKVQQVIE 155
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 371 VNVIDNQGQMPLHIAVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYL 429
VN D +G PL A G + + L+ GA+ + K ++ L +A + L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV----- 484
LE ++ G PL AV +++ VE LL A++ + G T + LAV
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 485 KIQNV 489
K+Q V
Sbjct: 149 KVQQV 153
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 158 LRKGAD-INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LRKG + +N + G T A + L++G + H K L
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----PHILAKERESALSLA 76
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIH 275
G+ + V L+LE+ +++ D T L AV H+K VE LL GA + + +
Sbjct: 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 276 SPLHLAI 282
+P+ LA+
Sbjct: 137 TPMDLAV 143
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
V+ + G PL A + V LL++ A+ + + + L LA I+ L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
L DIN W G TPL AV N+ + LL DL + +G T +
Sbjct: 89 LERDVDINIYD----WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 334 HGANVNVKDDENKTPLHIAIESQC---WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
HG V N PL + ++S +D V ++ D ++ +++G LH AV G+
Sbjct: 27 HGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82
Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
I L++ G NVNA + TPLH A N+ +L+E GA V A T
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVR 62
D + N EGIT A+ + T I K L + G N+N DG + LH AA+ N+++ +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCK 120
Query: 63 LLLEYNVDVNAV 74
L+E V A+
Sbjct: 121 FLVESGAAVFAM 132
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L+ AV + IV+ L++F NVN++D G T LH A NV + + L+ + A + A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 507 ISGIW----------KGYTPLH---LAVESN----NEAVINKLLDYNP----DLDVKDKN 545
S + +GYT V+ N+ VI L DY P +L +K+ +
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193
Query: 546 GNTALH 551
T +H
Sbjct: 194 CMTIIH 199
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
+ + ++Y + ++ +DE T LH A+ + + V LV+ G +VN D+ G PLH A
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 387 QNGYVAIPN-LIRHGANVNA 405
V + L+ GA V A
Sbjct: 112 SCNNVQVCKFLVESGAAVFA 131
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF 273
GH VK +++ G NV+A D T L A ++++ +FL++ GA V ++ +
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 38 INDP-FP-DDGKSCLHIA-ATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVAS 87
++DP P D+G + LH A + +V+ L+++ V+VNA D+ G T LH AS
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 67 YNVDVNAVDN-LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN 125
Y VD ++ N G T LH + V+ L NVN + +G TPLH AA N
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTE--IVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 126 YKMVRVLIDHGA 137
++ + L++ GA
Sbjct: 116 VQVCKFLVESGA 127
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
++ N EG T LH A G+ ++V+ L+ G + + G+ LH A + V
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 167 ENNFGKTAFQMAY 179
E+ G F M Y
Sbjct: 124 ES--GAAVFAMTY 134
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
+N D+E TPL A V L+++GAD ++ + L +A GY I L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ G +VN + TPL AV ++ + LLE GA T G + + +AV +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 457 SI 458
S+
Sbjct: 147 SV 148
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDP--FPDDGKSCLHIAATKNIR-LV 61
+N T++EG T A Q + + L + GA DP +S L +A +K +V
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA---DPQLLGKGRESALSLACSKGYTDIV 83
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
++LL+ VDVN D G TPL A
Sbjct: 84 KMLLDCGVDVNEYD-----------------------------------WNGGTPLLYAV 108
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK 160
+ K V++L++ GA + GYN++ +AV + R
Sbjct: 109 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 147
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 30/159 (18%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADIN 165
