Query psy11230
Match_columns 553
No_of_seqs 290 out of 3288
Neff 11.9
Searched_HMMs 29240
Date Fri Aug 16 21:31:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 7.7E-68 2.6E-72 511.7 49.6 396 1-536 3-400 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 4.2E-66 1.4E-70 499.5 42.8 380 34-553 3-384 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 3.1E-47 1.1E-51 354.0 34.0 132 9-142 22-154 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 8E-47 2.7E-51 351.2 35.3 303 77-541 24-329 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 3E-46 1E-50 350.9 28.0 331 4-525 16-351 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-42 6.6E-47 314.9 32.9 262 241-544 4-284 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 7.3E-43 2.5E-47 327.8 28.7 305 208-537 23-333 (351)
8 2fo1_E LIN-12 protein; beta-ba 100.0 9.7E-44 3.3E-48 333.7 20.8 318 173-539 39-372 (373)
9 2fo1_E LIN-12 protein; beta-ba 100.0 4.2E-43 1.4E-47 329.4 22.5 219 225-502 149-372 (373)
10 1wdy_A 2-5A-dependent ribonucl 100.0 3.1E-41 1.1E-45 306.8 33.9 260 209-506 5-283 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 8.8E-41 3E-45 301.4 27.3 208 340-553 54-262 (285)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 5.9E-41 2E-45 297.7 22.5 232 3-266 1-247 (253)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-40 5.6E-45 299.6 24.8 229 303-541 52-282 (285)
14 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-40 1.4E-44 293.5 24.6 235 309-553 2-245 (261)
15 3b7b_A Euchromatic histone-lys 100.0 1.4E-39 4.7E-44 286.7 25.2 212 338-553 4-217 (237)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 7.3E-40 2.5E-44 290.7 23.2 232 303-538 3-248 (253)
17 2xai_A ASB-9, ankyrin repeat a 100.0 3E-39 1E-43 288.0 25.1 204 344-553 2-206 (261)
18 1oy3_D Transcription factor in 100.0 1.3E-39 4.6E-44 295.3 23.2 244 304-553 3-265 (282)
19 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-38 4.1E-43 281.7 27.2 209 341-553 5-223 (241)
20 3ljn_A Hypothetical protein; a 100.0 8.5E-40 2.9E-44 307.4 20.2 265 2-296 10-311 (364)
21 3b7b_A Euchromatic histone-lys 100.0 1.1E-38 3.9E-43 280.9 26.2 228 3-263 2-231 (237)
22 4b93_B Ankyrin repeat domain-c 100.0 1E-39 3.5E-44 290.2 18.7 205 345-553 11-225 (269)
23 3ljn_A Hypothetical protein; a 100.0 1E-39 3.5E-44 306.8 18.8 243 303-553 13-296 (364)
24 1k1a_A B-cell lymphoma 3-encod 100.0 8.5E-39 2.9E-43 282.7 22.1 228 305-538 4-241 (241)
25 3aji_A 26S proteasome non-ATPa 100.0 4.3E-38 1.5E-42 276.0 23.3 198 338-539 33-231 (231)
26 2dzn_A Probable 26S proteasome 100.0 1E-37 3.6E-42 273.1 23.5 205 345-553 2-215 (228)
27 1oy3_D Transcription factor in 100.0 1.2E-37 4.2E-42 282.5 23.3 248 5-284 2-268 (282)
28 3aji_A 26S proteasome non-ATPa 100.0 1.8E-37 6.3E-42 272.0 23.2 208 342-553 3-212 (231)
29 2f8y_A Notch homolog 1, transl 100.0 3.2E-37 1.1E-41 268.9 22.9 211 326-540 5-218 (223)
30 4b93_B Ankyrin repeat domain-c 100.0 3E-38 1E-42 280.8 15.9 232 274-539 11-245 (269)
31 3eu9_A Huntingtin-interacting 100.0 1.5E-36 5.3E-41 268.2 26.0 232 305-542 4-239 (240)
32 3eu9_A Huntingtin-interacting 100.0 1.7E-36 5.9E-41 267.9 26.0 233 4-268 1-236 (240)
33 2f8y_A Notch homolog 1, transl 100.0 7.2E-36 2.5E-40 260.3 26.8 202 2-269 14-218 (223)
34 1s70_B 130 kDa myosin-binding 100.0 1.1E-36 3.6E-41 278.5 20.9 231 309-553 39-272 (299)
35 3kea_A K1L; tropism, ANK repea 100.0 9.8E-37 3.3E-41 274.7 19.3 219 37-297 23-244 (285)
36 3kea_A K1L; tropism, ANK repea 100.0 7.6E-37 2.6E-41 275.5 18.3 239 219-505 9-250 (285)
37 2dzn_A Probable 26S proteasome 100.0 5.5E-36 1.9E-40 262.1 22.6 216 311-535 3-227 (228)
38 1ikn_D Protein (I-kappa-B-alph 100.0 4.4E-37 1.5E-41 270.1 14.4 210 340-553 3-226 (236)
39 1s70_B 130 kDa myosin-binding 100.0 4.2E-36 1.4E-40 274.5 16.7 247 8-263 36-285 (299)
40 2rfa_A Transient receptor pote 100.0 6.9E-35 2.4E-39 255.6 21.7 198 344-545 2-229 (232)
41 1sw6_A Regulatory protein SWI6 100.0 1E-36 3.5E-41 280.2 8.9 264 252-553 29-323 (327)
42 1sw6_A Regulatory protein SWI6 100.0 1.5E-36 5.1E-41 279.2 9.8 269 219-524 29-327 (327)
43 2rfa_A Transient receptor pote 100.0 2E-34 6.8E-39 252.7 20.6 197 11-269 2-224 (232)
44 4gpm_A Engineered protein OR26 100.0 4.4E-34 1.5E-38 233.5 20.1 155 382-540 8-163 (169)
45 3hra_A Ankyrin repeat family p 100.0 2E-33 7E-38 240.4 24.5 190 343-536 3-201 (201)
46 4gpm_A Engineered protein OR26 100.0 1.1E-33 3.7E-38 231.2 20.3 159 347-505 6-165 (169)
47 3hra_A Ankyrin repeat family p 100.0 3.5E-33 1.2E-37 239.0 23.7 196 9-265 2-201 (201)
48 2pnn_A Transient receptor pote 100.0 1.6E-34 5.6E-39 259.7 15.2 210 338-551 6-272 (273)
49 2etb_A Transient receptor pote 100.0 7.6E-34 2.6E-38 252.9 16.1 191 345-539 2-247 (256)
50 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-34 7.8E-39 252.8 11.4 215 306-524 4-230 (236)
51 2pnn_A Transient receptor pote 100.0 8.1E-34 2.8E-38 255.2 14.1 209 1-267 2-258 (273)
52 2etb_A Transient receptor pote 100.0 1.5E-33 5.2E-38 250.9 15.7 199 11-268 1-247 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 3.8E-32 1.3E-36 242.6 17.0 194 343-540 3-252 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 1.7E-32 5.7E-37 244.9 12.1 203 9-269 2-252 (260)
55 2rfm_A Putative ankyrin repeat 100.0 3.8E-31 1.3E-35 224.0 17.8 162 5-194 28-190 (192)
56 3v30_A DNA-binding protein rfx 100.0 4.3E-31 1.5E-35 219.4 16.0 143 403-549 29-171 (172)
57 2rfm_A Putative ankyrin repeat 100.0 2.5E-30 8.5E-35 219.0 18.0 159 374-536 31-190 (192)
58 4hbd_A KN motif and ankyrin re 100.0 7.6E-31 2.6E-35 234.9 14.5 187 346-536 77-273 (276)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.2E-30 1.1E-34 212.0 16.6 159 10-196 3-162 (162)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.1E-30 2.4E-34 211.0 18.8 159 8-194 10-169 (169)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-29 3.8E-34 209.9 18.7 152 381-536 17-169 (169)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.3E-30 1.8E-34 210.7 16.4 154 380-538 7-162 (162)
63 3v31_A Ankyrin repeat family A 100.0 8.9E-30 3E-34 210.4 17.8 158 378-539 3-161 (167)
64 3v31_A Ankyrin repeat family A 100.0 1.4E-29 4.7E-34 209.2 18.2 159 11-197 2-161 (167)
65 3v30_A DNA-binding protein rfx 100.0 1.6E-29 5.5E-34 210.0 17.7 168 345-516 2-171 (172)
66 3f6q_A Integrin-linked protein 100.0 1.9E-29 6.6E-34 210.7 17.2 164 379-546 6-171 (179)
67 4hbd_A KN motif and ankyrin re 100.0 1.2E-29 3.9E-34 227.2 15.2 185 313-499 79-273 (276)
68 2vge_A RELA-associated inhibit 100.0 1.1E-32 3.6E-37 238.9 -4.5 186 2-190 8-207 (229)
69 1awc_B Protein (GA binding pro 100.0 6.8E-29 2.3E-33 201.5 18.0 150 12-190 2-152 (153)
70 2aja_A Ankyrin repeat family p 100.0 9.4E-33 3.2E-37 255.0 -6.9 50 344-396 318-367 (376)
71 1d9s_A Cyclin-dependent kinase 100.0 2E-29 6.8E-34 199.9 12.3 133 2-138 2-136 (136)
72 2vge_A RELA-associated inhibit 100.0 6.8E-31 2.3E-35 227.5 4.0 186 329-553 2-195 (229)
73 1awc_B Protein (GA binding pro 100.0 1.8E-28 6.3E-33 198.9 17.5 122 407-532 31-152 (153)
74 3twr_A Tankyrase-2; ankyrin re 100.0 4.6E-29 1.6E-33 205.6 13.6 160 7-195 3-164 (165)
75 3twr_A Tankyrase-2; ankyrin re 100.0 6.1E-29 2.1E-33 204.9 14.0 160 342-537 5-164 (165)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.5E-29 5E-34 221.8 10.8 171 378-553 5-188 (239)
77 3f6q_A Integrin-linked protein 100.0 3.5E-28 1.2E-32 203.1 17.0 164 344-507 4-169 (179)
78 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.5E-28 2.2E-32 196.7 17.0 152 12-193 2-155 (156)
79 1bd8_A P19INK4D CDK4/6 inhibit 100.0 8.6E-28 2.9E-32 196.0 17.1 150 380-535 4-155 (156)
80 1bi7_B P16INK4A, MTS1, multipl 100.0 1.5E-28 5.1E-33 200.0 12.0 144 404-552 6-150 (156)
81 1d9s_A Cyclin-dependent kinase 100.0 3.2E-28 1.1E-32 192.9 13.4 134 400-538 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 100.0 1.1E-28 3.9E-33 200.7 10.2 145 4-152 4-150 (156)
83 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.4E-30 8.3E-35 226.8 -0.0 207 343-552 3-224 (239)
84 2aja_A Ankyrin repeat family p 99.9 3.3E-31 1.1E-35 244.7 -9.4 262 212-534 68-370 (376)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 1.9E-26 6.4E-31 182.7 13.9 127 7-136 9-136 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.1E-26 1.7E-30 178.3 16.1 126 409-538 1-126 (126)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.2E-26 1.8E-30 178.3 15.4 125 11-138 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 5.9E-26 2E-30 179.8 15.0 126 407-536 11-136 (136)
89 3t8k_A Uncharacterized protein 99.9 4.4E-27 1.5E-31 195.5 7.5 158 380-543 8-184 (186)
90 3c5r_A BARD-1, BRCA1-associate 99.9 9.7E-27 3.3E-31 184.8 8.3 133 2-138 1-134 (137)
91 3t8k_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 190.1 9.7 154 12-194 6-177 (186)
92 3c5r_A BARD-1, BRCA1-associate 99.9 8.9E-26 3E-30 179.2 9.6 134 400-538 1-134 (137)
93 3ui2_A Signal recognition part 99.9 3.1E-26 1.1E-30 200.9 1.7 170 11-196 14-185 (244)
94 3ehr_A Osteoclast-stimulating 99.9 4.8E-25 1.6E-29 191.1 7.8 139 5-146 66-206 (222)
95 3aaa_C Myotrophin, protein V-1 99.9 2.5E-24 8.6E-29 167.1 9.7 116 8-126 3-119 (123)
96 2b0o_E UPLC1; arfgap, structur 99.9 7.4E-24 2.5E-28 190.9 13.9 134 410-553 151-293 (301)
97 3deo_A Signal recognition part 99.9 1.5E-23 5E-28 175.4 13.8 138 44-193 42-181 (183)
98 3ehr_A Osteoclast-stimulating 99.9 2.4E-24 8.3E-29 186.7 9.2 137 407-547 70-207 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 1.2E-23 4.2E-28 163.3 10.9 116 408-527 5-120 (123)
100 3deo_A Signal recognition part 99.9 1.1E-24 3.7E-29 182.3 4.4 140 375-535 41-181 (183)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-23 4.6E-28 189.2 11.3 126 11-138 150-284 (301)
102 1dcq_A PYK2-associated protein 99.9 5E-22 1.7E-26 176.9 19.9 190 341-538 62-263 (278)
103 3ui2_A Signal recognition part 99.9 6.5E-23 2.2E-27 179.7 11.6 141 377-538 44-185 (244)
104 3jue_A Arfgap with coiled-coil 99.9 1.6E-22 5.6E-27 185.8 12.9 143 8-153 195-344 (368)
105 3jue_A Arfgap with coiled-coil 99.9 3.3E-22 1.1E-26 183.8 14.7 139 410-552 199-343 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.9 3.2E-22 1.1E-26 194.4 15.2 129 411-543 133-270 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7.7E-22 2.6E-26 144.3 12.5 92 443-538 2-93 (93)
108 1dcq_A PYK2-associated protein 99.9 4E-22 1.4E-26 177.5 13.1 130 8-139 126-264 (278)
109 3lvq_E ARF-GAP with SH3 domain 99.9 7.8E-22 2.7E-26 191.7 14.9 128 12-141 132-268 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.4E-21 4.7E-26 142.9 12.5 93 409-501 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.9 4.7E-22 1.6E-26 152.2 8.5 109 438-550 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.6E-21 5.5E-26 149.3 7.7 105 43-149 6-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 3E-18 1E-22 129.3 9.9 88 43-132 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 5.5E-18 1.9E-22 127.8 10.8 89 407-495 21-109 (110)
115 4g26_A Pentatricopeptide repea 44.0 52 0.0018 31.4 7.2 147 381-540 32-209 (501)
116 4g26_A Pentatricopeptide repea 38.9 63 0.0021 30.8 6.9 106 395-506 95-212 (501)
117 3mkq_B Coatomer subunit alpha; 37.3 1.5E+02 0.005 23.4 7.5 131 115-297 10-141 (177)
118 1gp8_A Protein (scaffolding pr 35.7 32 0.0011 18.7 2.3 17 517-533 17-33 (40)
119 2dkl_A Trinucleotide repeat co 35.2 17 0.00058 24.5 1.6 44 25-74 22-66 (85)
120 3mkq_B Coatomer subunit alpha; 33.3 1.6E+02 0.0055 23.2 7.1 132 379-537 9-143 (177)
121 1vek_A UBP14, ubiquitin-specif 24.1 38 0.0013 22.7 1.8 45 24-73 29-74 (84)
122 2crn_A Ubash3A protein; compac 24.1 55 0.0019 20.5 2.4 44 490-541 11-54 (64)
123 2dag_A Ubiquitin carboxyl-term 21.2 79 0.0027 20.5 2.8 45 488-540 9-53 (74)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-68 Score=511.66 Aligned_cols=396 Identities=32% Similarity=0.434 Sum_probs=303.6
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCC
Q psy11230 1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGN 79 (553)
Q Consensus 1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~ 79 (553)
.||++|.++..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 81 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 48999999999999999999999999999999999999887 8899999999999999 999999999999999999999
Q ss_pred cHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHh
Q psy11230 80 TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR 159 (553)
Q Consensus 80 t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~ 159 (553)
||||+|+.. |+.+++++|+++|++++..+..|.||||+|+..|+.++|++|++.+++.+..+..|
T Consensus 82 t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g------------- 146 (437)
T 1n11_A 82 TPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG------------- 146 (437)
T ss_dssp CHHHHHHHH--TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS-------------
T ss_pred CHHHHHHHC--CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC-------------
Confidence 999999999 99999999999999999999999999999999999999999999988776554444
Q ss_pred CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCC
Q psy11230 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239 (553)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~ 239 (553)
.|||++|+.. |+.+++++|+++|.+++..+
T Consensus 147 ------------~t~L~~A~~~--------------------------------------g~~~~v~~Ll~~g~~~~~~~ 176 (437)
T 1n11_A 147 ------------FTPLHVAAKY--------------------------------------GKVRVAELLLERDAHPNAAG 176 (437)
T ss_dssp ------------CCHHHHHHHT--------------------------------------TCHHHHHHHHHTTCCTTCCC
T ss_pred ------------CCHHHHHHHc--------------------------------------CCHHHHHHHHhCCCCCCCCC
Confidence 3344444444 55555666666666666677
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHh
Q psy11230 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQ 319 (553)
Q Consensus 240 ~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (553)
..|.|||++|+..|+.+++++|++++.++..
T Consensus 177 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------------------------------------- 207 (437)
T 1n11_A 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS------------------------------------------------- 207 (437)
T ss_dssp SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-------------------------------------------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------------------------------------------
Confidence 7788888888888888777777776554322
Q ss_pred ccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHH
Q psy11230 320 RKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIR 398 (553)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~ 398 (553)
.+..+.|||++|+..|+.+++++|++.|++++..+..|.|||+.|+..++.+++ .|+.
T Consensus 208 ---------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 208 ---------------------PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266 (437)
T ss_dssp ---------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred ---------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 223445556666666666666666666666555555566666666666666555 4445
Q ss_pred cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy11230 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478 (553)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t 478 (553)
++.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 267 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t 346 (437)
T 1n11_A 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 346 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence 56666666667777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
|||+|+.+|+.+++++|+++|++++..+. .|.|||++|.+.|+.+++++|....
T Consensus 347 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~----~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSS----DGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCS----SSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHCChHHHHHHHHHCcCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 88888888888888888888888887766 7888888888888888888776554
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-66 Score=499.50 Aligned_cols=380 Identities=29% Similarity=0.436 Sum_probs=302.1
Q ss_pred cCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC
Q psy11230 34 RGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE 112 (553)
Q Consensus 34 ~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~ 112 (553)
.|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|.||||+|+.. |+.+++++|++.|++++.++..
T Consensus 3 ~g~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~ 79 (437)
T 1n11_A 3 PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTEVAKYLLQNKAKVNAKAKD 79 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH--TCHHHHHHHHHHTCCSSCCCTT
T ss_pred CCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCC
Confidence 35555554 6666666666666666 666666666666666666666666666666 6666666666666666666666
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy11230 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLK 192 (553)
Q Consensus 113 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~ 192 (553)
|+||||+|+..|+.++|++|+++|++++..+..|.|| |+
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-------------------------L~---------------- 118 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP-------------------------LH---------------- 118 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH-------------------------HH----------------
T ss_pred CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH-------------------------HH----------------
Confidence 6666666666666666666666666655444333322 22
Q ss_pred cCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q psy11230 193 YGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ 272 (553)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~ 272 (553)
.|+..|+.+++++|++.+.+.+..+..|.|||++|+..|+.+++++|+++|.
T Consensus 119 ----------------------~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------ 170 (437)
T 1n11_A 119 ----------------------IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA------ 170 (437)
T ss_dssp ----------------------HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred ----------------------HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------
Confidence 2333444455555555555555566667777777777777766666666544
Q ss_pred ccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy11230 273 FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352 (553)
Q Consensus 273 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a 352 (553)
+++..+..|.|||++|
T Consensus 171 ----------------------------------------------------------------~~~~~~~~g~t~L~~A 186 (437)
T 1n11_A 171 ----------------------------------------------------------------HPNAAGKNGLTPLHVA 186 (437)
T ss_dssp ----------------------------------------------------------------CTTCCCSSCCCHHHHH
T ss_pred ----------------------------------------------------------------CCCCCCCCCCCHHHHH
Confidence 3444567789999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy11230 353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431 (553)
Q Consensus 353 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 431 (553)
+..++.+++++|+++|.+++..+..|.|||++|+..++.+++ .|++.|.+++..+..|.||||+|+..|+.+++++|++
T Consensus 187 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266 (437)
T ss_dssp HHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999988 7789999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccC
Q psy11230 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511 (553)
Q Consensus 432 ~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 511 (553)
+|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 267 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~---- 342 (437)
T 1n11_A 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK---- 342 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT----
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 512 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
.|.||||+|+.+|+.++|++|+++|++++.+|.+|+|||++|
T Consensus 343 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred CCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 899999999999999999999999999999999999999875
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.1e-47 Score=354.03 Aligned_cols=132 Identities=25% Similarity=0.248 Sum_probs=121.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q psy11230 9 NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVAS 87 (553)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~ 87 (553)
+..|.|+|+.||+.|++++|++|++.|++++...+..|.||||+|+..|+ ++|++|+++|++++..+..+.++++.++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 34578999999999999999999999999998855679999999999999 99999999999999999999999999999
Q ss_pred hcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy11230 88 IKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK 142 (553)
Q Consensus 88 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 142 (553)
. +...++..+++.+++++.++..|+|||++|+..|+.+++++|+++|++++..
T Consensus 102 ~--~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~ 154 (337)
T 4g8k_A 102 A--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154 (337)
T ss_dssp H--TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred c--ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh
Confidence 8 9999999999999999999999999999999999999999999998887644
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8e-47 Score=351.24 Aligned_cols=303 Identities=30% Similarity=0.362 Sum_probs=197.7
Q ss_pred CCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy11230 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155 (553)
Q Consensus 77 ~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~ 155 (553)
.|.|+||.|+.. |+.++|++|++.|+++|.++.. |+||||+|+..|+.++|++|+++|++++.++..+.++++
T Consensus 24 ~~~t~L~~Av~~--g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~---- 97 (337)
T 4g8k_A 24 EDNHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI---- 97 (337)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH----
T ss_pred CCChHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhH----
Confidence 467888888887 8888888888888888877654 788888888888888888888888877766555544332
Q ss_pred HHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCC
Q psy11230 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV 235 (553)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~ 235 (553)
.++..+....+..+++.+.++
T Consensus 98 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T 4g8k_A 98 -----------------------------------------------------------LAAIAGSVKLLKLFLSKGADV 118 (337)
T ss_dssp -----------------------------------------------------------HHHHHTCHHHHHHHHTTTCCT
T ss_pred -----------------------------------------------------------HHHhcccchhhHHhhhccchh
Confidence 223344555666666777778
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHH
Q psy11230 236 HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLH 315 (553)
Q Consensus 236 ~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 315 (553)
+..+..|.||+++|+..|+.+++++|+++|+++......
T Consensus 119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~----------------------------------------- 157 (337)
T 4g8k_A 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT----------------------------------------- 157 (337)
T ss_dssp TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-----------------------------------------
T ss_pred hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc-----------------------------------------
Confidence 888899999999999999999999999998876543210
Q ss_pred HHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCchHH
Q psy11230 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK-HGADVNVIDNQGQMPLHIAVQNGYVAIP 394 (553)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 394 (553)
..+....+..|.||||+|+..|+.+++++|++ .|++++..+..|.++++.++..+...
T Consensus 158 -------------------~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~-- 216 (337)
T 4g8k_A 158 -------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS-- 216 (337)
T ss_dssp -------------------C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT--
T ss_pred -------------------ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc--
Confidence 01122345678899999999999999999995 58888888888888887765443211
Q ss_pred HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCC
Q psy11230 395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSD 473 (553)
Q Consensus 395 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~ 473 (553)
+...++++|+++|++++.++..|+||||+|+..|+.+++++|++. |++++.++
T Consensus 217 --------------------------~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d 270 (337)
T 4g8k_A 217 --------------------------DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 270 (337)
T ss_dssp --------------------------THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred --------------------------cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence 012344455555555555555555555555555555555555543 44555555
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541 (553)
Q Consensus 474 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~ 541 (553)
..|+||||+|++.|+.+++++|+++|++++..+ ||++|+.+|+.++|++|+++||+++.
T Consensus 271 ~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~---------~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 271 SDGKTALLLAVELKLKKIAELLCKRGASTDCGD---------LVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC---------HHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------HHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 555555555555555555555555555554431 45555555555555555555555443
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3e-46 Score=350.88 Aligned_cols=331 Identities=26% Similarity=0.254 Sum_probs=228.5
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTV 81 (553)
Q Consensus 4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~ 81 (553)
+.+.++..|.|+|+.|+..|+.+.|+.|+.. +.+++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+||
T Consensus 16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 94 (351)
T 3utm_A 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence 4456677788888888888888888888764 7777776 7788888888888888 88888888888888888888888
Q ss_pred HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCC
Q psy11230 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKG 161 (553)
Q Consensus 82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~ 161 (553)
||+|+.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||++++
T Consensus 95 L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a-------- 164 (351)
T 3utm_A 95 LHNACSY--GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA-------- 164 (351)
T ss_dssp HHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC--------
T ss_pred HHHHHHC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHH--------
Confidence 8888887 888888888888888888888888888888888888888888888887776666555554433
Q ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Q psy11230 162 ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQL 241 (553)
Q Consensus 162 ~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~ 241 (553)
+..+..+ .+++...
T Consensus 165 -----------------~~~~~~~--------------------------------------~~~~~~~----------- 178 (351)
T 3utm_A 165 -----------------PTPELRE--------------------------------------RLTYEFK----------- 178 (351)
T ss_dssp -----------------SSHHHHH--------------------------------------HHHHHHH-----------
T ss_pred -----------------hhhhhHH--------------------------------------HHHhhhc-----------
Confidence 1111111 1111111
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhcc
Q psy11230 242 CKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK 321 (553)
Q Consensus 242 ~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (553)
..++..++..+..+.++.++....
T Consensus 179 -~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------------------------- 202 (351)
T 3utm_A 179 -GHSLLQAAREADLAKVKKTLALEI------------------------------------------------------- 202 (351)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTTCC-------------------------------------------------------
T ss_pred -ccHHHHHHHhccHHHHHHHHHhhc-------------------------------------------------------
Confidence 123444444444444444433211
Q ss_pred ccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHH
Q psy11230 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIES---QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398 (553)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~ 398 (553)
.....+..+.||||+|+.. ++.+++++|++.|+++
T Consensus 203 ---------------~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~--------------------------- 240 (351)
T 3utm_A 203 ---------------INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV--------------------------- 240 (351)
T ss_dssp ---------------TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT---------------------------
T ss_pred ---------------ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc---------------------------
Confidence 0111234566777777776 4456666666666554
Q ss_pred cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy11230 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478 (553)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t 478 (553)
+.++..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 241 -----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~t 315 (351)
T 3utm_A 241 -----NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315 (351)
T ss_dssp -----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred -----CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence 444556678888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCC
Q psy11230 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNN 525 (553)
Q Consensus 479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~ 525 (553)
|+++| ..+++++|.+.+..... .+.+++..|+++|+
T Consensus 316 al~~a----~~~~~~~l~~~~~~~~~-------~~~~~l~~A~~~gd 351 (351)
T 3utm_A 316 AAQMG----NEAVQQILSESTPMRTS-------DVDYRLLEASKAGD 351 (351)
T ss_dssp HHHHS----CHHHHHHHHHC---------------------------
T ss_pred hhhhh----hHHHHHHHHhccccccC-------cceeehhhhhccCC
Confidence 99887 66888888888765433 45578888888774
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-42 Score=314.85 Aligned_cols=262 Identities=31% Similarity=0.361 Sum_probs=214.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc--ccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHH
Q psy11230 241 LCKTALDIAVEHGHLKIVEFLLDHGACVDSLQ--FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318 (553)
Q Consensus 241 ~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (553)
.|.++|+.|+..|+.+++++|++.|.++.... .+.+||++|+..|+.++
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----------------------------- 54 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----------------------------- 54 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH-----------------------------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH-----------------------------
Confidence 35678888888888888888888877665441 14455555555555544
Q ss_pred hccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHH
Q psy11230 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLI 397 (553)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll 397 (553)
+++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++ .++
T Consensus 55 ---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 55 ---------VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125 (285)
T ss_dssp ---------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred ---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH
Confidence 4555555555666666667777777777777777777777777776666777777777777776666 455
Q ss_pred HcCCCCCCC----------CCCCChHHHHHHhcCCHHHHHHHHhC-CCCccccccCCCCHHHHHHHhCC----HHHHHHH
Q psy11230 398 RHGANVNAR----------NKYAKTPLHIAVEQKNMSALNYLLEH-GAQVDARTQLGKDPLYIAVEMHN----LSIVEQL 462 (553)
Q Consensus 398 ~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~----~~~v~~L 462 (553)
+.|.+++.. +..|.|||+.|+..|+.+++++|++. |++++..+..|.||||+|+..++ .+++++|
T Consensus 126 ~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L 205 (285)
T 1wdy_A 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205 (285)
T ss_dssp HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH
Confidence 666666655 67799999999999999999999997 99999999999999999999999 9999999
Q ss_pred HhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230 463 LKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541 (553)
Q Consensus 463 ~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~ 541 (553)
+++|++++.++..|.||||+|+..++.+++++|++ .|++++..+. .|.||||+|++.|+.+++++|+++|++++.
T Consensus 206 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~----~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS----DGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC----CCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999 8999999887 899999999999999999999999999999
Q ss_pred CCC
Q psy11230 542 KDK 544 (553)
Q Consensus 542 ~~~ 544 (553)
+|.
T Consensus 282 ~d~ 284 (285)
T 1wdy_A 282 GDL 284 (285)
T ss_dssp SSC
T ss_pred ccc
Confidence 884
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.3e-43 Score=327.82 Aligned_cols=305 Identities=26% Similarity=0.321 Sum_probs=200.9
Q ss_pred CCchhhHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhC
Q psy11230 208 HGGQLLLHLVRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQ 285 (553)
Q Consensus 208 ~~~~~l~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~ 285 (553)
.+.++|+.|++.|+.+.++.|+.. +.+++..+..|.||||+|+..|+.+++++|+++|+++..... +.+||++|+..|
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence 345678888888888877777765 677777788888888888888888888888888777655433 556666666666
Q ss_pred CHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11230 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365 (553)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll 365 (553)
+.+++++|++. ..+++..+..+.||||+|+..++. +++++|+++|.+++..+..+.++++.++..+..+.+++..
T Consensus 103 ~~~iv~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 103 HYEVTELLLKH---GACVNAMDLWQFTPLHEAASKNRV--EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp CHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 66666666655 233334444555555555555543 5555555556666666666666666665555555555544
Q ss_pred hCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc---CCHHHHHHHHhCCCCcccccc
Q psy11230 366 KHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ---KNMSALNYLLEHGAQVDARTQ 441 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~ 441 (553)
. ..++..++..+..+.. .++..+......+..|.||||+|+.. +..+++++|+++|++++.++.
T Consensus 178 ~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~ 245 (351)
T 3utm_A 178 K------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK 245 (351)
T ss_dssp H------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT
T ss_pred c------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC
Confidence 3 1244445555555444 44444444444555677777777777 446777777777777777777
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHH
Q psy11230 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAV 521 (553)
Q Consensus 442 ~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~ 521 (553)
.|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+. .|.||+++|
T Consensus 246 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----~g~tal~~a- 320 (351)
T 3utm_A 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL----QGFTAAQMG- 320 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHS-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCChhhhh-
Confidence 777777777777777777777777777777777777777777777777777777777777777666 677777766
Q ss_pred hhCCHHHHHHHHhcCC
Q psy11230 522 ESNNEAVINKLLDYNP 537 (553)
Q Consensus 522 ~~~~~~~v~~Ll~~g~ 537 (553)
+.+++++|.+.+.
T Consensus 321 ---~~~~~~~l~~~~~ 333 (351)
T 3utm_A 321 ---NEAVQQILSESTP 333 (351)
T ss_dssp ---CHHHHHHHHHC--
T ss_pred ---hHHHHHHHHhccc
Confidence 5567777777655
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.7e-44 Score=333.75 Aligned_cols=318 Identities=19% Similarity=0.201 Sum_probs=230.9
Q ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHc
Q psy11230 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEH 252 (553)
Q Consensus 173 ~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~ 252 (553)
.+|..++..|+.+.++.+++....... ..+++..+...|+++++++++.. ..+..|.||||+|+..
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~ 104 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQHYSLYPN---------PQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAG 104 (373)
T ss_dssp ---------------------------------------------------------------------CCCHHHHHHHS
T ss_pred cccccccCCccccchhhhhhhhccccC---------ccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcC
Confidence 345556677777777777665443321 11234445577888888877654 3456778888888885
Q ss_pred CCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHH
Q psy11230 253 GHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL 332 (553)
Q Consensus 253 ~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 332 (553)
+. +++++|+....+......+.+||++|+..|+.+++++|+. ..++.|+
T Consensus 105 ~~-~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~------------------------------~~~~~ll 153 (373)
T 2fo1_E 105 SY-AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV------------------------------HEAKECI 153 (373)
T ss_dssp SS-CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH------------------------------HHHHHHH
T ss_pred Cc-hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHH------------------------------HHHHHHH
Confidence 54 6777776544433333346777887777777777777765 3456678
Q ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHH-HHHcC---CCCCCCCC
Q psy11230 333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHG---ANVNARNK 408 (553)
Q Consensus 333 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~-ll~~~---~~~~~~~~ 408 (553)
+.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++. |+..+ .+++..+.
T Consensus 154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999995 44555 68999999
Q ss_pred CCChHHHHHHhcC---CHHHHHHHHhCCCCccc--------cccCCCCHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCC
Q psy11230 409 YAKTPLHIAVEQK---NMSALNYLLEHGAQVDA--------RTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFG 476 (553)
Q Consensus 409 ~~~~~l~~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~~~t~l~~A~~~~~~~~v~~L~~~g-~~~~~~~~~~ 476 (553)
.|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ ++++.++..|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence 9999999999998 89999999999999876 5668999999999999999999999886 9999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC
Q psy11230 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL 539 (553)
Q Consensus 477 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 539 (553)
.||||+|+..|+.+++++|+++|++++..+. .|.|||++|+.+|+.++|++|+++|++.
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~----~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDA----TDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS----SSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccCCCC----CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999999999999999999999887 8999999999999999999999999874
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-43 Score=329.43 Aligned_cols=219 Identities=24% Similarity=0.301 Sum_probs=163.0
Q ss_pred HHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCc
Q psy11230 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303 (553)
Q Consensus 225 v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~ 303 (553)
++.|++.|++++.++..|.||||+|+..|+.+++++|+++|+++..... +.+||++|+..++.+++++|++..
T Consensus 149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~------ 222 (373)
T 2fo1_E 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST------ 222 (373)
T ss_dssp HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH------
T ss_pred HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcC------
Confidence 3556666777777777777777777777777777777766665543322 334444444444443333333320
Q ss_pred cccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCccccCCCCCc
Q psy11230 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLVKHGADVNVIDNQGQM 380 (553)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~ 380 (553)
..+.+++..+..|.||||+|+..+ +.+++++|++.|++++..+.
T Consensus 223 -----------------------------~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~---- 269 (373)
T 2fo1_E 223 -----------------------------KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA---- 269 (373)
T ss_dssp -----------------------------HHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----
T ss_pred -----------------------------ccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----
Confidence 001456777778888888888877 77888888888877765321
Q ss_pred HHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCC-CCccccccCCCCHHHHHHHhCCHHHH
Q psy11230 381 PLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIV 459 (553)
Q Consensus 381 ~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v 459 (553)
...+..+..|.||||+|+..|+.+++++|++++ ++++.++..|+||||+|+..|+.+++
T Consensus 270 --------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv 329 (373)
T 2fo1_E 270 --------------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 329 (373)
T ss_dssp --------------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred --------------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHH
Confidence 112446778999999999999999999999865 99999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502 (553)
Q Consensus 460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 502 (553)
++|+++|++++.++..|.|||++|+.+|+.+++++|+++|++.
T Consensus 330 ~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 330 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999998763
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-41 Score=306.85 Aligned_cols=260 Identities=33% Similarity=0.389 Sum_probs=217.9
Q ss_pred CchhhHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCC
Q psy11230 209 GGQLLLHLVRNGHQNAVKLILEKGANVHAK-DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQH 286 (553)
Q Consensus 209 ~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~ 286 (553)
+.++|+.|+..|+.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|.++..... +.+|+++|+..++
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence 457788888888888888888888888777 67788888888888888888888888776544322 3444444444444
Q ss_pred HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230 287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366 (553)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~ 366 (553)
. +++++|+++|.+++..+..|.|||++|+..|+.+++++|++
T Consensus 85 ~--------------------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 85 V--------------------------------------KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp H--------------------------------------HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred H--------------------------------------HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 3 55555555566677777888889999999999999999999
Q ss_pred CCCCcccc----------CCCCCcHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCC----HHHHHHHH
Q psy11230 367 HGADVNVI----------DNQGQMPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKN----MSALNYLL 430 (553)
Q Consensus 367 ~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll 430 (553)
.|++++.. +..|.|||+.|+..++.+++ .+++. +.+++..+..|+||||.|+..++ .+++++|+
T Consensus 127 ~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll 206 (285)
T 1wdy_A 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206 (285)
T ss_dssp TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH
T ss_pred hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH
Confidence 88888776 67788999999999998888 45555 88999999999999999999998 89999999
Q ss_pred hCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccccc
Q psy11230 431 EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK-FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506 (553)
Q Consensus 431 ~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 506 (553)
++|++++.++..|+||||+|+..|+.+++++|++ .|++++.++..|.|||++|+..++.+++++|+++|++++..+
T Consensus 207 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999998764
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-41 Score=301.41 Aligned_cols=208 Identities=27% Similarity=0.325 Sum_probs=130.4
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHH
Q psy11230 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAV 418 (553)
Q Consensus 340 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~ 418 (553)
..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++ .|++.|++++..+..|.|||++|+
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666655 455566666666666666666666
Q ss_pred hcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q psy11230 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498 (553)
Q Consensus 419 ~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~ 498 (553)
..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 6666666666666666655432 366666666666666666666666666666666666666666666666666666666
Q ss_pred cCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 499 g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
|++++. +. .|.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|
T Consensus 213 ga~~~~-~~----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 213 GADVNQ-GK----GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262 (285)
T ss_dssp TCCTTC-CB----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred CCCCCC-CC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence 666653 22 566666666666666666666666666666666666666654
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.9e-41 Score=297.71 Aligned_cols=232 Identities=29% Similarity=0.382 Sum_probs=173.3
Q ss_pred CCccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcC
Q psy11230 3 ADVNATNKEGITLFQQAIVSS-------------QTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYN 68 (553)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~ 68 (553)
+|+|.+|.+|.||||.|+..| +.++|++|++.|++++...+..|.||||+|+..|+ ++|++|++.|
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 489999999999999999987 89999999999999977668899999999999999 9999999999
Q ss_pred CCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCC-CccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230 69 VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGY 147 (553)
Q Consensus 69 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 147 (553)
++++..+..|+||||+|+.. ++.+++++|++.|. +++.++..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~--- 155 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD--- 155 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT---
T ss_pred CCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC---
Confidence 99999999999999999999 99999999999987 8999999999999999999999999999999888765554
Q ss_pred cHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHH
Q psy11230 148 NALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKL 227 (553)
Q Consensus 148 t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~ 227 (553)
.|.|||++|+..|+.+++++|++.|++++. ....+.++++.|+..|+.+++++
T Consensus 156 ----------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-----~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 156 ----------------------LGKSALHWAAAVNNVDAAVVLLKNGANKDM-----QNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp ----------------------TSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred ----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----cCCCCCCHHHHHHHCCCHHHHHH
Confidence 456677888889999999999999988764 24567889999999999999999
Q ss_pred HHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy11230 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266 (553)
Q Consensus 228 Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~ 266 (553)
|+++|++++.++..|.||+++|+..|+.+++++|.....
T Consensus 209 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999987644
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=299.63 Aligned_cols=229 Identities=25% Similarity=0.352 Sum_probs=207.8
Q ss_pred ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHH
Q psy11230 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPL 382 (553)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l 382 (553)
....+..|.||||+|+..+.. +++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L 129 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQ--LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 129 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCH--HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred ccCCCccCCCHHHHHHHcCCH--HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 345677888999999988865 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHH
Q psy11230 383 HIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461 (553)
Q Consensus 383 ~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 461 (553)
++|+..++.+++ .|++.+.+++..+ .|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++
T Consensus 130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999988 6778898887654 49999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc-CCCCC
Q psy11230 462 LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY-NPDLD 540 (553)
Q Consensus 462 L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~ 540 (553)
|+++|++++. +..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+ ++.+++++|+++ |+++.
T Consensus 209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~----~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 209 LLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA----EGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 9999999985 88899999999999999999999999999999888 8999999999 557999999998 77754
Q ss_pred C
Q psy11230 541 V 541 (553)
Q Consensus 541 ~ 541 (553)
.