+N ++EG TPL AA G +V L+ +GA + LL KG +
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ----------------LLGKGRE-- 68
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
+A +A +++ L GV+V +E +GG LL+ V H V
Sbjct: 69 -------SALSLACSKGYTDIVKMLLDCGVDV-----NEYDWNGGTPLLYAVHGNHVKCV 116
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
K++LE GA+ + ++D+AV G+ + + + H
Sbjct: 117 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 39/161 (24%)
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQXXXXXX 297
D+ T L A HG + +VEFLL +GA L + S L LA K + IV
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIV------- 83
Query: 298 XXXXXXXTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
K LL G +VN D TPL A+
Sbjct: 84 -------------------------------KMLLDCGVDVNEYDWNGGTPLLYAVHGNH 112
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
V +L++ GAD + + G + +AV GY ++ +I
Sbjct: 113 VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 383 HIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
+A Q + + I +N ++ TPL A ++ + +LL++GA +
Sbjct: 7 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 66
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
+ L +A IV+ LL +VN D G T L AV +V ++ LL + AD
Sbjct: 67 RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 503 NAKIISGIWKGYTPLHLAV 521
+ S GY + LAV
Sbjct: 127 TIETDS----GYNSMDLAV 141
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
+H Q M L +E ++ + G PL A +++VE LL+ A+
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ + L LA I++ LL D+N W G TPL AV N+ + LL
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYD----WNGGTPLLYAVHGNHVKCVKMLL 120
Query: 534 DYNPDLDVKDKNGNTAL 550
+ D ++ +G ++
Sbjct: 121 ESGADPTIETDSGYNSM 137
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
L+L + E + H + + G L+ +G V+ +L+ GA+ + ++AL +
Sbjct: 15 LYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 73
Query: 249 AVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQ 291
A G+ IV+ LLD G V+ + +PL A+ H+ V+
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 117
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
LL +GA+ + ++ L +A D V +L+ G DVN D G PL AV +
Sbjct: 53 LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 112
Query: 391 V-AIPNLIRHGANVNARNKYAKTPLHIAV 418
V + L+ GA+ + +AV
Sbjct: 113 VKCVKMLLESGADPTIETDSGYNSMDLAV 141
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G+ + VK++L+ G +V+ D T L AV H+K V+ LL+ GA
Sbjct: 78 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V V G DVN G+ PLH A G + I L+ GA++NA +K+ TPL A
Sbjct: 16 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V + ++S + LL GA +T G D L A+E + ++ LL+
Sbjct: 76 VYEGHVSCVKLLLSKGAD---KTVKGPDGL-TALEATDNQAIKALLQ 118
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
A++ +L V+ + +VN + + GR LH A + ILE LL+ ADINA
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 510 IWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
I TPL AV + + + LL D VK +G TAL +
Sbjct: 69 I----TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 385 AVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A++NG + + + + G +VN + + PLH A + + L +LL GA ++A +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
PL AV ++S V+ LL A+ G T L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K + G +VN + + PLH A + + + L+ GAD+N D PL AV
Sbjct: 19 KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 78
Query: 389 GYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
G+V+ + L+ GA+ + T A+E + A+ LL+
Sbjct: 79 GHVSCVKLLLSKGADKTVKGPDGLT----ALEATDNQAIKALLQ 118
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
KG D+N G+ A + +E L G ++ + KH LL V
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-----NAPDKHHITPLLSAVYE 78
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALD 247
GH + VKL+L KGA+ K TAL+
Sbjct: 79 GHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 208 HGGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
GG+ LH + G ++ +L KGA+++A D+ T L AV GH+ V+ LL GA
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