T Consensus 282 ~ 282 (285)
T 3d9h_A 282 K 282 (285)
T ss_dssp -
T ss_pred C
Confidence 3
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=293.51 Aligned_cols=235 Identities=25% Similarity=0.345 Sum_probs=211.9
Q ss_pred CCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy11230 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388 (553)
Q Consensus 309 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 388 (553)
.|.||||+|+..+.. +++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQ--LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCH--HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCH--HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 467888888887765 888888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q psy11230 389 GYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467 (553)
Q Consensus 389 ~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~ 467 (553)
++.+++ .+++.|++++.. ..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|+
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp TCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 999988 677888888754 458999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC--------C
Q psy11230 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD--------L 539 (553)
Q Consensus 468 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--------~ 539 (553)
+++. +..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+.++. ++++|++++.. +
T Consensus 159 ~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~----~g~tpl~~A~~~~~--~~~~ll~~~~~~~l~~~~~~ 231 (261)
T 2xai_A 159 DVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNA----EGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRL 231 (261)
T ss_dssp CTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCGGGGSCTTCT--HHHHHHHC-CCCCHHHHHHH
T ss_pred CCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCChhhhcccccc--HHHHHHhccCCccHHHHHHH
Confidence 9985 78899999999999999999999999999999888 89999999997664 89999998874 4
Q ss_pred CCCCCCCCCCCCCC
Q psy11230 540 DVKDKNGNTALHPS 553 (553)
Q Consensus 540 ~~~~~~~~t~l~~a 553 (553)
..+|..|.||+|.|
T Consensus 232 ~~r~~~g~t~l~~~ 245 (261)
T 2xai_A 232 RIRKCFGIQQHHKI 245 (261)
T ss_dssp HHHTTSCTTCGGGG
T ss_pred HHHHHhchhccccC
Confidence 57899999999964
No 15
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-39 Score=286.74 Aligned_cols=212 Identities=29% Similarity=0.452 Sum_probs=118.6
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHH
Q psy11230 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHI 416 (553)
Q Consensus 338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~ 416 (553)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|||++|+..++.+++ .+++.|.+++..+..|.||||+
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 444455555555555555555555555555555555555555555555555555554 3444555555555555555555
Q ss_pred HHhcCCHHHHHHHHhCC-CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy11230 417 AVEQKNMSALNYLLEHG-AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495 (553)
Q Consensus 417 a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~L 495 (553)
|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 55555555555555555 45555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 496 l~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|
T Consensus 164 l~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 164 LAAKCDLHAVNI----HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp HTTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred HHcCCCCCCcCC----CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 555555555544 455555555555555555555555555555555555555543
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.3e-40 Score=290.65 Aligned_cols=232 Identities=28% Similarity=0.328 Sum_probs=183.3
Q ss_pred ccccCCCCCchHHHHHhcc-----------ccChHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy11230 303 INTKGPTNKAPLHLVVQRK-----------SWNTTMFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGAD 370 (553)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~ 370 (553)
++..+..|.||||+|+..+ ..+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4556777888888888766 3355999999999999865 488999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-CCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHH
Q psy11230 371 VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLY 448 (553)
Q Consensus 371 ~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 448 (553)
++..+..|+||||+|+..++.+++ .|++.+. +++..+..|.||||+|+..++.+++++|+++|++++..+..|+||||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 999999999999999999999988 5667776 88999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHH
Q psy11230 449 IAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV 528 (553)
Q Consensus 449 ~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 528 (553)
+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+++|+.++
T Consensus 163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHHDI 238 (253)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc----CCCCHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999887 89999999999999999
Q ss_pred HHHHHhcCCC
Q psy11230 529 INKLLDYNPD 538 (553)
Q Consensus 529 v~~Ll~~g~~ 538 (553)
+++|.+....
T Consensus 239 ~~~l~~~~~~ 248 (253)
T 1yyh_A 239 VRLLDLEHHH 248 (253)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=287.99 Aligned_cols=204 Identities=27% Similarity=0.333 Sum_probs=194.4
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCC
Q psy11230 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKN 422 (553)
Q Consensus 344 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 422 (553)
.|+||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++ .|++.|++++..+..|+||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 578999999999999999999999999999999999999999999999988 7789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502 (553)
Q Consensus 423 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 502 (553)
.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 9999999999999975 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 503 ~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
+. +. .|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus 161 ~~-~~----~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 206 (261)
T 2xai_A 161 NQ-GK----GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV 206 (261)
T ss_dssp TC-CB----TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred CC-CC----CCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhc
Confidence 96 33 799999999999999999999999999999999999999987
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.3e-39 Score=295.34 Aligned_cols=244 Identities=24% Similarity=0.255 Sum_probs=181.9
Q ss_pred cccCCCCCchHHHHHhccccChHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCc
Q psy11230 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN---VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380 (553)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 380 (553)
...+..|.||||+|+..++. +++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHE--PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCH--HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 45677788888888887765 888888888777 6777788888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchHHH-HHHcCCCCCC-------------CCCCCChHHHHHHhcCCH-HHHHHHHhCCCCccccccCCCC
Q psy11230 381 PLHIAVQNGYVAIPN-LIRHGANVNA-------------RNKYAKTPLHIAVEQKNM-SALNYLLEHGAQVDARTQLGKD 445 (553)
Q Consensus 381 ~l~~a~~~~~~~~~~-ll~~~~~~~~-------------~~~~~~~~l~~a~~~~~~-~~~~~Ll~~g~~~~~~~~~~~t 445 (553)
|||+|+..++.+++. ++..+.+... ....+.++++.++..+.. .....+...+.+++..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 888888888888774 4455544321 112344555555544433 3333444466778889999999
Q ss_pred HHHHHHHhCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524 (553)
Q Consensus 446 ~l~~A~~~~~~~~v~~L~~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~ 524 (553)
|||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+.+|
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~----~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----GGRTPLGSALLRP 236 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHTSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc----CCCCHHHHHHHcC
Confidence 99999999999999999999999999885 499999999999999999999999999999887 8999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 525 NEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 525 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
+.+++++|+++|++++.+|.+|.|||++|
T Consensus 237 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 237 NPILARLLRAHGAPEPEDGGDKLSPCSSS 265 (282)
T ss_dssp CHHHHHHHHHTTCCCCCCC----------
T ss_pred CcHHHHHHHHcCCCcCcCCCccccccccc
Confidence 99999999999999999999999999986
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.2e-38 Score=281.71 Aligned_cols=209 Identities=29% Similarity=0.423 Sum_probs=122.8
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHH
Q psy11230 341 KDDENKTPLHIAIESQCWDAVSLLVK----HGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLH 415 (553)
Q Consensus 341 ~~~~~~t~l~~a~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~ 415 (553)
.|..|.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+..++.+++ .|++.|++++..+..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 44555566666666666665555554 4555555555566666666666655555 444555555555555666666
Q ss_pred HHHhcCCHHHHHHHHhCCC----CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCHH
Q psy11230 416 IAVEQKNMSALNYLLEHGA----QVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVA 490 (553)
Q Consensus 416 ~a~~~~~~~~~~~Ll~~g~----~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A~~~~~~~ 490 (553)
+|+..++.+++++|++++. +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 6666666666666665554 555555556666666666666666666666666655555 55566666666666666
Q ss_pred HHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 491 ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 491 ~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 165 ~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMY----SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223 (241)
T ss_dssp HHHHHHHTTCCTTCBCT----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred HHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence 66666666666555544 555666666666666666666666666666666666666654
No 20
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.5e-40 Score=307.37 Aligned_cols=265 Identities=18% Similarity=0.175 Sum_probs=222.5
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT 80 (553)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t 80 (553)
+.+++.+|.+|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++. ..|.|
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t 86 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK 86 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCC
Confidence 4678999999999999999999999999999999999988 8999999999999999 999999999996654 47899
Q ss_pred HHHHHHhhcCCChHHHHHHhhC----CCCccC-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHhcCC
Q psy11230 81 VLHTVASIKTRDPTAVEILKTN----RANVNI-----------------KNKEGDTPLHIAARTG--NYKMVRVLIDHGA 137 (553)
Q Consensus 81 ~l~~a~~~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~t~L~~A~~~g--~~~iv~~Ll~~~~ 137 (553)
|||+|+.. ++.+++++|++. |.+++. ++..|.||||+|+..| +.++|++|+++|+
T Consensus 87 ~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 87 PIHLAVMA--NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 99999999 999999999999 888777 8889999999999999 9999999999998
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHH
Q psy11230 138 HTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217 (553)
Q Consensus 138 ~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~ 217 (553)
+++.++. .|.|||++|+..|+.+++++|++.|++............+.++|+.|+
T Consensus 165 ~~~~~d~-------------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~ 219 (364)
T 3ljn_A 165 SPTAKDK-------------------------ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219 (364)
T ss_dssp CTTCCCT-------------------------TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH
T ss_pred CCcccCC-------------------------CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH
Confidence 8775554 456678889999999999999999988332222334667889999999
Q ss_pred HcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc-------------ccccCCHHHHHHHh
Q psy11230 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS-------------LQFIHSPLHLAIEK 284 (553)
Q Consensus 218 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~-------------~~~~~~~l~~a~~~ 284 (553)
..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++++.++.. ...+.++++.|+..
T Consensus 220 ~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~ 299 (364)
T 3ljn_A 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299 (364)
T ss_dssp TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhc
Confidence 99999999999999999999999999999999999999999999998764311 11134556556666
Q ss_pred CCHHHHHHHHHh
Q psy11230 285 QHIAIVQLLLRR 296 (553)
Q Consensus 285 ~~~~~~~~l~~~ 296 (553)
++.+.+..|+..
T Consensus 300 ~~~~~v~~ll~~ 311 (364)
T 3ljn_A 300 PSKQEVLQLLQE 311 (364)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 655555555444
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-38 Score=280.87 Aligned_cols=228 Identities=21% Similarity=0.272 Sum_probs=204.4
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTV 81 (553)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~ 81 (553)
++++.+|.+|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 688999999999999999999999999999999999988 8899999999999999 99999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHhhCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhC
Q psy11230 82 LHTVASIKTRDPTAVEILKTNR-ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRK 160 (553)
Q Consensus 82 l~~a~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~ 160 (553)
||+|+.. ++.+++++|++.| .+++.++..|+||||+|+..|+.+++++|++.|++++.++..
T Consensus 81 L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--------------- 143 (237)
T 3b7b_A 81 LHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE--------------- 143 (237)
T ss_dssp HHHHHHT--TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT---------------
T ss_pred HHHHHHc--CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC---------------
Confidence 9999998 9999999999998 899999999999999999999999999999999887655544
Q ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q psy11230 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQ 240 (553)
Q Consensus 161 ~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~ 240 (553)
|.|||++|+..|+.+++++|++.|++++.. ...+.++++.|+..|+.+++++|+++|++++.++.
T Consensus 144 ----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~ 208 (237)
T 3b7b_A 144 ----------ENICLHWAAFSGCVDIAEILLAAKCDLHAV-----NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208 (237)
T ss_dssp ----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCC-----CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred ----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-----CCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCC
Confidence 556777888889999999999988877642 44567888888888888999999988888888888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHh
Q psy11230 241 LCKTALDIAVEHGHLKIVEFLLD 263 (553)
Q Consensus 241 ~~~~~l~~A~~~~~~e~v~~Ll~ 263 (553)
.|.|||++|+..++.+.+..+++
T Consensus 209 ~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 209 EGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999888888766655543
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=290.22 Aligned_cols=205 Identities=27% Similarity=0.292 Sum_probs=96.0
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCC--------ccccCCCCCcHHHHHHHcCCch--HHHHHHcCCCCCCCCCCCChHH
Q psy11230 345 NKTPLHIAIESQCWDAVSLLVKHGAD--------VNVIDNQGQMPLHIAVQNGYVA--IPNLIRHGANVNARNKYAKTPL 414 (553)
Q Consensus 345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~--------~~~~~~~~~~~l~~a~~~~~~~--~~~ll~~~~~~~~~~~~~~~~l 414 (553)
+.++|+.|+..|+.++|++|++.|.+ ++..+..+.+||+.|+..+... +..++..|++++.++..|+|||
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL 90 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL 90 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 34455555555555555555554443 2233344455555555444332 2244455555555555555555
Q ss_pred HHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy11230 415 HIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILEC 494 (553)
Q Consensus 415 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~ 494 (553)
|+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~ 170 (269)
T 4b93_B 91 HVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL 170 (269)
T ss_dssp HHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 495 LLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 495 Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
|+++|++++..+. .|.||||+|+..|+.++|++|+++|++++++|.+|+||||+|
T Consensus 171 Ll~~gadvn~~~~----~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 171 LLQHGASINASNN----KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp HHHTTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred HHHCCCCCCcccc----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 5555555555444 455555555555555555555555555555555555555544
No 23
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-39 Score=306.79 Aligned_cols=243 Identities=20% Similarity=0.277 Sum_probs=213.1
Q ss_pred ccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHH
Q psy11230 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPL 382 (553)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l 382 (553)
....+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. ..|.|||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~--~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L 88 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQT--DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI 88 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCH--HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred ccccCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence 444566778888888888765 888888888888888888999999999999999999999998886543 4688999
Q ss_pred HHHHHcCCchHH-HHHHc----CCCCCC-----------------CCCCCChHHHHHHhcC--CHHHHHHHHhCCCCccc
Q psy11230 383 HIAVQNGYVAIP-NLIRH----GANVNA-----------------RNKYAKTPLHIAVEQK--NMSALNYLLEHGAQVDA 438 (553)
Q Consensus 383 ~~a~~~~~~~~~-~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~ 438 (553)
|+|+..++.+++ .|++. +.+++. .+..|.||||+|+..| +.+++++|+++|++++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~ 168 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence 999999998888 55555 666665 7888999999999999 99999999999999999
Q ss_pred cccCCCCHHHHHHHhCCHHHHHHHHhcCCC-----CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCC
Q psy11230 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKAN-----VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513 (553)
Q Consensus 439 ~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~ 513 (553)
.+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~----~g 244 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN----EH 244 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT----TS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CC
Confidence 999999999999999999999999999998 999999999999999999999999999999999999887 89
Q ss_pred CcHHHHHHhhCCHHHHHHHHhcCCCCCC------------CCCCCCCCCCCC
Q psy11230 514 YTPLHLAVESNNEAVINKLLDYNPDLDV------------KDKNGNTALHPS 553 (553)
Q Consensus 514 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~~~t~l~~a 553 (553)
.||||+|+..|+.++|++|+++|++++. .+..+.|||+.|
T Consensus 245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 296 (364)
T 3ljn_A 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296 (364)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCS
T ss_pred CCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhh
Confidence 9999999999999999999999876433 455677887654
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.5e-39 Score=282.69 Aligned_cols=228 Identities=29% Similarity=0.390 Sum_probs=201.8
Q ss_pred ccCCCCCchHHHHHhccccChHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCc
Q psy11230 305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLY----HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM 380 (553)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 380 (553)
..+..|.||||+|+..+.. +++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNL--PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp ---CTTCCHHHHHHHTTCH--HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccCCCCCcHHHHHHHcCCH--HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 3456677777777777654 66666665 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHH-HHHHcCC----CCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHhC
Q psy11230 381 PLHIAVQNGYVAIP-NLIRHGA----NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMH 454 (553)
Q Consensus 381 ~l~~a~~~~~~~~~-~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~ 454 (553)
|||+|+..++.+++ .++..+. +++..+..|.||||+|+..++.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 99999999999988 5667766 788889999999999999999999999999999999988 78999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534 (553)
Q Consensus 455 ~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 534 (553)
+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+..|+.++++.|++
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC----HNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCTTTTCSSHHHHHHHTC---
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCC----CCCCHHHHHHhcCcHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999887 89999999999999999999999
Q ss_pred cCCC
Q psy11230 535 YNPD 538 (553)
Q Consensus 535 ~g~~ 538 (553)
.+++
T Consensus 238 ~~aS 241 (241)
T 1k1a_A 238 RPAS 241 (241)
T ss_dssp ----
T ss_pred CCCC
Confidence 8763
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.3e-38 Score=276.00 Aligned_cols=198 Identities=31% Similarity=0.366 Sum_probs=181.1
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHH
Q psy11230 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHI 416 (553)
Q Consensus 338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~ 416 (553)
++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..++.+++ .++++|.+++..+..|.||||+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 112 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 345677788889999999999999999998888888888888999999988888887 6778888888889999999999
Q ss_pred HHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy11230 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496 (553)
Q Consensus 417 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 496 (553)
|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus 113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 192 (231)
T 3aji_A 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC
Q psy11230 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL 539 (553)
Q Consensus 497 ~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 539 (553)
++|++++..+. .|.|||++|+..++.+++++|+++|+++
T Consensus 193 ~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 193 TQGASIYIENK----EEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp HTTCCSCCCCT----TSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCCCCCC----CCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 99999998877 8999999999999999999999998864
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-37 Score=273.07 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=176.4
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCCCcHHHHHHHcCCchHH-HHHHcC--CCCCC-CCCCCChHHHHHHh
Q psy11230 345 NKTPLHIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIP-NLIRHG--ANVNA-RNKYAKTPLHIAVE 419 (553)
Q Consensus 345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~-~ll~~~--~~~~~-~~~~~~~~l~~a~~ 419 (553)
|.||||.|+..|+.+++++|++.+.+... .+..|+||||+|+..++.+++ .+++.+ .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 56788888888888888888887766544 677888888888888888877 566777 44544 67788999999999
Q ss_pred cCCHHHHHHHHhCC--CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy11230 420 QKNMSALNYLLEHG--AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497 (553)
Q Consensus 420 ~~~~~~~~~Ll~~g--~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~ 497 (553)
.|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999988 8888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCcccccccccCCCCcHHHHHHhhCCHHHHHHHH-hcCCCCCCCCCCCCCCCCCC
Q psy11230 498 NK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLL-DYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 498 ~g-~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~l~~a 553 (553)
+| ++++..+. .|.||||+|+..|+.+++++|+ ++|++++.+|.+|.||||+|
T Consensus 162 ~g~~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A 215 (228)
T 2dzn_A 162 LGKSAVNWQDK----QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215 (228)
T ss_dssp TTCCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred cCcccccCcCC----CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence 98 88888777 8889999999999999999999 88999999999999999886
No 27
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-37 Score=282.45 Aligned_cols=248 Identities=20% Similarity=0.201 Sum_probs=165.9
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGAN---INDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT 80 (553)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t 80 (553)
+|.+|.+|.||||+||..|+.++|++|++.|++ ++.. +..|.||||+|+..|+ ++|++|+++|++++..+..|+|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 578999999999999999999999999999998 6666 8899999999999999 9999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHhhCCCCccC-------------CCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCCCCCCCC
Q psy11230 81 VLHTVASIKTRDPTAVEILKTNRANVNI-------------KNKEGDTPLHIAARTGN-YKMVRVLIDHGAHTECKNHQG 146 (553)
Q Consensus 81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~-------------~~~~~~t~L~~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~ 146 (553)
|||+|+.. ++.+++++|++.|++... ....+.++++.++..+. ..+...+...+++++..+..|
T Consensus 81 pL~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 81 ALHLACRV--RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp HHHHHTTT--TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred HHHHHHHc--CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 99999998 999999999998866321 12233445555444432 233333444555666666666
Q ss_pred CcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHH
Q psy11230 147 YNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226 (553)
Q Consensus 147 ~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~ 226 (553)
.||| ++|+..|+.+++++|++.|++++... ...+.+||+.|+..|+.++++
T Consensus 159 ~t~L-------------------------~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~~g~tpL~~A~~~~~~~~v~ 209 (282)
T 1oy3_D 159 HTPL-------------------------HVAVIHKDAEMVRLLRDAGADLNKPE----PTCGRTPLHLAVEAQAASVLE 209 (282)
T ss_dssp CCHH-------------------------HHHHHTTCHHHHHHHHHHTCCTTCCC----TTTCCCHHHHHHHTTCHHHHH
T ss_pred cCHH-------------------------HHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcCHHHHHHHcCCHHHHH
Confidence 6653 34455666666666666666654310 122556666777777777777
Q ss_pred HHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHh
Q psy11230 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEK 284 (553)
Q Consensus 227 ~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~ 284 (553)
+|+++|++++.++..|.|||++|+..|+.+++++|+++|+++..... +.+|+++|...
T Consensus 210 ~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred HHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 77777777777777777777777777777777777777776665544 55666655443
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.8e-37 Score=271.98 Aligned_cols=208 Identities=26% Similarity=0.305 Sum_probs=197.7
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHh
Q psy11230 342 DDENKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVE 419 (553)
Q Consensus 342 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~ 419 (553)
+..+.++|+.|+..|+.+.+++|++.+.. .+..+..|.||||+|+..|+.+++ .+++.|.+++..+..|+||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 34578999999999999999999987544 667788999999999999999988 6779999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Q psy11230 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499 (553)
Q Consensus 420 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g 499 (553)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus 83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 500 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 163 ~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 212 (231)
T 3aji_A 163 ASTNIQDT----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212 (231)
T ss_dssp CCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred CCccccCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999877 899999999999999999999999999999999999999976
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.2e-37 Score=268.87 Aligned_cols=211 Identities=29% Similarity=0.345 Sum_probs=199.6
Q ss_pred HHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-C
Q psy11230 326 TMFKTLLYHGANVNVK-DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-N 402 (553)
Q Consensus 326 ~~~~~l~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~ 402 (553)
+++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..++.+++ .+++.+. +
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 84 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 6777888889988765 78999999999999999999999999999999999999999999999999988 5667766 8
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482 (553)
Q Consensus 403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~ 482 (553)
++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 164 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540 (553)
Q Consensus 483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 540 (553)
|+..++.+++++|+++|++++..+. .|.|||++|++.|+.+++++|+++|+...
T Consensus 165 A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 165 AAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHcCCHHHHHHHHHcCCCCccccc----cCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 9999999999999999999998877 89999999999999999999999999643
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=280.75 Aligned_cols=232 Identities=26% Similarity=0.355 Sum_probs=148.1
Q ss_pred cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy11230 274 IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353 (553)
Q Consensus 274 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~ 353 (553)
..++|+.|+..|+.+++++|++.+...... ....++..+..+.|||+.|+
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~------------------------------~~~~~~~~~~~~~t~L~~a~ 60 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLED------------------------------AEDTVSAADPEFCHPLCQCP 60 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCccccc------------------------------ccccccccCccCCCHHHHHH
Confidence 446788888888888888888764321110 00112334556667777777
Q ss_pred HcCCH-HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q psy11230 354 ESQCW-DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431 (553)
Q Consensus 354 ~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 431 (553)
..+.. .++++|++.|++++..+.+|+||||+|+..|+.+++ .|+..+++++..+..|.||++.|+..++.+++++|++
T Consensus 61 ~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~ 140 (269)
T 4b93_B 61 KCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140 (269)
T ss_dssp --------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH
Confidence 66654 367777777777777777777777777777777776 5667777777777788888888888888888888888
Q ss_pred CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccC
Q psy11230 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511 (553)
Q Consensus 432 ~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 511 (553)
+|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 141 ~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~---- 216 (269)
T 4b93_B 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK---- 216 (269)
T ss_dssp TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT----
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888887776
Q ss_pred CCCcHHHHHHhhCC-HHHHHHHHhcCCCC
Q psy11230 512 KGYTPLHLAVESNN-EAVINKLLDYNPDL 539 (553)
Q Consensus 512 ~~~t~l~~A~~~~~-~~~v~~Ll~~g~~~ 539 (553)
.|.||||+|+++++ .+++++|.+.++.+
T Consensus 217 ~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 217 RQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp TSCCSGGGSCTTCHHHHHTTC--------
T ss_pred CCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 78888888887775 34555555555543
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=268.24 Aligned_cols=232 Identities=27% Similarity=0.336 Sum_probs=210.1
Q ss_pred ccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC-CCCcHHH
Q psy11230 305 TKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN-QGQMPLH 383 (553)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~ 383 (553)
..+..+.++|+.|+..+.. +++++|++.|.+++..+..|.|||++|+..|+.+++++|++.|.+++.... .|.|||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~--~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIY--ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccchHHHHHHHcCCh--HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 3466778888888888866 889999999999999999999999999999999999999999998876554 4899999
Q ss_pred HHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCC-HHHHHH
Q psy11230 384 IAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN-LSIVEQ 461 (553)
Q Consensus 384 ~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-~~~v~~ 461 (553)
.|+..++.+++ .+++.|++++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence 99999999988 6778999999999999999999999999999999999999999999999999999997766 899999
Q ss_pred HHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230 462 LLKFKANVNSSDQ-FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540 (553)
Q Consensus 462 L~~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 540 (553)
|++.|++++..+. .|.||||+|+..++.+++++|+++|++++..+. .|.|||++|++.|+.+++++|+++|++..
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI----KGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 9999999999887 899999999999999999999999999999887 89999999999999999999999998865
Q ss_pred CC
Q psy11230 541 VK 542 (553)
Q Consensus 541 ~~ 542 (553)
..
T Consensus 238 ~~ 239 (240)
T 3eu9_A 238 YD 239 (240)
T ss_dssp --
T ss_pred cC
Confidence 54
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=267.94 Aligned_cols=233 Identities=23% Similarity=0.289 Sum_probs=206.8
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCC-CCCcH
Q psy11230 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDN-LGNTV 81 (553)
Q Consensus 4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~-~~~t~ 81 (553)
+++..|..|.|+|+.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++.... .|.||
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence 46788999999999999999999999999999999988 8899999999999999 999999999999886654 59999
Q ss_pred HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCC
Q psy11230 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKG 161 (553)
Q Consensus 82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~ 161 (553)
||+|+.. ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus 80 L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g--------------- 142 (240)
T 3eu9_A 80 LHWATRQ--GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG--------------- 142 (240)
T ss_dssp HHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS---------------
T ss_pred hHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC---------------
Confidence 9999999 99999999999999999999999999999999999999999999998877665555
Q ss_pred CCccccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCC
Q psy11230 162 ADINVENNFGKTAFQMAYEMKN-FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQ 240 (553)
Q Consensus 162 ~~~~~~~~~~~~~l~~A~~~g~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~ 240 (553)
.||+++|+..++ .+++++|++.+++++... ...+.++|+.|+..|+.+++++|+++|++++.++.
T Consensus 143 ----------~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 208 (240)
T 3eu9_A 143 ----------MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208 (240)
T ss_dssp ----------CCHHHHHHHHCCSSTTHHHHHHTTCCTTCCC----TTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT
T ss_pred ----------CcHHHHHHHhCChHHHHHHHHhcCCCcchhh----ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 556667775554 889999999998877521 23567899999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy11230 241 LCKTALDIAVEHGHLKIVEFLLDHGACV 268 (553)
Q Consensus 241 ~~~~~l~~A~~~~~~e~v~~Ll~~~~~~ 268 (553)
.|.|||++|+..|+.+++++|++.+...
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 9999999999999999999999987643
No 33
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.2e-36 Score=260.27 Aligned_cols=202 Identities=27% Similarity=0.325 Sum_probs=125.9
Q ss_pred CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCC-CCcccCCCC
Q psy11230 2 DADVNAT-NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNV-DVNAVDNLG 78 (553)
Q Consensus 2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~-~~~~~~~~~ 78 (553)
|++++.+ |..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.+. +++..+..|
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 92 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 4444443 555555555555555555555555555555554 5555555555555555 55555555544 455555555
Q ss_pred CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHH
Q psy11230 79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILL 158 (553)
Q Consensus 79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~ 158 (553)
.||||+|+.. ++.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.++..
T Consensus 93 ~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~------------- 157 (223)
T 2f8y_A 93 TTPLILAARL--AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR------------- 157 (223)
T ss_dssp CCHHHHHHHH--TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-------------
T ss_pred CcHHHHHHHh--CcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-------------
Confidence 5555555555 5555555555555555555555555555555555555555555555554433333
Q ss_pred hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCC
Q psy11230 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAK 238 (553)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~ 238 (553)
+.++++.|+..|+.+++++|+++|++++.+
T Consensus 158 --------------------------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 187 (223)
T 2f8y_A 158 --------------------------------------------------EETPLFLAAREGSYETAKVLLDHFANRDIT 187 (223)
T ss_dssp --------------------------------------------------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred --------------------------------------------------CcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 344555556667777888888888888888
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy11230 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269 (553)
Q Consensus 239 ~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~ 269 (553)
+..|.||+++|+..++.+++++|+++|....
T Consensus 188 ~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 8889999999999999999999999887543
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-36 Score=278.50 Aligned_cols=231 Identities=30% Similarity=0.381 Sum_probs=154.0
Q ss_pred CCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy11230 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388 (553)
Q Consensus 309 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 388 (553)
.+.+||+.|+..+.. +++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus 39 ~~~t~l~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 39 DDGAVFLAACSSGDT--EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (299)
T ss_dssp CHHHHHHHHHHHTCH--HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCccHHHHHHHcCCH--HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 344555555555543 566666666666666666666677777766777777777766666666666666666666666
Q ss_pred CCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHh-CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-
Q psy11230 389 GYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF- 465 (553)
Q Consensus 389 ~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~- 465 (553)
|+.+++ .|+.+|++++..+..|.|||++|+..++.+++++++. .+.+++..+..+.+++.. .+..++..
T Consensus 117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 188 (299)
T 1s70_B 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSG 188 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhcc
Confidence 666666 4556666666666666677776666666666666654 445544333222222221 22223333
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCC
Q psy11230 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN 545 (553)
Q Consensus 466 g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 545 (553)
.......+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++|++|+++|++++.+|..
T Consensus 189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~ 264 (299)
T 1s70_B 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY----DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264 (299)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCC
Confidence 333344566788888888888888888888888888887766 7888888888888888888888888888888888
Q ss_pred CCCCCCCC
Q psy11230 546 GNTALHPS 553 (553)
Q Consensus 546 ~~t~l~~a 553 (553)
|.||||+|
T Consensus 265 g~t~l~~A 272 (299)
T 1s70_B 265 GQTAFDVA 272 (299)
T ss_dssp SCCTTTSC
T ss_pred CCCHHHHH
Confidence 88888876
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.8e-37 Score=274.74 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=155.4
Q ss_pred CCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCc
Q psy11230 37 NINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDT 115 (553)
Q Consensus 37 ~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t 115 (553)
+++.. +..|.||||+|+..|+ ++|++|++.|++++..+ |+||||+|+.. ++.+++++|+++|++++.++..|+|
T Consensus 23 ~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~t 97 (285)
T 3kea_A 23 DTFKA-DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDTKIVKILLFSGLDDSQFDDKGNT 97 (285)
T ss_dssp TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS--SSCHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCc
Confidence 34444 6677777777777777 77777777777776663 67777777776 7777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCC-CCHHHHHHHcCCHHHHHHHHHcC
Q psy11230 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG-KTAFQMAYEMKNFPAIELFLKYG 194 (553)
Q Consensus 116 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~-~~~l~~A~~~g~~~~~~~Ll~~~ 194 (553)
|||+|+..|+.+++++|+++|++++.++. .| .|||++|+..|+.+++++|++.|
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-------------------------~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGK-------------------------TGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCSS-------------------------SGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCC-------------------------CCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 77777777777777777777666554433 33 35566667777777777777776
Q ss_pred CCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCcccc
Q psy11230 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTA-LDIAVEHGHLKIVEFLLDHGACVDSLQF 273 (553)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-l~~A~~~~~~e~v~~Ll~~~~~~~~~~~ 273 (553)
++... ...+.++|+.|+..|+.+++++|+++|++++.++..|.|| |++|+..|+.+++++|+++|+++.....
T Consensus 153 ~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~ 226 (285)
T 3kea_A 153 PSTFD------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226 (285)
T ss_dssp CTTCC------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred Ccccc------ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence 65532 2256677888888888888888888888888888888886 8888888888888888888887766542
Q ss_pred cCCHHHHHHHhCCHHHHHHHHHhc
Q psy11230 274 IHSPLHLAIEKQHIAIVQLLLRRN 297 (553)
Q Consensus 274 ~~~~l~~a~~~~~~~~~~~l~~~~ 297 (553)
.|+..++.+++++|++.+
T Consensus 227 ------~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 227 ------ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp ------GGGTTTCHHHHHHHHHHH
T ss_pred ------hhhhcCCHHHHHHHHHcC
Confidence 345567777777777764
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.6e-37 Score=275.48 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=162.5
Q ss_pred cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcC
Q psy11230 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNN 298 (553)
Q Consensus 219 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~ 298 (553)
..+.+.+..++..+ +++.++..|.||||+|+..|+.+++++|+++|+++...
T Consensus 9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------------------- 60 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--------------------------- 60 (285)
T ss_dssp GCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---------------------------
T ss_pred hcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---------------------------
Confidence 34444444444444 57888999999999999999999999999987755332
Q ss_pred CCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCC
Q psy11230 299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378 (553)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~ 378 (553)
.|.||||+|+..++. +++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 61 ----------~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 128 (285)
T 3kea_A 61 ----------ENEFPLHQAATLEDT--KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128 (285)
T ss_dssp ----------TTCCHHHHHTTSSSC--HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSG
T ss_pred ----------CCCCHHHHHHHcCCH--HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Confidence 144555555555544 66666666677777777777777777777777777777777777777777666
Q ss_pred -CcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCH-HHHHHHhCC
Q psy11230 379 -QMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP-LYIAVEMHN 455 (553)
Q Consensus 379 -~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~ 455 (553)
.||||+|+..++.+++ .|+.+|.+.... ..|.||||+|+..|+.+++++|+++|++++..+..|+|| ||+|+..|+
T Consensus 129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~ 207 (285)
T 3kea_A 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD 207 (285)
T ss_dssp GGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence 5777777777666666 444555444222 156677777777777777777777777777777667665 777777777
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505 (553)
Q Consensus 456 ~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 505 (553)
.+++++|+++|++++..+. .|+..++.+++++|+++|++++..
T Consensus 208 ~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 208 IEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 7777777777777666552 345566777777777777666554
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.5e-36 Score=262.09 Aligned_cols=216 Identities=25% Similarity=0.326 Sum_probs=183.1
Q ss_pred CchHHHHHhccccChHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccc-cCCCCCcHHHHHH
Q psy11230 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVN-VKDDENKTPLHIAIESQCWDAVSLLVKHG--ADVNV-IDNQGQMPLHIAV 386 (553)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~--~~~~~-~~~~~~~~l~~a~ 386 (553)
.||||+|+..+.. ++++.|++.+.++. ..+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+
T Consensus 3 ~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 3 NYPLHQACMENEF--FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp CCHHHHHHHTTCH--HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHhCCH--HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 3444444444433 44444444444433 36778899999999999999999999998 55555 6788999999999
Q ss_pred HcCCchHH-HHHHcC--CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHH
Q psy11230 387 QNGYVAIP-NLIRHG--ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463 (553)
Q Consensus 387 ~~~~~~~~-~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~ 463 (553)
..++.+++ .+++.| .+++..+..|.||||.|+..++.+++++|+++|++++..+..|+||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999888 566666 888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-hccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230 464 KFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLL-VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535 (553)
Q Consensus 464 ~~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 535 (553)
++| ++++.++..|.||||+|+..++.+++++|+ ++|++++..+. .|.|||++|++. +++++|+++
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~----~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN----KGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT----TSCBGGGGCSST---THHHHHHTT
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC----CCCcHHHHHHHH---HHHHHHHhc
Confidence 999 999999999999999999999999999999 89999999887 899999999765 577777764
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.4e-37 Score=270.13 Aligned_cols=210 Identities=27% Similarity=0.353 Sum_probs=189.9
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHH
Q psy11230 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGA----DVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPL 414 (553)
Q Consensus 340 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l 414 (553)
..|..|.||||+|+..|+.+++++|++.+. +++..+..|+||||+|+..++.+++ .|++.|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 357789999999999999999999988754 6888899999999999999999988 56688999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCCC------ccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhC
Q psy11230 415 HIAVEQKNMSALNYLLEHGAQ------VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ-FGRTVLHLAVKIQ 487 (553)
Q Consensus 415 ~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~-~~~t~l~~A~~~~ 487 (553)
|+|+..|+.+++++|+++|.+ ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999999999876 467788899999999999999999999999999999987 9999999999999
Q ss_pred CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC--CCCCCCCCCCCCC
Q psy11230 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD--VKDKNGNTALHPS 553 (553)
Q Consensus 488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~~t~l~~a 553 (553)
+.+++++|+++|++++..+. .|.|||++|+.+|+.+++++|+++|+++. .++..|+||++.+
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTY----QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCT----TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred CHHHHHHHHHcCCCCCcccC----CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 99999999999999999887 89999999999999999999999999765 9999999998863
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-36 Score=274.52 Aligned_cols=247 Identities=26% Similarity=0.301 Sum_probs=187.8
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA 86 (553)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~ 86 (553)
.+..|.|||+.||..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++.|++++..+..|+||||+|+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 4567889999999999999999999999999988 8899999999999999 9999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHHHHhCC-CCc
Q psy11230 87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID-HGAHTECKNHQGYNALHVAVGILLRKG-ADI 164 (553)
Q Consensus 87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~~~~~l~~~~-~~~ 164 (553)
.. ++.+++++|+++|++++.++..|.||||+|+..|+.+++++++. .+.+++.....+.+++...+..++..+ ...
T Consensus 115 ~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 115 SC--GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred Hc--CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 99 99999999999999999999999999999999999999998886 466655444444444444433333333 333
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT 244 (553)
Q Consensus 165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 244 (553)
...+..|.|||++|+..|+.+++++|++.|++++. ....+.+||+.|+..|+.+++++|+++|++++.++..|.|
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-----~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 267 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-----KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-----cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 33445666777777776666666666666666543 1344556666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHh
Q psy11230 245 ALDIAVEHGHLKIVEFLLD 263 (553)
Q Consensus 245 ~l~~A~~~~~~e~v~~Ll~ 263 (553)
||++|+.. ..+.++.+++
T Consensus 268 ~l~~A~~~-~~~~l~~l~~ 285 (299)
T 1s70_B 268 AFDVADED-ILGYLEELQK 285 (299)
T ss_dssp TTTSCCSG-GGHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 66666442 3344444433
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.9e-35 Score=255.64 Aligned_cols=198 Identities=27% Similarity=0.370 Sum_probs=173.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCC-----CCCCCCCChHHHH
Q psy11230 344 ENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANV-----NARNKYAKTPLHI 416 (553)
Q Consensus 344 ~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~-----~~~~~~~~~~l~~ 416 (553)
.|.||||.|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++ .|++.+.++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 467888888888888888888887 888888888888899888888888887 566777765 6667789999999
Q ss_pred HHhcCCHHHHHHHHhCCCCcccccc-------------CCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy11230 417 AVEQKNMSALNYLLEHGAQVDARTQ-------------LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483 (553)
Q Consensus 417 a~~~~~~~~~~~Ll~~g~~~~~~~~-------------~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A 483 (553)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999988765 799999999999999999999999999999999999999999
Q ss_pred HHhCCHHHH----HHHHhccCCcc------cccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCC
Q psy11230 484 VKIQNVAIL----ECLLVNKADIN------AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN 545 (553)
Q Consensus 484 ~~~~~~~~~----~~Ll~~g~~~~------~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 545 (553)
+..++.+++ ++|+++|++++ ..+. .|.||||+|+..|+.++|++|+++|++...+...
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~----~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 229 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN----QGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHH 229 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCT----TSCCHHHHHHHHTCHHHHHHHHHHHHHC------
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCC----CCCCHHHHHHHcCCHHHHHHHHhcCccchhhhcc
Confidence 999999988 99999999884 4444 8999999999999999999999999876655443
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1e-36 Score=280.25 Aligned_cols=264 Identities=16% Similarity=0.179 Sum_probs=174.7
Q ss_pred cCCHHHHHHHHhCCCCCCcccc-cCCHHHHHHHhCCHHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHH
Q psy11230 252 HGHLKIVEFLLDHGACVDSLQF-IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330 (553)
Q Consensus 252 ~~~~e~v~~Ll~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 330 (553)
....+++++|+++|+++..... +.++++ |+.+++++|++++.++ +.+++++++......
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~---------~~~~~~~a~~~~~~~------ 88 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP---------EIQEMPTSLNNDSSN------ 88 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCC---------ccccchHhhhccccc------
Confidence 4567889999999998877655 556654 8899999999885331 112333332220000
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCC
Q psy11230 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNK 408 (553)
Q Consensus 331 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~ 408 (553)
.-........+..+.++..+..+++++|++.|++++. .+..|+||||+|+..|+.+++ .|+++|++++.++.
T Consensus 89 ------~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~ 162 (327)
T 1sw6_A 89 ------RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162 (327)
T ss_dssp ---------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT
T ss_pred ------ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 0000011112334566666666777777777777777 677777777777777777766 56677777777777
Q ss_pred CCChHHHHHHhcCC---HHHHHHHHhCC-CCccccccCCCCHHHHHHH----hCCHHHHHHHHhc---------------
Q psy11230 409 YAKTPLHIAVEQKN---MSALNYLLEHG-AQVDARTQLGKDPLYIAVE----MHNLSIVEQLLKF--------------- 465 (553)
Q Consensus 409 ~~~~~l~~a~~~~~---~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~----~~~~~~v~~L~~~--------------- 465 (553)
.|+||||+|+..|+ .++++.|++.+ .+++..+..|+||||+|+. .|+.+++++|++.
T Consensus 163 ~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242 (327)
T ss_dssp TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence 77777777777776 56666666654 5677777778888888887 7778888888766
Q ss_pred -----CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230 466 -----KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540 (553)
Q Consensus 466 -----g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 540 (553)
|++++.++..|.|||++|+. +++|+++ +++..+. .|.||||+|+..|+.++|++|+++|++++
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~----~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~ 310 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDS----NGDTCLNIAARLGNISIVDALLDYGADPF 310 (327)
T ss_dssp C----------------CHHHHHCS------HHHHHHH--TTTCCCT----TSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred hhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 88999999999999999985 8999988 5666666 89999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q psy11230 541 VKDKNGNTALHPS 553 (553)
Q Consensus 541 ~~~~~~~t~l~~a 553 (553)
.+|.+|+||||+|
T Consensus 311 ~~d~~G~TpL~~A 323 (327)
T 1sw6_A 311 IANKSGLRPVDFG 323 (327)
T ss_dssp CCCTTSCCGGGGT
T ss_pred ccCCCCCCHHHHH
Confidence 9999999999987
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-36 Score=279.20 Aligned_cols=269 Identities=18% Similarity=0.190 Sum_probs=202.4
Q ss_pred cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccCCHHHHHHHhCCHHHHHHHHHhcC
Q psy11230 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNN 298 (553)
Q Consensus 219 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~ 298 (553)
....+++++|++.|++++..+..|.++++ |+.+++++|+++|.+... +++..|+.....
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-----~~~~~a~~~~~~----------- 87 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-----QEMPTSLNNDSS----------- 87 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-----ccchHhhhcccc-----------
Confidence 34557789999999999999999999877 899999999999876432 344444332100
Q ss_pred CCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC
Q psy11230 299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV-KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ 377 (553)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~ 377 (553)
..............+.++..... +++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 88 --~~~~~~~~~~~~~~~~a~~~~~~--~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~ 163 (327)
T 1sw6_A 88 --NRNSEGGSSNQQQQHVSFDSLLQ--EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 163 (327)
T ss_dssp ------------------CHHHHHH--HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT
T ss_pred --cccccccCCccchhHHHHHhhHH--HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 00000111112233445544433 889999999999999 8999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCC---ch-HHHHHHcC-CCCCCCCCCCChHHHHHHh----cCCHHHHHHHHhC----------------
Q psy11230 378 GQMPLHIAVQNGY---VA-IPNLIRHG-ANVNARNKYAKTPLHIAVE----QKNMSALNYLLEH---------------- 432 (553)
Q Consensus 378 ~~~~l~~a~~~~~---~~-~~~ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~---------------- 432 (553)
|+||||+|+..|+ .+ +..+++.+ .+++.++..|+||||+|+. .|+.+++++|++.