++K D V+ +VN + G PLH AA G +++ L+ GA +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 147 YNAL-------HVA-VGILLRKGADINVENNFGKTAFQ 176
L HV+ V +LL KGAD V+ G TA +
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIA 417
D V V G DVN G+ PLH A G + I L+ GA++NA +K+ TPL A
Sbjct: 21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
V + ++S + LL GA +T G D L A E + ++ LL+
Sbjct: 81 VYEGHVSCVKLLLSKGAD---KTVKGPDGL-TAFEATDNQAIKALLQ 123
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
A++ +L V+ + +VN + + GR LH A + ILE LL+ ADINA
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 510 IWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
I TPL AV + + + LL D VK +G TA +
Sbjct: 74 I----TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K + G +VN + + PLH A + + + L+ GAD+N D PL AV
Sbjct: 24 KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83
Query: 389 GYVA-IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
G+V+ + L+ GA+ + T A E + A+ LL+
Sbjct: 84 GHVSCVKLLLSKGADKTVKGPDGLT----AFEATDNQAIKALLQ 123
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 385 AVQNGYV-AIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
A++NG + + + + G +VN + + PLH A + + L +LL GA ++A +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
PL AV ++S V+ LL A+ G T
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
++K D V+ +VN + G PLH AA G +++ L+ GA +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 147 YNAL-------HVA-VGILLRKGADINVENNFGKTAFQ 176
L HV+ V +LL KGAD V+ G TAF+
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 208 HGGQLLLHLVRN-GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
GG+ LH + G ++ +L KGA+++A D+ T L AV GH+ V+ LL GA
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
KG D+N G+ A + +E L G ++ + KH LL V
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-----NAPDKHHITPLLSAVYE 83
Query: 220 GHQNAVKLILEKGAN 234
GH + VKL+L KGA+
Sbjct: 84 GHVSCVKLLLSKGAD 98
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 348 PLHIAIESQC---WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
PL + ++S +D V ++ D ++ +++G LH AV G+ I L++ G NV
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART 440
NA + TPLH A N+ +L+E GA V A T
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT-KNIRLVR 62
D + N EGIT A+ + T I K L + G N+N DG + LH AA+ N+++ +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCK 120
Query: 63 LLLEYNVDVNAV 74
L+E V A+
Sbjct: 121 FLVESGAAVFAM 132
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
L+ AV + IV+ L++F NVN++D G T LH A NV + + L+ + A + A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 507 ISGIW----------KGYTPLH---LAVESN----NEAVINKLLDYNP----DLDVKDKN 545
S + +GYT V+ N+ VI L DY P +L +K+ +
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193
Query: 546 GNTALH 551
T +H
Sbjct: 194 CMTIIH 199
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
+ + ++Y + ++ +DE T LH A+ + + V LV+ G +VN D+ G PLH A
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 387 QNGYVAIPN-LIRHGANVNA 405
V + L+ GA V A
Sbjct: 112 SCNNVQVCKFLVESGAAVFA 131
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLH 279
GH VK +++ G NV+A D T L A ++++ +FL++ GA V ++ + S +
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY--SDMQ 138
Query: 280 LAIEK 284
A +K
Sbjct: 139 TAADK 143
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 38 INDP-FP-DDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVAS 87
++DP P D+G + LH A +V+ L+++ V+VNA D+ G T LH AS
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 67 YNVDVNAVDN-LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN 125
Y VD ++ N G T LH + V+ L NVN + +G TPLH AA N
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTE--IVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 126 YKMVRVLIDHGA 137
++ + L++ GA
Sbjct: 116 VQVCKFLVESGA 127
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
++ N EG T LH A G+ ++V+ L+ G + + G+ LH A + V
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 167 ENNFGKTAFQMAY 179
E+ G F M Y
Sbjct: 124 ES--GAAVFAMTY 134
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
T + K L+ G NVN D + TPLH A LV+ GA V
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
P + A + + QLL+ + +V++ D+ GRT L + + + L AD++ +
Sbjct: 48 PWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ G G T LH+A V+ L++ D++V+D+ G TAL
Sbjct: 107 DMRG---GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 2 DADVNATNKEGIT--LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NI 58
D DV+A ++ G T LF + S + +LLAE GA+++ G + LH+AA
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+V L+E D+ D G T L A EILKT P+
Sbjct: 125 EVVEALVELGADIEVEDERGLTALE----------LAREILKTTPKG---------NPMQ 165
Query: 119 IAARTGNYKMVRVL 132
R G K++ VL
Sbjct: 166 FGRRIGLEKVINVL 179
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG-H 221
D++ + G+TA + + + L + G +++ H +++ GG LH+
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----HRDMR-GGLTALHMAAGYVR 123
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVE 251
V+ ++E GA++ +D+ TAL++A E
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKT-PLHIA 417
+ V L++ GA+ N ++ G+ P+ + + L+ HGA N + T P+H A
Sbjct: 26 EEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA 85
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+ + L L GA++D R G+ P+ +A E+ + + L
Sbjct: 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V LL GA+ N N++G+ Q+ M + EL L +G C + + +
Sbjct: 28 VRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLT---RPV 82
Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
R G + + ++ GA + +D + +D+A E GH + +L
Sbjct: 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
P + A + + QLL+ + +V++ D+ GRT L + + + L AD++ +
Sbjct: 47 PWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550
+ G G T LH+A V+ L++ D++V+D+ G TAL
Sbjct: 106 DMRG---GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 2 DADVNATNKEGIT--LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NI 58
D DV+A ++ G T LF + S + +LLAE GA+++ G + LH+AA
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+V L+E D+ D G T L A EILKT P+
Sbjct: 124 EVVEALVELGADIEVEDERGLTALE----------LAREILKTTPKG---------NPMQ 164
Query: 119 IAARTGNYKMVRVL 132
R G K++ VL
Sbjct: 165 FGRRIGLEKVINVL 178
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 25/238 (10%)
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP 277
R G + V+ ++E G + +++ TAL +A + G + ++L G V SL P
Sbjct: 29 RKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE-VHSLWHGQKP 87
Query: 278 LHLAIEKQH----IAIVQXXXXXXXXXXX--------------XXTKGPTNKAPLHLVVQ 319
+HLA+ +A+V+ K + LH V
Sbjct: 88 IHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG 147
Query: 320 RKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV-----KHGADVNVI 374
K L+ GA+ KD ++TPL A E + +A+ L K ++
Sbjct: 148 LGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYA 207
Query: 375 DNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ QG LH A+ + + + G +VN + PL+++V + LL+
Sbjct: 208 NKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQ 265
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
DDEN +H+A D V L++ G + + G LH+A + G V +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
V++ + + P+H+AV N + L L GA+ + G+ P + E + E
Sbjct: 77 EVHSL-WHGQKPIHLAV-XANKTDLVVALVEGAK-----ERGQXPESLLNECDEREVNE- 128
Query: 462 LLKFKANVNSSDQFGRTVLHLAVKI--QNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
++V G+T LH V + + + ++ L+ A AK + TPL
Sbjct: 129 ---IGSHVKHCK--GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKA----DETPLXR 179
Query: 520 AVESNNEAVINKLLDYNPD-----LDVKDKNGNTALH 551
A E N ++ D P LD +K GN+ LH
Sbjct: 180 AXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLH 216
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 94 TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
+ + K NR + +N E +H+AAR G VR LI+ G +N G ALH+A
Sbjct: 4 SXTDFPKLNRIKSDDENXEK---IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)
Query: 317 VVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN 376
V RK T + L+ G + +++ T LH+A + C D L G +V+ +