T Consensus 164 g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~ 243 (327)
T 1sw6_A 164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243 (327)
T ss_dssp CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC
T ss_pred CCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhh
Confidence 9999999999988 33 44666665 6789999999999999999 8999999999986
Q ss_pred ----CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCccccccc
Q psy11230 433 ----GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508 (553)
Q Consensus 433 ----g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 508 (553)
|++++..+..|.||||+|+. +++|+++ +++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 244 ~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~- 314 (327)
T 1sw6_A 244 TNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK- 314 (327)
T ss_dssp ----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT-
T ss_pred hhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-
Confidence 89999999999999999985 9999998 5888999999999999999999999999999999999988
Q ss_pred ccCCCCcHHHHHHhhC
Q psy11230 509 GIWKGYTPLHLAVESN 524 (553)
Q Consensus 509 ~~~~~~t~l~~A~~~~ 524 (553)
.|.||||+|+++|
T Consensus 315 ---~G~TpL~~A~~~g 327 (327)
T 1sw6_A 315 ---SGLRPVDFGAGLE 327 (327)
T ss_dssp ---TSCCGGGGTCC--
T ss_pred ---CCCCHHHHHHhcC
Confidence 8999999998875
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2e-34 Score=252.71 Aligned_cols=197 Identities=21% Similarity=0.258 Sum_probs=167.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCC-----cccCCCCCcHHH
Q psy11230 11 EGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDV-----NAVDNLGNTVLH 83 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~-----~~~~~~~~t~l~ 83 (553)
.|.||||.|+..|+.++|++|++. |++++.. +..|.||||+|+..|+ +++++|++.|+++ +..+..|+||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 489999999999999999999997 9999988 9999999999999999 9999999999887 677789999999
Q ss_pred HHHhhcCCChHHHHHHhhCCCCccCCCC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy11230 84 TVASIKTRDPTAVEILKTNRANVNIKNK-------------EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNAL 150 (553)
Q Consensus 84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 150 (553)
+|+.. ++.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus 81 ~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g---- 154 (232)
T 2rfa_A 81 IAVIN--QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG---- 154 (232)
T ss_dssp HHHHT--TCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS----
T ss_pred HHHHc--CCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC----
Confidence 99998 999999999999999998865 79999999999999999999999998887665554
Q ss_pred HHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHH
Q psy11230 151 HVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230 (553)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~ 230 (553)
.|||++|+..|+.+++. +++++|++
T Consensus 155 ---------------------~t~L~~A~~~~~~~~~~----------------------------------~i~~~Ll~ 179 (232)
T 2rfa_A 155 ---------------------NTVLHILILQPNKTFAC----------------------------------QMYNLLLS 179 (232)
T ss_dssp ---------------------CCHHHHHHTCSCHHHHH----------------------------------HHHHHHHH
T ss_pred ---------------------CCHHHHHHHcCChHHHH----------------------------------HHHHHHHh
Confidence 55667777777777662 11245555
Q ss_pred cCCCC------cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy11230 231 KGANV------HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269 (553)
Q Consensus 231 ~~~~~------~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~ 269 (553)
.|.++ +.++..|.|||++|+..|+.+++++|+++|....
T Consensus 180 ~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 55544 4677888899999999999999999988876543
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.4e-34 Score=233.51 Aligned_cols=155 Identities=35% Similarity=0.457 Sum_probs=95.2
Q ss_pred HHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHH
Q psy11230 382 LHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460 (553)
Q Consensus 382 l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~ 460 (553)
|+.|+..|+.+++ .|++.|++++.++..|+|||++|+..++.+++++|+++|++++.++..|+||||+|+..|+.++++
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~ 87 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHH
Confidence 3334444443333 333344444444555556666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540 (553)
Q Consensus 461 ~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 540 (553)
+|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+. .|.|||++|+++|+.+++++|+++||+++
T Consensus 88 ~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~----~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS----DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 66666666666666666666666666666666666666666666655 66677777777777777777777766654
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2e-33 Score=240.42 Aligned_cols=190 Identities=26% Similarity=0.364 Sum_probs=178.5
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhc
Q psy11230 343 DENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQ 420 (553)
Q Consensus 343 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~ 420 (553)
..+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..++.+++ .|++.|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 457899999999999999999998866 8899999999999999999999988 67789999999999999999999999
Q ss_pred CCHHHHHHHH-hCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHhCC-----HHHHH
Q psy11230 421 KNMSALNYLL-EHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQN-----VAILE 493 (553)
Q Consensus 421 ~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g-~~~~~~~~~~~t~l~~A~~~~~-----~~~~~ 493 (553)
|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 577899999999999999999999999999999999 8999999999999999999998 99999
Q ss_pred HHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 494 ~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
+|+++|++++..+. .|.||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDN----SGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCC----CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999887 8999999999999999999999987
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-33 Score=231.22 Aligned_cols=159 Identities=36% Similarity=0.462 Sum_probs=148.1
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHH
Q psy11230 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSA 425 (553)
Q Consensus 347 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 425 (553)
+.|+.|+..|+.++|++|++.|++++.++..|+||+++|+..+..++. .+++.|++++.++..|+||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 468999999999999999999999999999999999999999999988 7889999999999999999999999999999
Q ss_pred HHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccc
Q psy11230 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505 (553)
Q Consensus 426 ~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 505 (553)
+++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|+|||++|+.+|+.+++++|+++|++++..
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~ 165 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH 165 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.5e-33 Score=238.97 Aligned_cols=196 Identities=21% Similarity=0.325 Sum_probs=170.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230 9 NKEGITLFQQAIVSSQTPIAKLLAERGA-NINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA 86 (553)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~ 86 (553)
+..+.|||+.|+..|+.++|+.|++.+. +++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3578999999999999999999999887 88877 8899999999999999 9999999999999999999999999999
Q ss_pred hhcCCChHHHHHHh-hCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHHHHhCCCCc
Q psy11230 87 SIKTRDPTAVEILK-TNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG-AHTECKNHQGYNALHVAVGILLRKGADI 164 (553)
Q Consensus 87 ~~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~t~l~~~~~~l~~~~~~~ 164 (553)
.. ++.+++++|+ ..+.+++.++..|.||||+|+..|+.+++++|++.| ++++.++..|.||
T Consensus 81 ~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~--------------- 143 (201)
T 3hra_A 81 AQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA--------------- 143 (201)
T ss_dssp HT--TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH---------------
T ss_pred Hc--CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH---------------
Confidence 98 9999999999 677899999999999999999999999999999998 7777666555554
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCc
Q psy11230 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKT 244 (553)
Q Consensus 165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 244 (553)
|++|+..++. ..++.+++++|+++|++++.++..|.|
T Consensus 144 ----------L~~A~~~~~~---------------------------------~~~~~~~v~~Ll~~ga~~~~~~~~g~t 180 (201)
T 3hra_A 144 ----------LIEAVGLREG---------------------------------NQLYQDIVKLLMENGADQSIKDNSGRT 180 (201)
T ss_dssp ----------HHHHHHSSCC---------------------------------SHHHHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ----------HHHHHHhccc---------------------------------hhhHHHHHHHHHHCCCCCCccCCCCCC
Confidence 4444443320 011267888888888888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCC
Q psy11230 245 ALDIAVEHGHLKIVEFLLDHG 265 (553)
Q Consensus 245 ~l~~A~~~~~~e~v~~Ll~~~ 265 (553)
||++|+..|+.+++++|+++|
T Consensus 181 ~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 181 AMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999875
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.6e-34 Score=259.69 Aligned_cols=210 Identities=25% Similarity=0.340 Sum_probs=160.2
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCcc----ccCCCCCcHHHHHHHc---CCchHH-HHHHcCCC---
Q psy11230 338 VNVKDDENKTPLHIAIESQCWDAVSLLVK----HGADVN----VIDNQGQMPLHIAVQN---GYVAIP-NLIRHGAN--- 402 (553)
Q Consensus 338 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~----~~~~~~----~~~~~~~~~l~~a~~~---~~~~~~-~ll~~~~~--- 402 (553)
.+..+..|.|+|+.|+..|+.++++.|++ .+.+++ ..+..|+||||+|+.. |+.+++ .|++.|++
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 34456667777777777777776666664 444443 2356677777777765 666666 45555433
Q ss_pred --------CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccccc--------------CCCCHHHHHHHhCCHHHHH
Q psy11230 403 --------VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ--------------LGKDPLYIAVEMHNLSIVE 460 (553)
Q Consensus 403 --------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~~~t~l~~A~~~~~~~~v~ 460 (553)
....+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 223566899999999999999999999999999999887 7999999999999999999
Q ss_pred HHHh---cCCCCCCCCCCCCcHHHHHHHhCC---------HHHHHHHHhccCCccc-------ccccccCCCCcHHHHHH
Q psy11230 461 QLLK---FKANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADINA-------KIISGIWKGYTPLHLAV 521 (553)
Q Consensus 461 ~L~~---~g~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~~-------~~~~~~~~~~t~l~~A~ 521 (553)
+|++ +|++++.++..|+||||+|+..++ .+++++|+++|++++. .+. .|.||||+|+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~----~g~TpL~~A~ 241 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR----KGLTPLALAA 241 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT----TSCCHHHHHH
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC----CCCCHHHHHH
Confidence 9999 999999999999999999999998 8999999999999974 444 8999999999
Q ss_pred hhCCHHHHHHHHhcCC-CCCCCCCCCCCCCC
Q psy11230 522 ESNNEAVINKLLDYNP-DLDVKDKNGNTALH 551 (553)
Q Consensus 522 ~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~ 551 (553)
..|+.++|++|+++|+ ++......+.+|-|
T Consensus 242 ~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 242 SSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HTTCHHHHHHHHHHHTC--------------
T ss_pred HhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9999999999999999 89988888877754
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=7.6e-34 Score=252.85 Aligned_cols=191 Identities=24% Similarity=0.308 Sum_probs=155.0
Q ss_pred CCCHHHHHHHcCCHH----HHHHHHhCCCCccc----cCCCCCcHHHHHHHc---CCchHH-HHHHcCCCCC--------
Q psy11230 345 NKTPLHIAIESQCWD----AVSLLVKHGADVNV----IDNQGQMPLHIAVQN---GYVAIP-NLIRHGANVN-------- 404 (553)
Q Consensus 345 ~~t~l~~a~~~~~~~----~v~~Ll~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~-~ll~~~~~~~-------- 404 (553)
|.||||.|+..|+.+ ++++|++.|++++. .+..|+||||+|+.. |+.+++ .|++.|++++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 455666666666654 44455555666555 555666666666665 555555 3444444443
Q ss_pred ---CCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccC-------------CCCHHHHHHHhCCHHHHHHHHh---c
Q psy11230 405 ---ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL-------------GKDPLYIAVEMHNLSIVEQLLK---F 465 (553)
Q Consensus 405 ---~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~~~~~~v~~L~~---~ 465 (553)
..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 23467999999999999999999999999999998886 9999999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHHHHHHH--hCCHH-------HHHHHHhccCCc-------ccccccccCCCCcHHHHHHhhCCHHHH
Q psy11230 466 KANVNSSDQFGRTVLHLAVK--IQNVA-------ILECLLVNKADI-------NAKIISGIWKGYTPLHLAVESNNEAVI 529 (553)
Q Consensus 466 g~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~t~l~~A~~~~~~~~v 529 (553)
|++++.++..|+||||+|+. .++.+ ++++|+++|+++ +..+. .|.||||+|+..|+.+++
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~----~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH----QGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT----TSCCHHHHHHHTTCHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC----CCCCHHHHHHHhCCHHHH
Confidence 99999999999999999999 78888 999999999999 67766 899999999999999999
Q ss_pred HHHHhcCCCC
Q psy11230 530 NKLLDYNPDL 539 (553)
Q Consensus 530 ~~Ll~~g~~~ 539 (553)
++|+++|+++
T Consensus 238 ~~Ll~~g~~~ 247 (256)
T 2etb_A 238 RHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhCCCCC
Confidence 9999998754
No 50
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-34 Score=252.82 Aligned_cols=215 Identities=23% Similarity=0.270 Sum_probs=182.1
Q ss_pred cCCCCCchHHHHHhccccChHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcH
Q psy11230 306 KGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA----NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381 (553)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 381 (553)
.+..|.||||+|+..+.. ++++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 4 ~d~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEK--ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp ---CCCCTTHHHHHTTCS--SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred CCCCCCchhHHHHHcCCh--hHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 456788888888887765 66666666544 688889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHH-HHHHcCCC------CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCcccccc-CCCCHHHHHHHh
Q psy11230 382 LHIAVQNGYVAIP-NLIRHGAN------VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ-LGKDPLYIAVEM 453 (553)
Q Consensus 382 l~~a~~~~~~~~~-~ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~ 453 (553)
||+|+..++.+++ .++..+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 9999999999988 56677655 466778899999999999999999999999999999997 999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhC
Q psy11230 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524 (553)
Q Consensus 454 ~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~ 524 (553)
|+.+++++|+++|++++.++..|.|||++|+.+++.+++++|+++|+++..... +..|.|+.+.+....
T Consensus 162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~--~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP--ESEDEESYDTESEFT 230 (236)
T ss_dssp TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCC--CCCTTTCCCCC----
T ss_pred CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCC--ccchHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999998773222 126778876655443
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=8.1e-34 Score=255.17 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=162.1
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCC---CCCCCCccHHHHHHhc---CH-HHHHHHHHcCC
Q psy11230 1 FDADVNATNKEGITLFQQAIVSSQTPIAKLLAE----RGANIND---PFPDDGKSCLHIAATK---NI-RLVRLLLEYNV 69 (553)
Q Consensus 1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~ 69 (553)
.+|..+.+|..|.||||.|+..|+.++|+.|++ .+.+++. ..+..|.||||+|+.. |+ ++|++|++.|+
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 367889999999999999999999999998887 5555542 2377899999999986 88 99999999986
Q ss_pred CC-------c----ccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCC--------------CCCcHHHHHHHcC
Q psy11230 70 DV-------N----AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK--------------EGDTPLHIAARTG 124 (553)
Q Consensus 70 ~~-------~----~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t~L~~A~~~g 124 (553)
+. + ..+..|+||||+|+.. ++.+++++|+++|++++.++. .|+||||+|+..|
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIER--RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence 53 2 2567899999999998 999999999999999999987 7999999999999
Q ss_pred CHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccc
Q psy11230 125 NYKMVRVLID---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQ 199 (553)
Q Consensus 125 ~~~iv~~Ll~---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~--~~~~~~Ll~~~~~~~~ 199 (553)
+.++|++|++ .|++++.++..|.| ||++|+..|+ .+..+.+
T Consensus 160 ~~~~v~~Ll~~~~~gad~~~~d~~g~t-------------------------pLh~A~~~~~~~~~~~~~~--------- 205 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPADISARDSVGNT-------------------------VLHALVEVADNTVDNTKFV--------- 205 (273)
T ss_dssp CHHHHHHHHHCSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSCHHHHHHH---------
T ss_pred CHHHHHHHHhcccCCCCceeeCCCCCc-------------------------HHHHHHHccCcchhHHHHH---------
Confidence 9999999999 88888766666555 5555565554 1111110
Q ss_pred hhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCc-------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy11230 200 CVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH-------AKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267 (553)
Q Consensus 200 ~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~-------~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~ 267 (553)
.+++++|++.|++++ .++..|.|||++|+..|+.+++++|+++|+.
T Consensus 206 ----------------------~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 206 ----------------------TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp ----------------------HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ----------------------HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 355666666666654 4788899999999999999999999998883
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.5e-33 Score=250.87 Aligned_cols=199 Identities=20% Similarity=0.274 Sum_probs=168.5
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCccHHHHHHhc---CH-HHHHHHHHcCCCCccc----
Q psy11230 11 EGITLFQQAIVSSQTP----IAKLLAERGANIND----PFPDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAV---- 74 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~---- 74 (553)
.|.||||.|+..|+.+ ++++|++.|++++. . +..|.||||+|+.. |+ ++|++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 3889999999999997 66788889999987 5 88999999999999 99 9999999998877643
Q ss_pred -------CCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCC-------------CCcHHHHHHHcCCHHHHHHHHh
Q psy11230 75 -------DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-------------GDTPLHIAARTGNYKMVRVLID 134 (553)
Q Consensus 75 -------~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~L~~A~~~g~~~iv~~Ll~ 134 (553)
+..|+||||+|+.. ++.+++++|+++|++++.++.. |+||||+|+..|+.++|++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEK--RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 37899999999998 9999999999999999999886 9999999999999999999999
Q ss_pred ---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCccchhccccccCC
Q psy11230 135 ---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYE--MKNFPAIELFLKYGVNVEQCVCHENVKHG 209 (553)
Q Consensus 135 ---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 209 (553)
.|++++.++..|+| |||+|+. .++.+..+.+
T Consensus 158 ~~~~ga~~n~~d~~g~T-------------------------pLh~A~~~~~~~~~~~~~~------------------- 193 (256)
T 2etb_A 158 NPHQPASLEATDSLGNT-------------------------VLHALVMIADNSPENSALV------------------- 193 (256)
T ss_dssp CSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSCHHHHHHH-------------------
T ss_pred ccccCCCcCccCCCCCC-------------------------HHHHHHHcccCCchhhHHH-------------------
Confidence 88888766666555 4555555 4555522211
Q ss_pred chhhHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy11230 210 GQLLLHLVRNGHQNAVKLILEKGANV-------HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268 (553)
Q Consensus 210 ~~~l~~a~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~ 268 (553)
.+++++|+++|+++ +.++..|.|||++|+..|+.+++++|+++|...
T Consensus 194 ------------~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 194 ------------IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp ------------HHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 24677777777777 788999999999999999999999999987643
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=3.8e-32 Score=242.55 Aligned_cols=194 Identities=24% Similarity=0.301 Sum_probs=158.4
Q ss_pred CCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccC----CCCCcHHHHHH---HcCCchHH-HHHHcC----------
Q psy11230 343 DENKTPLHIAIESQCWDA----VSLLVKHGADVNVID----NQGQMPLHIAV---QNGYVAIP-NLIRHG---------- 400 (553)
Q Consensus 343 ~~~~t~l~~a~~~~~~~~----v~~Ll~~~~~~~~~~----~~~~~~l~~a~---~~~~~~~~-~ll~~~---------- 400 (553)
..+.++|+.|+..|+.+. +++|++.|.+++..+ ..|+||||+|+ ..|+.+++ .|++.|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 345666777777777663 333344666666544 45677777766 45666666 344443
Q ss_pred -CCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc--------------cCCCCHHHHHHHhCCHHHHHHHHh-
Q psy11230 401 -ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART--------------QLGKDPLYIAVEMHNLSIVEQLLK- 464 (553)
Q Consensus 401 -~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~~~~~~v~~L~~- 464 (553)
..++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3345556689999999999999999999999999999988 689999999999999999999999
Q ss_pred --cCCCCCCCCCCCCcHHHHHHHhCC---------HHHHHHHHhccCCc-------ccccccccCCCCcHHHHHHhhCCH
Q psy11230 465 --FKANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADI-------NAKIISGIWKGYTPLHLAVESNNE 526 (553)
Q Consensus 465 --~g~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~~~~~~t~l~~A~~~~~~ 526 (553)
+|++++.++..|+||||+|+..++ .+++++|+++|+++ +..+. .|.||||+|+..|+.
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~----~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN----DGLSPLMMAAKTGKI 238 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT----TSCCHHHHHHHTTCH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC----CCCCHHHHHHHcCCH
Confidence 999999999999999999999887 79999999999998 44555 899999999999999
Q ss_pred HHHHHHHhcCCCCC
Q psy11230 527 AVINKLLDYNPDLD 540 (553)
Q Consensus 527 ~~v~~Ll~~g~~~~ 540 (553)
++|++|+++|+++.
T Consensus 239 ~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 239 GIFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999998643
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.7e-32 Score=244.91 Aligned_cols=203 Identities=19% Similarity=0.246 Sum_probs=163.9
Q ss_pred CCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCCCC---CCCCccHHHHHH---hcCH-HHHHHHHHcCCC-------
Q psy11230 9 NKEGITLFQQAIVSSQTPI----AKLLAERGANINDPF---PDDGKSCLHIAA---TKNI-RLVRLLLEYNVD------- 70 (553)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~----v~~Ll~~g~~~~~~~---~~~~~~~l~~A~---~~~~-~~v~~Ll~~~~~------- 70 (553)
+..|.|+||.||..|+.+. +++|++.|++++... +..|.||||+|+ +.|+ ++|++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4578999999999999995 555555999988652 267999999999 7788 999999998754
Q ss_pred ----CcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC--------------CCCCcHHHHHHHcCCHHHHHHH
Q psy11230 71 ----VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN--------------KEGDTPLHIAARTGNYKMVRVL 132 (553)
Q Consensus 71 ----~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~L~~A~~~g~~~iv~~L 132 (553)
.+..+..|+||||+|+.. ++.+++++|+++|++++.++ ..|+||||+|+..|+.++|++|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIER--RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHc--CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 445556899999999998 99999999999999999998 6899999999999999999999
Q ss_pred Hh---cCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccchhcccccc
Q psy11230 133 ID---HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQCVCHENVK 207 (553)
Q Consensus 133 l~---~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~~ 207 (553)
++ .|++++.++..|.| |||+|+..|+ .+..+.
T Consensus 160 l~~~~~ga~~~~~d~~g~T-------------------------pLh~A~~~~~~~~~~~~~------------------ 196 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNT-------------------------VLHALVAIADNTRENTKF------------------ 196 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCC-------------------------HHHHHHHHCCSSHHHHHH------------------
T ss_pred HhccccCCCCcccCCCCCc-------------------------HHHHHHHhccCchhHHHH------------------
Confidence 99 88888776666655 4555555443 221111
Q ss_pred CCchhhHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy11230 208 HGGQLLLHLVRNGHQNAVKLILEKGANV-------HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269 (553)
Q Consensus 208 ~~~~~l~~a~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~ 269 (553)
..+++++|+++|+++ +.++..|.|||++|+..|+.+++++|+++|....
T Consensus 197 -------------~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 197 -------------VTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 135667777777666 6688999999999999999999999999876543
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.8e-31 Score=224.00 Aligned_cols=162 Identities=25% Similarity=0.245 Sum_probs=152.1
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH 83 (553)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~ 83 (553)
+|.+|..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 5789999999999999999999999999999999887 8899999999999999 9999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCC
Q psy11230 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163 (553)
Q Consensus 84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~ 163 (553)
+|+.. ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus 107 ~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~------------------- 165 (192)
T 2rfm_A 107 WSIIF--GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL------------------- 165 (192)
T ss_dssp HHHHH--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-------------------
T ss_pred HHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-------------------
Confidence 99999 999999999999999999999999999999999999999999999888765554
Q ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYG 194 (553)
Q Consensus 164 ~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~ 194 (553)
.|.||+++|+..|+.+++++|++.+
T Consensus 166 ------~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 166 ------TGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp ------TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 4566788899999999999998764
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=4.3e-31 Score=219.42 Aligned_cols=143 Identities=27% Similarity=0.275 Sum_probs=126.1
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482 (553)
Q Consensus 403 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~ 482 (553)
++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 108 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCC
Q psy11230 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549 (553)
Q Consensus 483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 549 (553)
|+..++.+++++|+++|++++..+. .|.|||++|+..|+.+++++|+++|+++..++..|.||
T Consensus 109 A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 109 AVRGNHVKCVEALLARGADLTTEAD----SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999999999999998877 89999999999999999999999999999999998887
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.5e-30 Score=219.01 Aligned_cols=159 Identities=26% Similarity=0.283 Sum_probs=120.8
Q ss_pred cCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHH
Q psy11230 374 IDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452 (553)
Q Consensus 374 ~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 452 (553)
++..|+||||+|+..|+.+++ .+++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 110 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 334444444444444444444 3344445555566667788888888888888888888888888888888888888888
Q ss_pred hCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532 (553)
Q Consensus 453 ~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 532 (553)
.|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+..|+.+++++|
T Consensus 111 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL----TGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----TSCBHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCcHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888887776 788888888888888888888
Q ss_pred HhcC
Q psy11230 533 LDYN 536 (553)
Q Consensus 533 l~~g 536 (553)
+++|
T Consensus 187 l~~~ 190 (192)
T 2rfm_A 187 TEVR 190 (192)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8764
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=7.6e-31 Score=234.89 Aligned_cols=187 Identities=23% Similarity=0.336 Sum_probs=163.2
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHHcCCchHH-HHHHcCC-CCCCCCCCCChHHHHHH---
Q psy11230 346 KTPLHIAIESQCWDAVSLLVKHGAD--VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGA-NVNARNKYAKTPLHIAV--- 418 (553)
Q Consensus 346 ~t~l~~a~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~-~~~~~~~~~~~~l~~a~--- 418 (553)
.++++.|+..++.+.++.+++.+.+ ++..|..|+||||+|+..|+.+++ .|++.|. +++..+..|.|||++|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 4567778888888888887776555 677778888888888888888877 5667776 88888888888888888
Q ss_pred --hcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy11230 419 --EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496 (553)
Q Consensus 419 --~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 496 (553)
..++.+++++|++.|...+..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 668889999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred h-ccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 497 V-NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 497 ~-~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
+ .|++++..+. .|.||||+|+..|+.+++++|++++
T Consensus 237 ~~~gad~~~~d~----~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 237 AVPSCDISLTDR----DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TSTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred hcCCCCCcCcCC----CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9 8999998887 8999999999999999999999874
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=3.2e-30 Score=212.04 Aligned_cols=159 Identities=24% Similarity=0.325 Sum_probs=144.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhh
Q psy11230 10 KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASI 88 (553)
Q Consensus 10 ~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~ 88 (553)
....|||+.|+..|+.++|++|++.|++++.. +..|.||||+|+. |+ +++++|++.|++++..+..|+||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45679999999999999999999999999888 8999999999999 87 999999999999999999999999999999
Q ss_pred cCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230 89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN 168 (553)
Q Consensus 89 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~ 168 (553)
++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++. ++..+
T Consensus 81 --~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------~~~~~ 134 (162)
T 1ihb_A 81 --GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------VGHRN 134 (162)
T ss_dssp --TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------TTCCC
T ss_pred --CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------CCCcC
Confidence 9999999999999999999999999999999999999999999998873 22344
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy11230 169 NFGKTAFQMAYEMKNFPAIELFLKYGVN 196 (553)
Q Consensus 169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~ 196 (553)
..|.||+++|+..|+.+++++|+++|++
T Consensus 135 ~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 135 HKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 5567788899999999999999999874
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=7.1e-30 Score=211.03 Aligned_cols=159 Identities=33% Similarity=0.471 Sum_probs=145.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA 86 (553)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~ 86 (553)
....+.++|++|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 4556789999999999999999999999999988 8899999999999999 9999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccc
Q psy11230 87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166 (553)
Q Consensus 87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~ 166 (553)
.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus 89 ~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------- 144 (169)
T 2y1l_E 89 LF--GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK---------------------- 144 (169)
T ss_dssp HT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------
T ss_pred Hc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------
Confidence 99 999999999999999999999999999999999999999999999888765554
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230 167 ENNFGKTAFQMAYEMKNFPAIELFLKYG 194 (553)
Q Consensus 167 ~~~~~~~~l~~A~~~g~~~~~~~Ll~~~ 194 (553)
.|.||+++|+..|+.+++++|++.|
T Consensus 145 ---~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 145 ---FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp ---TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ---CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 4567788899999999999998765
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.1e-29 Score=209.89 Aligned_cols=152 Identities=37% Similarity=0.472 Sum_probs=114.4
Q ss_pred HHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHH
Q psy11230 381 PLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459 (553)
Q Consensus 381 ~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v 459 (553)
+++.|+..|+.+++ .++++|.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 96 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV 96 (169)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence 33333333333333 23333444444555667777778888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 460 ~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+..|+.+++++|+++|
T Consensus 97 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK----FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888887766 7888888888888888888888876
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=5.3e-30 Score=210.71 Aligned_cols=154 Identities=27% Similarity=0.324 Sum_probs=120.4
Q ss_pred cHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHH
Q psy11230 380 MPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSI 458 (553)
Q Consensus 380 ~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 458 (553)
+||+.|+..|+.+++ .++++|.+++..+..|+||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 85 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT 85 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 344444444444443 2334444555556667788888888 88888888888888888888888899999999899999
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC-cccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q psy11230 459 VEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD-INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537 (553)
Q Consensus 459 v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 537 (553)
+++|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++..+. .|.||||+|+..|+.+++++|+++||
T Consensus 86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH----KGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 9999988888888888888999999998999999999988887 466665 78899999999999999999999887
Q ss_pred C
Q psy11230 538 D 538 (553)
Q Consensus 538 ~ 538 (553)
+
T Consensus 162 d 162 (162)
T 1ihb_A 162 G 162 (162)
T ss_dssp -
T ss_pred C
Confidence 5
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=8.9e-30 Score=210.36 Aligned_cols=158 Identities=24% Similarity=0.266 Sum_probs=128.0
Q ss_pred CCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230 378 GQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456 (553)
Q Consensus 378 ~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 456 (553)
|.||||.|+..|+.+++ .+++.+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 45555555555555555 44455556666677778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+..|+.+++++|++++
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD----SGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888776 7888888888888888888888887
Q ss_pred CCC
Q psy11230 537 PDL 539 (553)
Q Consensus 537 ~~~ 539 (553)
+++
T Consensus 159 ~~~ 161 (167)
T 3v31_A 159 LKL 161 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.4e-29 Score=209.18 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=148.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230 11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 89 (553)
.|.||||.|+..|+.++|++|++.|.+++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK- 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-
Confidence 5899999999999999999999999999888 8899999999999999 999999999999999999999999999999
Q ss_pred CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230 90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169 (553)
Q Consensus 90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~ 169 (553)
++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus 80 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------------------------- 133 (167)
T 3v31_A 80 -GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD------------------------- 133 (167)
T ss_dssp -TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------------------
T ss_pred -CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-------------------------
Confidence 999999999999999999999999999999999999999999999888765554
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy11230 170 FGKTAFQMAYEMKNFPAIELFLKYGVNV 197 (553)
Q Consensus 170 ~~~~~l~~A~~~g~~~~~~~Ll~~~~~~ 197 (553)
.|.||+++|+..|+.+++++|++++...
T Consensus 134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 134 SGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4567788899999999999999886543
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.6e-29 Score=209.95 Aligned_cols=168 Identities=21% Similarity=0.252 Sum_probs=152.1
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCC
Q psy11230 345 NKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKN 422 (553)
Q Consensus 345 ~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 422 (553)
+.+||+.|+..|+.+++++|++.+.+ ++..+..|+||||+|+..++.+++ .+++.|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 46899999999999999999999877 788889999999999999999988 6778999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCc
Q psy11230 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502 (553)
Q Consensus 423 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 502 (553)
.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccCCCCcH
Q psy11230 503 NAKIISGIWKGYTP 516 (553)
Q Consensus 503 ~~~~~~~~~~~~t~ 516 (553)
...+. .|.||
T Consensus 162 ~~~~~----~~~~p 171 (172)
T 3v30_A 162 FQSNL----VPADP 171 (172)
T ss_dssp SCC-----------
T ss_pred hcccC----CCCCC
Confidence 87765 55555
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.9e-29 Score=210.74 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=133.3
Q ss_pred CcHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230 379 QMPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456 (553)
Q Consensus 379 ~~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 456 (553)
.++|+.|+..|+.+++ .+++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 3444444444444444 23333 345566677788888888888899999999999999988888899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.|||++|+..++.+++++|+++|
T Consensus 86 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK----YGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT----TSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc----CCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998888899999999999999999999999999888877 7889999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy11230 537 PDLDVKDKNG 546 (553)
Q Consensus 537 ~~~~~~~~~~ 546 (553)
++++..+.++
T Consensus 162 ~~~~~~~~~~ 171 (179)
T 3f6q_A 162 QNLNRIPYKD 171 (179)
T ss_dssp CCCSCBCCCC
T ss_pred cCcccCCccc
Confidence 9888776654
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=227.22 Aligned_cols=185 Identities=22% Similarity=0.304 Sum_probs=162.3
Q ss_pred hHHHHHhccccChHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCCCcHHHHHH---
Q psy11230 313 PLHLVVQRKSWNTTMFKTLLYHGAN--VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAV--- 386 (553)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~--- 386 (553)
+++.++..+.. +.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|. +++..+..|+|||+.|+
T Consensus 79 ~l~~a~~~~~~--~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 79 DAHPELVRRHL--VTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp TCCHHHHHHHH--HHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred CCCHHHHHHHH--HHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 33444443332 444444444333 67789999999999999999999999999998 99999999999999999
Q ss_pred --HcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHH
Q psy11230 387 --QNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463 (553)
Q Consensus 387 --~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~ 463 (553)
..+..+++ .++..|...+..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 44556666 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Q psy11230 464 K-FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499 (553)
Q Consensus 464 ~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g 499 (553)
+ .|++++.++..|.|||++|+..|+.+++++|++++
T Consensus 237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9 89999999999999999999999999999999875
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-32 Score=238.86 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=166.8
Q ss_pred CCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCC
Q psy11230 2 DADVN---ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNL 77 (553)
Q Consensus 2 ~~~~~---~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~ 77 (553)
|++++ ..+.+|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..|..
T Consensus 8 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~ 86 (229)
T 2vge_A 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86 (229)
T ss_dssp --CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 45544 45667778899999999999999999999999988 9999999999999999 9999999999999999999
Q ss_pred CCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH-
Q psy11230 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIA--ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153 (553)
Q Consensus 78 ~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~- 153 (553)
|+||||+|+.. ++.+++++|++.|++++.++ ..|+||||+| +..|+.+++++|++.|++++..+..+.||++.+
T Consensus 87 g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~ 164 (229)
T 2vge_A 87 GWTPLHCAASC--NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164 (229)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBC
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHh
Confidence 99999999998 99999999999999999987 6999999999 999999999999999999999999998888754
Q ss_pred ----HHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHH
Q psy11230 154 ----VGILLRKGAD--INVENNFGKTAFQMAYEMKNFPAIELF 190 (553)
Q Consensus 154 ----~~~l~~~~~~--~~~~~~~~~~~l~~A~~~g~~~~~~~L 190 (553)
.+++++.|.+ ++.++..|.|||++|+..|+.++++..
T Consensus 165 ~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred hccccccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 3456666777 667788899999999999998888753
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=6.8e-29 Score=201.49 Aligned_cols=150 Identities=29% Similarity=0.305 Sum_probs=139.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcC
Q psy11230 12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKT 90 (553)
Q Consensus 12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 90 (553)
+.|+|+.|+..|+.++|++|++.|++++ . +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-- 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-- 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--
Confidence 4689999999999999999999999876 3 7889999999999999 999999999999999999999999999999
Q ss_pred CChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCC
Q psy11230 91 RDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNF 170 (553)
Q Consensus 91 ~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~ 170 (553)
++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++. .
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-------------------------~ 132 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-------------------------F 132 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------------------T
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-------------------------C
Confidence 999999999999999999999999999999999999999999999988765554 4
Q ss_pred CCCHHHHHHHcCCHHHHHHH
Q psy11230 171 GKTAFQMAYEMKNFPAIELF 190 (553)
Q Consensus 171 ~~~~l~~A~~~g~~~~~~~L 190 (553)
|.||+++|+..|+.+++++|
T Consensus 133 g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 133 CKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp SCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHh
Confidence 56778889999999999886
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=9.4e-33 Score=254.95 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHH
Q psy11230 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL 396 (553)
Q Consensus 344 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~l 396 (553)
.+.++|++|+..|+.+++++|++.| ...+..+.+++..|-.+|..++..+
T Consensus 318 ~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 318 DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------------------
T ss_pred CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHH
Confidence 3457899999999999999998864 4556677888888888888777643
No 71
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=2e-29 Score=199.86 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=129.6
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCC-CC
Q psy11230 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNL-GN 79 (553)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~-~~ 79 (553)
++++|.+|..|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+. |+ +++++|++.|++++..+.. |+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 6899999999999999999999999999999999999988 8999999999999 98 9999999999999999999 99
Q ss_pred cHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230 80 TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138 (553)
Q Consensus 80 t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~ 138 (553)
||||+|+.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++
T Consensus 80 t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHH--TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999 999999999999999999999999999999999999999999999875
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.8e-31 Score=227.50 Aligned_cols=186 Identities=16% Similarity=0.095 Sum_probs=91.3
Q ss_pred HHHHhCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCC
Q psy11230 329 KTLLYHGANVNVKDD---ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405 (553)
Q Consensus 329 ~~l~~~~~~~~~~~~---~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~ 405 (553)
+.|++.+.+++..+. .+.|+|+.|+..|+.+++++|++.|++++..+..
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~---------------------------- 53 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE---------------------------- 53 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT----------------------------
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC----------------------------
Confidence 344555555443332 2334555566666666666666655555555444
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH-
Q psy11230 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLA- 483 (553)
Q Consensus 406 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~-~~~~t~l~~A- 483 (553)
|+||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|.|||++|
T Consensus 54 ----g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 129 (229)
T 2vge_A 54 ----GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129 (229)
T ss_dssp ----SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC
T ss_pred ----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555555555443 3555555555
Q ss_pred -HHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC--CCCCCCCCCCCCCCC
Q psy11230 484 -VKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD--LDVKDKNGNTALHPS 553 (553)
Q Consensus 484 -~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a 553 (553)
+..++.+++++|+++|++++..+. .|.||++.++..+. +++|++.|++ ++.+|.+|.||||+|
T Consensus 130 a~~~~~~~~v~~Ll~~ga~~~~~~~----~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A 195 (229)
T 2vge_A 130 PYREGYADCATYLADVEQSMGLMNS----GAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA 195 (229)
T ss_dssp TTSTTHHHHHHHHHHHHHHTTTSGG----GEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE
T ss_pred HHhcChHHHHHHHHHcCCCcccccC----CchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH
Confidence 555555555555555555555443 44455443333321 1344555554 444555555555543
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.8e-28 Score=198.94 Aligned_cols=122 Identities=30% Similarity=0.437 Sum_probs=106.3
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486 (553)
Q Consensus 407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~ 486 (553)
+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 110 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45577888888888888888888888888888888888899999888888899999888888888888888999999988
Q ss_pred CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHH
Q psy11230 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532 (553)
Q Consensus 487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 532 (553)
++.+++++|+++|++++..+. .|.|||++|+..|+.+++++|
T Consensus 111 ~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 111 NHQEVVELLIKYGADVHTQSK----FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHh
Confidence 888999999988888888776 788999999999998888887
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=4.6e-29 Score=205.62 Aligned_cols=160 Identities=28% Similarity=0.321 Sum_probs=140.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHH
Q psy11230 7 ATNKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHT 84 (553)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~ 84 (553)
..|+.|.|+|+.|+..|+.++|++|++. +.+++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 3578899999999999999999999994 4455554 7788999999999999 99999999999999999999999999
Q ss_pred HHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCc
Q psy11230 85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI 164 (553)
Q Consensus 85 a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~ 164 (553)
|+.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 82 A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t---------------- 143 (165)
T 3twr_A 82 ACSY--GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT---------------- 143 (165)
T ss_dssp HHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------------
T ss_pred HHHc--CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC----------------
Confidence 9998 9999999999999999999999999999999999999999999999988777666655
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy11230 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195 (553)
Q Consensus 165 ~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~~ 195 (553)
|+++|.. |+.+++++|++.|+
T Consensus 144 ---------~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 144 ---------PLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ---------TGGGSCT-TCHHHHHHHHTC--
T ss_pred ---------hhHhHhc-CChHHHHHHhhccc
Confidence 5556555 88899999988764
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=6.1e-29 Score=204.87 Aligned_cols=160 Identities=29% Similarity=0.331 Sum_probs=129.7
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQK 421 (553)
Q Consensus 342 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 421 (553)
+..+.++|+.|+..|+.+++++|++. .+.+++..+..|.||||+|+..|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-------------------------------~~~~~~~~~~~g~t~L~~A~~~~ 53 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-------------------------------QSVNCRDIEGRQSTPLHFAAGYN 53 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-------------------------------TTTTCCCTTTTCCCHHHHHHHTT
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-------------------------------CCCCccccccCCCCHHHHHHHcC
Confidence 34455666666666666666666553 22334455666788899999999
Q ss_pred CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC
Q psy11230 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501 (553)
Q Consensus 422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~ 501 (553)
+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus 54 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC
Q psy11230 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537 (553)
Q Consensus 502 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 537 (553)
++..+. .|.|||++|+. |+.+++++|+++|+
T Consensus 134 ~~~~~~----~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 PTKKNR----DGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCT----TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CcccCC----CCCChhHhHhc-CChHHHHHHhhccc
Confidence 988877 88999999777 88899999999886
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.5e-29 Score=221.77 Aligned_cols=171 Identities=20% Similarity=0.176 Sum_probs=126.9
Q ss_pred CCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCH
Q psy11230 378 GQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456 (553)
Q Consensus 378 ~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 456 (553)
|.|||+.|+..+..+++ .++.+|++++.. ..|.||||.|+..|+.+++++|++.|++++..+..|+||||+|+..|+.