Sbjct: 26 VAARKG-QTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVHSL-W 82
Query: 377 QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
GQ P+H+AV + + GA R + ++ L+ E++ +N + H
Sbjct: 83 HGQKPIHLAVXANKTDLVVALVEGA--KERGQXPESLLNECDERE----VNEIGSHVKHC 136
Query: 437 DARTQL----GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
+T L G P Y L ++ L++ A+ + D+ T L A + +N L
Sbjct: 137 KGQTALHWCVGLGPEY-------LEXIKILVQLGASPTAKDKADETPLXRAXEFRNREAL 189
Query: 493 EC---LLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
+ + +K+ + + +G + LH A+ N E V + ++ D++ +D
Sbjct: 190 DLXXDTVPSKSSLRLDYANK--QGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVP 247
Query: 550 LHPS 553
L+ S
Sbjct: 248 LYLS 251
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID--- 134
G T LH + ++IL A+ K+K +TPL A N + + + D
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 135 --HGAHTECKNHQGYNALHVAVGI--------LLRKGADINVENN 169
+ N QG + LH A+ I + G D+N E+N
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDN 242
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ-NGYVAIPNLIRHG 400
++E T LH AI + V L+ GA+VN D+ G PLH A N V L++HG
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 401 ANVNA----------------RNKYAKTPLHIAVEQKNMSALN 427
A + A R YA ++A +++M +N
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNG-YVAIPNLIRHGANVNARNKYAKTPLHIA 417
+ V VK D + + +G LH A+ Y + LI GANVN+ + + TPLH A
Sbjct: 35 EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
Query: 418 VEQKNMSALNYLLEHGAQVDART 440
+ L++HGA + A T
Sbjct: 95 ASCNDTVICMALVQHGAAIFATT 117
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 50 LHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK 109
L A T + +V+ ++ D + + G T LH +I + + V+ L T ANVN
Sbjct: 26 LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN--AICGANYSIVDFLITAGANVNSP 83
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGA 137
+ G TPLH AA + + L+ HGA
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGA 111
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G L+ A+ N SIV+ L+ ANVNS D G T LH A + I L+ + A I
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 503 NAKIIS 508
A +S
Sbjct: 114 FATTLS 119
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L +V+Q +K + + ++ G T LH A+ N +I++ L+ A++N+ G+T
Sbjct: 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS----HGWT 89
Query: 516 PLHLAVESNNEAVINKLL 533
PLH A N+ + L+
Sbjct: 90 PLHCAASCNDTVICMALV 107
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRL 63
D + N+EGIT AI + I L GAN+N P G + LH AA+ N ++ +
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVICM 104
Query: 64 LL 65
L
Sbjct: 105 AL 106
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI--------LLRKG 161
N+EG T LH A NY +V LI GA+ + G+ LH A L++ G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 162 ADINVEN-NFGKTAFQ 176
A I + G TAF+
Sbjct: 111 AAIFATTLSDGATAFE 126
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV--SLLVKHGADV 371
N ++ L+ GANVN D TPLH A + C D V LV+HGA +
Sbjct: 66 NYSIVDFLITAGANVNSPDSHGWTPLHCA--ASCNDTVICMALVQHGAAI 113
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
N+ T LH A+ N S +++L+ GA V++ G PL+ A ++ I L++
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 467 ANV 469
A +
Sbjct: 111 AAI 113
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 402 NVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDART-------------QLGKDP 446
N + Y + + LHIA+E++++ + L+E+GA V AR G+ P
Sbjct: 85 NAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELP 144
Query: 447 LYIAVEMHNLSIVEQLLK---FKANVNSSDQFGRTVLHLAVKI-----QNVAILECLLVN 498
L +A +V LL+ A++ ++D G TVLH V I +N+A++
Sbjct: 145 LSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDG 204
Query: 499 KADINAKIISGI-------WKGYTPLHLAVESNNEAVINKLL 533
A++ + + TPL LA + + +L
Sbjct: 205 LLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHIL 246
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 19 AIVSSQTPIAKLLAERGANINDP-----FPDDGKSCLHI--------AATKNIRLVRLLL 65
AI KLL E GAN++ F +C + A TK +V LL
Sbjct: 102 AIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLL 161
Query: 66 E---YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV--------------NI 108
E + A D+ GNTVLH + I + ++ + + +I
Sbjct: 162 ENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDI 221
Query: 109 KNKEGDTPLHIAARTGNYKMVR 130
+N + TPL +AA+ G ++ R
Sbjct: 222 RNLQDLTPLKLAAKEGKIEIFR 243
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 412 TPLHIAVEQKNMSALNYLLEHGAQVDART-------------QLGKDPLYIAVEMHNLSI 458
+ LHIA+E++++ + L+E+GA V R G+ PL +A +
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 459 VEQLLK---FKANVNSSDQFGRTVLHLAVKI-----QNVAILECLLVNKADINAKIISGI 510
V LL+ A++ ++D G TVLH V I +N A++ + + A++ +
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211
Query: 511 W-------KGYTPLHLAVESNNEAVINKLL 533
+G TPL LA + + +L
Sbjct: 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 19 AIVSSQTPIAKLLAERGANI-----NDPFPDDGKSCLHI--------AATKNIRLVRLLL 65
AI KLL E GA++ F +C + A TK +V LL
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
Query: 66 E---YNVDVNAVDNLGNTVLHTVASIKTRDP--TAVEI------------LKTNRANVNI 108
E + A D+LGNTVLH + I P +A+ I L I
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 216
Query: 109 KNKEGDTPLHIAARTGNYKMVR 130
N +G TPL +AA+ G ++ R
Sbjct: 217 SNHQGLTPLKLAAKEGKIEIFR 238
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 468 NVNSSDQF--GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK---------GYTP 516
N +D+F G + LH+A++ +++ ++ L+ N AD++ + ++ G P
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 517 LHLAVESNNEAVINKLLDYNP----DLDVKDKNGNTALH 551
L LA + V+ LL+ NP L+ D GNT LH
Sbjct: 140 LSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLH 177
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 45/186 (24%)
Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
C D HS LH+AIEK+ + V+ N A +HL + +
Sbjct: 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVE--------------NGADVHLRACGRFFQKH 128
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK---HGADVNVIDNQGQMPLH 383
T Y G + PL +A ++ WD V+ L++ A + D+ G LH
Sbjct: 129 Q-GTCFYFG----------ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177
Query: 384 IAV-------QNGYVAI---PNLIRHGANV-------NARNKYAKTPLHIAVEQKNMSAL 426
V +N + I L++ GA + N TPL +A ++ +
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237
Query: 427 NYLLEH 432
++L+
Sbjct: 238 RHILQR 243
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDART-------------QLGKDPLYIAVEMHNLSIVE 460
LHIA+E++++ + L+E+GA V R G+ PL +A +V
Sbjct: 107 LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 166
Query: 461 QLLK---FKANVNSSDQFGRTVLHLAVKI-----QNVAILECLLVNKADINAKIISGIW- 511
LL+ A++ ++D G TVLH V I +N A++ + + A++ +
Sbjct: 167 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 226
Query: 512 ------KGYTPLHLAVESNNEAVINKLL 533
+G TPL LA + + +L
Sbjct: 227 EEISNHQGLTPLKLAAKEGKIEIFRHIL 254
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 468 NVNSSDQF--GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK---------GYTP 516
N +D+F G + LH+A++ +++ ++ L+ N AD++ + ++ G P
Sbjct: 93 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 152
Query: 517 LHLAVESNNEAVINKLLDYNP----DLDVKDKNGNTALH 551
L LA + V+ LL+ NP L+ D GNT LH
Sbjct: 153 LSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLH 190
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 19 AIVSSQTPIAKLLAERGANI-----NDPFPDDGKSCLHI--------AATKNIRLVRLLL 65
AI KLL E GA++ F +C + A TK +V LL
Sbjct: 110 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 169
Query: 66 E---YNVDVNAVDNLGNTVLHTVASIKTRDP--TAVEI------------LKTNRANVNI 108
E + A D+LGNTVLH + I P +A+ I L I
Sbjct: 170 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 229
Query: 109 KNKEGDTPLHIAARTGNYKMVR 130
N +G TPL +AA+ G ++ R
Sbjct: 230 SNHQGLTPLKLAAKEGKIEIFR 251
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 45/186 (24%)
Query: 267 CVDSLQFIHSPLHLAIEKQHIAIVQXXXXXXXXXXXXXTKGPTNKAPLHLVVQRKSWNTT 326
C D HS LH+AIEK+ + V+ N A +HL + +
Sbjct: 96 CTDEFYQGHSALHIAIEKRSLQCVKLLVE--------------NGADVHLRACGRFFQKH 141