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ 83 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 44555555555544444 444555555433 4567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCC-cHHHHH--HhhCCHHHHHHHH
Q psy11230 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY-TPLHLA--VESNNEAVINKLL 533 (553)
Q Consensus 457 ~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~-t~l~~A--~~~~~~~~v~~Ll 533 (553)
+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+. .|. ||||+| +..|+.+++++|+
T Consensus 84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY----SDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS----SSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC----CCCcchHHHHHHhhhccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876 555 999999 8889999999999
Q ss_pred hcCCCCCCC---------CCCCCCCCCCC
Q psy11230 534 DYNPDLDVK---------DKNGNTALHPS 553 (553)
Q Consensus 534 ~~g~~~~~~---------~~~~~t~l~~a 553 (553)
++|++++.. +..+.+|+++|
T Consensus 160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa 188 (239)
T 1ycs_B 160 GVQEKMGIMNKGVIYALWDYEPQNDDELP 188 (239)
T ss_dssp HHHHHTTTTGGGEEEESSCBCCSSTTBCC
T ss_pred HhhhcccccccceEEEEeccCCCCCCccc
Confidence 999988877 45577777664
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.5e-28 Score=203.12 Aligned_cols=164 Identities=25% Similarity=0.261 Sum_probs=153.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230 344 ENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQK 421 (553)
Q Consensus 344 ~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~ 421 (553)
.+.++|+.|+..|+.+++++|++. +.+++..+..|+||||+|+..++.+++ .|++.|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 467899999999999999999998 677888999999999999999999988 677899999999999999999999999
Q ss_pred CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC
Q psy11230 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501 (553)
Q Consensus 422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~ 501 (553)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy11230 502 INAKII 507 (553)
Q Consensus 502 ~~~~~~ 507 (553)
++....
T Consensus 164 ~~~~~~ 169 (179)
T 3f6q_A 164 LNRIPY 169 (179)
T ss_dssp CSCBCC
T ss_pred cccCCc
Confidence 998654
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=6.5e-28 Score=196.73 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=139.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230 12 GITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89 (553)
Q Consensus 12 g~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 89 (553)
|.|+|+.|+..|+.++|++|++. +.+++.. +..|.||||+ +..|+ +++++|++.|++++..+..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART- 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-
Confidence 67999999999999999999998 3477777 8899999999 88888 999999999999999999999999999998
Q ss_pred CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCC
Q psy11230 90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169 (553)
Q Consensus 90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~ 169 (553)
++.+++++|++.|++++.++..|+||||+|+..|+.+++++|++. ++++.+ +.
T Consensus 79 -~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-------------------------~~ 131 (156)
T 1bd8_A 79 -GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-------------------------DA 131 (156)
T ss_dssp -TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-------------------------CT
T ss_pred -CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-------------------------CC
Confidence 999999999999999999999999999999999999999999988 666544 45
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230 170 FGKTAFQMAYEMKNFPAIELFLKY 193 (553)
Q Consensus 170 ~~~~~l~~A~~~g~~~~~~~Ll~~ 193 (553)
.|.||+++|+..|+.+++++|+++
T Consensus 132 ~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 132 RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 567788899999999999999864
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=8.6e-28 Score=196.00 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=115.7
Q ss_pred cHHHHHHHcCCchHH-HHHHc-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHH
Q psy11230 380 MPLHIAVQNGYVAIP-NLIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457 (553)
Q Consensus 380 ~~l~~a~~~~~~~~~-~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 457 (553)
++|+.|+..|+.+++ .+++. +.+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 344444444444433 22222 22455666677788888 7788888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230 458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535 (553)
Q Consensus 458 ~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 535 (553)
++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++..+. .|.|||++|+..|+.+++++|+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~----~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA----RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT----TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888 88887766 788888888888888888888874
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=1.5e-28 Score=199.97 Aligned_cols=144 Identities=22% Similarity=0.193 Sum_probs=120.5
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc-HHHH
Q psy11230 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT-VLHL 482 (553)
Q Consensus 404 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t-~l~~ 482 (553)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 345667899999999999999999999999999999999999999995 99999999999999999999999999 9999
Q ss_pred HHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy11230 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552 (553)
Q Consensus 483 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 552 (553)
|+..++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDA----WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 9999999999999999999999887 89999999999999999999999999999999999998763
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3.2e-28 Score=192.92 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=128.7
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC-CCc
Q psy11230 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF-GRT 478 (553)
Q Consensus 400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~-~~t 478 (553)
+.+++..+..|.||||.|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 46788889999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538 (553)
Q Consensus 479 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 538 (553)
|||+|+..++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDA----WGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSS----SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999887 899999999999999999999999986
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=1.1e-28 Score=200.69 Aligned_cols=145 Identities=21% Similarity=0.260 Sum_probs=119.9
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc-H
Q psy11230 4 DVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT-V 81 (553)
Q Consensus 4 ~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t-~ 81 (553)
.++..+..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+ .|+ +++++|++.|++++..+..|+| |
T Consensus 4 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 45678999999999999999999999999999999988 889999999996 677 9999999999999999999999 9
Q ss_pred HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy11230 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152 (553)
Q Consensus 82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~ 152 (553)
||+|+.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||.+-
T Consensus 82 L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 82 VHDAARE--GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHHHH--TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHHHHC--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999888653
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.4e-30 Score=226.76 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=148.3
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcC
Q psy11230 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQK 421 (553)
Q Consensus 343 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~ 421 (553)
..|.|||+.|+..++.+.++.|+++|++++.. ..+.|||+.|+..|+.+++ .|++.|.+++.++..|+||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 45889999999999999999999999999864 7788999999999999988 677889999999999999999999999
Q ss_pred CHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHhCCHHHHHHHHhc
Q psy11230 422 NMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR-TVLHLA--VKIQNVAILECLLVN 498 (553)
Q Consensus 422 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~-t~l~~A--~~~~~~~~~~~Ll~~ 498 (553)
+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+..+. ||+++| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988777 999999 788999999999999
Q ss_pred cCCccccccc-----ccCCCCcHHHHHHhhCCHHHHHHHHhcCCCC------CCCCCCCCCCCCC
Q psy11230 499 KADINAKIIS-----GIWKGYTPLHLAVESNNEAVINKLLDYNPDL------DVKDKNGNTALHP 552 (553)
Q Consensus 499 g~~~~~~~~~-----~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~~t~l~~ 552 (553)
|++++..+.. .++.+.+++++|.+.|. +++.|.+.+.+. ...+..|.+|.++
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y 224 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence 9988875331 13478899998888887 556666655541 3445556666543
No 84
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.3e-31 Score=244.65 Aligned_cols=262 Identities=12% Similarity=0.058 Sum_probs=142.3
Q ss_pred hhHHHHH-cCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC----cccccCCHHHHHHHhCC
Q psy11230 212 LLLHLVR-NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD----SLQFIHSPLHLAIEKQH 286 (553)
Q Consensus 212 ~l~~a~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e~v~~Ll~~~~~~~----~~~~~~~~l~~a~~~~~ 286 (553)
.++.+.. .++.++++++++.|.+. .||||+|+..|+.+++++|++.|.... ....+.+||++|+..|+
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~ 140 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence 4445543 57788888888877654 488888888888888888888876221 11124567777777777
Q ss_pred HHHHHHHHHhcCCCCCccccCCCCCchHHHHHhccccChHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11230 287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVK 366 (553)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~ 366 (553)
.+++++|++.+++....+ ++ +.+ .||||+|+..|+.+++++|++
T Consensus 141 ~eiv~~Ll~~gad~~~~~---------------------------------i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~ 184 (376)
T 2aja_A 141 LHVLNRLCELAPTEIMAM---------------------------------IQ--AEN-YHAFRLAAENGHLHVLNRLCE 184 (376)
T ss_dssp HHHHHHHHHSCTTTHHHH---------------------------------HS--HHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccc---------------------------------cC--CCC-CCHHHHHHHCCCHHHHHHHHH
Confidence 777777777642110000 01 111 567777777777777777777
Q ss_pred CCCCccc--cCCCCCcHHHHHH-HcCCchHHHHH-HcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccC
Q psy11230 367 HGADVNV--IDNQGQMPLHIAV-QNGYVAIPNLI-RHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442 (553)
Q Consensus 367 ~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~ 442 (553)
+|++++. .+..|.||||+|+ ..|+.++++++ +.|. .|.|||+.|+.+|+.+++++|+++|++++..+.
T Consensus 185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~- 256 (376)
T 2aja_A 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD- 256 (376)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT-
T ss_pred cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH-
Confidence 7777665 5666677777777 77777776444 3221 256777777777777777777777666544332
Q ss_pred CCCHHHHHHHhCC---------------------------HHHHHHHHhcCC-----CCCCCCCCCCcHHHHHHHhCCHH
Q psy11230 443 GKDPLYIAVEMHN---------------------------LSIVEQLLKFKA-----NVNSSDQFGRTVLHLAVKIQNVA 490 (553)
Q Consensus 443 ~~t~l~~A~~~~~---------------------------~~~v~~L~~~g~-----~~~~~~~~~~t~l~~A~~~~~~~ 490 (553)
+++.|+.+|+ .+.+++|++.+. +.......+.+||++|+..|+.+
T Consensus 257 ---~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e 333 (376)
T 2aja_A 257 ---AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333 (376)
T ss_dssp ---TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTT
T ss_pred ---HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHH
Confidence 3333333333 344555554211 01111223456677777777777
Q ss_pred HHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh
Q psy11230 491 ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534 (553)
Q Consensus 491 ~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 534 (553)
++++|+++|. ..+ |.++|++.+|..+|..++++.-++
T Consensus 334 ~v~lLl~~~~---v~~----~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 334 ACALLLSIPS---VLA----LTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp HHHHHTTSHH---HHH----SCC---------------------
T ss_pred HHHHHHcChH---HHH----HHHHhccccccccccccHHHHHHH
Confidence 7777766541 111 256667777777776666655443
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=1.9e-26 Score=182.67 Aligned_cols=127 Identities=28% Similarity=0.366 Sum_probs=120.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy11230 7 ATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTV 85 (553)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a 85 (553)
..+..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+||||+|
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45677899999999999999999999999999988 8999999999999999 999999999999999999999999999
Q ss_pred HhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy11230 86 ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136 (553)
Q Consensus 86 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~ 136 (553)
+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 88 ~~~--~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFI--GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHc--CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999 9999999999999999999999999999999999999999999875
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=5.1e-26 Score=178.33 Aligned_cols=126 Identities=38% Similarity=0.571 Sum_probs=121.5
Q ss_pred CCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488 (553)
Q Consensus 409 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~ 488 (553)
+|+|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538 (553)
Q Consensus 489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 538 (553)
.+++++|+++|++++..+. .|.|||++|+..|+.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999998877 899999999999999999999999986
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=5.2e-26 Score=178.28 Aligned_cols=125 Identities=40% Similarity=0.583 Sum_probs=121.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230 11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 89 (553)
+|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~- 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN- 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-
Confidence 5899999999999999999999999999887 8899999999999999 999999999999999999999999999998
Q ss_pred CCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230 90 TRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138 (553)
Q Consensus 90 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~ 138 (553)
++.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|++
T Consensus 79 -~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 -GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999985
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=5.9e-26 Score=179.82 Aligned_cols=126 Identities=35% Similarity=0.443 Sum_probs=119.7
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486 (553)
Q Consensus 407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~ 486 (553)
...+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcC
Q psy11230 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536 (553)
Q Consensus 487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 536 (553)
++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~----~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDK----FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCC----CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999998877 8999999999999999999999987
No 89
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=4.4e-27 Score=195.55 Aligned_cols=158 Identities=14% Similarity=0.187 Sum_probs=123.6
Q ss_pred cHHHHHHHcCCchHH-HHHHcCCCCCCCC-CCCChHHHHHHhcCCH----HHHHHHHhCCCCccccccCCCCHHHHHHHh
Q psy11230 380 MPLHIAVQNGYVAIP-NLIRHGANVNARN-KYAKTPLHIAVEQKNM----SALNYLLEHGAQVDARTQLGKDPLYIAVEM 453 (553)
Q Consensus 380 ~~l~~a~~~~~~~~~-~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 453 (553)
++++.|+..|..+.+ .++..+ ++..+ ..|+||||+|+.+++. +++++|+++|++++.++..|+||||+|+..
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 445555555555444 233322 23333 4577888888888764 589999999999999999999999999988
Q ss_pred CC------HHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHh-----CCHHHHHHHHh-ccCCcccccccccCCCCcHHHHH
Q psy11230 454 HN------LSIVEQLLKFKANVNSSDQFGR-TVLHLAVKI-----QNVAILECLLV-NKADINAKIISGIWKGYTPLHLA 520 (553)
Q Consensus 454 ~~------~~~v~~L~~~g~~~~~~~~~~~-t~l~~A~~~-----~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~t~l~~A 520 (553)
|+ .+++++|+++|++++.+|..|. ||||+|+.. +..+++++|++ +|++++..+. .|.||||+|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~----~G~TpL~~A 161 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK----WGLTALEFV 161 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT----TSCCHHHHH
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC----CCCCHHHHH
Confidence 86 6789999999999999999999 999999984 34678999999 8999999888 899999999
Q ss_pred HhhCCHHHHHHHHhcCCCCCCCC
Q psy11230 521 VESNNEAVINKLLDYNPDLDVKD 543 (553)
Q Consensus 521 ~~~~~~~~v~~Ll~~g~~~~~~~ 543 (553)
++.|+.++|++|+++....++++
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCHHHHHHHHHHHHHHhccc
Confidence 99999999999998766655554
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=9.7e-27 Score=184.83 Aligned_cols=133 Identities=23% Similarity=0.255 Sum_probs=120.9
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCc
Q psy11230 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNT 80 (553)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t 80 (553)
|||+ .+|..|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..+..|+|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence 7888 89999999999999999999999999999999988 8999999999999999 9999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230 81 VLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138 (553)
Q Consensus 81 ~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~ 138 (553)
|||+|+.. ++.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+.+..
T Consensus 79 ~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 79 PLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 99999998 999999999999999999999999999999999999999988876543
No 91
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=3.5e-26 Score=190.13 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=133.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-----HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230 12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-----RLVRLLLEYNVDVNAVDNLGNTVLHTVA 86 (553)
Q Consensus 12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-----~~v~~Ll~~~~~~~~~~~~~~t~l~~a~ 86 (553)
+.++|+.|+..|+.+.++.+++.+.+ ...+..|.||||+|+.+|+ +++++|++.|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 56899999999999999999998764 3312679999999999884 5999999999999999999999999999
Q ss_pred hhcCCC------hHHHHHHhhCCCCccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCcHHHHH
Q psy11230 87 SIKTRD------PTAVEILKTNRANVNIKNKEGD-TPLHIAARTG-----NYKMVRVLID-HGAHTECKNHQGYNALHVA 153 (553)
Q Consensus 87 ~~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~L~~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~~ 153 (553)
.. ++ .+++++|+++|++++.+|..|+ ||||+|+..+ +.+++++|++ +|++++.++.
T Consensus 84 ~~--~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--------- 152 (186)
T 3t8k_A 84 QG--GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--------- 152 (186)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT---------
T ss_pred Hc--CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC---------
Confidence 98 54 5889999999999999999999 9999999954 4579999998 8888765554
Q ss_pred HHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230 154 VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194 (553)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~ 194 (553)
.|.|||++|+..|+.+++++|.++.
T Consensus 153 ----------------~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 153 ----------------WGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp ----------------TSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 4566778889999999999998764
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=8.9e-26 Score=179.25 Aligned_cols=134 Identities=28% Similarity=0.352 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11230 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTV 479 (553)
Q Consensus 400 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~ 479 (553)
|+++ .++..|+||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4556 677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230 480 LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538 (553)
Q Consensus 480 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 538 (553)
||+|+..++.+++++|+++|++++..+. .|.|||++|+..+..+++++|.+.+..
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNI----FGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHhhccHHHHHhhccccccC
Confidence 9999999999999999999999988877 899999999999999998888877654
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=3.1e-26 Score=200.86 Aligned_cols=170 Identities=25% Similarity=0.276 Sum_probs=135.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhc
Q psy11230 11 EGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIK 89 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 89 (553)
.+.+++..++..|+.+.++.+...+.++ +..|.||||+|+..|+ +++++|++ |++++..+..|+||||+|+..
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~- 87 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL- 87 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-
T ss_pred CCccHHHHHHHcCCCccccccccccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-
Confidence 4555555556666665555544444333 3467888999998888 88888888 888888888899999999888
Q ss_pred CCChHHHHHHhhCCCCccCCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccC
Q psy11230 90 TRDPTAVEILKTNRANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN 168 (553)
Q Consensus 90 ~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~ 168 (553)
++.+++++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++.++..|.||||+|++... .
T Consensus 88 -g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~---------~ 157 (244)
T 3ui2_A 88 -GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK---------T 157 (244)
T ss_dssp -TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT---------T
T ss_pred -CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh---------c
Confidence 88899999999999888888 778899999999999999999999999998888889999988876432 2
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy11230 169 NFGKTAFQMAYEMKNFPAIELFLKYGVN 196 (553)
Q Consensus 169 ~~~~~~l~~A~~~g~~~~~~~Ll~~~~~ 196 (553)
..+.+|+++|+..|+.+++++|++.+.+
T Consensus 158 ~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 4578999999999999999999986443
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=4.8e-25 Score=191.10 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=118.7
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHc-CCCCcccCCCCCcHH
Q psy11230 5 VNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEY-NVDVNAVDNLGNTVL 82 (553)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~-~~~~~~~~~~~~t~l 82 (553)
++.++..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ ++|++|++. |++++..+..|+|||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence 3556788999999999999999999999999999988 8899999999999999 999999999 999999999999999
Q ss_pred HHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy11230 83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146 (553)
Q Consensus 83 ~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 146 (553)
|+|+.. ++.+++++|+++|++++.++..|.|||++|+..|+.++++.|++.|+.....+..+
T Consensus 145 ~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 145 HAAAWK--GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHH--TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHHc--CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999 99999999999999999999999999999999999999999999999877665544
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=2.5e-24 Score=167.14 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=94.6
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy11230 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVA 86 (553)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~ 86 (553)
.++.|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+ +++++|++.|++++..|..|+||||+|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 3567888888888888888888888888888877 7788888888888888 8888888888888888888888888888
Q ss_pred hhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy11230 87 SIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126 (553)
Q Consensus 87 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~ 126 (553)
.. ++.+++++|+++|++++.++..|+|||++|+..+..
T Consensus 82 ~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 82 YE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred Hc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 88 888888888888888888888888888888443333
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=190.94 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=118.5
Q ss_pred CChHHHHHHhcCCHHHHHHHHhCCCCccc------cccCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy11230 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVL 480 (553)
Q Consensus 410 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l 480 (553)
..++|+.|+..|+.+.+++|++.|++++. .+..|+||||+|+.. |+.+++++|+++|++++.++..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34679999999999999999999999887 578889999999987 889999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy11230 481 HLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553 (553)
Q Consensus 481 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 553 (553)
|+|+..|+.+++++|+++|++++..+. .|.|||++|+..|+.+++++|+++|++ .|.||||+|
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~----~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A 293 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNE----AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVD 293 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCT----TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence 999999999999999999999998877 899999999999999999999999887 578999987
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=1.5e-23 Score=175.38 Aligned_cols=138 Identities=28% Similarity=0.329 Sum_probs=112.6
Q ss_pred CCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCC-CCCCcHHHHHH
Q psy11230 44 DDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIAA 121 (553)
Q Consensus 44 ~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~~A~ 121 (553)
..|.||||+|+..|+ +++++|++ |++++..+..|+||||+|+.. ++.+++++|+++|++++.++ ..|+||||+|+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 356788888888888 88888888 888888888888888888887 88888888888888888777 77888888888
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy11230 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY 193 (553)
Q Consensus 122 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~ 193 (553)
..|+.+++++|+++|++++.++..|.|||++|++.... ..+.+++++|+..|+.+++++|.++
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT---------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT---------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC---------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 88888888888888888888888888888888764433 3457899999999999999988764
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2.4e-24 Score=186.66 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=115.9
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHH
Q psy11230 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF-KANVNSSDQFGRTVLHLAVK 485 (553)
Q Consensus 407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~-g~~~~~~~~~~~t~l~~A~~ 485 (553)
+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++ |++++.++..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCC
Q psy11230 486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547 (553)
Q Consensus 486 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 547 (553)
.|+.+++++|+++|++++..+. .|.|||++|+..|+.++++.|++.|+....+|.++.
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNI----EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCT----TSCCHHHHCCSHHHHHHHC-----------------
T ss_pred cCCHHHHHHHHHcCCCCccccC----CCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 9999999999999999999887 899999999999999999999999999888887654
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1.2e-23 Score=163.27 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=95.2
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy11230 408 KYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487 (553)
Q Consensus 408 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~ 487 (553)
..|.|||+.|+..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHH
Q psy11230 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527 (553)
Q Consensus 488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~ 527 (553)
+.+++++|+++|++++..+. .|.|||++|...+..+
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~----~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGP----DGLTAFEATDNQAIKA 120 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCT----TSCCHHHHCCCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCC----CCCCHHHHhCCHHHHH
Confidence 88888888888888888776 7888888885443333
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=1.1e-24 Score=182.29 Aligned_cols=140 Identities=23% Similarity=0.262 Sum_probs=123.6
Q ss_pred CCCCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHh
Q psy11230 375 DNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEM 453 (553)
Q Consensus 375 ~~~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~ 453 (553)
+..|.||||.|+..|+.+++..+..+.+++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 346778888888888888875444488888889999999999999999999999999999999888 8899999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHH
Q psy11230 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533 (553)
Q Consensus 454 ~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll 533 (553)
|+.+++++|+++|++++.++..|.|||++|++.++. . .+.++|++|+..|..+++++|.