Query: 327 MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK---HGADVNVIDNQGQMPLH 383
T Y G + PL +A ++ WD V+ L++ A + D+ G LH
Sbjct: 142 Q-GTCFYFG----------ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 190
Query: 384 IAV-------QNGYVAI---PNLIRHGANV-------NARNKYAKTPLHIAVEQKNMSAL 426
V +N + I L++ GA + N TPL +A ++ +
Sbjct: 191 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 250
Query: 427 NYLLEH 432
++L+
Sbjct: 251 RHILQR 256
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI 156
+N ++ GDT L+IAAR GN +V L+D+GA N G + G+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
++A+D T L+IA G++ IV+ LLD+GA
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKT-PLHIA 417
+ V L++ GAD N ++ G+ P+ + + L+ HGA N + T P+H A
Sbjct: 26 ETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDA 85
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+ + L L GA++D G+ P+ +A E + I L
Sbjct: 86 AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LL GAD N N FG+ Q+ M + EL L +G C + + +
Sbjct: 31 LLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAE-PNCADPATLT---RPVHDA 85
Query: 217 VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
R G + + ++ GA + D + +D+A E GH I +L H A D
Sbjct: 86 AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL--HAATGD 136
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKT-PLHIA 417
+ V L++ GA N ++ G+ P+ + + L+ HGA N + T P+H A
Sbjct: 26 EEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA 85
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+ + L L GA++D R G+ P+ +A E+ + + L
Sbjct: 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLL 213
V LL GA N N++G+ Q+ M + EL L +G C + + +
Sbjct: 28 VRALLEAGALPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLT---RPV 82
Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
R G + + ++ GA + +D + +D+A E GH + +L
Sbjct: 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 34/143 (23%)
Query: 305 TKGPTNKAPLHLVVQRKSWNT-----TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
+ G + P+ L + K+ N + F+ + Y G +T LHIAIE +C
Sbjct: 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG----------QTALHIAIERRCKH 107
Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVE 419
V LLV+ GADV+ +G+ + GY + + PL +A
Sbjct: 108 YVELLVEKGADVHA-QARGRF-FQPKDEGGYFY----------------FGELPLSLAAC 149
Query: 420 QKNMSALNYLLEHG-AQVDARTQ 441
++YL E+G Q D R Q
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQ 172
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 456 LSIVEQLLKFKANVNS--SDQF--GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511
L I E+ + +NS D + G+T LH+A++ + +E L+ AD++A+ +
Sbjct: 69 LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF 128
Query: 512 K----------GYTPLHLAVESNNEAVINKLLD---YNPDLDVKDKNGNTALH 551
+ G PL LA +N +++ L + DL +D GNT LH
Sbjct: 129 QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH 181
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 397 IRHGANVNARNKY--AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ------------- 441
+R N R+ Y +T LHIA+E++ + L+E GA V A+ +
Sbjct: 78 MREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137
Query: 442 -LGKDPLYIAVEMHNLSIVEQLLK---FKANVNSSDQFGRTVLHLAVKIQN 488
G+ PL +A + IV L + +A++ D G TVLH V I +
Sbjct: 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 204 ENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLL 262
+V + GQ LH+ + ++ V+L++EKGA+VHA Q E G+ E L
Sbjct: 87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA--QARGRFFQPKDEGGYFYFGELPL 144
Query: 263 DHGACVDSLQFIH 275
AC + +H
Sbjct: 145 SLAACTNQPHIVH 157
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 456 LSIVEQLLKFKANVNSSDQ----FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511
L I E+ + +NS + G+T LH+A++ + +E L+ AD++A+ +
Sbjct: 67 LDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFF 126
Query: 512 K----------GYTPLHLAVESNNEAVINKLLDYNP----DLDVKDKNGNTALH 551
+ G PL LA +N ++N L + NP D+ +D GNT LH
Sbjct: 127 QPKDEGGYFYFGELPLSLAACTNQPHIVNYLTE-NPHKKADMRRQDSRGNTVLH 179