T Consensus 121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~----~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------T----PKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------C----CCCSHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------c----ccccHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999999974432 1 5669999999999999999998
Q ss_pred hc
Q psy11230 534 DY 535 (553)
Q Consensus 534 ~~ 535 (553)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 76
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=189.21 Aligned_cols=126 Identities=23% Similarity=0.261 Sum_probs=118.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCCCcH
Q psy11230 11 EGITLFQQAIVSSQTPIAKLLAERGANINDP-----FPDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLGNTV 81 (553)
Q Consensus 11 ~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~~t~ 81 (553)
.+.++|+.|+..|+.+.|+.|++.|++++.. .+..|.||||+|+.. |+ +++++|++.|++++..|..|+||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3557899999999999999999999999873 378899999999987 77 99999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy11230 82 LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138 (553)
Q Consensus 82 l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~ 138 (553)
||+|+.. ++.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 230 Lh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 230 LHYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHHT--TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 9999998 999999999999999999999999999999999999999999998775
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=5e-22 Score=176.92 Aligned_cols=190 Identities=19% Similarity=0.158 Sum_probs=145.1
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHHcCCchHHHHHHcCCCCC--CCCCCCChHHHHH
Q psy11230 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPNLIRHGANVN--ARNKYAKTPLHIA 417 (553)
Q Consensus 341 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~ll~~~~~~~--~~~~~~~~~l~~a 417 (553)
.|..+.+.++.+...|+..+.+++-..-......... +..... .......+++....... .......++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 5677888999999999887777664432221110011 111111 00111112222222111 1111234789999
Q ss_pred HhcCCHHHHHHHHhCCCCcc------ccccCCCCHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230 418 VEQKNMSALNYLLEHGAQVD------ARTQLGKDPLYIAVEM---HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488 (553)
Q Consensus 418 ~~~~~~~~~~~Ll~~g~~~~------~~~~~~~t~l~~A~~~---~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~ 488 (553)
+..++.+.++.+++.|.+++ ..+..|+||||+|+.. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999999999854 4478899999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCC
Q psy11230 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538 (553)
Q Consensus 489 ~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 538 (553)
.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus 218 ~~~v~~Ll~~gad~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANE----SGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCccC----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999988 899999999999999999999999985
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=6.5e-23 Score=179.72 Aligned_cols=141 Identities=23% Similarity=0.257 Sum_probs=117.2
Q ss_pred CCCcHHHHHHHcCCchHHHHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccc-cCCCCHHHHHHHhCC
Q psy11230 377 QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLGKDPLYIAVEMHN 455 (553)
Q Consensus 377 ~~~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~ 455 (553)
.|.||||.|+..|+.+++.++..+.+++.++..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 4667777777777777664433377777788888899999999999999999999999998888 779999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhc
Q psy11230 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535 (553)
Q Consensus 456 ~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 535 (553)
.+++++|+++|++++.++..|.||||+|+..++. . .+.|||++|+..|+.+++++|+++
T Consensus 124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----------------~----~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 124 PEVVEALVELGADIEVEDERGLTALELAREILKT-----------------T----PKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-----------------C----CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-----------------c----CCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999999999999999999863321 1 577999999999999999999987
Q ss_pred CCC
Q psy11230 536 NPD 538 (553)
Q Consensus 536 g~~ 538 (553)
+.+
T Consensus 183 ~~~ 185 (244)
T 3ui2_A 183 VFE 185 (244)
T ss_dssp HEE
T ss_pred ccc
Confidence 543
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.6e-22 Score=185.84 Aligned_cols=143 Identities=21% Similarity=0.212 Sum_probs=119.4
Q ss_pred cCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC--CCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHH
Q psy11230 8 TNKEGITLFQQAIVS-SQTPIAKLLAERGANINDPFP--DDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLH 83 (553)
Q Consensus 8 ~~~~g~~~l~~A~~~-g~~~~v~~Ll~~g~~~~~~~~--~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~ 83 (553)
.+-.+.|+||.|+.. |+.++|++|++.|++++.. + ..|.||||+|+..|+ ++|++|+++|++++..|..|+||||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 344567899999999 9999999999999999987 5 789999999999999 9999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHH
Q psy11230 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH---TECKNHQGYNALHVA 153 (553)
Q Consensus 84 ~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~~t~l~~~ 153 (553)
+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+.. ....+..+.|+++..
T Consensus 274 ~A~~~--g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 274 HATIL--GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred HHHHc--CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 99999 999999999999999999999999999999999999999999987643 333445556665554
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=3.3e-22 Score=183.80 Aligned_cols=139 Identities=27% Similarity=0.300 Sum_probs=92.2
Q ss_pred CChHHHHHHhc-CCHHHHHHHHhCCCCccccc--cCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230 410 AKTPLHIAVEQ-KNMSALNYLLEHGAQVDART--QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486 (553)
Q Consensus 410 ~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~ 486 (553)
+.|+||.|+.. ++.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 44677777777 77777777777777777766 6677777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCC---CCCCCCCCCCCCCCC
Q psy11230 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP---DLDVKDKNGNTALHP 552 (553)
Q Consensus 487 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~~t~l~~ 552 (553)
++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+. +....+..+.|++++
T Consensus 279 g~~~~v~~LL~~Gad~~~~d~----~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i 343 (368)
T 3jue_A 279 GHTGLACLFLKRGADLGARDS----EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343 (368)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred CcHHHHHHHHHCcCCCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence 777777777777777777666 67777777777777777777776653 344455556666654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=3.2e-22 Score=194.40 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=106.2
Q ss_pred ChHHHHHHhcCCHHHHHHHHhCCCCcccc------ccCCCCHHHHHHH---hCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy11230 411 KTPLHIAVEQKNMSALNYLLEHGAQVDAR------TQLGKDPLYIAVE---MHNLSIVEQLLKFKANVNSSDQFGRTVLH 481 (553)
Q Consensus 411 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~------~~~~~t~l~~A~~---~~~~~~v~~L~~~g~~~~~~~~~~~t~l~ 481 (553)
.+.|+.|+..|+.++++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|+||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36788888888888888888888888776 7788888888866 88888888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCCCC
Q psy11230 482 LAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKD 543 (553)
Q Consensus 482 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 543 (553)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++...
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~----~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNE----AGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCT----TCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 88888888888888888888888877 78888888888888888888888888877743
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=7.7e-22 Score=144.29 Aligned_cols=92 Identities=39% Similarity=0.550 Sum_probs=58.0
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHHHHHHh
Q psy11230 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVE 522 (553)
Q Consensus 443 ~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~ 522 (553)
|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~----~g~t~l~~A~~ 77 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAAR 77 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666665555 56666666666
Q ss_pred hCCHHHHHHHHhcCCC
Q psy11230 523 SNNEAVINKLLDYNPD 538 (553)
Q Consensus 523 ~~~~~~v~~Ll~~g~~ 538 (553)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 6666666666666653
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=4e-22 Score=177.52 Aligned_cols=130 Identities=18% Similarity=0.289 Sum_probs=120.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----CCCCccHHHHHHhc---CH-HHHHHHHHcCCCCcccCCCC
Q psy11230 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPF-----PDDGKSCLHIAATK---NI-RLVRLLLEYNVDVNAVDNLG 78 (553)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----~~~~~~~l~~A~~~---~~-~~v~~Ll~~~~~~~~~~~~~ 78 (553)
.+....++|+.|+..|+.+.|+.+++.|++++... +..|.||||+|+.. |+ +++++|+++|++++..|..|
T Consensus 126 ~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred ccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence 34445679999999999999999999999965432 67899999999998 78 99999999999999999999
Q ss_pred CcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy11230 79 NTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT 139 (553)
Q Consensus 79 ~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~ 139 (553)
+||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 206 ~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHc--CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999998 9999999999999999999999999999999999999999999998864
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=7.8e-22 Score=191.68 Aligned_cols=128 Identities=23% Similarity=0.264 Sum_probs=117.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCccHHHHHHh---cCH-HHHHHHHHcCCCCcccCCCCCcHH
Q psy11230 12 GITLFQQAIVSSQTPIAKLLAERGANINDP-----FPDDGKSCLHIAAT---KNI-RLVRLLLEYNVDVNAVDNLGNTVL 82 (553)
Q Consensus 12 g~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~~~~~l~~A~~---~~~-~~v~~Ll~~~~~~~~~~~~~~t~l 82 (553)
..+.|+.|+..|+.++|+.|++.|++++.. .+..|.||||+|+. .|+ ++|++|+++|++++..|..|+|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 447899999999999999999999998755 26689999999966 888 999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy11230 83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTEC 141 (553)
Q Consensus 83 ~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 141 (553)
|+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 212 h~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 212 HYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHTTT--TCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 999998 999999999999999999999999999999999999999999999999875
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.4e-21 Score=142.93 Aligned_cols=93 Identities=37% Similarity=0.565 Sum_probs=89.1
Q ss_pred CCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy11230 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488 (553)
Q Consensus 409 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~ 488 (553)
+|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC
Q psy11230 489 VAILECLLVNKAD 501 (553)
Q Consensus 489 ~~~~~~Ll~~g~~ 501 (553)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999975
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=4.7e-22 Score=152.25 Aligned_cols=109 Identities=29% Similarity=0.361 Sum_probs=85.6
Q ss_pred ccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCcccccccccCCCCcHH
Q psy11230 438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPL 517 (553)
Q Consensus 438 ~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l 517 (553)
.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+. .|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK----DGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT----TCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC----CCCCHH
Confidence 3566778888888888888888888888888887788888888888888888888888888888777766 678888
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy11230 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGNTAL 550 (553)
Q Consensus 518 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 550 (553)
|+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 888888888888888888888888888887763
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=1.6e-21 Score=149.27 Aligned_cols=105 Identities=33% Similarity=0.471 Sum_probs=61.9
Q ss_pred CCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230 43 PDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121 (553)
Q Consensus 43 ~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~ 121 (553)
+.+|.||||+|+..|+ +++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++..|+||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT--TCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 4455555555555555 555555555555555555566666666655 5666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy11230 122 RTGNYKMVRVLIDHGAHTECKNHQGYNA 149 (553)
Q Consensus 122 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 149 (553)
..|+.+++++|+++|++++.++..+.+|
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 6666666666666666666665555554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=3e-18 Score=129.31 Aligned_cols=88 Identities=31% Similarity=0.338 Sum_probs=55.0
Q ss_pred CCCCccHHHHHHhcCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhhcCCChHHHHHHhhCCCCccCCCCCCCcHHHHHH
Q psy11230 43 PDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121 (553)
Q Consensus 43 ~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~A~ 121 (553)
+.+|.|+||+|+..|+ +++++|++.|++++..|..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 4555666666666666 666666666666666666666666666665 6666666666666666666666666666666
Q ss_pred HcCCHHHHHHH
Q psy11230 122 RTGNYKMVRVL 132 (553)
Q Consensus 122 ~~g~~~iv~~L 132 (553)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 66666666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=5.5e-18 Score=127.84 Aligned_cols=89 Identities=27% Similarity=0.396 Sum_probs=54.2
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy11230 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486 (553)
Q Consensus 407 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~t~l~~A~~~ 486 (553)
+..|.|+||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|||++|+..
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHH
Q psy11230 487 QNVAILECL 495 (553)
Q Consensus 487 ~~~~~~~~L 495 (553)
++.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 666666554
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=43.98 E-value=52 Score=31.42 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=88.2
Q ss_pred HHHHHHHcCCchHH-----HHHHcCCCCCCCCCCCChHHHHHHhcC--------------CHHHHHHHHhCCCCcccccc
Q psy11230 381 PLHIAVQNGYVAIP-----NLIRHGANVNARNKYAKTPLHIAVEQK--------------NMSALNYLLEHGAQVDARTQ 441 (553)
Q Consensus 381 ~l~~a~~~~~~~~~-----~ll~~~~~~~~~~~~~~~~l~~a~~~~--------------~~~~~~~Ll~~g~~~~~~~~ 441 (553)
.+...++.|..+-. .+...|..++... .+.|..++... ..++++.+.+.|..++....
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t---yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYH---YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34555667776432 3446677665432 34555555432 14567777788887765432
Q ss_pred CCCCHHHHHHHhCCHHHHH----HHHhcCCCCCCCCCCCCcHHHHHHHhCCH----HHHHHHHhccCCcccccccccCCC
Q psy11230 442 LGKDPLYIAVEMHNLSIVE----QLLKFKANVNSSDQFGRTVLHLAVKIQNV----AILECLLVNKADINAKIISGIWKG 513 (553)
Q Consensus 442 ~~~t~l~~A~~~~~~~~v~----~L~~~g~~~~~~~~~~~t~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~ 513 (553)
.+.+...++.|..+-+. .+.+.|..++... -.+.+...++.|.. ++++.+.+.|..|+..+..
T Consensus 109 --n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~----- 179 (501)
T 4g26_A 109 --TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA----- 179 (501)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH-----
T ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH-----
Confidence 34566677888876444 4445677665432 12344455667775 4666777889998887552
Q ss_pred CcHHHHHHhhCCHHHHHHHH----hcCCCCC
Q psy11230 514 YTPLHLAVESNNEAVINKLL----DYNPDLD 540 (553)
Q Consensus 514 ~t~l~~A~~~~~~~~v~~Ll----~~g~~~~ 540 (553)
+.+...++.|+.+-+.-++ +.|..|+
T Consensus 180 -~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 180 -ALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred -HHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 5677788889887554443 4455544
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=38.94 E-value=63 Score=30.85 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=61.9
Q ss_pred HHHHcCCCCCCCCCCCChHHHHHHhcCCHHH----HHHHHhCCCCccccccCCCCHHHHHHHhCCHH----HHHHHHhcC
Q psy11230 395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSA----LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS----IVEQLLKFK 466 (553)
Q Consensus 395 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~----~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~----~v~~L~~~g 466 (553)
.+...|..++.... .+.+...++.|..+- ++.+.+.|..++.... .+.+...++.|..+ +++.+.+.|
T Consensus 95 ~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 95 QMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 45677776654321 244566677888754 4444567777765432 23455566788866 445555678
Q ss_pred CCCCCCCCCCCcHHHHHHHhCCHH----HHHHHHhccCCccccc
Q psy11230 467 ANVNSSDQFGRTVLHLAVKIQNVA----ILECLLVNKADINAKI 506 (553)
Q Consensus 467 ~~~~~~~~~~~t~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~ 506 (553)
..++... -.+.+...+..|+.+ +++.+.+.|..|+..+
T Consensus 171 ~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 171 VVPEEPE--LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CCCCHHH--HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 7765432 123455556777765 4455556677776653
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=37.30 E-value=1.5e+02 Score=23.39 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=86.5
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy11230 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194 (553)
Q Consensus 115 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~~~~~l~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Ll~~~ 194 (553)
+=+..|...|++++..-+.+..- ++-. ....-..|...|+.++++.....-
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~----------~~~~-------------------Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLN----------DSIT-------------------WERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC----------CHHH-------------------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhC----------CHHH-------------------HHHHHHHHHHcCChHHHHHHHHHh
Confidence 44778999999988877765310 0000 012334678899999999888774
Q ss_pred CCccchhccccccCCchhhHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCcHHHHHHHcCCHH-HHHHHHhCCCCCCcccc
Q psy11230 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLK-IVEFLLDHGACVDSLQF 273 (553)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~A~~~~~~e-~v~~Ll~~~~~~~~~~~ 273 (553)
-++ ...+......|+.+-++.+.+.- ....+...+++.+...|+++ +++.|.+.+.
T Consensus 61 ~D~------------~~L~~Ly~~tg~~e~L~kla~iA----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r------- 117 (177)
T 3mkq_B 61 HSF------------DKLSFLYLVTGDVNKLSKMQNIA----QTREDFGSMLLNTFYNNSTKERSSIFAEGGS------- 117 (177)
T ss_dssp TCH------------HHHHHHHHHHTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-------
T ss_pred CCH------------HHHHHHHHHhCCHHHHHHHHHHH----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCC-------
Confidence 443 35566666788888888776531 01112235778888888765 7777776543
Q ss_pred cCCHHHHHHHhCCHHHHHHHHHhc
Q psy11230 274 IHSPLHLAIEKQHIAIVQLLLRRN 297 (553)
Q Consensus 274 ~~~~l~~a~~~~~~~~~~~l~~~~ 297 (553)
...+..+|-.++..++...+.+..
T Consensus 118 ~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 118 LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 235677888999999999888764
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=35.68 E-value=32 Score=18.70 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHhhCCHHHHHHHH
Q psy11230 517 LHLAVESNNEAVINKLL 533 (553)
Q Consensus 517 l~~A~~~~~~~~v~~Ll 533 (553)
+..|+..|+++.+++|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 56788889998888774
No 119
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.23 E-value=17 Score=24.50 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCccc
Q psy11230 25 TPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNAV 74 (553)
Q Consensus 25 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~~ 74 (553)
.+.|+.|++-|++-... ..+| .+...+. ..++||+++..+++..
T Consensus 22 ~~~I~qL~~MGF~~~~a-----~~AL-~~~n~n~e~A~ewL~~h~~D~D~~ 66 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPA-----EEAL-KSNNMNLDQAMSALLEKKVDVDKR 66 (85)
T ss_dssp HHHHHHHHHHTCCHHHH-----HHHH-HHTTSCHHHHHHHHHTTSCCSSCC
T ss_pred HHHHHHHHHcCCCHHHH-----HHHH-HHcCCCHHHHHHHHHHCcCCcccc
Confidence 56788888888754222 3344 3334445 7888888887766543
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=33.27 E-value=1.6e+02 Score=23.19 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=83.7
Q ss_pred CcHHHHHHHcCCchHH-HHHHcCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHhCCCCccccccCCCCHHHHHHHhCCHH
Q psy11230 379 QMPLHIAVQNGYVAIP-NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457 (553)
Q Consensus 379 ~~~l~~a~~~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 457 (553)
.+-+..|.+.|++++. .+.+..-+. ...+..=..|...|++++++.-..+-.++.. .+......|+.+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~~----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~-------L~~Ly~~tg~~e 77 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLNDS----ITWERLIQEALAQGNASLAEMIYQTQHSFDK-------LSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH-------HHHHHHHHTCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCH----HHHHHHHHHHHHcCChHHHHHHHHHhCCHHH-------HHHHHHHhCCHH
Confidence 3457788888888877 333321110 1112444567888999999988876555432 444555567777
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH-HHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHh-c
Q psy11230 458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNV-AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD-Y 535 (553)
Q Consensus 458 ~v~~L~~~g~~~~~~~~~~~t~l~~A~~~~~~-~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~ 535 (553)
-++.+.+.. ....+-+.+++.+...|++ +++++|.+.|.- .-+..+|.-+|..++.+-+++ .
T Consensus 78 ~L~kla~iA----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~------------~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIA----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSL------------PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH------------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh------------HHHHHHHHHcCcHHHHHHHHHHh
Confidence 666654321 1122234677888888886 588888877632 246788999999999988875 4
Q ss_pred CC
Q psy11230 536 NP 537 (553)
Q Consensus 536 g~ 537 (553)
|.
T Consensus 142 ~~ 143 (177)
T 3mkq_B 142 EV 143 (177)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 121
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.13 E-value=38 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=27.8
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCccHHHHHHhcCH-HHHHHHHHcCCCCcc
Q psy11230 24 QTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI-RLVRLLLEYNVDVNA 73 (553)
Q Consensus 24 ~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~A~~~~~-~~v~~Ll~~~~~~~~ 73 (553)
+.+.|+.|++.|++-... ..+|..+...+- ..++||+++.-+.+.
T Consensus 29 ~e~~v~~L~~MGF~~~~a-----~~AL~~t~n~n~e~A~ewL~~h~~d~d~ 74 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHC-----QKAAINTSNAGVEEAMNWLLSHMDDPDI 74 (84)
T ss_dssp CHHHHHHHHHHTCCHHHH-----HHHHHHTTTCCHHHHHHHHHHHTTCSTT
T ss_pred CHHHHHHHHHcCCCHHHH-----HHHHHHHcCCCHHHHHHHHHhCCCcccc
Confidence 567888999888763222 233333333345 788999887655443
No 122
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.09 E-value=55 Score=20.55 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCCC
Q psy11230 490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541 (553)
Q Consensus 490 ~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~ 541 (553)
+.++-|++.|...+.... +|...-..+-...++||+++..+++.
T Consensus 11 ~~v~~L~~MGF~~~~a~~--------AL~~t~n~~~e~A~~wL~~h~~d~d~ 54 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALK--------ALAATGRKTAEEALAWLHDHCNDPSL 54 (64)
T ss_dssp SSHHHHHHTSCCHHHHHH--------HHHHHTSCCHHHHHHHHHHHSSSTTS
T ss_pred HHHHHHHHcCCCHHHHHH--------HHHHhCCCCHHHHHHHHHhCCCCccc
Confidence 345666666655433221 33322111233366777777665443
No 123
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.16 E-value=79 Score=20.53 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=22.6
Q ss_pred CHHHHHHHHhccCCcccccccccCCCCcHHHHHHhhCCHHHHHHHHhcCCCCC
Q psy11230 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540 (553)
Q Consensus 488 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 540 (553)
+.+.++-|++.|.+..... .+|...-..+-...++||+++..+++
T Consensus 9 ~e~~v~~L~~MGF~~~~a~--------~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACR--------KAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHH--------HHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHH--------HHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 3456677777776543321 23332211122336677777765543
Done!