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 305 TKGPTNKAPLHLVVQRKSWNT-----TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
+ G + P+ L + ++ N + F+ + Y G +T LHIAIE +C
Sbjct: 56 SNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRG----------QTALHIAIERRCKH 105
Query: 360 AVSLLVKHGADV 371
V LLV GADV
Sbjct: 106 YVELLVAQGADV 117
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 397 IRHGANVNARNKY--AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ------------- 441
+R N R+ Y +T LHIA+E++ + L+ GA V A+ +
Sbjct: 76 MREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYF 135
Query: 442 -LGKDPLYIAVEMHNLSIVEQLLK---FKANVNSSDQFGRTVLHLAVKIQN 488
G+ PL +A + IV L + KA++ D G TVLH V I +
Sbjct: 136 YFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIAD 186
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 70 DVNAVDNLGNTVLHTVASIK--TRDPTA-------VEILKTNR--ANVNIK---NKEGDT 115
D+ D+ GNTVLH + +I TR+ T + +LK R + N++ N +G +
Sbjct: 166 DMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLS 225
Query: 116 PLHIAARTG 124
PL +AA+TG
Sbjct: 226 PLMMAAKTG 234
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 414 LHIAVEQKNMSAL---NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
LH+AV+ N ++L ++++++G +DA+ G L+ A + ++ LLK +A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 471 SSDQFGRTVLHLAVK 485
+ ++ G T L +A K
Sbjct: 235 TVNEAGETALDIARK 249
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 117 LHIAARTGN---YKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
LH+A + N +V +I +G H + K G ALH A + +LL+ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 166 VENNFGKTAFQMA 178
N G+TA +A
Sbjct: 235 TVNEAGETALDIA 247
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 414 LHIAVEQKNMSAL---NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
LH+AV+ N ++L ++++++G +DA+ G L+ A + ++ LLK +A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 471 SSDQFGRTVLHLAVK 485
+ ++ G T L +A K
Sbjct: 254 TVNEAGETALDIARK 268
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 117 LHIAARTGN---YKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
LH+A + N +V +I +G H + K G ALH A + +LL+ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 166 VENNFGKTAFQMA 178
N G+TA +A
Sbjct: 254 TVNEAGETALDIA 266
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
N + TLL GA N+ EN+ PLH A + V +L+ G D + D++G L+
Sbjct: 43 NVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100
Query: 384 IAVQNGYVAIPNL-IRHGANVNARNKYA-KTPLHIAVEQKNMSALNYLLEH 432
AV +G L ++ + K KT + AV ++S ++Y L
Sbjct: 101 YAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 80 TVLHTVASIKTRDPTA---VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
T LH ++++ D T+ V+ L N N++ + +G T LH T N + +++L+
Sbjct: 171 TALHL--AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 137 AHTECKNHQGYNALHVA 153
A E N G L +A
Sbjct: 229 ASIEIANESGETPLDIA 245
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 82 LHTVA-SIKTRDPTAVEILKTNRANVNIKNK--------EGDTPLHIAART---GNYKMV 129
LH++ ++KTRD +L+ V++ K +T LH+A R+ + +V
Sbjct: 131 LHSLCEAVKTRD--IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188
Query: 130 RVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEM 181
L+ + + + + +G ALH + +LLR A I + N G+T +A +
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Query: 182 KNFPAIELF 190
K+ EL
Sbjct: 249 KHEHCEELL 257
>pdb|2FS5|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FS5|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FT0|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
pdb|2FT0|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
Length = 235
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 148 NALHVAVGILLRKGAD-------INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQC 200
NA +G+L +GA +N GKT ++A +M N A++ +++ G NVE
Sbjct: 170 NATDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,775,303
Number of Sequences: 62578
Number of extensions: 640593
Number of successful extensions: 4148
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 1262
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)